AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0884730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0884730 MtrunA17_Chr6g0465111 98.061 361 7 0 1 361 1 361 0.0 735
Msa0884730 MtrunA17_Chr6g0465121 94.737 361 14 2 1 361 14 369 0.0 698
Msa0884730 MtrunA17_Chr1g0200981 69.859 355 107 0 7 361 6 360 0.0 533
Msa0884730 MtrunA17_Chr6g0464971 62.291 358 135 0 3 360 5 362 5.32e-173 485
Msa0884730 MtrunA17_Chr6g0464961 62.849 358 133 0 3 360 27 384 3.18e-164 466
Msa0884730 MtrunA17_Chr6g0477771 54.270 363 161 2 1 359 1 362 1.27e-144 414
Msa0884730 MtrunA17_Chr3g0110001 53.719 363 164 2 1 359 1 363 1.29e-138 398
Msa0884730 MtrunA17_Chr6g0464931 65.179 112 37 1 3 112 5 116 8.11e-39 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0884730 AT4G09670.1 62.953 359 133 0 1 359 1 359 1.09e-177 498
Msa0884730 AT1G34200.1 57.542 358 140 2 1 357 1 347 4.05e-149 425
Msa0884730 AT1G66130.1 43.750 368 194 7 1 359 1 364 2.75e-97 293

Find 113 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCGGCGCTTCGTTATTT+TGG 0.045057 6_1:+38817685 Msa0884730:CDS
ACAAATTGCGTCACAATTAT+TGG 0.148469 6_1:-38818310 None:intergenic
CCCTTCATCACCTCCGTTCT+AGG 0.227507 6_1:-38815151 None:intergenic
TTGGAAGATGGGGAGAAGTT+TGG 0.239434 6_1:+38815178 Msa0884730:CDS
TTCATAGGAGCCGTAGATTT+TGG 0.245108 6_1:-38814918 None:intergenic
CCAATCCGTTTCGGCATTCT+CGG 0.279201 6_1:+38814764 Msa0884730:CDS
GGAGTGTGGGGTGCAGTTTA+TGG 0.281913 6_1:+38815105 Msa0884730:CDS
TAGGAAAACACAACTGATAT+TGG 0.320047 6_1:+38818022 Msa0884730:CDS
TTGATGATCTTGTCACTAGA+TGG 0.323932 6_1:+38817865 Msa0884730:CDS
AGGTAAACAGCGTCAACATT+AGG 0.327501 6_1:-38814956 None:intergenic
TCTCCCTCAGGAGGCTCTTA+TGG 0.332594 6_1:+38817923 Msa0884730:CDS
CAGCAGTAATATCCATTGTT+AGG 0.333109 6_1:-38817752 None:intergenic
TGGAAGATGGGGAGAAGTTT+GGG 0.338781 6_1:+38815179 Msa0884730:CDS
ACGAAGGATGGTATTGTGTT+AGG 0.339462 6_1:+38817574 Msa0884730:CDS
GATGCTTTCTTCTCTTCATA+AGG 0.348030 6_1:-38817816 None:intergenic
GGCGGTGGCTGCAGCGAAGA+AGG 0.371481 6_1:+38815009 Msa0884730:CDS
TGCCACCAAACGAGAAAATT+CGG 0.372855 6_1:-38817949 None:intergenic
ACGCGAAACCGGAGAAGAAA+TGG 0.375990 6_1:+38817988 Msa0884730:CDS
TTTAGCGAAGGTGGTTGCTT+TGG 0.377463 6_1:-38814873 None:intergenic
ACCACCCTCTTTCAACTTGA+AGG 0.378539 6_1:-38818245 None:intergenic
CTAGATGCACTCGGCTCTCT+TGG 0.395882 6_1:+38817549 Msa0884730:CDS
TGCGTCACAATTATTGGAAC+TGG 0.396392 6_1:-38818304 None:intergenic
ATGTCGTTCTCGAGAAAATC+AGG 0.401057 6_1:-38817510 None:intergenic
TTATTGCGACGCACTAATAA+CGG 0.401566 6_1:-38818147 None:intergenic
ATTACTGCTGTTGGAACAAA+AGG 0.410482 6_1:+38817765 Msa0884730:CDS
ATCAGCACCAAATGTAAAAC+AGG 0.414584 6_1:-38817487 None:intergenic
ATGCTTTCTTCTCTTCATAA+GGG 0.417389 6_1:-38817815 None:intergenic
AACAAAGATCCGAGTTCAGC+AGG 0.417417 6_1:-38818124 None:intergenic
GGTGAAGGCTTCGATTGATA+AGG 0.421033 6_1:+38818049 Msa0884730:CDS
GTGAAGGCTTCGATTGATAA+GGG 0.423725 6_1:+38818050 Msa0884730:CDS
TGATGATCTTGTCACTAGAT+GGG 0.427776 6_1:+38817866 Msa0884730:CDS
GAAGTTTGGGAAGGTTAAAT+CGG 0.436713 6_1:+38815192 Msa0884730:CDS
TGTGGGGTGCAGTTTATGGA+TGG 0.445150 6_1:+38815109 Msa0884730:CDS
GGTAAACAGCGTCAACATTA+GGG 0.445816 6_1:-38814955 None:intergenic
CGAAGGATGGTATTGTGTTA+GGG 0.448127 6_1:+38817575 Msa0884730:CDS
TGAAGGTGTGTGAGGAGTGT+GGG 0.450982 6_1:+38815092 Msa0884730:CDS
ATTGTCGGCCATTTCTTCTC+CGG 0.453746 6_1:-38817996 None:intergenic
TCCTAGAACGGAGGTGATGA+AGG 0.459813 6_1:+38815150 Msa0884730:CDS
TGAGAGTTTGCGGGCTATGT+CGG 0.462358 6_1:-38814792 None:intergenic
GTTATTGAGTTTAGCGAAGG+TGG 0.464372 6_1:-38814882 None:intergenic
CCGAGAATGCCGAAACGGAT+TGG 0.465327 6_1:-38814764 None:intergenic
