AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0619170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619170 MtrunA17_Chr8g0383001 82.692 208 5 2 1 177 1 208 1.51e-116 335
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619170 AT2G21960.1 67.097 155 26 1 48 177 50 204 3.82e-65 204

Find 60 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTTGGCTTACCCATTT+TGG 0.102537 4_2:-70240251 Msa0619170:three_prime_UTR
GAAGCTCTGGTTGTGAATTT+AGG 0.115841 4_2:+70242612 None:intergenic
ATTCTGGCTGGCCAGCTTCC+CGG 0.227667 4_2:-70241478 Msa0619170:CDS
ATCCAGTGAATATCCCAAAA+TGG 0.251435 4_2:+70240237 None:intergenic
AACTGGATTCTTGGGTATTC+TGG 0.263208 4_2:-70241494 Msa0619170:CDS
CTTGATCAACTGAGTGAAAT+TGG 0.263702 4_2:-70242264 Msa0619170:CDS
TTCTGGCTGGCCAGCTTCCC+GGG 0.284405 4_2:-70241477 Msa0619170:CDS
GCAATCCTTTCTTGATAATC+AGG 0.293245 4_2:+70240429 None:intergenic
AAGCTCTGGTTGTGAATTTA+GGG 0.294762 4_2:+70242613 None:intergenic
TTGGGATATTCACTGGATAT+TGG 0.298796 4_2:-70240232 Msa0619170:three_prime_UTR
TTCTTTGTACCATACTTGAT+TGG 0.309773 4_2:-70240622 Msa0619170:CDS
AGTATTTCCTTAGTGGTATT+GGG 0.320539 4_2:-70240598 Msa0619170:CDS
TGGCTGAGAACTCCATTTCT+TGG 0.327017 4_2:+70242236 None:intergenic
TTTACTGTGGTTGGAACAAC+TGG 0.327694 4_2:-70241511 Msa0619170:CDS
GGTTGGAACAACTGGATTCT+TGG 0.341417 4_2:-70241503 Msa0619170:CDS
TTTCTAGTTGCTTATCTGCT+TGG 0.354201 4_2:-70240265 Msa0619170:exon
TGTAATTGTTTCAACCTCAT+TGG 0.361791 4_2:+70242769 None:intergenic
TTTGGTGGTGATGATGATTA+TGG 0.373375 4_2:+70242655 None:intergenic
ATATCAGCCATAAAAGCAAT+AGG 0.376292 4_2:+70240373 None:intergenic
GAGTATTTCCTTAGTGGTAT+TGG 0.376884 4_2:-70240599 Msa0619170:CDS
GGTTGATGTTGAAGCATGTT+TGG 0.383493 4_2:+70242637 None:intergenic
TCCTTAGTGGTATTGGGTAT+AGG 0.386228 4_2:-70240592 Msa0619170:CDS
GAAATACTCCCAATCAAGTA+TGG 0.386262 4_2:+70240613 None:intergenic
GATTGGGAGTATTTCCTTAG+TGG 0.396031 4_2:-70240605 Msa0619170:CDS
TCTTTGTACCATACTTGATT+GGG 0.396789 4_2:-70240621 Msa0619170:CDS
TGCAGCAGAGGAAGAAGCTC+TGG 0.413680 4_2:+70242599 None:intergenic
TCAACCTCATTGGAGGGTGC+AGG 0.438833 4_2:+70242779 None:intergenic
AAATTGGTTGGGCCAAGAAA+TGG 0.440413 4_2:-70242248 Msa0619170:CDS
TGAGAGTTGAGAAGCTTTGT+GGG 0.445509 4_2:+70242824 None:intergenic
TCCAGTGAATATCCCAAAAT+GGG 0.449171 4_2:+70240238 None:intergenic
GCTTCTTCCTCTGCTGCACC+TGG 0.456080 4_2:-70242594 Msa0619170:CDS
TTGAGAGTTGAGAAGCTTTG+TGG 0.466186 4_2:+70242823 None:intergenic
GTTGGAACAACTGGATTCTT+GGG 0.483037 4_2:-70241502 Msa0619170:CDS
