AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0227960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0227960 MtrunA17_Chr1g0188291 98.160 326 6 0 1 326 1 326 0.0 656
Msa0227960 MtrunA17_Chr2g0329451 66.772 316 105 0 8 323 14 329 3.82e-159 447
Msa0227960 MtrunA17_Chr4g0033631 66.246 317 107 0 8 324 15 331 5.03e-156 440
Msa0227960 MtrunA17_Chr6g0474331 64.873 316 109 2 8 321 28 343 2.95e-154 436
Msa0227960 MtrunA17_Chr1g0204101 63.175 315 114 2 8 320 23 337 4.09e-148 420
Msa0227960 MtrunA17_Chr5g0434971 66.026 312 105 1 5 315 64 375 2.72e-145 415
Msa0227960 MtrunA17_Chr1g0183241 50.625 320 135 4 8 325 110 408 1.81e-105 314
Msa0227960 MtrunA17_Chr1g0171921 48.348 333 145 6 8 326 183 502 3.38e-97 297
Msa0227960 MtrunA17_Chr1g0177771 49.363 314 139 5 8 317 253 550 3.28e-96 295
Msa0227960 MtrunA17_Chr1g0183661 50.545 275 122 4 34 306 14 276 2.30e-92 277
Msa0227960 MtrunA17_Chr1g0177321 46.519 316 140 5 8 319 179 469 6.92e-89 274
Msa0227960 MtrunA17_Chr7g0246421 59.116 181 72 2 135 313 5 185 4.59e-72 221
Msa0227960 MtrunA17_Chr1g0176221 45.339 236 100 2 85 320 1 207 1.59e-66 207
Msa0227960 MtrunA17_Chr5g0419371 31.897 348 198 5 7 318 209 553 4.85e-53 183
Msa0227960 MtrunA17_Chr4g0008441 34.906 318 174 4 34 318 133 450 1.11e-51 177
Msa0227960 MtrunA17_Chr7g0246411 57.143 133 55 1 5 135 38 170 4.80e-48 159
Msa0227960 MtrunA17_Chr4g0020911 53.030 132 60 1 134 263 58 189 1.86e-43 148
Msa0227960 MtrunA17_Chr1g0184491 24.646 353 224 9 3 324 70 411 2.09e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0227960 AT4G10260.1 78.233 317 69 0 7 323 5 321 0.0 523
Msa0227960 AT3G59480.1 66.875 320 106 0 2 321 4 323 1.56e-161 454
Msa0227960 AT1G06020.1 67.296 318 104 0 8 325 10 327 1.11e-159 450
Msa0227960 AT1G06030.1 67.188 320 105 0 2 321 5 324 6.63e-159 447
Msa0227960 AT2G31390.1 66.879 314 104 0 8 321 9 322 1.92e-158 446
Msa0227960 AT1G66430.1 63.950 319 114 1 2 319 59 377 1.97e-151 431
Msa0227960 AT5G51830.2 63.863 321 114 2 8 326 23 343 1.71e-150 426
Msa0227960 AT5G51830.1 63.863 321 114 2 8 326 23 343 1.71e-150 426
Msa0227960 AT3G54090.1 34.072 361 190 6 7 320 102 461 7.44e-56 188
Msa0227960 AT1G50390.1 52.071 169 52 1 153 321 1 140 1.94e-52 170
Msa0227960 AT1G69200.1 31.307 329 190 4 7 300 205 532 5.53e-47 167
Msa0227960 AT1G06730.1 24.917 301 205 6 40 327 132 424 3.42e-12 67.4
Msa0227960 AT1G17160.1 23.973 292 192 7 39 321 105 375 6.32e-11 63.2

Find 141 sgRNAs with CRISPR-Local

Find 520 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCAGTGGTACCTTAAATT+TGG 0.118031 2_1:-79279243 None:intergenic
TGTCTCACAAATATAGTTTA+AGG 0.131310 2_1:-79279605 None:intergenic
GTTAAAGTCTCTCTCAATTT+TGG 0.146753 2_1:-79281891 None:intergenic
GCAAGAGACCCTTCTATATT+TGG 0.155547 2_1:+79281728 Msa0227960:CDS
CTAAGCATTCAATCATAAAT+TGG 0.249083 2_1:-79279437 None:intergenic
ACCTTCTCTAGCAGCTTTCA+TGG 0.275867 2_1:-79280778 None:intergenic
TTGTATGAAAGTCTTATTAA+AGG 0.288285 2_1:-79282089 None:intergenic
CAAGAGACCCTTCTATATTT+GGG 0.290405 2_1:+79281729 Msa0227960:CDS
GGCAGCATTGCCACCAAGTT+TGG 0.291331 2_1:-79279842 None:intergenic
CTTTGATTAATTGAATAAAT+AGG 0.291700 2_1:+79279041 Msa0227960:five_prime_UTR
ATGTTTGAAATATAATTATA+AGG 0.304077 2_1:-79279410 None:intergenic
AACAAATTAAAGAATGTTCT+AGG 0.324061 2_1:-79278031 None:intergenic
CAAGTACAACTCATCCCTTT+TGG 0.324093 2_1:-79278936 None:intergenic
TCCAGTGGTACCTTAAATTT+GGG 0.327418 2_1:-79279242 None:intergenic
CAGTGTGAAACCCAAATTTA+AGG 0.348960 2_1:+79279232 Msa0227960:five_prime_UTR
TAATAACAAACACAAATATA+TGG 0.356452 2_1:+79279531 Msa0227960:five_prime_UTR
TTGCAACAGAATGAAGGATT+TGG 0.357767 2_1:-79278164 None:intergenic
TGAAATTTCTGCTGGTGATT+TGG 0.359064 2_1:+79278905 Msa0227960:five_prime_UTR
CACACTGGTCCCACTTATAT+AGG 0.362155 2_1:-79279216 None:intergenic
AAGCATACCCCAAATATAGA+AGG 0.366100 2_1:-79281737 None:intergenic
AATACAAAGATATTCCATTA+TGG 0.367235 2_1:+79280708 Msa0227960:CDS
CTTACAAAAGCATTCATTCT+CGG 0.367708 2_1:+79279293 Msa0227960:five_prime_UTR
AACAGAGACATGCTATCTTT+TGG 0.368243 2_1:+79278839 Msa0227960:five_prime_UTR
ACAGCACAAGCCACATTGGC+AGG 0.372362 2_1:-79279817 None:intergenic
GTCCTTCATCTTCATACATT+AGG 0.376446 2_1:-79279019 None:intergenic
CAAAAGGGATGAGTTGTACT+TGG 0.379437 2_1:+79278937 Msa0227960:five_prime_UTR
TCTGCTGAGGCTGCTAGGTC+TGG 0.380493 2_1:+79280849 Msa0227960:CDS
AAGAAGCTGTTATGTCTCTA+TGG 0.387207 2_1:+79281099 Msa0227960:CDS
CTTGGTAGCAGTCAAATGTT+TGG 0.389927 2_1:-79278236 None:intergenic
ACATTGGCAGGGGCACCGCC+AGG 0.390542 2_1:-79279805 None:intergenic
CAAATGTCAGGCTTCCTTTG+TGG 0.390789 2_1:+79280823 Msa0227960:CDS
TAAGACTAATGGATCCATAA+TGG 0.395043 2_1:-79280722 None:intergenic
ATTTCAAAGGAAAGTTTAGT+TGG 0.395477 2_1:-79282015 None:intergenic
CAGGTAGGGGATGATGAGTT+TGG 0.399164 2_1:+79280495 Msa0227960:intron
TGGTTCTGAAATAAGACTAA+TGG 0.406052 2_1:-79280733 None:intergenic
ACAACTCTTCTCCTTGTTGA+AGG 0.406999 2_1:-79278280 None:intergenic
TCGCCGAATGATATCACTAA+TGG 0.409144 2_1:-79279712 None:intergenic
GGTCTGGAATCAAAAGCATT+TGG 0.412730 2_1:+79280865 Msa0227960:CDS
ACCATGTAGATCTGCTCATA+TGG 0.422423 2_1:+79280752 Msa0227960:CDS
AAGCCTGACATTTGGATCAT+AGG 0.423973 2_1:-79280814 None:intergenic
TTTGTGACATTGAGGAAAGA+TGG 0.427613 2_1:+79280603 Msa0227960:CDS
GCTTGTGCTGTGTCCAAACT+TGG 0.436119 2_1:+79279829 Msa0227960:CDS
TGTAAATTGCAACAGAATGA+AGG 0.436838 2_1:-79278170 None:intergenic
AGCTCACTCAACTTGGTGTT+AGG 0.443465 2_1:+79278362 Msa0227960:five_prime_UTR
ATAACAGCTTCTTCATTCTC+AGG 0.444898 2_1:-79281089 None:intergenic
CACAAAGGAAGCCTGACATT+TGG 0.445582 2_1:-79280822 None:intergenic
AGTTTAGTTGGCTTTAGAGC+TGG 0.453062 2_1:-79282003 None:intergenic
AACACCAAGTTGAGTGAGCT+TGG 0.455326 2_1:-79278359 None:intergenic
GTGAAGGCAATTGACACAAC+TGG 0.456721 2_1:+79281665 Msa0227960:CDS
AGACACATCTGGTGTATCCT+TGG 0.457720 2_1:+79279756 Msa0227960:CDS
TTCTGAGCCTCTTCAGCAGT+TGG 0.458744 2_1:-79281972 None:intergenic
AGTTGAGTGAGCTTGGACTC+AGG 0.458878 2_1:-79278352 None:intergenic
GGCAAAGTTACACTTACCTT+GGG 0.470688 2_1:-79278259 None:intergenic
CACTCCTAGTGGGGCTAATG+AGG 0.472036 2_1:+79278878 Msa0227960:five_prime_UTR
TCCTTTGTGGCCTTCTGCTG+AGG 0.474259 2_1:+79280836 Msa0227960:CDS
AAGAAGAAGAACAAGATGTC+AGG 0.478396 2_1:+79279679 Msa0227960:exon
ACTGTTCTAAAAGAAATTAG+TGG 0.478563 2_1:+79279323 Msa0227960:five_prime_UTR
TATGTCCATGGAAAATTACT+TGG 0.480875 2_1:-79278810 None:intergenic
TATAATTATAAGGTATGTAA+TGG 0.481825 2_1:-79279400 None:intergenic
TTAACATTTGCAAATGCTTG+TGG 0.485254 2_1:+79281909 Msa0227960:CDS
ATTGAGGAAAGATGGAGAGA+GGG 0.488808 2_1:+79280611 Msa0227960:CDS
CTCAACTTGGTGTTAGGCAG+TGG 0.492268 2_1:+79278368 Msa0227960:five_prime_UTR
ATTGGCAGGGGCACCGCCAG+GGG 0.492610 2_1:-79279803 None:intergenic
GGCCTTCTGCTGAGGCTGCT+AGG 0.493211 2_1:+79280844 Msa0227960:CDS
ACAAATTAAAGAATGTTCTA+GGG 0.494197 2_1:-79278030 None:intergenic
TGCACTTCCAACTGCTGAAG+AGG 0.495831 2_1:+79281965 Msa0227960:CDS
AAATAGGTTTCCTATATAAG+TGG 0.497597 2_1:+79279206 Msa0227960:five_prime_UTR