GAATGGCGCGTGAGAGTTTG+CGG 0.478095 6_1:-38814802 None:intergenic
GCGGTGGCTGCAGCGAAGAA+GGG 0.483256 6_1:+38815010 Msa0884730:CDS
GTGAAGGTGTGTGAGGAGTG+TGG 0.484508 6_1:+38815091 Msa0884730:CDS
GACGGCGGAGATTGTGGCGG+TGG 0.486483 6_1:-38814834 None:intergenic
TCCTTCACACTCACCGCCAC+AGG 0.493639 6_1:-38815055 None:intergenic
GAACGACATTCGTGTGAAGC+CGG 0.497034 6_1:+38817524 Msa0884730:CDS
AGAAATGGCCGACAATTAGT+AGG 0.498713 6_1:+38818003 Msa0884730:CDS
ACAATGGATATTACTGCTGT+TGG 0.503005 6_1:+38817756 Msa0884730:CDS
CGGTGGCTGCAGCGAAGAAG+GGG 0.507663 6_1:+38815011 Msa0884730:CDS
GATGATCTTGTCACTAGATG+GGG 0.507725 6_1:+38817867 Msa0884730:CDS
AATGCCGAAACGGATTGGTT+CGG 0.512845 6_1:-38814759 None:intergenic
CGCAACCGAGAATGCCGAAA+CGG 0.519691 6_1:-38814769 None:intergenic
ACAAGACCAAAGGATTCAAA+AGG 0.521263 6_1:+38818368 Msa0884730:three_prime_UTR
TTGTGTTAGGGCAATTCTGT+GGG 0.521428 6_1:+38817587 Msa0884730:CDS
CAAACCGAACCAATCCGTTT+CGG 0.521658 6_1:+38814755 Msa0884730:CDS
GCTCTCTTGGTGACGAAGGA+TGG 0.525086 6_1:+38817562 Msa0884730:CDS
GCTTCCGACGGCGGAGATTG+TGG 0.526770 6_1:-38814840 None:intergenic
TTTCATTCCTGAATCTGTAC+AGG 0.527130 6_1:-38818080 None:intergenic
ACTCCAGCTTTATTAAGCAC+TGG 0.528282 6_1:-38817654 None:intergenic
GGAGAGAGTGCGGCTTCCGA+CGG 0.533874 6_1:-38814852 None:intergenic
TGTCTTCACCCTGCTGAACT+CGG 0.543457 6_1:+38818115 Msa0884730:three_prime_UTR
ATTGTGTTAGGGCAATTCTG+TGG 0.545531 6_1:+38817586 Msa0884730:CDS
CTCGGCTCTCTTGGTGACGA+AGG 0.552931 6_1:+38817558 Msa0884730:CDS
GAGCCAGTGCTTAATAAAGC+TGG 0.554395 6_1:+38817651 Msa0884730:CDS
ACTGATATTGGACGCGGTGA+AGG 0.555417 6_1:+38818034 Msa0884730:CDS
ACATGCAACGTCGTCGGTAA+CGG 0.556431 6_1:-38814980 None:intergenic
AATGGCGCGTGAGAGTTTGC+GGG 0.557508 6_1:-38814801 None:intergenic
TTTCTTATCTAACCTAACAA+TGG 0.559985 6_1:+38817740 Msa0884730:CDS
GAAGTTATTGAGTTTAGCGA+AGG 0.560880 6_1:-38814885 None:intergenic
TATGACCTTCAAGTTGAAAG+AGG 0.562855 6_1:+38818240 Msa0884730:three_prime_UTR
CGACGACGTTGCATGTGAAG+TGG 0.565201 6_1:+38814987 Msa0884730:CDS
GTGGGGTGCAGTTTATGGAT+GGG 0.567208 6_1:+38815110 Msa0884730:CDS
CCTAGAACGGAGGTGATGAA+GGG 0.571024 6_1:+38815151 Msa0884730:CDS
GTTGCATGTGAAGTGGGCGG+TGG 0.573707 6_1:+38814994 Msa0884730:CDS
AATAGAAAATGATCTCCCTC+AGG 0.576919 6_1:+38817911 Msa0884730:CDS
CCTCCCACCGCCAAAATCTA+CGG 0.577677 6_1:+38814908 Msa0884730:CDS
AGATTGTGGCGGTGGAAGAG+AGG 0.581797 6_1:-38814826 None:intergenic
GCAACGTCGTCGGTAACGGC+AGG 0.586228 6_1:-38814976 None:intergenic
GTCGTCAAGAACTTCTTCAT+AGG 0.601925 6_1:-38814933 None:intergenic
ACCGCCACAATCTCCGCCGT+CGG 0.602355 6_1:+38814836 Msa0884730:CDS
GGCGGTGGAAGAGAGGAGAA+TGG 0.605266 6_1:-38814819 None:intergenic
GAAATCAATAACAAGACCAA+AGG 0.609033 6_1:+38818358 Msa0884730:three_prime_UTR
TGGTTGCTTTGGAGAGAGTG+CGG 0.611254 6_1:-38814862 None:intergenic
GAAGGTGTGTGAGGAGTGTG+GGG 0.614462 6_1:+38815093 Msa0884730:CDS
AGATGGGGAGAAGTTTGGGA+AGG 0.616271 6_1:+38815183 Msa0884730:CDS
GAGAGTGCGGCTTCCGACGG+CGG 0.617179 6_1:-38814849 None:intergenic
ATTAAGCACTGGCTCGCGCG+AGG 0.618323 6_1:-38817643 None:intergenic
GCTGGAGTATTATTATCTTG+CGG 0.622471 6_1:+38817669 Msa0884730:CDS
GACGACGTTGCATGTGAAGT+GGG 0.624741 6_1:+38814988 Msa0884730:CDS
CAGTATTGCTGTCATGTATG+TGG 0.627499 6_1:+38818200 Msa0884730:three_prime_UTR
CACTTCACATGCAACGTCGT+CGG 0.627560 6_1:-38814986 None:intergenic
GGAGTTTGATGAGATTGTGA+AGG 0.628031 6_1:+38815075 Msa0884730:CDS
ACCTTCAAGTTGAAAGAGGG+TGG 0.628099 6_1:+38818244 Msa0884730:three_prime_UTR
GTGGATGCATCATCCTAGAA+CGG 0.629139 6_1:+38815138 Msa0884730:CDS
AGAAAATGATCTCCCTCAGG+AGG 0.633869 6_1:+38817914 Msa0884730:CDS
