AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0295240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0295240 MtrunA17_Chr2g0317401 97.231 325 9 0 1 325 1 325 0.0 648
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0295240 AT1G53120.1 63.497 326 104 5 6 325 4 320 2.40e-148 420
Msa0295240 AT1G53120.2 63.497 326 103 6 6 325 4 319 1.25e-146 416

Find 84 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTTCCTTGGCTCAATTCT+TGG 0.207293 2_3:-47643775 Msa0295240:CDS
GTTCTTTGCTCTTCTCTTCC+AGG 0.220937 2_3:+47640170 None:intergenic
TAGTGGATTGGGAAGATTAA+AGG 0.272114 2_3:-47640487 Msa0295240:intron
GTGATAGGTTCCATATGATA+TGG 0.300702 2_3:+47646628 None:intergenic
TGTGATCAAATAAGCATATA+TGG 0.320912 2_3:+47640225 None:intergenic
GGTATCTTGGTGCAAGTTAC+AGG 0.327096 2_3:+47641503 None:intergenic
CAGTTTGAACCTTGCTCTCA+TGG 0.330450 2_3:-47643799 Msa0295240:CDS
GGATCACTTGTCAGTTCATC+TGG 0.343082 2_3:+47643956 None:intergenic
TGCTCTCATGGTGACTTCCT+TGG 0.363969 2_3:-47643787 Msa0295240:CDS
GAACAGATTTCAATGTATAA+TGG 0.368359 2_3:-47640151 Msa0295240:three_prime_UTR
CCTTGTTACCCAGGGAGAAC+AGG 0.372665 2_3:-47642929 Msa0295240:intron
ATGTATTGCTCAAGGGAGTT+GGG 0.373857 2_3:-47644489 Msa0295240:CDS
AAGTGATCCAGATGTTATTT+CGG 0.379461 2_3:-47643942 Msa0295240:CDS
CTTGTATCAGTTAGTGGATT+GGG 0.386024 2_3:-47640498 Msa0295240:CDS
ATCACATTACATTGCTTATG+TGG 0.393777 2_3:-47640208 Msa0295240:three_prime_UTR
AGTTGGGGATATTATATTGC+AGG 0.396380 2_3:-47643731 Msa0295240:intron
CGAAGCTAGTTGACATGATC+AGG 0.398418 2_3:-47641280 Msa0295240:intron
TCATAATCAAGAGAAATTAA+TGG 0.400281 2_3:+47641482 None:intergenic
GAATTGTCAGGGAGAAAGTT+GGG 0.409360 2_3:-47643747 Msa0295240:CDS
AAGAGAAATTAATGGTATCT+TGG 0.414759 2_3:+47641490 None:intergenic
TCTTGCGTCAGCACTGGATA+AGG 0.420014 2_3:-47642869 Msa0295240:intron
GGAGATCTTGTATCAGTTAG+TGG 0.420203 2_3:-47640504 Msa0295240:CDS
GCTGCAACTACCACTAGCTT+TGG 0.424137 2_3:-47646591 Msa0295240:CDS
CTCTTTAGGCTGAACGGTGC+CGG 0.424686 2_3:-47643994 Msa0295240:intron
CTTGGCTCAATTCTTGGTAC+AGG 0.426476 2_3:-47643769 Msa0295240:CDS
GATGTATTGCTCAAGGGAGT+TGG 0.427872 2_3:-47644490 Msa0295240:CDS
AGGAGAGAAGATGAGAGGTA+AGG 0.433483 2_3:+47646472 None:intergenic
GAGGGGTTAGAAAATTTGTA+TGG 0.436886 2_3:+47644180 None:intergenic
GAAGTAAACACCACAAAGAA+AGG 0.438769 2_3:-47640351 Msa0295240:CDS
CTCAATGCCGAAATAACATC+TGG 0.441188 2_3:+47643935 None:intergenic
TTCTCTTCCAGGTTTGAACT+TGG 0.443257 2_3:+47640181 None:intergenic
AAAAGAATCTATGCAAGTAT+TGG 0.445890 2_3:-47644150 Msa0295240:CDS
CATGAGAGCAAGGTTCAAAC+TGG 0.449126 2_3:+47643800 None:intergenic
CCATGGCGAATATGAGTGAT+AGG 0.450189 2_3:+47646613 None:intergenic
GTAACCTGAAGAAGTGGAAA+AGG 0.453594 2_3:+47646452 None:intergenic