GGATTCTTGGGTATTCTGGC+TGG 0.487468 4_2:-70241490 Msa0619170:CDS
GGATACATACCCCGGGAAGC+TGG 0.488405 4_2:+70241467 None:intergenic
AGACAGCAATGCAGTTAAAG+AGG 0.489669 4_2:-70242289 Msa0619170:CDS
GGTATAGGCAGCACATCTCC+TGG 0.494301 4_2:-70240577 Msa0619170:CDS
TATCAGCCATAAAAGCAATA+GGG 0.498979 4_2:+70240374 None:intergenic
GTCGACACCAGGTGCAGCAG+AGG 0.506013 4_2:+70242587 None:intergenic
ACCGTACGACGTGAAACATA+TGG 0.511639 4_2:+70242216 None:intergenic
TGTTGACTGATGCAGGATTG+GGG 0.521890 4_2:-70240646 Msa0619170:intron
GCCATATGTTTCACGTCGTA+CGG 0.524271 4_2:-70242217 Msa0619170:intron
AATTGTTTCAACCTCATTGG+AGG 0.529140 4_2:+70242772 None:intergenic
TTGGGTAAAGATGATGAGTA+AGG 0.530143 4_2:+70242696 None:intergenic
ATCAACTGAGTGAAATTGGT+TGG 0.534376 4_2:-70242260 Msa0619170:CDS
GCCTATACCCAATACCACTA+AGG 0.541332 4_2:+70240591 None:intergenic
TCAACTGAGTGAAATTGGTT+GGG 0.547534 4_2:-70242259 Msa0619170:CDS
AAAAGCTGCTAATAGCTGCT+TGG 0.552163 4_2:+70240463 None:intergenic
ATTGTTTCAACCTCATTGGA+GGG 0.569041 4_2:+70242773 None:intergenic
TGATGTTGAAGCATGTTTGG+TGG 0.574649 4_2:+70242640 None:intergenic
CAGGTTGCAGTAGATAAGAA+AGG 0.575092 4_2:+70242798 None:intergenic
TCTTGATTCTGCCATTGCCA+AGG 0.579069 4_2:-70242556 Msa0619170:intron
CTCTGGTTGTGAATTTAGGG+AGG 0.583321 4_2:+70242616 None:intergenic
ATGGTCAATTACCTTGGCAA+TGG 0.596299 4_2:+70242545 None:intergenic
AGAGTGTTGAGGTCGACACC+AGG 0.613261 4_2:+70242576 None:intergenic
TCTGGCTGGCCAGCTTCCCG+GGG 0.613765 4_2:-70241476 Msa0619170:intron
GTATAGGCAGCACATCTCCT+GGG 0.621976 4_2:-70240576 Msa0619170:intron
TGGCAGAATCAAGAGTGTTG+AGG 0.645439 4_2:+70242565 None:intergenic
GCAACCTGCACCCTCCAATG+AGG 0.659790 4_2:-70242783 Msa0619170:five_prime_UTR
TAAAGATGATGAGTAAGGCA+TGG 0.722574 4_2:+70242701 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATTATAATATGGTTT+GGG + chr4_2:70240357-70240376 None:intergenic 10.0%
!! TTATGGTAAAAATTATAATA+TGG + chr4_2:70240363-70240382 None:intergenic 10.0%
!! GTAAAAATTATAATATGGTT+TGG + chr4_2:70240358-70240377 None:intergenic 15.0%
!! ACTTCAAATAAAAAATGTAA+TGG + chr4_2:70240509-70240528 None:intergenic 15.0%
!!! TTAAAAAGGAAATTTTATCT+TGG - chr4_2:70241134-70241153 Msa0619170:intron 15.0%
!!! TAAAAAGGAAATTTTATCTT+GGG - chr4_2:70241135-70241154 Msa0619170:intron 15.0%
!! GCATATGAATATTTAAATAT+GGG + chr4_2:70241249-70241268 None:intergenic 15.0%
!! TGCATATGAATATTTAAATA+TGG + chr4_2:70241250-70241269 None:intergenic 15.0%
!! AGTTATATAAAAATTACACG+AGG - chr4_2:70240526-70240545 Msa0619170:intron 20.0%