AACACAACTGATATTGGACG+CGG 0.636522 6_1:+38818028 Msa0884730:CDS
ACAAAGATCCGAGTTCAGCA+GGG 0.639775 6_1:-38818123 None:intergenic
ATGACCTTCAAGTTGAAAGA+GGG 0.645795 6_1:+38818241 Msa0884730:three_prime_UTR
GCCTGTGGCGGTGAGTGTGA+AGG 0.647317 6_1:+38815054 Msa0884730:CDS
TTACCATAAGAGCCTCCTGA+GGG 0.654472 6_1:-38817926 None:intergenic
AGTTTATGGATGGGACTATG+TGG 0.660551 6_1:+38815119 Msa0884730:CDS
TGAGATTGTGAAGGTGTGTG+AGG 0.665830 6_1:+38815084 Msa0884730:CDS
GATGCATCATCCTAGAACGG+AGG 0.667515 6_1:+38815141 Msa0884730:CDS
CTAGAACGGAGGTGATGAAG+GGG 0.676280 6_1:+38815152 Msa0884730:CDS
TCCGACGGCGGAGATTGTGG+CGG 0.676703 6_1:-38814837 None:intergenic
AAGCCGGATCTAGATGCACT+CGG 0.677755 6_1:+38817540 Msa0884730:CDS
TTTGCTTGAGAAGCCTGTGG+CGG 0.683993 6_1:+38815042 Msa0884730:CDS
TATTGCTGTCATGTATGTGG+TGG 0.688986 6_1:+38818203 Msa0884730:three_prime_UTR
GAGTGGTTATGATAGTACAG+TGG 0.696515 6_1:-38814660 None:intergenic
GTTACCATAAGAGCCTCCTG+AGG 0.717914 6_1:-38817927 None:intergenic
GACGTTGCATGTGAAGTGGG+CGG 0.734438 6_1:+38814991 Msa0884730:CDS
TGTGACGCAATTTGTCACTG+TGG 0.752298 6_1:+38818318 Msa0884730:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGGATTATTAATTTTTAG+AGG + chr6_1:38815961-38815980 Msa0884730:intron 15.0%
!! ATGAAAGATTAGTATAAATT+AGG + chr6_1:38816078-38816097 Msa0884730:intron 15.0%
!! ACTTTATCTATCAAAATTAT+AGG + chr6_1:38816531-38816550 Msa0884730:intron 15.0%
!! CAATAAGAAAAAAATATTTC+TGG + chr6_1:38818164-38818183 Msa0884730:three_prime_UTR 15.0%
!!! TATGATTTTTTTTGACACAA+GGG - chr6_1:38814685-38814704 None:intergenic 20.0%
!!! TTATGATTTTTTTTGACACA+AGG - chr6_1:38814686-38814705 None:intergenic 20.0%
!!! TTAAGAAAATATAAGCGTTT+TGG + chr6_1:38815373-38815392 Msa0884730:intron 20.0%
!!! TAAGAAAATATAAGCGTTTT+GGG + chr6_1:38815374-38815393 Msa0884730:intron 20.0%
!!! TGATTTAGTGATTTTTTGTT+AGG + chr6_1:38815600-38815619 Msa0884730:intron 20.0%
!!! GATTTAGTGATTTTTTGTTA+GGG + chr6_1:38815601-38815620 Msa0884730:intron 20.0%
!!! TGATTTATGAAACATGATTT+TGG + chr6_1:38815935-38815954 Msa0884730:intron 20.0%
!!! TTTGTTACGGATTATAAAAA+AGG + chr6_1:38815994-38816013 Msa0884730:intron 20.0%
!!! TTGTTACGGATTATAAAAAA+GGG + chr6_1:38815995-38816014 Msa0884730:intron 20.0%
!! ACATTAATATATCAGACTAT+CGG - chr6_1:38816165-38816184 None:intergenic 20.0%
!!! TAATTTGACTTTCATATTCT+TGG - chr6_1:38816576-38816595 None:intergenic 20.0%
!! TATGAAAGTCAAATTACTTT+AGG + chr6_1:38816580-38816599 Msa0884730:intron 20.0%
!!! TTCATCTGAATTGATTTAAT+TGG - chr6_1:38816644-38816663 None:intergenic 20.0%
!! TAAATCAATTCAGATGAATT+TGG + chr6_1:38816646-38816665 Msa0884730:intron 20.0%
!!! TCAACTTCATTTTGTAAATT+TGG + chr6_1:38816786-38816805 Msa0884730:intron 20.0%
!!! TTTTTTCATCTTAAACCAAA+AGG - chr6_1:38816996-38817015 None:intergenic 20.0%
!!! AAAACTTAATGTTTAGGATT+GGG - chr6_1:38817346-38817365 None:intergenic 20.0%
!! AACATAATTCAGAATCATAA+CGG - chr6_1:38817376-38817395 None:intergenic 20.0%
!! TTGTGATGATAAATGTTTTG+CGG - chr6_1:38814722-38814741 None:intergenic 25.0%
!!! TGTTTGTGTTTTGATAATGT+TGG + chr6_1:38815744-38815763 Msa0884730:intron 25.0%
! TTAAGAAAATAGAAGCGATT+CGG + chr6_1:38815835-38815854 Msa0884730:intron 25.0%
! AGTATAAATTAGGAGAATGT+AGG + chr6_1:38816088-38816107 Msa0884730:intron 25.0%
! GTATAAATTAGGAGAATGTA+GGG + chr6_1:38816089-38816108 Msa0884730:intron 25.0%
! AAACATGAGATACTGAAATT+AGG + chr6_1:38816116-38816135 Msa0884730:intron 25.0%
!!! TTTGTTTTGTTAGAGTCTAA+CGG + chr6_1:38816255-38816274 Msa0884730:intron 25.0%
! TCAAAATTATAGGAGTTAGA+TGG + chr6_1:38816541-38816560 Msa0884730:intron 25.0%
! GATAACCGAAAATCAATTTA+GGG - chr6_1:38816768-38816787 None:intergenic 25.0%