CATTGGCAGGGGCACCGCCA+GGG 0.499364 2_1:-79279804 None:intergenic
GATCCATTAGTGATATCATT+CGG 0.499392 2_1:+79279709 Msa0227960:CDS
AGGCAAAGTTACACTTACCT+TGG 0.501016 2_1:-79278260 None:intergenic
TCTTCAGCAGTTGGAAGTGC+AGG 0.503583 2_1:-79281963 None:intergenic
ATTAAGAACCTTGCCGATGA+AGG 0.504091 2_1:-79279863 None:intergenic
CTTAAATTTGGGTTTCACAC+TGG 0.505733 2_1:-79279231 None:intergenic
ACCCAAATTTAAGGTACCAC+TGG 0.505898 2_1:+79279241 Msa0227960:five_prime_UTR
GACCTAGCAGCCTCAGCAGA+AGG 0.506010 2_1:-79280846 None:intergenic
AAGGATACACCAGATGTGTC+TGG 0.508328 2_1:-79279754 None:intergenic
AAGCTGCTTATTATCACTGA+TGG 0.515902 2_1:+79281134 Msa0227960:CDS
TGTGCTGTGTCCAAACTTGG+TGG 0.518945 2_1:+79279832 Msa0227960:CDS
CACAGAGGCAAGAACTGCAT+TGG 0.524471 2_1:+79280578 Msa0227960:CDS
ATTTGTCCAAGACTCTAGAA+AGG 0.524831 2_1:+79278065 Msa0227960:five_prime_UTR
TGTACTTGGGATGTGTCTGT+TGG 0.525073 2_1:+79278951 Msa0227960:five_prime_UTR
GAGTCCAAGCTCACTCAACT+TGG 0.526860 2_1:+79278355 Msa0227960:five_prime_UTR
AGCAGTTGGAAGTGCAGGAA+TGG 0.528605 2_1:-79281958 None:intergenic
TGTCCTATGATCCAAATGTC+AGG 0.532074 2_1:+79280811 Msa0227960:CDS
AATCAAAAGCATTTGGAATG+AGG 0.534914 2_1:+79280872 Msa0227960:CDS
CATTGAGGAAAGATGGAGAG+AGG 0.536347 2_1:+79280610 Msa0227960:CDS
CATTCTGTTGCAATTTACAA+TGG 0.540971 2_1:+79278174 Msa0227960:five_prime_UTR
TATTATCACTGATGGAGAGA+AGG 0.541140 2_1:+79281142 Msa0227960:CDS
GGTGGCAATGCTGCCTTCAT+CGG 0.543040 2_1:+79279850 Msa0227960:CDS
AGTTACACTTACCTTGGGCT+TGG 0.544555 2_1:-79278254 None:intergenic
TTGGGATGTGTCTGTTGGTG+TGG 0.547160 2_1:+79278956 Msa0227960:five_prime_UTR
AGTCAAATGTTTGGTTTGTG+AGG 0.547845 2_1:-79278227 None:intergenic
TTCAGTAACATATCAGCACT+AGG 0.548072 2_1:-79280654 None:intergenic
GCAATTGACACAACTGGTGC+TGG 0.548770 2_1:+79281671 Msa0227960:CDS
AATGAATATAGCTAGTCCTC+TGG 0.549042 2_1:-79282049 None:intergenic
TATGCTTTCATCAAAGCCCC+TGG 0.549304 2_1:+79279787 Msa0227960:CDS
GTCCATGGAAAATTACTTGG+AGG 0.553197 2_1:-79278807 None:intergenic
ATTATCACTGATGGAGAGAA+GGG 0.554637 2_1:+79281143 Msa0227960:CDS
GAATGAGGCTGATTTCATCA+AGG 0.558047 2_1:+79280887 Msa0227960:CDS
GGATTATCATCAAATTTCAA+AGG 0.559045 2_1:-79282028 None:intergenic
GCAGCTGTCACAGAGAAACT+TGG 0.559175 2_1:+79278307 Msa0227960:five_prime_UTR
TAGGGGATGATGAGTTTGGA+AGG 0.562525 2_1:+79280499 Msa0227960:CDS
AAGTGAAGGTCACTCCTAGT+GGG 0.564562 2_1:+79278868 Msa0227960:five_prime_UTR
CAGCACAAGCCACATTGGCA+GGG 0.565146 2_1:-79279816 None:intergenic
AGCACAAGCCACATTGGCAG+GGG 0.566309 2_1:-79279815 None:intergenic
TCCATGGAAAATTACTTGGA+GGG 0.566600 2_1:-79278806 None:intergenic
TGCCTAATGTATGAAGATGA+AGG 0.572511 2_1:+79279017 Msa0227960:five_prime_UTR
GCCTCAGCAGAAGGCCACAA+AGG 0.575264 2_1:-79280837 None:intergenic
AATAGGTTTCCTATATAAGT+GGG 0.575361 2_1:+79279207 Msa0227960:five_prime_UTR
GCCATATGAGCAGATCTACA+TGG 0.575838 2_1:-79280753 None:intergenic
AAAGTGAAGGTCACTCCTAG+TGG 0.587646 2_1:+79278867 Msa0227960:five_prime_UTR
TCAGTAACATATCAGCACTA+GGG 0.589086 2_1:-79280653 None:intergenic
GAGGCAGTTGAAATTTCTGC+TGG 0.589901 2_1:+79278897 Msa0227960:five_prime_UTR
AGCATACCCCAAATATAGAA+GGG 0.593760 2_1:-79281736 None:intergenic
GGACACAGCACAAGCCACAT+TGG 0.596726 2_1:-79279821 None:intergenic
GCCATGAAAGCTGCTAGAGA+AGG 0.601701 2_1:+79280777 Msa0227960:CDS
CAATGCTGCCTTCATCGGCA+AGG 0.604108 2_1:+79279855 Msa0227960:CDS
TGGCGGTGCCCCTGCCAATG+TGG 0.604697 2_1:+79279807 Msa0227960:CDS
TGAGTGAGCTTGGACTCAGG+AGG 0.606187 2_1:-79278349 None:intergenic
AAAAGGGATGAGTTGTACTT+GGG 0.609307 2_1:+79278938 Msa0227960:five_prime_UTR
ATGGCATCATCATCATGTGT+AGG 0.613363 2_1:+79278193 Msa0227960:five_prime_UTR
CAAATTAAAGAATGTTCTAG+GGG 0.614416 2_1:-79278029 None:intergenic
AGCAATGTGTACAACACAGA+AGG 0.614417 2_1:+79281932 Msa0227960:CDS
GGGTTGTAGATATGTCACTA+AGG 0.615724 2_1:+79281163 Msa0227960:CDS
GTGTAACTTTGCCTTCAACA+AGG 0.618419 2_1:+79278269 Msa0227960:five_prime_UTR
AAGAGACCCTTCTATATTTG+GGG 0.620591 2_1:+79281730 Msa0227960:CDS
GGTAAGTGGGTTCTCAGTGA+AGG 0.620599 2_1:+79281649 Msa0227960:CDS
GAAATTTGATGATAATCCAG+AGG 0.620620 2_1:+79282033 Msa0227960:three_prime_UTR
TCTGTTGCATCATATGTCCA+TGG 0.622988 2_1:-79278822 None:intergenic
AAAACAATAATAACTGACAA+AGG 0.628440 2_1:+79279650 Msa0227960:five_prime_UTR
GAGTGAGCTTGGACTCAGGA+GGG 0.632998 2_1:-79278348 None:intergenic
GAAAGAATCTGAATTGAACA+TGG 0.634038 2_1:+79280674 Msa0227960:CDS
GCAATGTGTACAACACAGAA+GGG 0.647308 2_1:+79281933 Msa0227960:CDS
ACTGCCTCATTAGCCCCACT+AGG 0.662701 2_1:-79278882 None:intergenic
TGGTGCACTTCTCAGAGATG+TGG 0.663280 2_1:+79281706 Msa0227960:CDS
ATGAAAGCTGCTAGAGAAGG+TGG 0.665141 2_1:+79280780 Msa0227960:CDS
TTTGACTGCTACCAAGCCCA+AGG 0.672230 2_1:+79278243 Msa0227960:five_prime_UTR
GAAAGCATAAGATTCAGCCA+AGG 0.678603 2_1:-79279773 None:intergenic
GCTTTCATCAAAGCCCCTGG+CGG 0.681461 2_1:+79279790 Msa0227960:CDS
AGTGAAGGTCACTCCTAGTG+GGG 0.682734 2_1:+79278869 Msa0227960:five_prime_UTR
AAATTAAAGAATGTTCTAGG+GGG 0.743638 2_1:-79278028 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTTATTTTAATGAAAA+AGG + chr2_1:79278500-79278519 Msa0227960:intron 10.0%
!!! ACTTAAAAGTTATTTTTAAA+GGG - chr2_1:79279148-79279167 None:intergenic 10.0%
!!! AACTTAAAAGTTATTTTTAA+AGG - chr2_1:79279149-79279168 None:intergenic 10.0%
!!! ATGTTTGAAATATAATTATA+AGG - chr2_1:79279413-79279432 None:intergenic 10.0%
!!! GATTTTTATTTTAATGAAAA+AGG + chr2_1:79278500-79278519 Msa0227960:intron 10.0%
!!! ACTTAAAAGTTATTTTTAAA+GGG - chr2_1:79279148-79279167 None:intergenic 10.0%
!!! AACTTAAAAGTTATTTTTAA+AGG - chr2_1:79279149-79279168 None:intergenic 10.0%
!!! ATGTTTGAAATATAATTATA+AGG - chr2_1:79279413-79279432 None:intergenic 10.0%
!! CTTTGATTAATTGAATAAAT+AGG + chr2_1:79279041-79279060 Msa0227960:five_prime_UTR 15.0%
!!! TATTTTAAGACCATAAAAAT+AGG + chr2_1:79279190-79279209 Msa0227960:five_prime_UTR 15.0%
!! TATAATTATAAGGTATGTAA+TGG - chr2_1:79279403-79279422 None:intergenic 15.0%
!! TAATAACAAACACAAATATA+TGG + chr2_1:79279531-79279550 Msa0227960:five_prime_UTR 15.0%
!! ATAAAAATCAACAATGTAAT+AGG - chr2_1:79279585-79279604 None:intergenic 15.0%
!! ATATATACTTAAAATGAATG+CGG + chr2_1:79279936-79279955 Msa0227960:intron 15.0%
!!! TATAGAATATTGATAATATG+AGG + chr2_1:79280393-79280412 Msa0227960:intron 15.0%
!!! ATAGAATATTGATAATATGA+GGG + chr2_1:79280394-79280413 Msa0227960:intron 15.0%
!!! TTGAATTTGAAATTTCTTTA+TGG + chr2_1:79280922-79280941 Msa0227960:intron 15.0%
!! TAAAAATAATCTTCTTGAAT+GGG - chr2_1:79281321-79281340 None:intergenic 15.0%
!! ATAAAAATAATCTTCTTGAA+TGG - chr2_1:79281322-79281341 None:intergenic 15.0%
!!! ATTTTTATCTATTCACAAAT+AGG + chr2_1:79281334-79281353 Msa0227960:intron 15.0%
!!! TTTTTATCTATTCACAAATA+GGG + chr2_1:79281335-79281354 Msa0227960:intron 15.0%
!!! AATGAGAATTATTTTTACAA+AGG - chr2_1:79281825-79281844 None:intergenic 15.0%
!! TTTGTAAAAATAATTCTCAT+TGG + chr2_1:79281824-79281843 Msa0227960:intron 15.0%
!! CTTTGATTAATTGAATAAAT+AGG + chr2_1:79279041-79279060 Msa0227960:five_prime_UTR 15.0%