!!! TAAATATTTGGAAGAAGTAT+TGG + chr4_2:70241070-70241089 None:intergenic 20.0%
!! TACTTCTTCCAAATATTTAA+AGG - chr4_2:70241071-70241090 Msa0619170:intron 20.0%
!! ACTTCTTCCAAATATTTAAA+GGG - chr4_2:70241072-70241091 Msa0619170:intron 20.0%
!! AACATTTCCCTTTAAATATT+TGG + chr4_2:70241082-70241101 None:intergenic 20.0%
!!! ACTTGTTAAGAAGTTTAAAA+AGG - chr4_2:70241120-70241139 Msa0619170:intron 20.0%
!!! AAGTGTAAATATTTTAGAAC+TGG - chr4_2:70242222-70242241 Msa0619170:CDS 20.0%
!! TCTAATTAATATGTTAGTGT+AGG - chr4_2:70242541-70242560 Msa0619170:intron 20.0%
!! ATGGATTGAATACAATTTCA+CGG + chr4_2:70240642-70240661 None:intergenic 25.0%
! CAGAACATCAACATTTATAA+TGG + chr4_2:70240848-70240867 None:intergenic 25.0%
! CATTATAAATGTTGATGTTC+TGG - chr4_2:70240846-70240865 Msa0619170:intron 25.0%
!! AACTTTAGGGATTAAAAATG+CGG - chr4_2:70241331-70241350 Msa0619170:intron 25.0%
!!! TCTATTTTTGCAGTATCAAA+TGG - chr4_2:70241408-70241427 Msa0619170:intron 25.0%
! GTATCAAATGGAATTATACA+TGG - chr4_2:70241420-70241439 Msa0619170:intron 25.0%
!! AGATAAATTTGGAATTGGAA+TGG + chr4_2:70241748-70241767 None:intergenic 25.0%
!! TACTCAGATAAATTTGGAAT+TGG + chr4_2:70241753-70241772 None:intergenic 25.0%
!! TCAAAGTACTCAGATAAATT+TGG + chr4_2:70241759-70241778 None:intergenic 25.0%
! ATAATCCATAAAAGACTACA+AGG + chr4_2:70241932-70241951 None:intergenic 25.0%
!! TGAAAAAGGAAATTCCATTT+TGG + chr4_2:70242012-70242031 None:intergenic 25.0%
!!! TTCTGCATTATGCTTTTTTT+AGG - chr4_2:70242103-70242122 Msa0619170:intron 25.0%
!!! TCTGCATTATGCTTTTTTTA+GGG - chr4_2:70242104-70242123 Msa0619170:intron 25.0%
!!! CCATTTTCACTTTGTTATTT+AGG + chr4_2:70242272-70242291 None:intergenic 25.0%
! CCTAAATAACAAAGTGAAAA+TGG - chr4_2:70242269-70242288 Msa0619170:CDS 25.0%
!! TAATTAGAGCATTAATGCTA+TGG + chr4_2:70242529-70242548 None:intergenic 25.0%
!! TTTTTCCTGATTATCAAGAA+AGG - chr4_2:70242598-70242617 Msa0619170:CDS 25.0%
TGTAATTGTTTCAACCTCAT+TGG + chr4_2:70240266-70240285 None:intergenic 30.0%
AATGTAATGGTCAATTACCT+TGG + chr4_2:70240496-70240515 None:intergenic 30.0%
TGGATTGAATACAATTTCAC+GGG + chr4_2:70240641-70240660 None:intergenic 30.0%
CAATCCATTGTTCATTGAAA+TGG - chr4_2:70240654-70240673 Msa0619170:intron 30.0%
ACTACCATTTCAATGAACAA+TGG + chr4_2:70240661-70240680 None:intergenic 30.0%
AAATGGTAGTTTATACCGTT+TGG - chr4_2:70240671-70240690 Msa0619170:intron 30.0%
AATGGTAGTTTATACCGTTT+GGG - chr4_2:70240672-70240691 Msa0619170:intron 30.0%
GTTCAGTTATATTACCCAAA+CGG + chr4_2:70240689-70240708 None:intergenic 30.0%