TGGATCCCAATTACTACAAA+AGG 0.454338 2_3:-47640543 Msa0295240:CDS
ATGGCAATGTACGTATCAAC+TGG 0.455317 2_3:-47640563 Msa0295240:CDS
TTCTTGGTACAGGAATTGTC+AGG 0.461050 2_3:-47643759 Msa0295240:CDS
ACACACATACCCATATCATA+TGG 0.465023 2_3:-47646638 Msa0295240:five_prime_UTR
CTGGATGTCCAACAGAAATC+CGG 0.476765 2_3:+47643975 None:intergenic
AGAATTTCTTGCGTCAGCAC+TGG 0.477119 2_3:-47642875 Msa0295240:CDS
GAACGGTGCCGGATTTCTGT+TGG 0.493515 2_3:-47643983 Msa0295240:CDS
TAGAGAGTAACCTGAAGAAG+TGG 0.494138 2_3:+47646446 None:intergenic
TCTTGTATCAGTTAGTGGAT+TGG 0.495279 2_3:-47640499 Msa0295240:CDS
GTTGATGCAGTAGCCAGTGC+AGG 0.500484 2_3:-47641320 Msa0295240:CDS
AAATAATTATTGACAATACA+AGG 0.502265 2_3:+47640035 None:intergenic
ATTAGCGGACATTAAAGCAT+TGG 0.502673 2_3:-47644123 Msa0295240:CDS
AATAATTATTTGAATTCCTG+TGG 0.517980 2_3:-47640023 Msa0295240:three_prime_UTR
GGAGAGAAGATGAGAGGTAA+GGG 0.518934 2_3:+47646473 None:intergenic
GCAAGAAATTCTACAAGCTC+TGG 0.522573 2_3:+47642886 None:intergenic
GGACATTTAAATAATAAAAG+AGG 0.526656 2_3:+47640246 None:intergenic
TGAAATCTTAAATCCTGCAC+TGG 0.527319 2_3:+47641307 None:intergenic
GGAATTGTCAGGGAGAAAGT+TGG 0.527589 2_3:-47643748 Msa0295240:CDS
TGATAGGTTCCATATGATAT+GGG 0.532452 2_3:+47646629 None:intergenic
CCACTAGCTTTGGAACTGCT+TGG 0.535075 2_3:-47646581 Msa0295240:CDS
CTCTTGATTATGAACCGCCA+AGG 0.539330 2_3:-47641472 Msa0295240:intron
GGGCCAAGATGTTACCTTGG+CGG 0.539528 2_3:+47641458 None:intergenic
CAGATGTTATTTCGGCATTG+AGG 0.539649 2_3:-47643934 Msa0295240:intron
GACATTAAAGCATTGGCTCA+AGG 0.555546 2_3:-47644116 Msa0295240:CDS
TGGAATACCAAGTTCAAACC+TGG 0.561544 2_3:-47640188 Msa0295240:three_prime_UTR
AGAGGTTGTTAGCATTGTTG+CGG 0.563507 2_3:+47646508 None:intergenic
AGAAGTTGATGTATTGCTCA+AGG 0.564298 2_3:-47644497 Msa0295240:CDS
CTTGTTACCCAGGGAGAACA+GGG 0.565414 2_3:-47642928 Msa0295240:intron
GCTAGTGGTAGTTGCAGCCA+TGG 0.567257 2_3:+47646596 None:intergenic
AAGATCTCCACTCTTGATTG+TGG 0.570795 2_3:+47640518 None:intergenic
GGAAAAGGAGAGAAGATGAG+AGG 0.603841 2_3:+47646467 None:intergenic
TATATGCTCTTTAGGCTGAA+CGG 0.610234 2_3:-47644000 Msa0295240:intron
TGTATTGCTCAAGGGAGTTG+GGG 0.611297 2_3:-47644488 Msa0295240:CDS
AGGAAGTCACCATGAGAGCA+AGG 0.611523 2_3:+47643790 None:intergenic
AAAGAAAGGAAAATTTGCAG+TGG 0.618269 2_3:-47640337 Msa0295240:CDS
GGCTCAAGGAGGTTATCCAC+AGG 0.618562 2_3:-47644102 Msa0295240:intron
TAAGGGTCCTTTGAAAAGAG+AGG 0.622157 2_3:+47646490 None:intergenic
GAAGTTGATGTATTGCTCAA+GGG 0.624002 2_3:-47644496 Msa0295240:CDS
AAAGGAACCACAATCAAGAG+TGG 0.627963 2_3:-47640525 Msa0295240:CDS
TCTTGGTACAGGAATTGTCA+GGG 0.628354 2_3:-47643758 Msa0295240:CDS
CAAACAGAGGAAATGTCCAC+AGG 0.628886 2_3:+47640007 None:intergenic
CCTATCACTCATATTCGCCA+TGG 0.633026 2_3:-47646613 Msa0295240:exon