!!! TATTTTAAGACCATAAAAAT+AGG + chr2_1:79279190-79279209 Msa0227960:five_prime_UTR 15.0%
!! TATAATTATAAGGTATGTAA+TGG - chr2_1:79279403-79279422 None:intergenic 15.0%
!! TAATAACAAACACAAATATA+TGG + chr2_1:79279531-79279550 Msa0227960:five_prime_UTR 15.0%
!! ATAAAAATCAACAATGTAAT+AGG - chr2_1:79279585-79279604 None:intergenic 15.0%
!! ATATATACTTAAAATGAATG+CGG + chr2_1:79279936-79279955 Msa0227960:intron 15.0%
!!! TATAGAATATTGATAATATG+AGG + chr2_1:79280393-79280412 Msa0227960:intron 15.0%
!!! ATAGAATATTGATAATATGA+GGG + chr2_1:79280394-79280413 Msa0227960:intron 15.0%
!!! TTGAATTTGAAATTTCTTTA+TGG + chr2_1:79280922-79280941 Msa0227960:intron 15.0%
!! TAAAAATAATCTTCTTGAAT+GGG - chr2_1:79281321-79281340 None:intergenic 15.0%
!! ATAAAAATAATCTTCTTGAA+TGG - chr2_1:79281322-79281341 None:intergenic 15.0%
!!! ATTTTTATCTATTCACAAAT+AGG + chr2_1:79281334-79281353 Msa0227960:intron 15.0%
!!! TTTTTATCTATTCACAAATA+GGG + chr2_1:79281335-79281354 Msa0227960:intron 15.0%
!!! AATGAGAATTATTTTTACAA+AGG - chr2_1:79281825-79281844 None:intergenic 15.0%
!! TTTGTAAAAATAATTCTCAT+TGG + chr2_1:79281824-79281843 Msa0227960:intron 15.0%
!! ACAAATTAAAGAATGTTCTA+GGG - chr2_1:79278033-79278052 None:intergenic 20.0%
!! AACAAATTAAAGAATGTTCT+AGG - chr2_1:79278034-79278053 None:intergenic 20.0%
!!! GTTAAGTTTATCTTTGTTTT+TGG - chr2_1:79278114-79278133 None:intergenic 20.0%
!!! TTTTCTTACATTTTTTCTCA+TGG + chr2_1:79278465-79278484 Msa0227960:intron 20.0%
!! TACAGTTAAAGTCATATATA+TGG - chr2_1:79278624-79278643 None:intergenic 20.0%
!!! AAACGTTTTTTATGATTTGA+CGG + chr2_1:79278659-79278678 Msa0227960:intron 20.0%
!! ACAACATAAAAAATCTTTCA+CGG + chr2_1:79278696-79278715 Msa0227960:intron 20.0%
!!! ATATAGGAAACCTATTTTTA+TGG - chr2_1:79279203-79279222 None:intergenic 20.0%
!! AAAACAATAATAACTGACAA+AGG + chr2_1:79279650-79279669 Msa0227960:five_prime_UTR 20.0%
!! GATAAACATGATAGTAAAAT+GGG - chr2_1:79279900-79279919 None:intergenic 20.0%
!!! GCATTCATTTTAAGTATATA+TGG - chr2_1:79279937-79279956 None:intergenic 20.0%
!! ATAAATTTCAATGACCATAT+TGG - chr2_1:79280134-79280153 None:intergenic 20.0%
!! ATATGGTCATTGAAATTTAT+AGG + chr2_1:79280134-79280153 Msa0227960:intron 20.0%
!! AATACAAAGATATTCCATTA+TGG + chr2_1:79280708-79280727 Msa0227960:CDS 20.0%
!! TTTAAAAGAATCTGTAAAAG+TGG + chr2_1:79280995-79281014 Msa0227960:intron 20.0%
!!! TGAAATTTTTGTTTGCTTTA+TGG + chr2_1:79281848-79281867 Msa0227960:intron 20.0%
!! ACAAATTAAAGAATGTTCTA+GGG - chr2_1:79278033-79278052 None:intergenic 20.0%
!! AACAAATTAAAGAATGTTCT+AGG - chr2_1:79278034-79278053 None:intergenic 20.0%
!!! GTTAAGTTTATCTTTGTTTT+TGG - chr2_1:79278114-79278133 None:intergenic 20.0%
!!! TTTTCTTACATTTTTTCTCA+TGG + chr2_1:79278465-79278484 Msa0227960:intron 20.0%
!! TACAGTTAAAGTCATATATA+TGG - chr2_1:79278624-79278643 None:intergenic 20.0%
!!! AAACGTTTTTTATGATTTGA+CGG + chr2_1:79278659-79278678 Msa0227960:intron 20.0%
!! ACAACATAAAAAATCTTTCA+CGG + chr2_1:79278696-79278715 Msa0227960:intron 20.0%
!!! ATATAGGAAACCTATTTTTA+TGG - chr2_1:79279203-79279222 None:intergenic 20.0%
!! AAAACAATAATAACTGACAA+AGG + chr2_1:79279650-79279669 Msa0227960:five_prime_UTR 20.0%
!! GATAAACATGATAGTAAAAT+GGG - chr2_1:79279900-79279919 None:intergenic 20.0%
!!! GCATTCATTTTAAGTATATA+TGG - chr2_1:79279937-79279956 None:intergenic 20.0%
!! ATAAATTTCAATGACCATAT+TGG - chr2_1:79280134-79280153 None:intergenic 20.0%
!! ATATGGTCATTGAAATTTAT+AGG + chr2_1:79280134-79280153 Msa0227960:intron 20.0%
!! AATACAAAGATATTCCATTA+TGG + chr2_1:79280708-79280727 Msa0227960:CDS 20.0%
!! TTTAAAAGAATCTGTAAAAG+TGG + chr2_1:79280995-79281014 Msa0227960:intron 20.0%
!!! TGAAATTTTTGTTTGCTTTA+TGG + chr2_1:79281848-79281867 Msa0227960:intron 20.0%
!! AAATTAAAGAATGTTCTAGG+GGG - chr2_1:79278031-79278050 None:intergenic 25.0%
! CAAATTAAAGAATGTTCTAG+GGG - chr2_1:79278032-79278051 None:intergenic 25.0%
! AAGAAATGTGGTATTTACTT+GGG - chr2_1:79278394-79278413 None:intergenic 25.0%
! AAGAAGATAATGAAGAAATG+TGG - chr2_1:79278406-79278425 None:intergenic 25.0%
! TTAGAATAATAGACATGATG+AGG - chr2_1:79278437-79278456 None:intergenic 25.0%
! TTAACGAGATTAATACACTA+TGG + chr2_1:79278578-79278597 Msa0227960:intron 25.0%
! ATATGACTTTAACTGTAGTT+AGG + chr2_1:79278627-79278646 Msa0227960:intron 25.0%
! TTGGTGTAAATAAAAACAGA+TGG + chr2_1:79278778-79278797 Msa0227960:intron 25.0%
! TGGTGTAAATAAAAACAGAT+GGG + chr2_1:79278779-79278798 Msa0227960:intron 25.0%
! AAATAGGTTTCCTATATAAG+TGG + chr2_1:79279206-79279225 Msa0227960:five_prime_UTR 25.0%
! AATAGGTTTCCTATATAAGT+GGG + chr2_1:79279207-79279226 Msa0227960:five_prime_UTR 25.0%
!!! ACTGTTCTAAAAGAAATTAG+TGG + chr2_1:79279323-79279342 Msa0227960:five_prime_UTR 25.0%
! CTAAGCATTCAATCATAAAT+TGG - chr2_1:79279440-79279459 None:intergenic 25.0%
! TGTCTCACAAATATAGTTTA+AGG - chr2_1:79279608-79279627 None:intergenic 25.0%
! CGATAAACATGATAGTAAAA+TGG - chr2_1:79279901-79279920 None:intergenic 25.0%
! TTCTGAGTAAATATCCAATA+TGG + chr2_1:79280117-79280136 Msa0227960:intron 25.0%
!!! CGTATGTCATTTTTTTTGTT+AGG - chr2_1:79280474-79280493 None:intergenic 25.0%
! TATGGAAGTCTATTAAATGA+TGG + chr2_1:79280940-79280959 Msa0227960:intron 25.0%
! AAACTTACCATTCTCTATAT+AGG + chr2_1:79281028-79281047 Msa0227960:intron 25.0%
!!! TTTTCAAAATATGGATTGGA+TGG - chr2_1:79281195-79281214 None:intergenic 25.0%
!! AAAGAGCTCTTTTCAAAATA+TGG - chr2_1:79281204-79281223 None:intergenic 25.0%
!! TTTTGTTAACTGATCATTAG+TGG + chr2_1:79281255-79281274 Msa0227960:intron 25.0%
! AGATAAAATTAAGTCAAGCT+GGG - chr2_1:79281512-79281531 None:intergenic 25.0%
! AAGATAAAATTAAGTCAAGC+TGG - chr2_1:79281513-79281532 None:intergenic 25.0%
! TCAAACAATATTTCCAAAGA+TGG - chr2_1:79281609-79281628 None:intergenic 25.0%
!! GTTTGAATGCAGAATTTTAA+AGG + chr2_1:79281623-79281642 Msa0227960:intron 25.0%
!!! AATGCAGAATTTTAAAGGAA+GGG + chr2_1:79281628-79281647 Msa0227960:intron 25.0%
! ATTTCAAAGGAAAGTTTAGT+TGG - chr2_1:79282018-79282037 None:intergenic 25.0%
! GGATTATCATCAAATTTCAA+AGG - chr2_1:79282031-79282050 None:intergenic 25.0%
!! AAATTAAAGAATGTTCTAGG+GGG - chr2_1:79278031-79278050 None:intergenic 25.0%
! CAAATTAAAGAATGTTCTAG+GGG - chr2_1:79278032-79278051 None:intergenic 25.0%
! AAGAAATGTGGTATTTACTT+GGG - chr2_1:79278394-79278413 None:intergenic 25.0%
! AAGAAGATAATGAAGAAATG+TGG - chr2_1:79278406-79278425 None:intergenic 25.0%
! TTAGAATAATAGACATGATG+AGG - chr2_1:79278437-79278456 None:intergenic 25.0%
! TTAACGAGATTAATACACTA+TGG + chr2_1:79278578-79278597 Msa0227960:intron 25.0%
! ATATGACTTTAACTGTAGTT+AGG + chr2_1:79278627-79278646 Msa0227960:intron 25.0%
! TTGGTGTAAATAAAAACAGA+TGG + chr2_1:79278778-79278797 Msa0227960:intron 25.0%
! TGGTGTAAATAAAAACAGAT+GGG + chr2_1:79278779-79278798 Msa0227960:intron 25.0%
! AAATAGGTTTCCTATATAAG+TGG + chr2_1:79279206-79279225 Msa0227960:five_prime_UTR 25.0%
! AATAGGTTTCCTATATAAGT+GGG + chr2_1:79279207-79279226 Msa0227960:five_prime_UTR 25.0%
!!! ACTGTTCTAAAAGAAATTAG+TGG + chr2_1:79279323-79279342 Msa0227960:five_prime_UTR 25.0%