CAATGTAACAATATGTGTTG+TGG + chr4_2:70240973-70240992 None:intergenic 30.0%
AATATTTAACTAGTGCCCTA+AGG - chr4_2:70241207-70241226 Msa0619170:intron 30.0%
ATATTTAACTAGTGCCCTAA+GGG - chr4_2:70241208-70241227 Msa0619170:intron 30.0%
ACATATAACACAGATCTTTG+TGG - chr4_2:70241481-70241500 Msa0619170:CDS 30.0%
AGAGTTAAAAGAAGCCAAAA+TGG - chr4_2:70241995-70242014 Msa0619170:intron 30.0%
TAGCAATTGTTCAAAAGAAG+TGG + chr4_2:70242068-70242087 None:intergenic 30.0%
GTAAGAAGGTGAAAACTATT+GGG + chr4_2:70242326-70242345 None:intergenic 30.0%
AGTAAGAAGGTGAAAACTAT+TGG + chr4_2:70242327-70242346 None:intergenic 30.0%
! TGATAAATGAGAGAGTTGAT+GGG + chr4_2:70242351-70242370 None:intergenic 30.0%
ATGATAAATGAGAGAGTTGA+TGG + chr4_2:70242352-70242371 None:intergenic 30.0%
TTCTTTGTACCATACTTGAT+TGG - chr4_2:70242410-70242429 Msa0619170:intron 30.0%
TCTTTGTACCATACTTGATT+GGG - chr4_2:70242411-70242430 Msa0619170:intron 30.0%
AGTATTTCCTTAGTGGTATT+GGG - chr4_2:70242434-70242453 Msa0619170:intron 30.0%
TATCAGCCATAAAAGCAATA+GGG + chr4_2:70242661-70242680 None:intergenic 30.0%
ATATCAGCCATAAAAGCAAT+AGG + chr4_2:70242662-70242681 None:intergenic 30.0%
ATTGTTTCAACCTCATTGGA+GGG + chr4_2:70240262-70240281 None:intergenic 35.0%
AATTGTTTCAACCTCATTGG+AGG + chr4_2:70240263-70240282 None:intergenic 35.0%
TAAAGATGATGAGTAAGGCA+TGG + chr4_2:70240334-70240353 None:intergenic 35.0%
TTGGGTAAAGATGATGAGTA+AGG + chr4_2:70240339-70240358 None:intergenic 35.0%
!! TTTGGTGGTGATGATGATTA+TGG + chr4_2:70240380-70240399 None:intergenic 35.0%
! AAGCTCTGGTTGTGAATTTA+GGG + chr4_2:70240422-70240441 None:intergenic 35.0%
GGATTGAATACAATTTCACG+GGG + chr4_2:70240640-70240659 None:intergenic 35.0%
CTTGATCAACTGAGTGAAAT+TGG - chr4_2:70240768-70240787 Msa0619170:intron 35.0%
ATCAACTGAGTGAAATTGGT+TGG - chr4_2:70240772-70240791 Msa0619170:intron 35.0%
TCAACTGAGTGAAATTGGTT+GGG - chr4_2:70240773-70240792 Msa0619170:intron 35.0%
! GTGAAGTGTTAGTGCTATAT+AGG + chr4_2:70240906-70240925 None:intergenic 35.0%
TAACACTTCACTTCAGATTG+AGG - chr4_2:70240915-70240934 Msa0619170:intron 35.0%
AACACTTCACTTCAGATTGA+GGG - chr4_2:70240916-70240935 Msa0619170:intron 35.0%
! AGTAACAAAGAAGAGTGCAA+GGG + chr4_2:70241589-70241608 None:intergenic 35.0%
! AAGTAACAAAGAAGAGTGCA+AGG + chr4_2:70241590-70241609 None:intergenic 35.0%
!! AGTAGTGTTATTTGCAAGTG+TGG - chr4_2:70241670-70241689 Msa0619170:intron 35.0%
AAGTGTGGATATAGCATTCA+TGG - chr4_2:70241685-70241704 Msa0619170:intron 35.0%
