AlfalfaGEDB | Msa0209760

M. sativa cultivar zhongmu-4 / Msa0209760

KEGG: K01092
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0023052 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0071545 GO:0071704 GO:1901575 GO:1901615 GO:1901616
PFAM: PF00459.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0209760	XP_013442522.1	97.721	351	7	1	1	351	1	350	0.0	707

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0209760	sp\|Q94F00\|IMPL1_ARATH	81.699	306	56	0	46	351	66	371	0.0	541

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0209760	A0A072TGR0	97.721	351	7	1	1	351	1	350	0.0	707

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030000	Msa0209760	0.818185	2.236115e-52	-8.615850e-47
Msa0073350	Msa0209760	0.806660	7.385611e-50	-8.615850e-47
Msa0125230	Msa0209760	0.819418	1.173412e-52	-8.615850e-47
Msa0185550	Msa0209760	0.833380	5.513130e-56	-8.615850e-47
Msa0190000	Msa0209760	0.805653	1.203088e-49	-8.615850e-47
Msa0206970	Msa0209760	0.801309	9.567485e-49	-8.615850e-47
Msa0209760	Msa0209780	0.972061	3.719854e-134	-8.615850e-47
Msa0209760	Msa0215980	0.807653	4.550506e-50	-8.615850e-47
Msa0209760	Msa0227960	0.833197	6.125509e-56	-8.615850e-47
Msa0209760	Msa0236350	0.809671	1.686340e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0209760	MtrunA17_Chr2g0306101	97.721	351	7	1	1	351	1	350	0.0	707
Msa0209760	MtrunA17_Chr2g0290121	33.962	265	161	7	67	324	11	268	5.36e-38	137
Msa0209760	MtrunA17_Chr3g0145001	25.969	258	165	7	54	302	53	293	7.88e-16	77.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0209760	AT1G31190.1	81.699	306	56	0	46	351	66	371	0.0	541
Msa0209760	AT3G02870.1	35.685	241	142	6	79	313	22	255	1.73e-38	138
Msa0209760	AT3G02870.3	35.685	241	142	6	79	313	19	252	1.86e-38	138
Msa0209760	AT3G02870.2	34.855	241	142	7	79	313	22	253	2.39e-35	130
Msa0209760	AT4G39120.1	28.390	236	154	5	70	302	89	312	4.60e-20	90.1
Msa0209760	AT4G39120.2	28.390	236	154	5	70	302	118	341	5.49e-20	90.5