! TGATAACCGAAAATCAATTT+AGG - chr6_1:38816769-38816788 None:intergenic 25.0%
!! ACTTCATTTTGTAAATTTGG+AGG + chr6_1:38816789-38816808 Msa0884730:intron 25.0%
! CAAAGAATATGAAAAAGAGT+AGG - chr6_1:38816858-38816877 None:intergenic 25.0%
! CAATAGTTACAAGTTTAAGT+TGG + chr6_1:38816886-38816905 Msa0884730:intron 25.0%
! GAAGAGATAAAAAAAAATCC+TGG + chr6_1:38816951-38816970 Msa0884730:intron 25.0%
!!! TTTCTGTTGGTTCTTAATTT+TGG - chr6_1:38817258-38817277 None:intergenic 25.0%
!! GAAAACTTAATGTTTAGGAT+TGG - chr6_1:38817347-38817366 None:intergenic 25.0%
! TGGTTGAAAACTTAATGTTT+AGG - chr6_1:38817352-38817371 None:intergenic 25.0%
! TTTCTTATCTAACCTAACAA+TGG + chr6_1:38817740-38817759 Msa0884730:CDS 25.0%
! ATAAATGTTTTGCGGTTTGA+GGG - chr6_1:38814714-38814733 None:intergenic 30.0%
!!! AAGCGTTTTGGGAATTAAAT+CGG + chr6_1:38815385-38815404 Msa0884730:intron 30.0%
TAAGAAAATAGAAGCGATTC+GGG + chr6_1:38815836-38815855 Msa0884730:intron 30.0%
TATGAAACTAGAAGTGATGT+AGG + chr6_1:38815899-38815918 Msa0884730:intron 30.0%
ATGAAACTAGAAGTGATGTA+GGG + chr6_1:38815900-38815919 Msa0884730:intron 30.0%
!!! GAAACATGATTTTGGTGTTA+TGG + chr6_1:38815943-38815962 Msa0884730:intron 30.0%
CAAAGTTCACACATTAATTG+CGG + chr6_1:38816278-38816297 Msa0884730:intron 30.0%
ATTATCTACACTCATCCAAT+TGG + chr6_1:38816430-38816449 Msa0884730:intron 30.0%
!! ATCCAATTGGCTATTGATTT+GGG + chr6_1:38816443-38816462 Msa0884730:intron 30.0%
! GAATTGATTTAATTGGCTGA+AGG - chr6_1:38816637-38816656 None:intergenic 30.0%
!! TCTGACCCTAAATTGATTTT+CGG + chr6_1:38816760-38816779 Msa0884730:intron 30.0%
!! GGTTATCTAAATTCTAAAGC+AGG - chr6_1:38816825-38816844 None:intergenic 30.0%
AAAAGAGTAGGTGAACATTA+TGG - chr6_1:38816846-38816865 None:intergenic 30.0%
AACATTACTTGACATTAACC+AGG - chr6_1:38816972-38816991 None:intergenic 30.0%
! TGTCAAGTAATGTTTCCTTT+TGG + chr6_1:38816978-38816997 Msa0884730:intron 30.0%
GTTCAATAATGAGTCTCTAA+GGG - chr6_1:38817175-38817194 None:intergenic 30.0%
TGTTCAATAATGAGTCTCTA+AGG - chr6_1:38817176-38817195 None:intergenic 30.0%
AGGATTGGGATTGAAATATA+CGG - chr6_1:38817332-38817351 None:intergenic 30.0%
TAATTCAGAATCATAACGGT+TGG - chr6_1:38817372-38817391 None:intergenic 30.0%
CACTGATATATGGTTTGATT+TGG + chr6_1:38817447-38817466 Msa0884730:intron 30.0%
! ATTCACACCTGTTTTACATT+TGG + chr6_1:38817480-38817499 Msa0884730:CDS 30.0%
ATGCTTTCTTCTCTTCATAA+GGG - chr6_1:38817818-38817837 None:intergenic 30.0%
! TTTTCTATTACGTGCTTACT+CGG - chr6_1:38817900-38817919 None:intergenic 30.0%
! TGTGTTTTCCTACTAATTGT+CGG - chr6_1:38818014-38818033 None:intergenic 30.0%
TAGGAAAACACAACTGATAT+TGG + chr6_1:38818022-38818041 Msa0884730:CDS 30.0%
ACAAATTGCGTCACAATTAT+TGG - chr6_1:38818313-38818332 None:intergenic 30.0%
GAAATCAATAACAAGACCAA+AGG + chr6_1:38818358-38818377 Msa0884730:three_prime_UTR 30.0%
!!! TTTTTTTTGACACAAGGGAG+TGG - chr6_1:38814680-38814699 None:intergenic 35.0%
! GATAAATGTTTTGCGGTTTG+AGG - chr6_1:38814715-38814734 None:intergenic 35.0%
GAAGTTATTGAGTTTAGCGA+AGG - chr6_1:38814888-38814907 None:intergenic 35.0%
GAAGTTTGGGAAGGTTAAAT+CGG + chr6_1:38815192-38815211 Msa0884730:CDS 35.0%
TCGATTGCTAGGAATTATGA+AGG + chr6_1:38815675-38815694 Msa0884730:intron 35.0%
AAGAAAATAGAAGCGATTCG+GGG + chr6_1:38815837-38815856 Msa0884730:intron 35.0%
!! AGGTTAGAGCACTTTTGTTA+CGG + chr6_1:38815981-38816000 Msa0884730:intron 35.0%
ACATTAATTGCGGAGAAAAG+AGG + chr6_1:38816288-38816307 Msa0884730:intron 35.0%
ACGAGGACATTTGATATGTT+GGG - chr6_1:38816336-38816355 None:intergenic 35.0%
TACGAGGACATTTGATATGT+TGG - chr6_1:38816337-38816356 None:intergenic 35.0%
GTTTCTATACCACATGAAAC+TGG + chr6_1:38816400-38816419 Msa0884730:intron 35.0%