AATTTGATGTCGCAATGAAG+CGG + chr4_2:70241801-70241820 None:intergenic 35.0%
CTACAGCTTGAAATTATGAC+TGG - chr4_2:70241887-70241906 Msa0619170:intron 35.0%
CAGAAGTTTAAGAATGTCCT+TGG - chr4_2:70242187-70242206 Msa0619170:intron 35.0%
! CACTTTTCACTTATCTACCA+AGG + chr4_2:70242207-70242226 None:intergenic 35.0%
GGCATAACAAGCAAGTTAAA+AGG + chr4_2:70242251-70242270 None:intergenic 35.0%
GAAATACTCCCAATCAAGTA+TGG + chr4_2:70242422-70242441 None:intergenic 35.0%
GAGTATTTCCTTAGTGGTAT+TGG - chr4_2:70242433-70242452 Msa0619170:intron 35.0%
TAAGTACTACGCTTACAAGT+TGG - chr4_2:70242479-70242498 Msa0619170:intron 35.0%
! GCAATCCTTTCTTGATAATC+AGG + chr4_2:70242606-70242625 None:intergenic 35.0%
!! TTTCTAGTTGCTTATCTGCT+TGG - chr4_2:70242767-70242786 Msa0619170:five_prime_UTR 35.0%
TCCAGTGAATATCCCAAAAT+GGG + chr4_2:70242797-70242816 None:intergenic 35.0%
ATCCAGTGAATATCCCAAAA+TGG + chr4_2:70242798-70242817 None:intergenic 35.0%
TTGGGATATTCACTGGATAT+TGG - chr4_2:70242800-70242819 Msa0619170:five_prime_UTR 35.0%
CAGGTTGCAGTAGATAAGAA+AGG + chr4_2:70240237-70240256 None:intergenic 40.0%
TGATGTTGAAGCATGTTTGG+TGG + chr4_2:70240395-70240414 None:intergenic 40.0%
! GGTTGATGTTGAAGCATGTT+TGG + chr4_2:70240398-70240417 None:intergenic 40.0%
! GAAGCTCTGGTTGTGAATTT+AGG + chr4_2:70240423-70240442 None:intergenic 40.0%
ATGGTCAATTACCTTGGCAA+TGG + chr4_2:70240490-70240509 None:intergenic 40.0%
ACGAGGTTATACTCGATGAT+GGG - chr4_2:70240543-70240562 Msa0619170:intron 40.0%
AGACAGCAATGCAGTTAAAG+AGG - chr4_2:70240743-70240762 Msa0619170:intron 40.0%
AAATTGGTTGGGCCAAGAAA+TGG - chr4_2:70240784-70240803 Msa0619170:intron 40.0%
! ATGTTCTGGATAGATGCCAA+GGG - chr4_2:70240860-70240879 Msa0619170:intron 40.0%
TTGCTTATTGCTATGTCCCT+TGG + chr4_2:70240879-70240898 None:intergenic 40.0%
GGTGTATCTTACATGTGTTG+TGG - chr4_2:70240937-70240956 Msa0619170:intron 40.0%
AAATGTTAACACGTGCCCTT+GGG - chr4_2:70241095-70241114 Msa0619170:intron 40.0%
CTTGTTAACCAATGCCCTTA+GGG + chr4_2:70241225-70241244 None:intergenic 40.0%
TCTTGTTAACCAATGCCCTT+AGG + chr4_2:70241226-70241245 None:intergenic 40.0%
TGATGTCTGTCGCACAAATT+TGG + chr4_2:70241297-70241316 None:intergenic 40.0%
TTCGAGAGCTGACAACTTTA+GGG - chr4_2:70241318-70241337 Msa0619170:intron 40.0%
TTCTGACACTAGGAATTGCA+AGG + chr4_2:70241361-70241380 None:intergenic 40.0%
CTCACATCATTTCTGACACT+AGG + chr4_2:70241371-70241390 None:intergenic 40.0%
! GCTTTTCTCTTTACTGTGGT+TGG - chr4_2:70241512-70241531 Msa0619170:CDS 40.0%
TTTACTGTGGTTGGAACAAC+TGG - chr4_2:70241521-70241540 Msa0619170:CDS 40.0%