! CTAAGCATTCAATCATAAAT+TGG - chr2_1:79279440-79279459 None:intergenic 25.0%
! TGTCTCACAAATATAGTTTA+AGG - chr2_1:79279608-79279627 None:intergenic 25.0%
! CGATAAACATGATAGTAAAA+TGG - chr2_1:79279901-79279920 None:intergenic 25.0%
! TTCTGAGTAAATATCCAATA+TGG + chr2_1:79280117-79280136 Msa0227960:intron 25.0%
!!! CGTATGTCATTTTTTTTGTT+AGG - chr2_1:79280474-79280493 None:intergenic 25.0%
! TATGGAAGTCTATTAAATGA+TGG + chr2_1:79280940-79280959 Msa0227960:intron 25.0%
! AAACTTACCATTCTCTATAT+AGG + chr2_1:79281028-79281047 Msa0227960:intron 25.0%
!!! TTTTCAAAATATGGATTGGA+TGG - chr2_1:79281195-79281214 None:intergenic 25.0%
!! AAAGAGCTCTTTTCAAAATA+TGG - chr2_1:79281204-79281223 None:intergenic 25.0%
!! TTTTGTTAACTGATCATTAG+TGG + chr2_1:79281255-79281274 Msa0227960:intron 25.0%
! AGATAAAATTAAGTCAAGCT+GGG - chr2_1:79281512-79281531 None:intergenic 25.0%
! AAGATAAAATTAAGTCAAGC+TGG - chr2_1:79281513-79281532 None:intergenic 25.0%
! TCAAACAATATTTCCAAAGA+TGG - chr2_1:79281609-79281628 None:intergenic 25.0%
!! GTTTGAATGCAGAATTTTAA+AGG + chr2_1:79281623-79281642 Msa0227960:intron 25.0%
!!! AATGCAGAATTTTAAAGGAA+GGG + chr2_1:79281628-79281647 Msa0227960:intron 25.0%
! ATTTCAAAGGAAAGTTTAGT+TGG - chr2_1:79282018-79282037 None:intergenic 25.0%
! GGATTATCATCAAATTTCAA+AGG - chr2_1:79282031-79282050 None:intergenic 25.0%
TGTAAATTGCAACAGAATGA+AGG - chr2_1:79278173-79278192 None:intergenic 30.0%
CATTCTGTTGCAATTTACAA+TGG + chr2_1:79278174-79278193 Msa0227960:five_prime_UTR 30.0%
GAAGAAATGTGGTATTTACT+TGG - chr2_1:79278395-79278414 None:intergenic 30.0%
!!! TCTTACATTTTTTCTCATGG+TGG + chr2_1:79278468-79278487 Msa0227960:intron 30.0%
GGTGTAAATAAAAACAGATG+GGG + chr2_1:79278780-79278799 Msa0227960:intron 30.0%
TATGTCCATGGAAAATTACT+TGG - chr2_1:79278813-79278832 None:intergenic 30.0%
!! ATTTGGTTGTTTTCCCAAAA+GGG + chr2_1:79278922-79278941 Msa0227960:five_prime_UTR 30.0%
! GAGAATGAATGCTTTTGTAA+GGG - chr2_1:79279294-79279313 None:intergenic 30.0%
!! CTTACAAAAGCATTCATTCT+CGG + chr2_1:79279293-79279312 Msa0227960:five_prime_UTR 30.0%
GATCCATTAGTGATATCATT+CGG + chr2_1:79279709-79279728 Msa0227960:CDS 30.0%
ATACTTAAAATGAATGCGGA+TGG + chr2_1:79279940-79279959 Msa0227960:intron 30.0%
TACTTAAAATGAATGCGGAT+GGG + chr2_1:79279941-79279960 Msa0227960:intron 30.0%
ATTTACGTATAGTCTACCAA+CGG - chr2_1:79280034-79280053 None:intergenic 30.0%
GTTTGATGTGGTATTATATG+AGG + chr2_1:79280070-79280089 Msa0227960:intron 30.0%
TTATCTTAGCAAATGCATCT+CGG + chr2_1:79280277-79280296 Msa0227960:intron 30.0%
GAGTAGATATCCTGTTTAAT+CGG - chr2_1:79280443-79280462 None:intergenic 30.0%
CAAAAAAAATGACATACGAC+AGG + chr2_1:79280476-79280495 Msa0227960:intron 30.0%
AAAAATGGAGTGAATACAGA+TGG + chr2_1:79280543-79280562 Msa0227960:CDS 30.0%
GAAAGAATCTGAATTGAACA+TGG + chr2_1:79280674-79280693 Msa0227960:CDS 30.0%
! TAAGACTAATGGATCCATAA+TGG - chr2_1:79280725-79280744 None:intergenic 30.0%
!! TGGTTCTGAAATAAGACTAA+TGG - chr2_1:79280736-79280755 None:intergenic 30.0%
!! AATCAAAAGCATTTGGAATG+AGG + chr2_1:79280872-79280891 Msa0227960:CDS 30.0%
GAGGATATAACAGAAAACTA+GGG + chr2_1:79280962-79280981 Msa0227960:intron 30.0%
TCACTTACCTATATAGAGAA+TGG - chr2_1:79281038-79281057 None:intergenic 30.0%
! GCTCTTTTCAAAATATGGAT+TGG - chr2_1:79281199-79281218 None:intergenic 30.0%
GAAAATAGGATAGCAACTTA+TGG - chr2_1:79281452-79281471 None:intergenic 30.0%
TATGGAGAGCTTATGAAAAT+AGG - chr2_1:79281466-79281485 None:intergenic 30.0%
! ACTGTTTTCATAAGCTACTA+TGG - chr2_1:79281484-79281503 None:intergenic 30.0%
CTAAACTATTCATCCATCTT+TGG + chr2_1:79281593-79281612 Msa0227960:intron 30.0%
!! GAATGCAGAATTTTAAAGGA+AGG + chr2_1:79281627-79281646 Msa0227960:intron 30.0%
!! AATTTTAAAGGAAGGGTAAG+TGG + chr2_1:79281635-79281654 Msa0227960:CDS 30.0%
!! ATTTTAAAGGAAGGGTAAGT+GGG + chr2_1:79281636-79281655 Msa0227960:CDS 30.0%
CTTTATGGAATTCAACATGA+AGG + chr2_1:79281863-79281882 Msa0227960:intron 30.0%
! GTTAAAGTCTCTCTCAATTT+TGG - chr2_1:79281894-79281913 None:intergenic 30.0%
TTAACATTTGCAAATGCTTG+TGG + chr2_1:79281909-79281928 Msa0227960:CDS 30.0%
! GAAATTTGATGATAATCCAG+AGG + chr2_1:79282033-79282052 Msa0227960:three_prime_UTR 30.0%
TGTAAATTGCAACAGAATGA+AGG - chr2_1:79278173-79278192 None:intergenic 30.0%
CATTCTGTTGCAATTTACAA+TGG + chr2_1:79278174-79278193 Msa0227960:five_prime_UTR 30.0%
GAAGAAATGTGGTATTTACT+TGG - chr2_1:79278395-79278414 None:intergenic 30.0%
!!! TCTTACATTTTTTCTCATGG+TGG + chr2_1:79278468-79278487 Msa0227960:intron 30.0%
GGTGTAAATAAAAACAGATG+GGG + chr2_1:79278780-79278799 Msa0227960:intron 30.0%
TATGTCCATGGAAAATTACT+TGG - chr2_1:79278813-79278832 None:intergenic 30.0%
!! ATTTGGTTGTTTTCCCAAAA+GGG + chr2_1:79278922-79278941 Msa0227960:five_prime_UTR 30.0%
! GAGAATGAATGCTTTTGTAA+GGG - chr2_1:79279294-79279313 None:intergenic 30.0%
!! CTTACAAAAGCATTCATTCT+CGG + chr2_1:79279293-79279312 Msa0227960:five_prime_UTR 30.0%
GATCCATTAGTGATATCATT+CGG + chr2_1:79279709-79279728 Msa0227960:CDS 30.0%
ATACTTAAAATGAATGCGGA+TGG + chr2_1:79279940-79279959 Msa0227960:intron 30.0%
TACTTAAAATGAATGCGGAT+GGG + chr2_1:79279941-79279960 Msa0227960:intron 30.0%
ATTTACGTATAGTCTACCAA+CGG - chr2_1:79280034-79280053 None:intergenic 30.0%
GTTTGATGTGGTATTATATG+AGG + chr2_1:79280070-79280089 Msa0227960:intron 30.0%
TTATCTTAGCAAATGCATCT+CGG + chr2_1:79280277-79280296 Msa0227960:intron 30.0%
GAGTAGATATCCTGTTTAAT+CGG - chr2_1:79280443-79280462 None:intergenic 30.0%
CAAAAAAAATGACATACGAC+AGG + chr2_1:79280476-79280495 Msa0227960:intron 30.0%
AAAAATGGAGTGAATACAGA+TGG + chr2_1:79280543-79280562 Msa0227960:CDS 30.0%
GAAAGAATCTGAATTGAACA+TGG + chr2_1:79280674-79280693 Msa0227960:CDS 30.0%
! TAAGACTAATGGATCCATAA+TGG - chr2_1:79280725-79280744 None:intergenic 30.0%
!! TGGTTCTGAAATAAGACTAA+TGG - chr2_1:79280736-79280755 None:intergenic 30.0%
!! AATCAAAAGCATTTGGAATG+AGG + chr2_1:79280872-79280891 Msa0227960:CDS 30.0%
GAGGATATAACAGAAAACTA+GGG + chr2_1:79280962-79280981 Msa0227960:intron 30.0%
TCACTTACCTATATAGAGAA+TGG - chr2_1:79281038-79281057 None:intergenic 30.0%
! GCTCTTTTCAAAATATGGAT+TGG - chr2_1:79281199-79281218 None:intergenic 30.0%
GAAAATAGGATAGCAACTTA+TGG - chr2_1:79281452-79281471 None:intergenic 30.0%
TATGGAGAGCTTATGAAAAT+AGG - chr2_1:79281466-79281485 None:intergenic 30.0%
! ACTGTTTTCATAAGCTACTA+TGG - chr2_1:79281484-79281503 None:intergenic 30.0%
CTAAACTATTCATCCATCTT+TGG + chr2_1:79281593-79281612 Msa0227960:intron 30.0%
!! GAATGCAGAATTTTAAAGGA+AGG + chr2_1:79281627-79281646 Msa0227960:intron 30.0%
!! AATTTTAAAGGAAGGGTAAG+TGG + chr2_1:79281635-79281654 Msa0227960:CDS 30.0%
!! ATTTTAAAGGAAGGGTAAGT+GGG + chr2_1:79281636-79281655 Msa0227960:CDS 30.0%
CTTTATGGAATTCAACATGA+AGG + chr2_1:79281863-79281882 Msa0227960:intron 30.0%
! GTTAAAGTCTCTCTCAATTT+TGG - chr2_1:79281894-79281913 None:intergenic 30.0%
TTAACATTTGCAAATGCTTG+TGG + chr2_1:79281909-79281928 Msa0227960:CDS 30.0%
! GAAATTTGATGATAATCCAG+AGG + chr2_1:79282033-79282052 Msa0227960:three_prime_UTR 30.0%