! CATCCAATTGGCTATTGATT+TGG + chr6_1:38816442-38816461 Msa0884730:intron 35.0%
!! TCCAATTGGCTATTGATTTG+GGG + chr6_1:38816444-38816463 Msa0884730:intron 35.0%
TTCACTCATTTGATAAGCTC+AGG - chr6_1:38816506-38816525 None:intergenic 35.0%
TGATTTAATTGGCTGAAGGA+AGG - chr6_1:38816633-38816652 None:intergenic 35.0%
TCAATGCTATAGCTTTCTGT+TGG - chr6_1:38817271-38817290 None:intergenic 35.0%
ATATCAGTGCAGAACATGTA+TGG - chr6_1:38817436-38817455 None:intergenic 35.0%
! ACATGTTCTGCACTGATATA+TGG + chr6_1:38817437-38817456 Msa0884730:intron 35.0%
ATCAGCACCAAATGTAAAAC+AGG - chr6_1:38817490-38817509 None:intergenic 35.0%
! GCTGGAGTATTATTATCTTG+CGG + chr6_1:38817669-38817688 Msa0884730:CDS 35.0%
CAGCAGTAATATCCATTGTT+AGG - chr6_1:38817755-38817774 None:intergenic 35.0%
ACAATGGATATTACTGCTGT+TGG + chr6_1:38817756-38817775 Msa0884730:CDS 35.0%
ATTACTGCTGTTGGAACAAA+AGG + chr6_1:38817765-38817784 Msa0884730:CDS 35.0%
GATGCTTTCTTCTCTTCATA+AGG - chr6_1:38817819-38817838 None:intergenic 35.0%
! TTGATGATCTTGTCACTAGA+TGG + chr6_1:38817865-38817884 Msa0884730:CDS 35.0%
TGATGATCTTGTCACTAGAT+GGG + chr6_1:38817866-38817885 Msa0884730:CDS 35.0%
AATAGAAAATGATCTCCCTC+AGG + chr6_1:38817911-38817930 Msa0884730:CDS 35.0%
CAAATTCAAAAACGCGAAAC+CGG + chr6_1:38817977-38817996 Msa0884730:CDS 35.0%
TTTCATTCCTGAATCTGTAC+AGG - chr6_1:38818083-38818102 None:intergenic 35.0%
TTATTGCGACGCACTAATAA+CGG - chr6_1:38818150-38818169 None:intergenic 35.0%
!! TATGACCTTCAAGTTGAAAG+AGG + chr6_1:38818240-38818259 Msa0884730:three_prime_UTR 35.0%
!! ATGACCTTCAAGTTGAAAGA+GGG + chr6_1:38818241-38818260 Msa0884730:three_prime_UTR 35.0%
GAGTGGTTATGATAGTACAG+TGG - chr6_1:38814663-38814682 None:intergenic 40.0%
GTTATTGAGTTTAGCGAAGG+TGG - chr6_1:38814885-38814904 None:intergenic 40.0%
! TTCATAGGAGCCGTAGATTT+TGG - chr6_1:38814921-38814940 None:intergenic 40.0%
GTCGTCAAGAACTTCTTCAT+AGG - chr6_1:38814936-38814955 None:intergenic 40.0%
GGTAAACAGCGTCAACATTA+GGG - chr6_1:38814958-38814977 None:intergenic 40.0%
AGGTAAACAGCGTCAACATT+AGG - chr6_1:38814959-38814978 None:intergenic 40.0%
GGAGTTTGATGAGATTGTGA+AGG + chr6_1:38815075-38815094 Msa0884730:CDS 40.0%
AGTTTATGGATGGGACTATG+TGG + chr6_1:38815119-38815138 Msa0884730:CDS 40.0%
!! ATGAAGGGGTTTTTGGAAGA+TGG + chr6_1:38815166-38815185 Msa0884730:CDS 40.0%
!! TGAAGGGGTTTTTGGAAGAT+GGG + chr6_1:38815167-38815186 Msa0884730:CDS 40.0%
CTATGTTAGTGTTGTGTCAG+TGG - chr6_1:38815548-38815567 None:intergenic 40.0%
AGTTTAAGAGCTCGATTGCT+AGG + chr6_1:38815664-38815683 Msa0884730:intron 40.0%
TGATCTGAACAAGTTTGAGC+AGG + chr6_1:38815708-38815727 Msa0884730:intron 40.0%
CAAGTTTGAGCAGGTTAACT+CGG + chr6_1:38815717-38815736 Msa0884730:intron 40.0%
CGAGGACATTTGATATGTTG+GGG - chr6_1:38816335-38816354 None:intergenic 40.0%
!! CCAATTGGCTATTGATTTGG+GGG + chr6_1:38816445-38816464 Msa0884730:intron 40.0%
!! CAATTGGCTATTGATTTGGG+GGG + chr6_1:38816446-38816465 Msa0884730:intron 40.0%
TTGGCTTAGTGTATAGAGAG+TGG + chr6_1:38816905-38816924 Msa0884730:intron 40.0%
! TTGTATTTGTTGACGATGCC+TGG + chr6_1:38817140-38817159 Msa0884730:intron 40.0%
! TGTATTTGTTGACGATGCCT+GGG + chr6_1:38817141-38817160 Msa0884730:intron 40.0%
ATGTCGTTCTCGAGAAAATC+AGG - chr6_1:38817513-38817532 None:intergenic 40.0%
ACGAAGGATGGTATTGTGTT+AGG + chr6_1:38817574-38817593 Msa0884730:CDS 40.0%
CGAAGGATGGTATTGTGTTA+GGG + chr6_1:38817575-38817594 Msa0884730:CDS 40.0%
ATTGTGTTAGGGCAATTCTG+TGG + chr6_1:38817586-38817605 Msa0884730:CDS 40.0%
TTGTGTTAGGGCAATTCTGT+GGG + chr6_1:38817587-38817606 Msa0884730:CDS 40.0%
!! ACTCCAGCTTTATTAAGCAC+TGG - chr6_1:38817657-38817676 None:intergenic 40.0%