CCAAGCAGTTCCAAAGCTAG+TGG 0.639165 2_3:+47646581 None:intergenic
AATTGTCAGGGAGAAAGTTG+GGG 0.647375 2_3:-47643746 Msa0295240:CDS
CTGTACCAAGAATTGAGCCA+AGG 0.655995 2_3:+47643770 None:intergenic
TACACTCAAGTACAGTCCTG+TGG 0.662185 2_3:-47640085 Msa0295240:three_prime_UTR
AGTGAAGCATGTTCTTGAGA+TGG 0.664704 2_3:-47644446 Msa0295240:intron
CATTATTGAGGAACAAACAG+AGG 0.672735 2_3:+47639994 None:intergenic
ATTAAAGCATTGGCTCAAGG+AGG 0.676251 2_3:-47644113 Msa0295240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACAAAAAAAAAAATAGAAA+TGG + chr2_3:47640235-47640254 None:intergenic 10.0%
!!! ATTTCTATTTTTTTTTTTGT+AGG - chr2_3:47640234-47640253 Msa0295240:three_prime_UTR 10.0%
!!! CTTTTTTATAAAATAAATTG+TGG - chr2_3:47640304-47640323 Msa0295240:exon 10.0%
!! ACTGAAAATAAATTAAATAA+TGG + chr2_3:47640358-47640377 None:intergenic 10.0%
!! AAAATAAAATAATTTAATCC+AGG + chr2_3:47643464-47643483 None:intergenic 10.0%
!! TAGCATAAAATGATATATAA+TGG + chr2_3:47642360-47642379 None:intergenic 15.0%
!! TTATCTAAATATACTATGAA+AGG + chr2_3:47642795-47642814 None:intergenic 15.0%
!!! TGATATTTTATATACAACAA+AGG - chr2_3:47643056-47643075 Msa0295240:intron 15.0%
!! ATTTAGTAATATTAATTCAG+AGG + chr2_3:47644012-47644031 None:intergenic 15.0%
!!! ATAAAAGAACTTTTTACTAT+AGG - chr2_3:47644123-47644142 Msa0295240:CDS 15.0%
!! TTGAAATTGTGTTTATAAAT+GGG - chr2_3:47645024-47645043 Msa0295240:intron 15.0%
!!! ATGTTTAATTTATTTCATTC+TGG - chr2_3:47646260-47646279 Msa0295240:intron 15.0%
!! AAATAATTATTGACAATACA+AGG + chr2_3:47646613-47646632 None:intergenic 15.0%
!!! TTTTGAACAATTGAACATAA+TGG + chr2_3:47640279-47640298 None:intergenic 20.0%
!!! TTGTAGTAAAGTTTAAAACT+TGG - chr2_3:47640457-47640476 Msa0295240:intron 20.0%
!! AGTTTCACATTGTTTATTAT+TGG - chr2_3:47641636-47641655 Msa0295240:intron 20.0%
!! TATCTAAATCAAAAACCTTA+AGG + chr2_3:47641711-47641730 None:intergenic 20.0%
!!! TTAAGGTTTTTGATTTAGAT+AGG - chr2_3:47641710-47641729 Msa0295240:intron 20.0%
!!! TAAGGTTTTTGATTTAGATA+GGG - chr2_3:47641711-47641730 Msa0295240:intron 20.0%
!!! TCTTAGCTAAATCATTATTT+TGG - chr2_3:47642038-47642057 Msa0295240:intron 20.0%
!! ACATAATATATATGCTCTTT+AGG - chr2_3:47642637-47642656 Msa0295240:intron 20.0%
!!! TTTTAGGTAAAAGTAGTAAA+TGG + chr2_3:47642956-47642975 None:intergenic 20.0%
!! CTCAAAAAATGTTTATAAGT+GGG - chr2_3:47643323-47643342 Msa0295240:intron 20.0%
!! TGGTCAAATAAAACATATAA+TGG + chr2_3:47643490-47643509 None:intergenic 20.0%
!!! TATGTTTTATTTGACCATTT+TGG - chr2_3:47643493-47643512 Msa0295240:intron 20.0%
!! TCTCTATATCTTTCTTAATT+GGG + chr2_3:47643570-47643589 None:intergenic 20.0%
!! ATCTCTATATCTTTCTTAAT+TGG + chr2_3:47643571-47643590 None:intergenic 20.0%
!! AAAGTTATACAAAATACGAA+GGG + chr2_3:47643686-47643705 None:intergenic 20.0%