GTTGGAACAACTGGATTCTT+GGG - chr4_2:70241530-70241549 Msa0619170:intron 40.0%
AACTGGATTCTTGGGTATTC+TGG - chr4_2:70241538-70241557 Msa0619170:intron 40.0%
GCATTCATGGTTTCACATTG+TGG - chr4_2:70241698-70241717 Msa0619170:intron 40.0%
AGCTTGAAATTATGACTGGC+AGG - chr4_2:70241891-70241910 Msa0619170:intron 40.0%
!!! GGTAGCCTTGTAGTCTTTTA+TGG - chr4_2:70241924-70241943 Msa0619170:intron 40.0%
ACTTGTGATGCAGGTGAAAA+AGG + chr4_2:70242026-70242045 None:intergenic 40.0%
GTAGACTAAACTTGTGATGC+AGG + chr4_2:70242035-70242054 None:intergenic 40.0%
!! TGTCTCCTCTTTGAAGTTGA+CGG - chr4_2:70242135-70242154 Msa0619170:intron 40.0%
!! AGAGTTGATGGGAAGTAAGA+AGG + chr4_2:70242340-70242359 None:intergenic 40.0%
! TAATGCTTGTTGACTGATGC+AGG - chr4_2:70242379-70242398 Msa0619170:intron 40.0%
! TTGTTGACTGATGCAGGATT+GGG - chr4_2:70242385-70242404 Msa0619170:intron 40.0%
!! GATTGGGAGTATTTCCTTAG+TGG - chr4_2:70242427-70242446 Msa0619170:intron 40.0%
! TCCTTAGTGGTATTGGGTAT+AGG - chr4_2:70242440-70242459 Msa0619170:intron 40.0%
AAAAGCTGCTAATAGCTGCT+TGG + chr4_2:70242572-70242591 None:intergenic 40.0%
TAGGGCAGTACTCAAAAAGT+GGG + chr4_2:70242643-70242662 None:intergenic 40.0%
ATAGGGCAGTACTCAAAAAG+TGG + chr4_2:70242644-70242663 None:intergenic 40.0%
!! GTACTGCCCTATTGCTTTTA+TGG - chr4_2:70242652-70242671 Msa0619170:CDS 40.0%
!!! ACCCATTTTGGGATATTCAC+TGG - chr4_2:70242793-70242812 Msa0619170:five_prime_UTR 40.0%
CTCTGGTTGTGAATTTAGGG+AGG + chr4_2:70240419-70240438 None:intergenic 45.0%
!! TGGCAGAATCAAGAGTGTTG+AGG + chr4_2:70240470-70240489 None:intergenic 45.0%
TCTTGATTCTGCCATTGCCA+AGG - chr4_2:70240476-70240495 Msa0619170:intron 45.0%
CACGAGGTTATACTCGATGA+TGG - chr4_2:70240542-70240561 Msa0619170:intron 45.0%
CGAGGTTATACTCGATGATG+GGG - chr4_2:70240544-70240563 Msa0619170:intron 45.0%
TGGCTGAGAACTCCATTTCT+TGG + chr4_2:70240799-70240818 None:intergenic 45.0%
GCCATATGTTTCACGTCGTA+CGG - chr4_2:70240815-70240834 Msa0619170:intron 45.0%
ACCGTACGACGTGAAACATA+TGG + chr4_2:70240819-70240838 None:intergenic 45.0%
! GATGTTCTGGATAGATGCCA+AGG - chr4_2:70240859-70240878 Msa0619170:intron 45.0%
GAAATGTTAACACGTGCCCT+TGG - chr4_2:70241094-70241113 Msa0619170:intron 45.0%
AATGTTAACACGTGCCCTTG+GGG - chr4_2:70241096-70241115 Msa0619170:intron 45.0%
CTTCTTAACAAGTGCCCCAA+GGG + chr4_2:70241113-70241132 None:intergenic 45.0%
ACTTCTTAACAAGTGCCCCA+AGG + chr4_2:70241114-70241133 None:intergenic 45.0%
TCTGTCGCACAAATTTGGAG+AGG + chr4_2:70241292-70241311 None:intergenic 45.0%