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Find 97 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAGCTATGAGATGGA+TGG	0.635454	2_1:+49156727	None:intergenic
AAACGGCGTGATCCATGCTA+AGG	0.590514	2_1:-49152004	Msa0209760:intron
AAAGTCAAACCTCTCGAAGT+TGG	0.465088	2_1:-49156623	Msa0209760:CDS
AAATCCTACTGCTGCTACAG+TGG	0.541368	2_1:-49154751	Msa0209760:intron
AAATGAGCTATGAGATGGAT+GGG	0.619523	2_1:+49156728	None:intergenic
AACACAATCTCTATTCCTTT+TGG	0.288544	2_1:-49156756	Msa0209760:five_prime_UTR
AAGAATTTACGGATGTCAGC+AGG	0.448133	2_1:-49152844	Msa0209760:CDS
AAGCCATGGGATATGGCTGC+TGG	0.542409	2_1:-49152659	Msa0209760:CDS
AAGCTGGTGGCACAGTCTCT+CGG	0.522324	2_1:-49152074	Msa0209760:CDS
AAGGAGGATCGCAGGTTGAA+CGG	0.541106	2_1:+49156512	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAGAACAACTCTATTCAA+GGG	-	chr2_1:49150825-49150844	Msa0209760:exon	30.0%
AATACTCATATGAGCAGTTT+CGG	-	chr2_1:49151149-49151168	Msa0209760:intron	30.0%
GGTCAAATACAATGATATCT+TGG	-	chr2_1:49151337-49151356	Msa0209760:intron	30.0%
ATGACATAAATTGCTCAAGT+TGG	-	chr2_1:49151376-49151395	Msa0209760:intron	30.0%
ACCGCTAATGTAAAAAACAT+AGG	+	chr2_1:49151477-49151496	None:intergenic	30.0%
ATATAACCAACGAAGGTAAT+TGG	+	chr2_1:49151688-49151707	None:intergenic	30.0%
GTATAAAGGATTAACTGACT+TGG	-	chr2_1:49151750-49151769	Msa0209760:intron	30.0%
TGAAGATCATCTTATTCTTG+GGG	-	chr2_1:49151950-49151969	Msa0209760:intron	30.0%
TCTTAAAATGTTGGGGAAAA+AGG	+	chr2_1:49152059-49152078	None:intergenic	30.0%
AGAAACTCCAAATTCAAACA+GGG	+	chr2_1:49152147-49152166	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	49150609	49156794	49150609	ID=Msa0209760;Name=Msa0209760
chr2_1	mRNA	49150609	49156794	49150609	ID=Msa0209760-mRNA-1;Parent=Msa0209760;Name=Msa0209760-mRNA-1;_AED=0.08;_eAED=0.08;_QI=79\|1\|1\|1\|1\|1\|10\|223\|351
chr2_1	exon	49150609	49150930	49150609	ID=Msa0209760-mRNA-1:exon:13625;Parent=Msa0209760-mRNA-1
chr2_1	exon	49152005	49152106	49152005	ID=Msa0209760-mRNA-1:exon:13624;Parent=Msa0209760-mRNA-1
chr2_1	exon	49152652	49152765	49152652	ID=Msa0209760-mRNA-1:exon:13623;Parent=Msa0209760-mRNA-1
chr2_1	exon	49152844	49152942	49152844	ID=Msa0209760-mRNA-1:exon:13622;Parent=Msa0209760-mRNA-1
chr2_1	exon	49153064	49153116	49153064	ID=Msa0209760-mRNA-1:exon:13621;Parent=Msa0209760-mRNA-1
chr2_1	exon	49153259	49153316	49153259	ID=Msa0209760-mRNA-1:exon:13620;Parent=Msa0209760-mRNA-1
chr2_1	exon	49154752	49154840	49154752	ID=Msa0209760-mRNA-1:exon:13619;Parent=Msa0209760-mRNA-1
chr2_1	exon	49155371	49155504	49155371	ID=Msa0209760-mRNA-1:exon:13618;Parent=Msa0209760-mRNA-1
chr2_1	exon	49155624	49155691	49155624	ID=Msa0209760-mRNA-1:exon:13617;Parent=Msa0209760-mRNA-1
chr2_1	exon	49156476	49156794	49156476	ID=Msa0209760-mRNA-1:exon:13616;Parent=Msa0209760-mRNA-1
chr2_1	five_prime_UTR	49156716	49156794	49156716	ID=Msa0209760-mRNA-1:five_prime_utr;Parent=Msa0209760-mRNA-1
chr2_1	CDS	49156476	49156715	49156476	ID=Msa0209760-mRNA-1:cds;Parent=Msa0209760-mRNA-1
chr2_1	CDS	49155624	49155691	49155624	ID=Msa0209760-mRNA-1:cds;Parent=Msa0209760-mRNA-1
chr2_1	CDS	49155371	49155504	49155371	ID=Msa0209760-mRNA-1:cds;Parent=Msa0209760-mRNA-1
chr2_1	CDS	49154752	49154840	49154752	ID=Msa0209760-mRNA-1:cds;Parent=Msa0209760-mRNA-1
chr2_1	CDS	49153259	49153316	49153259	ID=Msa0209760-mRNA-1:cds;Parent=Msa0209760-mRNA-1
chr2_1	CDS	49153064	49153116	49153064	ID=Msa0209760-mRNA-1:cds;Parent=Msa0209760-mRNA-1
chr2_1	CDS	49152844	49152942	49152844	ID=Msa0209760-mRNA-1:cds;Parent=Msa0209760-mRNA-1
chr2_1	CDS	49152652	49152765	49152652	ID=Msa0209760-mRNA-1:cds;Parent=Msa0209760-mRNA-1
chr2_1	CDS	49152005	49152106	49152005	ID=Msa0209760-mRNA-1:cds;Parent=Msa0209760-mRNA-1
chr2_1	CDS	49150832	49150930	49150832	ID=Msa0209760-mRNA-1:cds;Parent=Msa0209760-mRNA-1
chr2_1	three_prime_UTR	49150609	49150831	49150609	ID=Msa0209760-mRNA-1:three_prime_utr;Parent=Msa0209760-mRNA-1