!! GATACGTAAATTTATTAAGA+AGG + chr2_3:47643835-47643854 None:intergenic 20.0%
!! AATTTACGTATCAAAACAAA+AGG - chr2_3:47643843-47643862 Msa0295240:intron 20.0%
!!! TAGGAATACAATCTTTTTAT+TGG - chr2_3:47644366-47644385 Msa0295240:intron 20.0%
!! TAGACTAATGTTAGTATATT+AGG - chr2_3:47644390-47644409 Msa0295240:intron 20.0%
!! TTTATAATTGTGTTCCTAAA+GGG + chr2_3:47644496-47644515 None:intergenic 20.0%
!!! TTTTATAATTGTGTTCCTAA+AGG + chr2_3:47644497-47644516 None:intergenic 20.0%
!! TATTGATCAAATCATTGAAA+AGG - chr2_3:47644816-47644835 Msa0295240:intron 20.0%
!! CTTGAAATTGTGTTTATAAA+TGG - chr2_3:47645023-47645042 Msa0295240:intron 20.0%
!! TCATAATCAAGAGAAATTAA+TGG + chr2_3:47645166-47645185 None:intergenic 20.0%
!! CATCATATATACACAAATTA+GGG + chr2_3:47645399-47645418 None:intergenic 20.0%
!! ACATCATATATACACAAATT+AGG + chr2_3:47645400-47645419 None:intergenic 20.0%
!! ACATAACATAAGTCAATATA+TGG - chr2_3:47645550-47645569 Msa0295240:intron 20.0%
!! CATTAAATTTATGCTCTATT+TGG + chr2_3:47645814-47645833 None:intergenic 20.0%
!! GGACATTTAAATAATAAAAG+AGG + chr2_3:47646402-47646421 None:intergenic 20.0%
!! AATAATTATTTGAATTCCTG+TGG - chr2_3:47646622-47646641 Msa0295240:five_prime_UTR 20.0%
!!! TTTTGTAGGTTGATTCTATT+TGG - chr2_3:47640248-47640267 Msa0295240:three_prime_UTR 25.0%
! TGATGAATATATTGCTGAAT+TGG - chr2_3:47640416-47640435 Msa0295240:intron 25.0%
!!! TTTTGATTTTAGGGTTTGTT+TGG + chr2_3:47640866-47640885 None:intergenic 25.0%
!!! AGCACTTCATTTTGATTTTA+GGG + chr2_3:47640875-47640894 None:intergenic 25.0%
!!! AAGCACTTCATTTTGATTTT+AGG + chr2_3:47640876-47640895 None:intergenic 25.0%
! TTCAAACTTAAGTTTCTACT+TGG + chr2_3:47640947-47640966 None:intergenic 25.0%
!! TTCACTTTCCTAAAGTATTA+TGG - chr2_3:47641084-47641103 Msa0295240:intron 25.0%
! TTATATGGAATGAGAATCAA+TGG - chr2_3:47641223-47641242 Msa0295240:intron 25.0%
! TAGTAAGAAAATGGTTAAGA+TGG - chr2_3:47641445-47641464 Msa0295240:intron 25.0%
! AGTAAGAAAATGGTTAAGAT+GGG - chr2_3:47641446-47641465 Msa0295240:intron 25.0%
! ACATTGTTTATTATTGGACA+AGG - chr2_3:47641642-47641661 Msa0295240:intron 25.0%
! TGATTTATCCTTTGATCATT+TGG - chr2_3:47641928-47641947 Msa0295240:intron 25.0%
! AAGCATTAAAAATGTGAAAC+TGG + chr2_3:47642079-47642098 None:intergenic 25.0%
! ATGAAATTTGTATGGATCAA+GGG + chr2_3:47642243-47642262 None:intergenic 25.0%
! AATGAAATTTGTATGGATCA+AGG + chr2_3:47642244-47642263 None:intergenic 25.0%
!! AGTCTAGAATGAAATTTGTA+TGG + chr2_3:47642251-47642270 None:intergenic 25.0%
! AATGATATATAATGGCTCAA+AGG + chr2_3:47642352-47642371 None:intergenic 25.0%
! AAAAGAATCTATGCAAGTAT+TGG - chr2_3:47642495-47642514 Msa0295240:intron 25.0%
!!! CCACTTATAAACATTTTTTG+AGG + chr2_3:47643325-47643344 None:intergenic 25.0%