CTTCGAGAGCTGACAACTTT+AGG - chr4_2:70241317-70241336 Msa0619170:intron 45.0%
AACACAGATCTTTGTGGTGC+AGG - chr4_2:70241487-70241506 Msa0619170:CDS 45.0%
! GGCAGCTTTTCTCTTTACTG+TGG - chr4_2:70241508-70241527 Msa0619170:CDS 45.0%
GGTTGGAACAACTGGATTCT+TGG - chr4_2:70241529-70241548 Msa0619170:intron 45.0%
ATTATGACTGGCAGGCCATT+TGG - chr4_2:70241899-70241918 Msa0619170:intron 45.0%
!! GTCTCCTCTTTGAAGTTGAC+GGG - chr4_2:70242136-70242155 Msa0619170:intron 45.0%
! CTTGTTGACTGATGCAGGAT+TGG - chr4_2:70242384-70242403 Msa0619170:intron 45.0%
! TGTTGACTGATGCAGGATTG+GGG - chr4_2:70242386-70242405 Msa0619170:intron 45.0%
GCCTATACCCAATACCACTA+AGG + chr4_2:70242444-70242463 None:intergenic 45.0%
TGTAAGCGTAGTACTTACCC+AGG + chr4_2:70242476-70242495 None:intergenic 45.0%
GCTATGGCAAACACTGAAGA+GGG + chr4_2:70242513-70242532 None:intergenic 45.0%
TGCTATGGCAAACACTGAAG+AGG + chr4_2:70242514-70242533 None:intergenic 45.0%
! TCTGCTTGGCTTACCCATTT+TGG - chr4_2:70242781-70242800 Msa0619170:five_prime_UTR 45.0%
! CTGCTTGGCTTACCCATTTT+GGG - chr4_2:70242782-70242801 Msa0619170:five_prime_UTR 45.0%
!! CTCGATGATGGGGAACATGA+AGG - chr4_2:70240554-70240573 Msa0619170:intron 50.0%
! AACTAGTGCCCTAAGGGCAT+TGG - chr4_2:70241214-70241233 Msa0619170:intron 50.0%
GGATTCTTGGGTATTCTGGC+TGG - chr4_2:70241542-70241561 Msa0619170:intron 50.0%
AGTGCAAGGGATACATACCC+CGG + chr4_2:70241576-70241595 None:intergenic 50.0%
CTACAAGGCTACCAGCCAAA+TGG + chr4_2:70241917-70241936 None:intergenic 50.0%
TGAGCCCGTCAACTTCAAAG+AGG + chr4_2:70242143-70242162 None:intergenic 50.0%
GTATAGGCAGCACATCTCCT+GGG - chr4_2:70242456-70242475 Msa0619170:intron 50.0%
! TCAACCTCATTGGAGGGTGC+AGG + chr4_2:70240256-70240275 None:intergenic 55.0%
TGCAGCAGAGGAAGAAGCTC+TGG + chr4_2:70240436-70240455 None:intergenic 55.0%
!! AGAGTGTTGAGGTCGACACC+AGG + chr4_2:70240459-70240478 None:intergenic 55.0%
GTGCAAGGGATACATACCCC+GGG + chr4_2:70241575-70241594 None:intergenic 55.0%
GGTATAGGCAGCACATCTCC+TGG - chr4_2:70242455-70242474 Msa0619170:intron 55.0%
GCAACCTGCACCCTCCAATG+AGG - chr4_2:70240249-70240268 Msa0619170:three_prime_UTR 60.0%
GCTTCTTCCTCTGCTGCACC+TGG - chr4_2:70240438-70240457 Msa0619170:CDS 60.0%
! ATTCTGGCTGGCCAGCTTCC+CGG - chr4_2:70241554-70241573 Msa0619170:intron 60.0%
GGATACATACCCCGGGAAGC+TGG + chr4_2:70241568-70241587 None:intergenic 60.0%
TGACTGGCAGGCCATTTGGC+TGG - chr4_2:70241903-70241922 Msa0619170:intron 60.0%
GTCGACACCAGGTGCAGCAG+AGG + chr4_2:70240448-70240467 None:intergenic 65.0%