!!! GCTTCGTTATTTTGGGAAGA+TGG + chr6_1:38817693-38817712 Msa0884730:CDS 40.0%
GATGATCTTGTCACTAGATG+GGG + chr6_1:38817867-38817886 Msa0884730:CDS 40.0%
! GGTAACCGAATTTTCTCGTT+TGG + chr6_1:38817944-38817963 Msa0884730:CDS 40.0%
! AACCGAATTTTCTCGTTTGG+TGG + chr6_1:38817947-38817966 Msa0884730:CDS 40.0%
TGCCACCAAACGAGAAAATT+CGG - chr6_1:38817952-38817971 None:intergenic 40.0%
AGAAATGGCCGACAATTAGT+AGG + chr6_1:38818003-38818022 Msa0884730:CDS 40.0%
AACACAACTGATATTGGACG+CGG + chr6_1:38818028-38818047 Msa0884730:CDS 40.0%
GTGAAGGCTTCGATTGATAA+GGG + chr6_1:38818050-38818069 Msa0884730:CDS 40.0%
! TTTTGAGCCTGTACAGATTC+AGG + chr6_1:38818073-38818092 Msa0884730:CDS 40.0%
CAGTATTGCTGTCATGTATG+TGG + chr6_1:38818200-38818219 Msa0884730:three_prime_UTR 40.0%
TATTGCTGTCATGTATGTGG+TGG + chr6_1:38818203-38818222 Msa0884730:three_prime_UTR 40.0%
TGCGTCACAATTATTGGAAC+TGG - chr6_1:38818307-38818326 None:intergenic 40.0%
CAAACCGAACCAATCCGTTT+CGG + chr6_1:38814755-38814774 Msa0884730:CDS 45.0%
!! AATGCCGAAACGGATTGGTT+CGG - chr6_1:38814762-38814781 None:intergenic 45.0%
TTTAGCGAAGGTGGTTGCTT+TGG - chr6_1:38814876-38814895 None:intergenic 45.0%
! ATAGGAGCCGTAGATTTTGG+CGG - chr6_1:38814918-38814937 None:intergenic 45.0%
! TGTTTTGCTTGAGAAGCCTG+TGG + chr6_1:38815039-38815058 Msa0884730:CDS 45.0%
! TGAGATTGTGAAGGTGTGTG+AGG + chr6_1:38815084-38815103 Msa0884730:CDS 45.0%
GTGGATGCATCATCCTAGAA+CGG + chr6_1:38815138-38815157 Msa0884730:CDS 45.0%
!! GAAGGGGTTTTTGGAAGATG+GGG + chr6_1:38815168-38815187 Msa0884730:CDS 45.0%
TTGGAAGATGGGGAGAAGTT+TGG + chr6_1:38815178-38815197 Msa0884730:CDS 45.0%
TGGAAGATGGGGAGAAGTTT+GGG + chr6_1:38815179-38815198 Msa0884730:CDS 45.0%
CTACGTGTCAGTATCGTGTT+AGG - chr6_1:38815793-38815812 None:intergenic 45.0%
! AAGCGATTCGGGGCTTAAAA+CGG + chr6_1:38815847-38815866 Msa0884730:intron 45.0%
ACATTTGATATGTTGGGGCG+CGG - chr6_1:38816330-38816349 None:intergenic 45.0%
TCAGTCGATAAAAGGCTACG+AGG - chr6_1:38816353-38816372 None:intergenic 45.0%
AGTGCAGCTCAGTCGATAAA+AGG - chr6_1:38816361-38816380 None:intergenic 45.0%
ATCGACTGAGCTGCACTTAT+AGG + chr6_1:38816364-38816383 Msa0884730:intron 45.0%
ATGCAGAAGCCAGTTTCATG+TGG - chr6_1:38816412-38816431 None:intergenic 45.0%
CCCCCAAATCAATAGCCAAT+TGG - chr6_1:38816448-38816467 None:intergenic 45.0%
CCATTTGATTCAGAAACGCC+AGG - chr6_1:38817114-38817133 None:intergenic 45.0%
CCTGGCGTTTCTGAATCAAA+TGG + chr6_1:38817111-38817130 Msa0884730:intron 45.0%
! CGCGAGGCTAATACTGTTTT+TGG - chr6_1:38817630-38817649 None:intergenic 45.0%
GAGCCAGTGCTTAATAAAGC+TGG + chr6_1:38817651-38817670 Msa0884730:CDS 45.0%
!! TTGCGGCGCTTCGTTATTTT+GGG + chr6_1:38817686-38817705 Msa0884730:CDS 45.0%
AGAAAATGATCTCCCTCAGG+AGG + chr6_1:38817914-38817933 Msa0884730:CDS 45.0%
TTACCATAAGAGCCTCCTGA+GGG - chr6_1:38817929-38817948 None:intergenic 45.0%
ATTGTCGGCCATTTCTTCTC+CGG - chr6_1:38817999-38818018 None:intergenic 45.0%
GGTGAAGGCTTCGATTGATA+AGG + chr6_1:38818049-38818068 Msa0884730:CDS 45.0%
ACAAAGATCCGAGTTCAGCA+GGG - chr6_1:38818126-38818145 None:intergenic 45.0%
AACAAAGATCCGAGTTCAGC+AGG - chr6_1:38818127-38818146 None:intergenic 45.0%
!! ACCTTCAAGTTGAAAGAGGG+TGG + chr6_1:38818244-38818263 Msa0884730:three_prime_UTR 45.0%
ACCACCCTCTTTCAACTTGA+AGG - chr6_1:38818248-38818267 None:intergenic 45.0%
TGTGACGCAATTTGTCACTG+TGG + chr6_1:38818318-38818337 Msa0884730:three_prime_UTR 45.0%
! TGTTTTGCGGTTTGAGGGAG+TGG - chr6_1:38814709-38814728 None:intergenic 50.0%
CCAATCCGTTTCGGCATTCT+CGG + chr6_1:38814764-38814783 Msa0884730:CDS 50.0%
! TGAGAGTTTGCGGGCTATGT+CGG - chr6_1:38814795-38814814 None:intergenic 50.0%
!! TGGTTGCTTTGGAGAGAGTG+CGG - chr6_1:38814865-38814884 None:intergenic 50.0%