! ATTTGTCCAAGACTCTAGAA+AGG + chr2_1:79278065-79278084 Msa0227960:five_prime_UTR 35.0%
!!! TTTTGTCCTTTCTAGAGTCT+TGG - chr2_1:79278074-79278093 None:intergenic 35.0%
TTGCAACAGAATGAAGGATT+TGG - chr2_1:79278167-79278186 None:intergenic 35.0%
!! AGTCAAATGTTTGGTTTGTG+AGG - chr2_1:79278230-79278249 None:intergenic 35.0%
TCCATGGAAAATTACTTGGA+GGG - chr2_1:79278809-79278828 None:intergenic 35.0%
! AACAGAGACATGCTATCTTT+TGG + chr2_1:79278839-79278858 Msa0227960:five_prime_UTR 35.0%
!! TCTTTTGGAAGGAAAAGTGA+AGG + chr2_1:79278854-79278873 Msa0227960:five_prime_UTR 35.0%
TGAAATTTCTGCTGGTGATT+TGG + chr2_1:79278905-79278924 Msa0227960:five_prime_UTR 35.0%
!! GATTTGGTTGTTTTCCCAAA+AGG + chr2_1:79278921-79278940 Msa0227960:five_prime_UTR 35.0%
! AAGTACAACTCATCCCTTTT+GGG - chr2_1:79278938-79278957 None:intergenic 35.0%
AAAAGGGATGAGTTGTACTT+GGG + chr2_1:79278938-79278957 Msa0227960:five_prime_UTR 35.0%
TGCCTAATGTATGAAGATGA+AGG + chr2_1:79279017-79279036 Msa0227960:five_prime_UTR 35.0%
GTCCTTCATCTTCATACATT+AGG - chr2_1:79279022-79279041 None:intergenic 35.0%
! CTTAAATTTGGGTTTCACAC+TGG - chr2_1:79279234-79279253 None:intergenic 35.0%
CAGTGTGAAACCCAAATTTA+AGG + chr2_1:79279232-79279251 Msa0227960:five_prime_UTR 35.0%
TCCAGTGGTACCTTAAATTT+GGG - chr2_1:79279245-79279264 None:intergenic 35.0%
ATCCAGTGGTACCTTAAATT+TGG - chr2_1:79279246-79279265 None:intergenic 35.0%
! TACCACTGGATAAGTTTTTG+TGG + chr2_1:79279255-79279274 Msa0227960:five_prime_UTR 35.0%
! CGAGAATGAATGCTTTTGTA+AGG - chr2_1:79279295-79279314 None:intergenic 35.0%
AAGAAGAAGAACAAGATGTC+AGG + chr2_1:79279679-79279698 Msa0227960:exon 35.0%
TTTACGTATAGTCTACCAAC+GGG - chr2_1:79280033-79280052 None:intergenic 35.0%
CTATACGTAAATATTCACCG+AGG + chr2_1:79280042-79280061 Msa0227960:intron 35.0%
GTAAATATTCACCGAGGTTA+TGG + chr2_1:79280048-79280067 Msa0227960:intron 35.0%
TTGCTAAGATAACACAACTG+AGG - chr2_1:79280269-79280288 None:intergenic 35.0%
CGGAGGCTATTAAATTGAAA+TGG - chr2_1:79280319-79280338 None:intergenic 35.0%
ATAGCCTCCGTAAATATGAA+TGG + chr2_1:79280329-79280348 Msa0227960:intron 35.0%
CGTCCTTCCATTCATATTTA+CGG - chr2_1:79280339-79280358 None:intergenic 35.0%
TATGAGGGACTAGATTGATA+TGG + chr2_1:79280409-79280428 Msa0227960:intron 35.0%
GACTAGATTGATATGGTCAA+GGG + chr2_1:79280416-79280435 Msa0227960:intron 35.0%
AAAAATGACATACGACAGGT+AGG + chr2_1:79280480-79280499 Msa0227960:intron 35.0%
AAAATGACATACGACAGGTA+GGG + chr2_1:79280481-79280500 Msa0227960:intron 35.0%
GCAGACATCTTGAAGAAAAA+TGG + chr2_1:79280528-79280547 Msa0227960:CDS 35.0%
TTTGTGACATTGAGGAAAGA+TGG + chr2_1:79280603-79280622 Msa0227960:CDS 35.0%
TCAGTAACATATCAGCACTA+GGG - chr2_1:79280656-79280675 None:intergenic 35.0%
TTCAGTAACATATCAGCACT+AGG - chr2_1:79280657-79280676 None:intergenic 35.0%
GGAAGTCTATTAAATGATGG+AGG + chr2_1:79280943-79280962 Msa0227960:intron 35.0%
GGAGGATATAACAGAAAACT+AGG + chr2_1:79280961-79280980 Msa0227960:intron 35.0%
ATAACAGCTTCTTCATTCTC+AGG - chr2_1:79281092-79281111 None:intergenic 35.0%
AAGAAGCTGTTATGTCTCTA+TGG + chr2_1:79281099-79281118 Msa0227960:CDS 35.0%
AAGCTGCTTATTATCACTGA+TGG + chr2_1:79281134-79281153 Msa0227960:CDS 35.0%
TATTATCACTGATGGAGAGA+AGG + chr2_1:79281142-79281161 Msa0227960:CDS 35.0%
ATTATCACTGATGGAGAGAA+GGG + chr2_1:79281143-79281162 Msa0227960:CDS 35.0%
TGTTCGAAACAGTCTTACAA+GGG - chr2_1:79281403-79281422 None:intergenic 35.0%
TTGTTCGAAACAGTCTTACA+AGG - chr2_1:79281404-79281423 None:intergenic 35.0%
CAAGAGACCCTTCTATATTT+GGG + chr2_1:79281729-79281748 Msa0227960:CDS 35.0%
AAGAGACCCTTCTATATTTG+GGG + chr2_1:79281730-79281749 Msa0227960:CDS 35.0%
AGCATACCCCAAATATAGAA+GGG - chr2_1:79281739-79281758 None:intergenic 35.0%
AAGCATACCCCAAATATAGA+AGG - chr2_1:79281740-79281759 None:intergenic 35.0%
! GTATTTTTCTGTCACTAGAG+TGG - chr2_1:79281787-79281806 None:intergenic 35.0%
AATGAATATAGCTAGTCCTC+TGG - chr2_1:79282052-79282071 None:intergenic 35.0%
! ATTTGTCCAAGACTCTAGAA+AGG + chr2_1:79278065-79278084 Msa0227960:five_prime_UTR 35.0%
!!! TTTTGTCCTTTCTAGAGTCT+TGG - chr2_1:79278074-79278093 None:intergenic 35.0%
TTGCAACAGAATGAAGGATT+TGG - chr2_1:79278167-79278186 None:intergenic 35.0%
!! AGTCAAATGTTTGGTTTGTG+AGG - chr2_1:79278230-79278249 None:intergenic 35.0%
TCCATGGAAAATTACTTGGA+GGG - chr2_1:79278809-79278828 None:intergenic 35.0%
! AACAGAGACATGCTATCTTT+TGG + chr2_1:79278839-79278858 Msa0227960:five_prime_UTR 35.0%
!! TCTTTTGGAAGGAAAAGTGA+AGG + chr2_1:79278854-79278873 Msa0227960:five_prime_UTR 35.0%
TGAAATTTCTGCTGGTGATT+TGG + chr2_1:79278905-79278924 Msa0227960:five_prime_UTR 35.0%
!! GATTTGGTTGTTTTCCCAAA+AGG + chr2_1:79278921-79278940 Msa0227960:five_prime_UTR 35.0%
! AAGTACAACTCATCCCTTTT+GGG - chr2_1:79278938-79278957 None:intergenic 35.0%
AAAAGGGATGAGTTGTACTT+GGG + chr2_1:79278938-79278957 Msa0227960:five_prime_UTR 35.0%
TGCCTAATGTATGAAGATGA+AGG + chr2_1:79279017-79279036 Msa0227960:five_prime_UTR 35.0%
GTCCTTCATCTTCATACATT+AGG - chr2_1:79279022-79279041 None:intergenic 35.0%
! CTTAAATTTGGGTTTCACAC+TGG - chr2_1:79279234-79279253 None:intergenic 35.0%
CAGTGTGAAACCCAAATTTA+AGG + chr2_1:79279232-79279251 Msa0227960:five_prime_UTR 35.0%
TCCAGTGGTACCTTAAATTT+GGG - chr2_1:79279245-79279264 None:intergenic 35.0%
ATCCAGTGGTACCTTAAATT+TGG - chr2_1:79279246-79279265 None:intergenic 35.0%
! TACCACTGGATAAGTTTTTG+TGG + chr2_1:79279255-79279274 Msa0227960:five_prime_UTR 35.0%
! CGAGAATGAATGCTTTTGTA+AGG - chr2_1:79279295-79279314 None:intergenic 35.0%
AAGAAGAAGAACAAGATGTC+AGG + chr2_1:79279679-79279698 Msa0227960:exon 35.0%
TTTACGTATAGTCTACCAAC+GGG - chr2_1:79280033-79280052 None:intergenic 35.0%
CTATACGTAAATATTCACCG+AGG + chr2_1:79280042-79280061 Msa0227960:intron 35.0%
GTAAATATTCACCGAGGTTA+TGG + chr2_1:79280048-79280067 Msa0227960:intron 35.0%
TTGCTAAGATAACACAACTG+AGG - chr2_1:79280269-79280288 None:intergenic 35.0%
CGGAGGCTATTAAATTGAAA+TGG - chr2_1:79280319-79280338 None:intergenic 35.0%
ATAGCCTCCGTAAATATGAA+TGG + chr2_1:79280329-79280348 Msa0227960:intron 35.0%
CGTCCTTCCATTCATATTTA+CGG - chr2_1:79280339-79280358 None:intergenic 35.0%
TATGAGGGACTAGATTGATA+TGG + chr2_1:79280409-79280428 Msa0227960:intron 35.0%
GACTAGATTGATATGGTCAA+GGG + chr2_1:79280416-79280435 Msa0227960:intron 35.0%
AAAAATGACATACGACAGGT+AGG + chr2_1:79280480-79280499 Msa0227960:intron 35.0%
AAAATGACATACGACAGGTA+GGG + chr2_1:79280481-79280500 Msa0227960:intron 35.0%
GCAGACATCTTGAAGAAAAA+TGG + chr2_1:79280528-79280547 Msa0227960:CDS 35.0%
TTTGTGACATTGAGGAAAGA+TGG + chr2_1:79280603-79280622 Msa0227960:CDS 35.0%
TCAGTAACATATCAGCACTA+GGG - chr2_1:79280656-79280675 None:intergenic 35.0%
TTCAGTAACATATCAGCACT+AGG - chr2_1:79280657-79280676 None:intergenic 35.0%
GGAAGTCTATTAAATGATGG+AGG + chr2_1:79280943-79280962 Msa0227960:intron 35.0%
GGAGGATATAACAGAAAACT+AGG + chr2_1:79280961-79280980 Msa0227960:intron 35.0%
ATAACAGCTTCTTCATTCTC+AGG - chr2_1:79281092-79281111 None:intergenic 35.0%
AAGAAGCTGTTATGTCTCTA+TGG + chr2_1:79281099-79281118 Msa0227960:CDS 35.0%