! TTCTGGCTGGCCAGCTTCCC+GGG - chr4_2:70241555-70241574 Msa0619170:intron 65.0%
! TCTGGCTGGCCAGCTTCCCG+GGG - chr4_2:70241556-70241575 Msa0619170:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 70240211 70242843 70240211 ID=Msa0619170;Name=Msa0619170
chr4_2 mRNA 70240211 70242843 70240211 ID=Msa0619170-mRNA-1;Parent=Msa0619170;Name=Msa0619170-mRNA-1;_AED=0.10;_eAED=0.10;_QI=107|0.75|1|1|1|1|5|70|210
chr4_2 exon 70240211 70240491 70240211 ID=Msa0619170-mRNA-1:exon:20437;Parent=Msa0619170-mRNA-1
chr4_2 exon 70240577 70240653 70240577 ID=Msa0619170-mRNA-1:exon:20436;Parent=Msa0619170-mRNA-1
chr4_2 exon 70241477 70241545 70241477 ID=Msa0619170-mRNA-1:exon:20435;Parent=Msa0619170-mRNA-1
chr4_2 exon 70242218 70242313 70242218 ID=Msa0619170-mRNA-1:exon:20434;Parent=Msa0619170-mRNA-1
chr4_2 exon 70242557 70242843 70242557 ID=Msa0619170-mRNA-1:exon:20433;Parent=Msa0619170-mRNA-1
chr4_2 five_prime_UTR 70242737 70242843 70242737 ID=Msa0619170-mRNA-1:five_prime_utr;Parent=Msa0619170-mRNA-1
chr4_2 CDS 70242557 70242736 70242557 ID=Msa0619170-mRNA-1:cds;Parent=Msa0619170-mRNA-1
chr4_2 CDS 70242218 70242313 70242218 ID=Msa0619170-mRNA-1:cds;Parent=Msa0619170-mRNA-1
chr4_2 CDS 70241477 70241545 70241477 ID=Msa0619170-mRNA-1:cds;Parent=Msa0619170-mRNA-1
chr4_2 CDS 70240577 70240653 70240577 ID=Msa0619170-mRNA-1:cds;Parent=Msa0619170-mRNA-1
chr4_2 CDS 70240281 70240491 70240281 ID=Msa0619170-mRNA-1:cds;Parent=Msa0619170-mRNA-1
chr4_2 three_prime_UTR 70240211 70240280 70240211 ID=Msa0619170-mRNA-1:three_prime_utr;Parent=Msa0619170-mRNA-1
Gene Sequence

>Msa0619170

ATGTTGATCACAACCATGCCTTACTCATCATCTTTACCCAAACCATATTATAATTTTTACCATAATCATCATCACCACCAAACATGCTTCAACATCAACCTCCCTAAATTCACAACCAGAGCTTCTTCCTCTGCTGCACCTGGTGTCGACCTCAACACTCTTGATTCTGCCATTGCCAAGAAAGACAGCAATGCAGTTAAAGAGGCACTTGATCAACTGAGTGAAATTGGTTGGGCCAAGAAATGGAGTTCTCAGCCATATGTTTCACGTCGTACGGCAGCTTTTCTCTTTACTGTGGTTGGAACAACTGGATTCTTGGGTATTCTGGCTGGCCAGCTTCCCGGGGATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCCTTAGTGGTATTGGGTATAGGCAGCACATCTCCTGGGCTTCTCCAAGCAGCTATTAGCAGCTTTTCAGTTGTTTTTCCTGATTATCAAGAAAGGATTGCTAGACATGAAGCAGCCCACTTTTTGAGTACTGCCCTATTGCTTTTATGGCTGATATTCATTCACAAAGTATCAGATATATCATATATGTCTTATCAATTTCATCATGACTCTAACTCAGCTTCTTCTTTTTGTTCATTCTATTTCTAG

Protein sequence

>Msa0619170

MLITTMPYSSSLPKPYYNFYHNHHHHQTCFNINLPKFTTRASSSAAPGVDLNTLDSAIAKKDSNAVKEALDQLSEIGWAKKWSSQPYVSRRTAAFLFTVVGTTGFLGILAGQLPGDWGFFVPYLIGSISLVVLGIGSTSPGLLQAAISSFSVVFPDYQERIARHEAAHFLSTALLLLWLIFIHKVSDISYMSYQFHHDSNSASSFCSFYF*