ACATGCAACGTCGTCGGTAA+CGG - chr6_1:38814983-38815002 None:intergenic 50.0%
CACTTCACATGCAACGTCGT+CGG - chr6_1:38814989-38815008 None:intergenic 50.0%
GACGACGTTGCATGTGAAGT+GGG + chr6_1:38814988-38815007 Msa0884730:CDS 50.0%
TTTGCTTGAGAAGCCTGTGG+CGG + chr6_1:38815042-38815061 Msa0884730:CDS 50.0%
! TGAAGGTGTGTGAGGAGTGT+GGG + chr6_1:38815092-38815111 Msa0884730:CDS 50.0%
TGTGGGGTGCAGTTTATGGA+TGG + chr6_1:38815109-38815128 Msa0884730:CDS 50.0%
GTGGGGTGCAGTTTATGGAT+GGG + chr6_1:38815110-38815129 Msa0884730:CDS 50.0%
GATGCATCATCCTAGAACGG+AGG + chr6_1:38815141-38815160 Msa0884730:CDS 50.0%
TCCTAGAACGGAGGTGATGA+AGG + chr6_1:38815150-38815169 Msa0884730:CDS 50.0%
CCTAGAACGGAGGTGATGAA+GGG + chr6_1:38815151-38815170 Msa0884730:CDS 50.0%
CTAGAACGGAGGTGATGAAG+GGG + chr6_1:38815152-38815171 Msa0884730:CDS 50.0%
! GGAGGTGATGAAGGGGTTTT+TGG + chr6_1:38815159-38815178 Msa0884730:CDS 50.0%
AGATGGGGAGAAGTTTGGGA+AGG + chr6_1:38815183-38815202 Msa0884730:CDS 50.0%
TTTCGCGTCAATGTCGTGTC+AGG - chr6_1:38815274-38815293 None:intergenic 50.0%
GTCAGTATCACTGTCGTCTC+AGG - chr6_1:38815471-38815490 None:intergenic 50.0%
! CTCTAAGGGAAAGCAAACCC+AGG - chr6_1:38817161-38817180 None:intergenic 50.0%
GAACGACATTCGTGTGAAGC+CGG + chr6_1:38817524-38817543 Msa0884730:CDS 50.0%
AAGCCGGATCTAGATGCACT+CGG + chr6_1:38817540-38817559 Msa0884730:CDS 50.0%
! CTTGCGGCGCTTCGTTATTT+TGG + chr6_1:38817685-38817704 Msa0884730:CDS 50.0%
GTTACCATAAGAGCCTCCTG+AGG - chr6_1:38817930-38817949 None:intergenic 50.0%
ACGCGAAACCGGAGAAGAAA+TGG + chr6_1:38817988-38818007 Msa0884730:CDS 50.0%
ACTGATATTGGACGCGGTGA+AGG + chr6_1:38818034-38818053 Msa0884730:CDS 50.0%
TGTCTTCACCCTGCTGAACT+CGG + chr6_1:38818115-38818134 Msa0884730:three_prime_UTR 50.0%
CCGAGAATGCCGAAACGGAT+TGG - chr6_1:38814767-38814786 None:intergenic 55.0%
CGCAACCGAGAATGCCGAAA+CGG - chr6_1:38814772-38814791 None:intergenic 55.0%
AATGGCGCGTGAGAGTTTGC+GGG - chr6_1:38814804-38814823 None:intergenic 55.0%
GAATGGCGCGTGAGAGTTTG+CGG - chr6_1:38814805-38814824 None:intergenic 55.0%
AGATTGTGGCGGTGGAAGAG+AGG - chr6_1:38814829-38814848 None:intergenic 55.0%
!! CGTAGATTTTGGCGGTGGGA+GGG - chr6_1:38814910-38814929 None:intergenic 55.0%
CCTCCCACCGCCAAAATCTA+CGG + chr6_1:38814908-38814927 Msa0884730:CDS 55.0%
!! GAGCCGTAGATTTTGGCGGT+GGG - chr6_1:38814914-38814933 None:intergenic 55.0%
CGACGACGTTGCATGTGAAG+TGG + chr6_1:38814987-38815006 Msa0884730:CDS 55.0%
GACGTTGCATGTGAAGTGGG+CGG + chr6_1:38814991-38815010 Msa0884730:CDS 55.0%
! GTGAAGGTGTGTGAGGAGTG+TGG + chr6_1:38815091-38815110 Msa0884730:CDS 55.0%
! GAAGGTGTGTGAGGAGTGTG+GGG + chr6_1:38815093-38815112 Msa0884730:CDS 55.0%
GGAGTGTGGGGTGCAGTTTA+TGG + chr6_1:38815105-38815124 Msa0884730:CDS 55.0%
CCCTTCATCACCTCCGTTCT+AGG - chr6_1:38815154-38815173 None:intergenic 55.0%
TTTCGCGTCAGTGTCGTGTC+AGG - chr6_1:38815330-38815349 None:intergenic 55.0%
!! GCGGAGAAAAGAGGCATTGC+AGG + chr6_1:38816297-38816316 Msa0884730:intron 55.0%
GAGCCGAGTGCATCTAGATC+CGG - chr6_1:38817546-38817565 None:intergenic 55.0%
CTAGATGCACTCGGCTCTCT+TGG + chr6_1:38817549-38817568 Msa0884730:CDS 55.0%
!! GCTCTCTTGGTGACGAAGGA+TGG + chr6_1:38817562-38817581 Msa0884730:CDS 55.0%
TCTCCCTCAGGAGGCTCTTA+TGG + chr6_1:38817923-38817942 Msa0884730:CDS 55.0%
GGCGGTGGAAGAGAGGAGAA+TGG - chr6_1:38814822-38814841 None:intergenic 60.0%
!! CCGTAGATTTTGGCGGTGGG+AGG - chr6_1:38814911-38814930 None:intergenic 60.0%
!! GGAGCCGTAGATTTTGGCGG+TGG - chr6_1:38814915-38814934 None:intergenic 60.0%
GTTGCATGTGAAGTGGGCGG+TGG + chr6_1:38814994-38815013 Msa0884730:CDS 60.0%
TCCTTCACACTCACCGCCAC+AGG - chr6_1:38815058-38815077 None:intergenic 60.0%