AAGCTGCTTATTATCACTGA+TGG + chr2_1:79281134-79281153 Msa0227960:CDS 35.0%
TATTATCACTGATGGAGAGA+AGG + chr2_1:79281142-79281161 Msa0227960:CDS 35.0%
ATTATCACTGATGGAGAGAA+GGG + chr2_1:79281143-79281162 Msa0227960:CDS 35.0%
TGTTCGAAACAGTCTTACAA+GGG - chr2_1:79281403-79281422 None:intergenic 35.0%
TTGTTCGAAACAGTCTTACA+AGG - chr2_1:79281404-79281423 None:intergenic 35.0%
CAAGAGACCCTTCTATATTT+GGG + chr2_1:79281729-79281748 Msa0227960:CDS 35.0%
AAGAGACCCTTCTATATTTG+GGG + chr2_1:79281730-79281749 Msa0227960:CDS 35.0%
AGCATACCCCAAATATAGAA+GGG - chr2_1:79281739-79281758 None:intergenic 35.0%
AAGCATACCCCAAATATAGA+AGG - chr2_1:79281740-79281759 None:intergenic 35.0%
! GTATTTTTCTGTCACTAGAG+TGG - chr2_1:79281787-79281806 None:intergenic 35.0%
AATGAATATAGCTAGTCCTC+TGG - chr2_1:79282052-79282071 None:intergenic 35.0%
ATGGCATCATCATCATGTGT+AGG + chr2_1:79278193-79278212 Msa0227960:five_prime_UTR 40.0%
! CTTGGTAGCAGTCAAATGTT+TGG - chr2_1:79278239-79278258 None:intergenic 40.0%
GGCAAAGTTACACTTACCTT+GGG - chr2_1:79278262-79278281 None:intergenic 40.0%
AGGCAAAGTTACACTTACCT+TGG - chr2_1:79278263-79278282 None:intergenic 40.0%
GTGTAACTTTGCCTTCAACA+AGG + chr2_1:79278269-79278288 Msa0227960:five_prime_UTR 40.0%
ACAACTCTTCTCCTTGTTGA+AGG - chr2_1:79278283-79278302 None:intergenic 40.0%
CTAGAAGAGCAACTAGCATA+GGG - chr2_1:79278558-79278577 None:intergenic 40.0%
ACTAGAAGAGCAACTAGCAT+AGG - chr2_1:79278559-79278578 None:intergenic 40.0%
! TGACTGTGTACGCACATTTT+TGG + chr2_1:79278759-79278778 Msa0227960:intron 40.0%
GTCCATGGAAAATTACTTGG+AGG - chr2_1:79278810-79278829 None:intergenic 40.0%
TCTGTTGCATCATATGTCCA+TGG - chr2_1:79278825-79278844 None:intergenic 40.0%
! GAGACATGCTATCTTTTGGA+AGG + chr2_1:79278843-79278862 Msa0227960:five_prime_UTR 40.0%
! CAAGTACAACTCATCCCTTT+TGG - chr2_1:79278939-79278958 None:intergenic 40.0%
CAAAAGGGATGAGTTGTACT+TGG + chr2_1:79278937-79278956 Msa0227960:five_prime_UTR 40.0%
! ACCCAAATTTAAGGTACCAC+TGG + chr2_1:79279241-79279260 Msa0227960:five_prime_UTR 40.0%
CACCACAAAAACTTATCCAG+TGG - chr2_1:79279260-79279279 None:intergenic 40.0%
TCGCCGAATGATATCACTAA+TGG - chr2_1:79279715-79279734 None:intergenic 40.0%
! GATTTTGTTCCAGACACATC+TGG + chr2_1:79279745-79279764 Msa0227960:CDS 40.0%
! GAAAGCATAAGATTCAGCCA+AGG - chr2_1:79279776-79279795 None:intergenic 40.0%
ATTAAGAACCTTGCCGATGA+AGG - chr2_1:79279866-79279885 None:intergenic 40.0%
TAAATCGCAGCTAATGCAAG+CGG - chr2_1:79279991-79280010 None:intergenic 40.0%
TTACGTATAGTCTACCAACG+GGG - chr2_1:79280032-79280051 None:intergenic 40.0%
ACCACATCAAACCATAACCT+CGG - chr2_1:79280062-79280081 None:intergenic 40.0%
CCTTCCATTCATATTTACGG+AGG - chr2_1:79280336-79280355 None:intergenic 40.0%
CCTCCGTAAATATGAATGGA+AGG + chr2_1:79280333-79280352 Msa0227960:intron 40.0%
GGACTAGATTGATATGGTCA+AGG + chr2_1:79280415-79280434 Msa0227960:intron 40.0%
AAATGACATACGACAGGTAG+GGG + chr2_1:79280482-79280501 Msa0227960:intron 40.0%
! TGGTGTTCTTTTTGACACAG+AGG + chr2_1:79280563-79280582 Msa0227960:CDS 40.0%
!!! CATTGGCTTTTGTGACATTG+AGG + chr2_1:79280595-79280614 Msa0227960:CDS 40.0%
ATTGAGGAAAGATGGAGAGA+GGG + chr2_1:79280611-79280630 Msa0227960:CDS 40.0%
ACCATGTAGATCTGCTCATA+TGG + chr2_1:79280752-79280771 Msa0227960:CDS 40.0%
TGTCCTATGATCCAAATGTC+AGG + chr2_1:79280811-79280830 Msa0227960:CDS 40.0%
AAGCCTGACATTTGGATCAT+AGG - chr2_1:79280817-79280836 None:intergenic 40.0%
!! GGTCTGGAATCAAAAGCATT+TGG + chr2_1:79280865-79280884 Msa0227960:CDS 40.0%
! GAATGAGGCTGATTTCATCA+AGG + chr2_1:79280887-79280906 Msa0227960:CDS 40.0%
GGGTTGTAGATATGTCACTA+AGG + chr2_1:79281163-79281182 Msa0227960:CDS 40.0%
AGTCTTACAAGGGCTTATGT+CGG - chr2_1:79281393-79281412 None:intergenic 40.0%
GCAAGAGACCCTTCTATATT+TGG + chr2_1:79281728-79281747 Msa0227960:CDS 40.0%
AGCAATGTGTACAACACAGA+AGG + chr2_1:79281932-79281951 Msa0227960:CDS 40.0%
GCAATGTGTACAACACAGAA+GGG + chr2_1:79281933-79281952 Msa0227960:CDS 40.0%
!! AGTTTAGTTGGCTTTAGAGC+TGG - chr2_1:79282006-79282025 None:intergenic 40.0%
ATGGCATCATCATCATGTGT+AGG + chr2_1:79278193-79278212 Msa0227960:five_prime_UTR 40.0%
! CTTGGTAGCAGTCAAATGTT+TGG - chr2_1:79278239-79278258 None:intergenic 40.0%
GGCAAAGTTACACTTACCTT+GGG - chr2_1:79278262-79278281 None:intergenic 40.0%
AGGCAAAGTTACACTTACCT+TGG - chr2_1:79278263-79278282 None:intergenic 40.0%
GTGTAACTTTGCCTTCAACA+AGG + chr2_1:79278269-79278288 Msa0227960:five_prime_UTR 40.0%
ACAACTCTTCTCCTTGTTGA+AGG - chr2_1:79278283-79278302 None:intergenic 40.0%
CTAGAAGAGCAACTAGCATA+GGG - chr2_1:79278558-79278577 None:intergenic 40.0%
ACTAGAAGAGCAACTAGCAT+AGG - chr2_1:79278559-79278578 None:intergenic 40.0%
! TGACTGTGTACGCACATTTT+TGG + chr2_1:79278759-79278778 Msa0227960:intron 40.0%
GTCCATGGAAAATTACTTGG+AGG - chr2_1:79278810-79278829 None:intergenic 40.0%
TCTGTTGCATCATATGTCCA+TGG - chr2_1:79278825-79278844 None:intergenic 40.0%
! GAGACATGCTATCTTTTGGA+AGG + chr2_1:79278843-79278862 Msa0227960:five_prime_UTR 40.0%
! CAAGTACAACTCATCCCTTT+TGG - chr2_1:79278939-79278958 None:intergenic 40.0%
CAAAAGGGATGAGTTGTACT+TGG + chr2_1:79278937-79278956 Msa0227960:five_prime_UTR 40.0%
! ACCCAAATTTAAGGTACCAC+TGG + chr2_1:79279241-79279260 Msa0227960:five_prime_UTR 40.0%
CACCACAAAAACTTATCCAG+TGG - chr2_1:79279260-79279279 None:intergenic 40.0%
TCGCCGAATGATATCACTAA+TGG - chr2_1:79279715-79279734 None:intergenic 40.0%
! GATTTTGTTCCAGACACATC+TGG + chr2_1:79279745-79279764 Msa0227960:CDS 40.0%
! GAAAGCATAAGATTCAGCCA+AGG - chr2_1:79279776-79279795 None:intergenic 40.0%
ATTAAGAACCTTGCCGATGA+AGG - chr2_1:79279866-79279885 None:intergenic 40.0%
TAAATCGCAGCTAATGCAAG+CGG - chr2_1:79279991-79280010 None:intergenic 40.0%
TTACGTATAGTCTACCAACG+GGG - chr2_1:79280032-79280051 None:intergenic 40.0%
ACCACATCAAACCATAACCT+CGG - chr2_1:79280062-79280081 None:intergenic 40.0%
CCTTCCATTCATATTTACGG+AGG - chr2_1:79280336-79280355 None:intergenic 40.0%
CCTCCGTAAATATGAATGGA+AGG + chr2_1:79280333-79280352 Msa0227960:intron 40.0%
GGACTAGATTGATATGGTCA+AGG + chr2_1:79280415-79280434 Msa0227960:intron 40.0%
AAATGACATACGACAGGTAG+GGG + chr2_1:79280482-79280501 Msa0227960:intron 40.0%
! TGGTGTTCTTTTTGACACAG+AGG + chr2_1:79280563-79280582 Msa0227960:CDS 40.0%
!!! CATTGGCTTTTGTGACATTG+AGG + chr2_1:79280595-79280614 Msa0227960:CDS 40.0%
ATTGAGGAAAGATGGAGAGA+GGG + chr2_1:79280611-79280630 Msa0227960:CDS 40.0%
ACCATGTAGATCTGCTCATA+TGG + chr2_1:79280752-79280771 Msa0227960:CDS 40.0%
TGTCCTATGATCCAAATGTC+AGG + chr2_1:79280811-79280830 Msa0227960:CDS 40.0%
AAGCCTGACATTTGGATCAT+AGG - chr2_1:79280817-79280836 None:intergenic 40.0%
!! GGTCTGGAATCAAAAGCATT+TGG + chr2_1:79280865-79280884 Msa0227960:CDS 40.0%
! GAATGAGGCTGATTTCATCA+AGG + chr2_1:79280887-79280906 Msa0227960:CDS 40.0%
GGGTTGTAGATATGTCACTA+AGG + chr2_1:79281163-79281182 Msa0227960:CDS 40.0%
AGTCTTACAAGGGCTTATGT+CGG - chr2_1:79281393-79281412 None:intergenic 40.0%
GCAAGAGACCCTTCTATATT+TGG + chr2_1:79281728-79281747 Msa0227960:CDS 40.0%
AGCAATGTGTACAACACAGA+AGG + chr2_1:79281932-79281951 Msa0227960:CDS 40.0%