Gene Sequence

>Msa0209760

ATGATGTCAATTGTATTCTCCACCTCCGCAGCAGCTACAAAACTATTTCCTCCTACCACTTACCGCCTTCAAAGTCAAACCTCTCGAAGTTGGAGGCTGAAATCATCATCATCATCATGTAAGAACTCTTTGAAATCTGAAGAACAACTCTATTCAAGGGTTGGTGCACGCTCCACTGGACCCGTTCAACCTGCGATCCTCCTTCAAGTTGCCACAACTGCTGCTCAGACTGGTGCCAAGGTTGTGATGGATGCTGTTAATAAGCCAAGGGATATTACGTATAAAGGATTAACTGACTTGGTGACTGAGACGGATAAAATGAGCGAAGCTGCAATATTAGAAGTGGTGAAGAAGAATTTTGAAGATCATCTTATTCTTGGGGAAGAAGGAGGCATTATAGGAGATGTAGCTTCCGATTATCTCTGGTGCATTGATCCCTTAGATGGGACAACAAACTTTGCACATGGCTATCCCAGCTTTGCTGTTTCTGTTGGAGTTCTATATCGAGGAAATCCTACTGCTGCTACAGTGGTTGAGTTTGTTGGTGGTCCTATGTGTTGGAATACTCGCATTTTCACTGCAACTGCTGGTGGTGGAGCATTCTGCAACGGCCAAAGGATCGAAGTGAGTGCAACTAATCAGGTGGAACGATCTCTTCTAGTGACAGGTTTTGGGTATGAACACGATGAAGCCTGGGCTACTAACATAGAATTATTCAAAGAATTTACGGATGTCAGCAGGGGTGTAAGACGGCTTGGTGCAGCTGCTGTGGACATGTGTCATGTGGCTTTGGGAATTGTAGAAGCTTATTGGGAATATCGTCTAAAGCCATGGGATATGGCTGCTGGTGTTTTGATGGTAGAGGAAGCTGGTGGCACAGTCTCTCGGATGGATGGCGGAAAATTTTGTGTTTTTGATAGATCTGTTTTGGTATCAAACGGCGTGATCCATGCTAAGCTTCTGGAGAGAATTGGACCTGCAACAGAGGGCTTAAAAAGTAAGGGAATTGATTTTTCATTATGGTACAAACCTGAGGACTACAGAGCTGACGTTTAA

Protein sequence

>Msa0209760

MMSIVFSTSAAATKLFPPTTYRLQSQTSRSWRLKSSSSSCKNSLKSEEQLYSRVGARSTGPVQPAILLQVATTAAQTGAKVVMDAVNKPRDITYKGLTDLVTETDKMSEAAILEVVKKNFEDHLILGEEGGIIGDVASDYLWCIDPLDGTTNFAHGYPSFAVSVGVLYRGNPTAATVVEFVGGPMCWNTRIFTATAGGGAFCNGQRIEVSATNQVERSLLVTGFGYEHDEAWATNIELFKEFTDVSRGVRRLGAAAVDMCHVALGIVEAYWEYRLKPWDMAAGVLMVEEAGGTVSRMDGGKFCVFDRSVLVSNGVIHAKLLERIGPATEGLKSKGIDFSLWYKPEDYRADV*