CTGAAACCCTGCTGCATGCC+TGG + chr6_1:38817093-38817112 Msa0884730:intron 60.0%
GAAACGCCAGGCATGCAGCA+GGG - chr6_1:38817102-38817121 None:intergenic 60.0%
AGAAACGCCAGGCATGCAGC+AGG - chr6_1:38817103-38817122 None:intergenic 60.0%
!! CTCGGCTCTCTTGGTGACGA+AGG + chr6_1:38817558-38817577 Msa0884730:CDS 60.0%
!! ATTAAGCACTGGCTCGCGCG+AGG - chr6_1:38817646-38817665 None:intergenic 60.0%
ACCGCCACAATCTCCGCCGT+CGG + chr6_1:38814836-38814855 Msa0884730:CDS 65.0%
TCCGACGGCGGAGATTGTGG+CGG - chr6_1:38814840-38814859 None:intergenic 65.0%
GCTTCCGACGGCGGAGATTG+TGG - chr6_1:38814843-38814862 None:intergenic 65.0%
! GGAGAGAGTGCGGCTTCCGA+CGG - chr6_1:38814855-38814874 None:intergenic 65.0%
! GCAACGTCGTCGGTAACGGC+AGG - chr6_1:38814979-38814998 None:intergenic 65.0%
GCGGTGGCTGCAGCGAAGAA+GGG + chr6_1:38815010-38815029 Msa0884730:CDS 65.0%
CGGTGGCTGCAGCGAAGAAG+GGG + chr6_1:38815011-38815030 Msa0884730:CDS 65.0%
GCCTGTGGCGGTGAGTGTGA+AGG + chr6_1:38815054-38815073 Msa0884730:CDS 65.0%
GACGGCGGAGATTGTGGCGG+TGG - chr6_1:38814837-38814856 None:intergenic 70.0%
! GAGAGTGCGGCTTCCGACGG+CGG - chr6_1:38814852-38814871 None:intergenic 70.0%
GGCGGTGGCTGCAGCGAAGA+AGG + chr6_1:38815009-38815028 Msa0884730:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 38814656 38818389 38814656 ID=Msa0884730;Name=Msa0884730
chr6_1 mRNA 38814656 38818389 38814656 ID=Msa0884730-mRNA-1;Parent=Msa0884730;Name=Msa0884730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=93|1|1|1|1|1|2|289|361
chr6_1 exon 38814656 38815213 38814656 ID=Msa0884730-mRNA-1:exon:8945;Parent=Msa0884730-mRNA-1
chr6_1 exon 38817480 38818389 38817480 ID=Msa0884730-mRNA-1:exon:8946;Parent=Msa0884730-mRNA-1
chr6_1 five_prime_UTR 38814656 38814748 38814656 ID=Msa0884730-mRNA-1:five_prime_utr;Parent=Msa0884730-mRNA-1
chr6_1 CDS 38814749 38815213 38814749 ID=Msa0884730-mRNA-1:cds;Parent=Msa0884730-mRNA-1
chr6_1 CDS 38817480 38818100 38817480 ID=Msa0884730-mRNA-1:cds;Parent=Msa0884730-mRNA-1
chr6_1 three_prime_UTR 38818101 38818389 38818101 ID=Msa0884730-mRNA-1:three_prime_utr;Parent=Msa0884730-mRNA-1
Gene Sequence

>Msa0884730

ATGTCACAAACCGAACCAATCCGTTTCGGCATTCTCGGTTGCGCCGACATAGCCCGCAAACTCTCACGCGCCATTCTCCTCTCTTCCACCGCCACAATCTCCGCCGTCGGAAGCCGCACTCTCTCCAAAGCAACCACCTTCGCTAAACTCAATAACTTCCCTCCCACCGCCAAAATCTACGGCTCCTATGAAGAAGTTCTTGACGACCCTAATGTTGACGCTGTTTACCTGCCGTTACCGACGACGTTGCATGTGAAGTGGGCGGTGGCTGCAGCGAAGAAGGGGAAGCATGTTTTGCTTGAGAAGCCTGTGGCGGTGAGTGTGAAGGAGTTTGATGAGATTGTGAAGGTGTGTGAGGAGTGTGGGGTGCAGTTTATGGATGGGACTATGTGGATGCATCATCCTAGAACGGAGGTGATGAAGGGGTTTTTGGAAGATGGGGAGAAGTTTGGGAAGGTTAAATCGATTCACACCTGTTTTACATTTGGTGCTGATCCTGATTTTCTCGAGAACGACATTCGTGTGAAGCCGGATCTAGATGCACTCGGCTCTCTTGGTGACGAAGGATGGTATTGTGTTAGGGCAATTCTGTGGGCTAACAACTACGAATTACCAAAAACAGTATTAGCCTCGCGCGAGCCAGTGCTTAATAAAGCTGGAGTATTATTATCTTGCGGCGCTTCGTTATTTTGGGAAGATGGAAGAGTAGCAACATTCTATTGCTCTTTCTTATCTAACCTAACAATGGATATTACTGCTGTTGGAACAAAAGGAACACTTCATGTTCATGATTTTATTATCCCTTATGAAGAGAAGAAAGCATCATTTTATGCAGCTTCAGAATCAAGCTTTGATGATCTTGTCACTAGATGGGGTTCGCAGCCGAGTAAGCACGTAATAGAAAATGATCTCCCTCAGGAGGCTCTTATGGTAACCGAATTTTCTCGTTTGGTGGCAGAAATCAAATTCAAAAACGCGAAACCGGAGAAGAAATGGCCGACAATTAGTAGGAAAACACAACTGATATTGGACGCGGTGAAGGCTTCGATTGATAAGGGTTTTGAGCCTGTACAGATTCAGGAATGA

Protein sequence

>Msa0884730

MSQTEPIRFGILGCADIARKLSRAILLSSTATISAVGSRTLSKATTFAKLNNFPPTAKIYGSYEEVLDDPNVDAVYLPLPTTLHVKWAVAAAKKGKHVLLEKPVAVSVKEFDEIVKVCEECGVQFMDGTMWMHHPRTEVMKGFLEDGEKFGKVKSIHTCFTFGADPDFLENDIRVKPDLDALGSLGDEGWYCVRAILWANNYELPKTVLASREPVLNKAGVLLSCGASLFWEDGRVATFYCSFLSNLTMDITAVGTKGTLHVHDFIIPYEEKKASFYAASESSFDDLVTRWGSQPSKHVIENDLPQEALMVTEFSRLVAEIKFKNAKPEKKWPTISRKTQLILDAVKASIDKGFEPVQIQE*