GCAATGTGTACAACACAGAA+GGG + chr2_1:79281933-79281952 Msa0227960:CDS 40.0%
!! AGTTTAGTTGGCTTTAGAGC+TGG - chr2_1:79282006-79282025 None:intergenic 40.0%
AGTTACACTTACCTTGGGCT+TGG - chr2_1:79278257-79278276 None:intergenic 45.0%
! AACACCAAGTTGAGTGAGCT+TGG - chr2_1:79278362-79278381 None:intergenic 45.0%
!! AGCTCACTCAACTTGGTGTT+AGG + chr2_1:79278362-79278381 Msa0227960:five_prime_UTR 45.0%
! GCCCTCCAAGTAATTTTCCA+TGG + chr2_1:79278805-79278824 Msa0227960:five_prime_UTR 45.0%
AAAGTGAAGGTCACTCCTAG+TGG + chr2_1:79278867-79278886 Msa0227960:five_prime_UTR 45.0%
AAGTGAAGGTCACTCCTAGT+GGG + chr2_1:79278868-79278887 Msa0227960:five_prime_UTR 45.0%
GAGGCAGTTGAAATTTCTGC+TGG + chr2_1:79278897-79278916 Msa0227960:five_prime_UTR 45.0%
TGTACTTGGGATGTGTCTGT+TGG + chr2_1:79278951-79278970 Msa0227960:five_prime_UTR 45.0%
CACACTGGTCCCACTTATAT+AGG - chr2_1:79279219-79279238 None:intergenic 45.0%
! AGACCAAGCAGCGCAATTTT+TGG + chr2_1:79279370-79279389 Msa0227960:five_prime_UTR 45.0%
TGACCAAAAATTGCGCTGCT+TGG - chr2_1:79279376-79279395 None:intergenic 45.0%
!!! AGCAGCGCAATTTTTGGTCA+AGG + chr2_1:79279376-79279395 Msa0227960:five_prime_UTR 45.0%
AAGGATACACCAGATGTGTC+TGG - chr2_1:79279757-79279776 None:intergenic 45.0%
AGACACATCTGGTGTATCCT+TGG + chr2_1:79279756-79279775 Msa0227960:CDS 45.0%
TATGCTTTCATCAAAGCCCC+TGG + chr2_1:79279787-79279806 Msa0227960:CDS 45.0%
GCTTGCATTAGCTGCGATTT+AGG + chr2_1:79279990-79280009 Msa0227960:intron 45.0%
ACCGAGGTTATGGTTTGATG+TGG + chr2_1:79280058-79280077 Msa0227960:intron 45.0%
TAGGGGATGATGAGTTTGGA+AGG + chr2_1:79280499-79280518 Msa0227960:CDS 45.0%
CATTGAGGAAAGATGGAGAG+AGG + chr2_1:79280610-79280629 Msa0227960:CDS 45.0%
GCCATATGAGCAGATCTACA+TGG - chr2_1:79280756-79280775 None:intergenic 45.0%
ACCTTCTCTAGCAGCTTTCA+TGG - chr2_1:79280781-79280800 None:intergenic 45.0%
ATGAAAGCTGCTAGAGAAGG+TGG + chr2_1:79280780-79280799 Msa0227960:CDS 45.0%
CACAAAGGAAGCCTGACATT+TGG - chr2_1:79280825-79280844 None:intergenic 45.0%
CAAATGTCAGGCTTCCTTTG+TGG + chr2_1:79280823-79280842 Msa0227960:CDS 45.0%
GTGAAGGCAATTGACACAAC+TGG + chr2_1:79281665-79281684 Msa0227960:CDS 45.0%
!!! GGTGCTGGTGATTCTTTTGT+TGG + chr2_1:79281686-79281705 Msa0227960:CDS 45.0%
AGTTACACTTACCTTGGGCT+TGG - chr2_1:79278257-79278276 None:intergenic 45.0%
! AACACCAAGTTGAGTGAGCT+TGG - chr2_1:79278362-79278381 None:intergenic 45.0%
!! AGCTCACTCAACTTGGTGTT+AGG + chr2_1:79278362-79278381 Msa0227960:five_prime_UTR 45.0%
! GCCCTCCAAGTAATTTTCCA+TGG + chr2_1:79278805-79278824 Msa0227960:five_prime_UTR 45.0%
AAAGTGAAGGTCACTCCTAG+TGG + chr2_1:79278867-79278886 Msa0227960:five_prime_UTR 45.0%
AAGTGAAGGTCACTCCTAGT+GGG + chr2_1:79278868-79278887 Msa0227960:five_prime_UTR 45.0%
GAGGCAGTTGAAATTTCTGC+TGG + chr2_1:79278897-79278916 Msa0227960:five_prime_UTR 45.0%
TGTACTTGGGATGTGTCTGT+TGG + chr2_1:79278951-79278970 Msa0227960:five_prime_UTR 45.0%
CACACTGGTCCCACTTATAT+AGG - chr2_1:79279219-79279238 None:intergenic 45.0%
! AGACCAAGCAGCGCAATTTT+TGG + chr2_1:79279370-79279389 Msa0227960:five_prime_UTR 45.0%
TGACCAAAAATTGCGCTGCT+TGG - chr2_1:79279376-79279395 None:intergenic 45.0%
!!! AGCAGCGCAATTTTTGGTCA+AGG + chr2_1:79279376-79279395 Msa0227960:five_prime_UTR 45.0%
AAGGATACACCAGATGTGTC+TGG - chr2_1:79279757-79279776 None:intergenic 45.0%
AGACACATCTGGTGTATCCT+TGG + chr2_1:79279756-79279775 Msa0227960:CDS 45.0%
TATGCTTTCATCAAAGCCCC+TGG + chr2_1:79279787-79279806 Msa0227960:CDS 45.0%
GCTTGCATTAGCTGCGATTT+AGG + chr2_1:79279990-79280009 Msa0227960:intron 45.0%
ACCGAGGTTATGGTTTGATG+TGG + chr2_1:79280058-79280077 Msa0227960:intron 45.0%
TAGGGGATGATGAGTTTGGA+AGG + chr2_1:79280499-79280518 Msa0227960:CDS 45.0%
CATTGAGGAAAGATGGAGAG+AGG + chr2_1:79280610-79280629 Msa0227960:CDS 45.0%
GCCATATGAGCAGATCTACA+TGG - chr2_1:79280756-79280775 None:intergenic 45.0%
ACCTTCTCTAGCAGCTTTCA+TGG - chr2_1:79280781-79280800 None:intergenic 45.0%
ATGAAAGCTGCTAGAGAAGG+TGG + chr2_1:79280780-79280799 Msa0227960:CDS 45.0%
CACAAAGGAAGCCTGACATT+TGG - chr2_1:79280825-79280844 None:intergenic 45.0%
CAAATGTCAGGCTTCCTTTG+TGG + chr2_1:79280823-79280842 Msa0227960:CDS 45.0%
GTGAAGGCAATTGACACAAC+TGG + chr2_1:79281665-79281684 Msa0227960:CDS 45.0%
!!! GGTGCTGGTGATTCTTTTGT+TGG + chr2_1:79281686-79281705 Msa0227960:CDS 45.0%
TTTGACTGCTACCAAGCCCA+AGG + chr2_1:79278243-79278262 Msa0227960:five_prime_UTR 50.0%
GCAGCTGTCACAGAGAAACT+TGG + chr2_1:79278307-79278326 Msa0227960:five_prime_UTR 50.0%
AGTTGAGTGAGCTTGGACTC+AGG - chr2_1:79278355-79278374 None:intergenic 50.0%
GAGTCCAAGCTCACTCAACT+TGG + chr2_1:79278355-79278374 Msa0227960:five_prime_UTR 50.0%
!! CTCAACTTGGTGTTAGGCAG+TGG + chr2_1:79278368-79278387 Msa0227960:five_prime_UTR 50.0%
AGTGAAGGTCACTCCTAGTG+GGG + chr2_1:79278869-79278888 Msa0227960:five_prime_UTR 50.0%
TTGGGATGTGTCTGTTGGTG+TGG + chr2_1:79278956-79278975 Msa0227960:five_prime_UTR 50.0%
GCTTGTGCTGTGTCCAAACT+TGG + chr2_1:79279829-79279848 Msa0227960:CDS 50.0%
TGTGCTGTGTCCAAACTTGG+TGG + chr2_1:79279832-79279851 Msa0227960:CDS 50.0%
CTAATCGAGAGTTTCCCCGT+TGG + chr2_1:79280015-79280034 Msa0227960:intron 50.0%
GGTCAAGGGACCGATTAAAC+AGG + chr2_1:79280430-79280449 Msa0227960:intron 50.0%
CAGGTAGGGGATGATGAGTT+TGG + chr2_1:79280495-79280514 Msa0227960:intron 50.0%
CACAGAGGCAAGAACTGCAT+TGG + chr2_1:79280578-79280597 Msa0227960:CDS 50.0%
GCCATGAAAGCTGCTAGAGA+AGG + chr2_1:79280777-79280796 Msa0227960:CDS 50.0%
! GGTAAGTGGGTTCTCAGTGA+AGG + chr2_1:79281649-79281668 Msa0227960:CDS 50.0%
GCAATTGACACAACTGGTGC+TGG + chr2_1:79281671-79281690 Msa0227960:CDS 50.0%
TGGTGCACTTCTCAGAGATG+TGG + chr2_1:79281706-79281725 Msa0227960:CDS 50.0%
! AGCAGTTGGAAGTGCAGGAA+TGG - chr2_1:79281961-79281980 None:intergenic 50.0%
! TCTTCAGCAGTTGGAAGTGC+AGG - chr2_1:79281966-79281985 None:intergenic 50.0%
TGCACTTCCAACTGCTGAAG+AGG + chr2_1:79281965-79281984 Msa0227960:CDS 50.0%
TTCTGAGCCTCTTCAGCAGT+TGG - chr2_1:79281975-79281994 None:intergenic 50.0%
TTTGACTGCTACCAAGCCCA+AGG + chr2_1:79278243-79278262 Msa0227960:five_prime_UTR 50.0%
GCAGCTGTCACAGAGAAACT+TGG + chr2_1:79278307-79278326 Msa0227960:five_prime_UTR 50.0%
AGTTGAGTGAGCTTGGACTC+AGG - chr2_1:79278355-79278374 None:intergenic 50.0%
GAGTCCAAGCTCACTCAACT+TGG + chr2_1:79278355-79278374 Msa0227960:five_prime_UTR 50.0%
!! CTCAACTTGGTGTTAGGCAG+TGG + chr2_1:79278368-79278387 Msa0227960:five_prime_UTR 50.0%
AGTGAAGGTCACTCCTAGTG+GGG + chr2_1:79278869-79278888 Msa0227960:five_prime_UTR 50.0%
TTGGGATGTGTCTGTTGGTG+TGG + chr2_1:79278956-79278975 Msa0227960:five_prime_UTR 50.0%
GCTTGTGCTGTGTCCAAACT+TGG + chr2_1:79279829-79279848 Msa0227960:CDS 50.0%
TGTGCTGTGTCCAAACTTGG+TGG + chr2_1:79279832-79279851 Msa0227960:CDS 50.0%
CTAATCGAGAGTTTCCCCGT+TGG + chr2_1:79280015-79280034 Msa0227960:intron 50.0%
GGTCAAGGGACCGATTAAAC+AGG + chr2_1:79280430-79280449 Msa0227960:intron 50.0%
CAGGTAGGGGATGATGAGTT+TGG + chr2_1:79280495-79280514 Msa0227960:intron 50.0%
CACAGAGGCAAGAACTGCAT+TGG + chr2_1:79280578-79280597 Msa0227960:CDS 50.0%
GCCATGAAAGCTGCTAGAGA+AGG + chr2_1:79280777-79280796 Msa0227960:CDS 50.0%
! GGTAAGTGGGTTCTCAGTGA+AGG + chr2_1:79281649-79281668 Msa0227960:CDS 50.0%
GCAATTGACACAACTGGTGC+TGG + chr2_1:79281671-79281690 Msa0227960:CDS 50.0%
TGGTGCACTTCTCAGAGATG+TGG + chr2_1:79281706-79281725 Msa0227960:CDS 50.0%
! AGCAGTTGGAAGTGCAGGAA+TGG - chr2_1:79281961-79281980 None:intergenic 50.0%
! TCTTCAGCAGTTGGAAGTGC+AGG - chr2_1:79281966-79281985 None:intergenic 50.0%
TGCACTTCCAACTGCTGAAG+AGG + chr2_1:79281965-79281984 Msa0227960:CDS 50.0%
TTCTGAGCCTCTTCAGCAGT+TGG - chr2_1:79281975-79281994 None:intergenic 50.0%
GAGTGAGCTTGGACTCAGGA+GGG - chr2_1:79278351-79278370 None:intergenic 55.0%
TGAGTGAGCTTGGACTCAGG+AGG - chr2_1:79278352-79278371 None:intergenic 55.0%
CACTCCTAGTGGGGCTAATG+AGG + chr2_1:79278878-79278897 Msa0227960:five_prime_UTR 55.0%
ACTGCCTCATTAGCCCCACT+AGG - chr2_1:79278885-79278904 None:intergenic 55.0%
GCTTTCATCAAAGCCCCTGG+CGG + chr2_1:79279790-79279809 Msa0227960:CDS 55.0%
AGCACAAGCCACATTGGCAG+GGG - chr2_1:79279818-79279837 None:intergenic 55.0%
CAGCACAAGCCACATTGGCA+GGG - chr2_1:79279819-79279838 None:intergenic 55.0%
ACAGCACAAGCCACATTGGC+AGG - chr2_1:79279820-79279839 None:intergenic 55.0%
GGACACAGCACAAGCCACAT+TGG - chr2_1:79279824-79279843 None:intergenic 55.0%
GGCAGCATTGCCACCAAGTT+TGG - chr2_1:79279845-79279864 None:intergenic 55.0%
GGTGGCAATGCTGCCTTCAT+CGG + chr2_1:79279850-79279869 Msa0227960:CDS 55.0%
CAATGCTGCCTTCATCGGCA+AGG + chr2_1:79279855-79279874 Msa0227960:CDS 55.0%
TCGCAGCTAATGCAAGCGGA+AGG - chr2_1:79279987-79280006 None:intergenic 55.0%
TCCTTTGTGGCCTTCTGCTG+AGG + chr2_1:79280836-79280855 Msa0227960:CDS 55.0%
GAGTGAGCTTGGACTCAGGA+GGG - chr2_1:79278351-79278370 None:intergenic 55.0%
TGAGTGAGCTTGGACTCAGG+AGG - chr2_1:79278352-79278371 None:intergenic 55.0%
CACTCCTAGTGGGGCTAATG+AGG + chr2_1:79278878-79278897 Msa0227960:five_prime_UTR 55.0%
ACTGCCTCATTAGCCCCACT+AGG - chr2_1:79278885-79278904 None:intergenic 55.0%
GCTTTCATCAAAGCCCCTGG+CGG + chr2_1:79279790-79279809 Msa0227960:CDS 55.0%
AGCACAAGCCACATTGGCAG+GGG - chr2_1:79279818-79279837 None:intergenic 55.0%
CAGCACAAGCCACATTGGCA+GGG - chr2_1:79279819-79279838 None:intergenic 55.0%
ACAGCACAAGCCACATTGGC+AGG - chr2_1:79279820-79279839 None:intergenic 55.0%
GGACACAGCACAAGCCACAT+TGG - chr2_1:79279824-79279843 None:intergenic 55.0%
GGCAGCATTGCCACCAAGTT+TGG - chr2_1:79279845-79279864 None:intergenic 55.0%
GGTGGCAATGCTGCCTTCAT+CGG + chr2_1:79279850-79279869 Msa0227960:CDS 55.0%
CAATGCTGCCTTCATCGGCA+AGG + chr2_1:79279855-79279874 Msa0227960:CDS 55.0%
TCGCAGCTAATGCAAGCGGA+AGG - chr2_1:79279987-79280006 None:intergenic 55.0%
TCCTTTGTGGCCTTCTGCTG+AGG + chr2_1:79280836-79280855 Msa0227960:CDS 55.0%
GCCTCAGCAGAAGGCCACAA+AGG - chr2_1:79280840-79280859 None:intergenic 60.0%
GACCTAGCAGCCTCAGCAGA+AGG - chr2_1:79280849-79280868 None:intergenic 60.0%
TCTGCTGAGGCTGCTAGGTC+TGG + chr2_1:79280849-79280868 Msa0227960:CDS 60.0%
GCCTCAGCAGAAGGCCACAA+AGG - chr2_1:79280840-79280859 None:intergenic 60.0%
GACCTAGCAGCCTCAGCAGA+AGG - chr2_1:79280849-79280868 None:intergenic 60.0%
TCTGCTGAGGCTGCTAGGTC+TGG + chr2_1:79280849-79280868 Msa0227960:CDS 60.0%
GGCCTTCTGCTGAGGCTGCT+AGG + chr2_1:79280844-79280863 Msa0227960:CDS 65.0%
GGCCTTCTGCTGAGGCTGCT+AGG + chr2_1:79280844-79280863 Msa0227960:CDS 65.0%
!! ATTGGCAGGGGCACCGCCAG+GGG - chr2_1:79279806-79279825 None:intergenic 70.0%
!! CATTGGCAGGGGCACCGCCA+GGG - chr2_1:79279807-79279826 None:intergenic 70.0%
!! ACATTGGCAGGGGCACCGCC+AGG - chr2_1:79279808-79279827 None:intergenic 70.0%
TGGCGGTGCCCCTGCCAATG+TGG + chr2_1:79279807-79279826 Msa0227960:CDS 70.0%
!! ATTGGCAGGGGCACCGCCAG+GGG - chr2_1:79279806-79279825 None:intergenic 70.0%
!! CATTGGCAGGGGCACCGCCA+GGG - chr2_1:79279807-79279826 None:intergenic 70.0%
!! ACATTGGCAGGGGCACCGCC+AGG - chr2_1:79279808-79279827 None:intergenic 70.0%
TGGCGGTGCCCCTGCCAATG+TGG + chr2_1:79279807-79279826 Msa0227960:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 79278027 79282106 79278027 ID=Msa0227960;Name=Msa0227960
chr2_1 mRNA 79278027 79282106 79278027 ID=Msa0227960-mRNA-1;Parent=Msa0227960;Name=Msa0227960-mRNA-1;_AED=0.06;_eAED=0.06;_QI=1266|1|1|1|1|0.83|6|84|327
chr2_1 exon 79278027 79278395 79278027 ID=Msa0227960-mRNA-1:exon:24108;Parent=Msa0227960-mRNA-1
chr2_1 exon 79278797 79279876 79278797 ID=Msa0227960-mRNA-1:exon:24109;Parent=Msa0227960-mRNA-1
chr2_1 exon 79280498 79280908 79280498 ID=Msa0227960-mRNA-1:exon:24110;Parent=Msa0227960-mRNA-1
chr2_1 exon 79281050 79281184 79281050 ID=Msa0227960-mRNA-1:exon:24111;Parent=Msa0227960-mRNA-1
chr2_1 exon 79281635 79281751 79281635 ID=Msa0227960-mRNA-1:exon:24112;Parent=Msa0227960-mRNA-1
chr2_1 exon 79281885 79282106 79281885 ID=Msa0227960-mRNA-1:exon:24113;Parent=Msa0227960-mRNA-1
chr2_1 five_prime_UTR 79278027 79278395 79278027 ID=Msa0227960-mRNA-1:five_prime_utr;Parent=Msa0227960-mRNA-1
chr2_1 five_prime_UTR 79278797 79279693 79278797 ID=Msa0227960-mRNA-1:five_prime_utr;Parent=Msa0227960-mRNA-1
chr2_1 CDS 79279694 79279876 79279694 ID=Msa0227960-mRNA-1:cds;Parent=Msa0227960-mRNA-1
chr2_1 CDS 79280498 79280908 79280498 ID=Msa0227960-mRNA-1:cds;Parent=Msa0227960-mRNA-1
chr2_1 CDS 79281050 79281184 79281050 ID=Msa0227960-mRNA-1:cds;Parent=Msa0227960-mRNA-1
chr2_1 CDS 79281635 79281751 79281635 ID=Msa0227960-mRNA-1:cds;Parent=Msa0227960-mRNA-1
chr2_1 CDS 79281885 79282022 79281885 ID=Msa0227960-mRNA-1:cds;Parent=Msa0227960-mRNA-1
chr2_1 three_prime_UTR 79282023 79282106 79282023 ID=Msa0227960-mRNA-1:three_prime_utr;Parent=Msa0227960-mRNA-1
Gene Sequence

>Msa0227960

ATGTCAGGCTCAAAAGATCCATTAGTGATATCATTCGGCGAGATGCTCATAGATTTTGTTCCAGACACATCTGGTGTATCCTTGGCTGAATCTTATGCTTTCATCAAAGCCCCTGGCGGTGCCCCTGCCAATGTGGCTTGTGCTGTGTCCAAACTTGGTGGCAATGCTGCCTTCATCGGCAAGGTAGGGGATGATGAGTTTGGAAGGATGCTAGCAGACATCTTGAAGAAAAATGGAGTGAATACAGATGGTGTTCTTTTTGACACAGAGGCAAGAACTGCATTGGCTTTTGTGACATTGAGGAAAGATGGAGAGAGGGAGTTCATGTTTTATAGAAACCCTAGTGCTGATATGTTACTGAAAGAATCTGAATTGAACATGGATATGATTAAGAATACAAAGATATTCCATTATGGATCCATTAGTCTTATTTCAGAACCATGTAGATCTGCTCATATGGCTGCCATGAAAGCTGCTAGAGAAGGTGGTGCTTTGTTGTCCTATGATCCAAATGTCAGGCTTCCTTTGTGGCCTTCTGCTGAGGCTGCTAGGTCTGGAATCAAAAGCATTTGGAATGAGGCTGATTTCATCAAGGTAAGTGATGATGAAGTTCAATTTCTTACACAAAAAGATCCTGAGAATGAAGAAGCTGTTATGTCTCTATGGCATGACAAGTTGAAGCTGCTTATTATCACTGATGGAGAGAAGGGTTGTAGATATGTCACTAAGAATTTTAAAGGAAGGGTAAGTGGGTTCTCAGTGAAGGCAATTGACACAACTGGTGCTGGTGATTCTTTTGTTGGTGCACTTCTCAGAGATGTGGCAAGAGACCCTTCTATATTTGGGGATGAACCAAAATTGAGAGAGACTTTAACATTTGCAAATGCTTGTGGAGCAATGTGTACAACACAGAAGGGAGCCATTCCTGCACTTCCAACTGCTGAAGAGGCTCAGAAATTTATTTCCAGCTCTAAAGCCAACTAA

Protein sequence

>Msa0227960

MSGSKDPLVISFGEMLIDFVPDTSGVSLAESYAFIKAPGGAPANVACAVSKLGGNAAFIGKVGDDEFGRMLADILKKNGVNTDGVLFDTEARTALAFVTLRKDGEREFMFYRNPSADMLLKESELNMDMIKNTKIFHYGSISLISEPCRSAHMAAMKAAREGGALLSYDPNVRLPLWPSAEAARSGIKSIWNEADFIKVSDDEVQFLTQKDPENEEAVMSLWHDKLKLLIITDGEKGCRYVTKNFKGRVSGFSVKAIDTTGAGDSFVGALLRDVARDPSIFGDEPKLRETLTFANACGAMCTTQKGAIPALPTAEEAQKFISSSKAN*