! CCTCAAAAAATGTTTATAAG+TGG - chr2_3:47643322-47643341 Msa0295240:intron 25.0%
! CAAAGTTATACAAAATACGA+AGG + chr2_3:47643687-47643706 None:intergenic 25.0%
!!! GCAGGAATTTTTTAAAATCT+CGG - chr2_3:47643939-47643958 Msa0295240:CDS 25.0%
! TACTAAATTTCGTAGTTTGA+AGG - chr2_3:47644024-47644043 Msa0295240:intron 25.0%
!! TTTTACTATAGGATCTTAGT+AGG - chr2_3:47644134-47644153 Msa0295240:CDS 25.0%
!! GAAACGTTATTCAAGTTTAA+AGG - chr2_3:47644200-47644219 Msa0295240:CDS 25.0%
! TTAAAGGAAATTATACCGTA+TGG - chr2_3:47644216-47644235 Msa0295240:intron 25.0%
! AAACATGACAAGATAGAATT+AGG - chr2_3:47644347-47644366 Msa0295240:intron 25.0%
! TTATAATTGTGTTCCTAAAG+GGG + chr2_3:47644495-47644514 None:intergenic 25.0%
! CACAATTATAAAACGAAATG+CGG - chr2_3:47644504-47644523 Msa0295240:CDS 25.0%
!! ATCCTTTAACTTAAGTGATT+TGG - chr2_3:47644699-47644718 Msa0295240:intron 25.0%
!! TCCTTTAACTTAAGTGATTT+GGG - chr2_3:47644700-47644719 Msa0295240:intron 25.0%
! AGTAAAGAAAGTAGATCATA+TGG - chr2_3:47644752-47644771 Msa0295240:intron 25.0%
! GTAAAGAAAGTAGATCATAT+GGG - chr2_3:47644753-47644772 Msa0295240:intron 25.0%
! TTCAATTGTTAAAGCCTTAA+AGG - chr2_3:47644782-47644801 Msa0295240:intron 25.0%
! ATAGTTCTTATTCACCTTTA+AGG + chr2_3:47644799-47644818 None:intergenic 25.0%
! GAAAAGGATTCAGATTTAAA+TGG - chr2_3:47644832-47644851 Msa0295240:intron 25.0%
! GAAAAAAAAAACTTTCCATC+AGG + chr2_3:47644922-47644941 None:intergenic 25.0%
!!! TTTTTTTCTTTTTCTGTGTG+CGG - chr2_3:47644934-47644953 Msa0295240:intron 25.0%
! AAGTCATATCACATATAATG+TGG + chr2_3:47645006-47645025 None:intergenic 25.0%
! AAGAGAAATTAATGGTATCT+TGG + chr2_3:47645158-47645177 None:intergenic 25.0%
!!! TTGAATTCTTGATTTGCTTA+TGG - chr2_3:47645433-47645452 Msa0295240:intron 25.0%
! AAGTTATAAAACTTATGAGC+TGG + chr2_3:47645683-47645702 None:intergenic 25.0%
! AAATAAGTGCAAGAAAATCA+AGG + chr2_3:47645886-47645905 None:intergenic 25.0%
!! CTCTTTTGCATGAAATATTT+TGG - chr2_3:47646011-47646030 Msa0295240:intron 25.0%
! ACTTGTAAAAGCTTAAAAGA+AGG - chr2_3:47646183-47646202 Msa0295240:intron 25.0%
! TACTCAAAACAAAAAGAAAG+TGG + chr2_3:47646240-47646259 None:intergenic 25.0%
! TGTGATCAAATAAGCATATA+TGG + chr2_3:47646423-47646442 None:intergenic 25.0%
! GAACAGATTTCAATGTATAA+TGG - chr2_3:47646494-47646513 Msa0295240:CDS 25.0%
TGATAGGTTCCATATGATAT+GGG + chr2_3:47640019-47640038 None:intergenic 30.0%
ATATTCATCATCACCATGTT+GGG + chr2_3:47640406-47640425 None:intergenic 30.0%
TATATTCATCATCACCATGT+TGG + chr2_3:47640407-47640426 None:intergenic 30.0%
CTACAATTTATGAAACCCTT+TGG + chr2_3:47640443-47640462 None:intergenic 30.0%
GGTCATGAACATATCATAAA+CGG - chr2_3:47640773-47640792 Msa0295240:intron 30.0%
AACTTAAGTTTCTACTTGGA+TGG + chr2_3:47640943-47640962 None:intergenic 30.0%
TGTGTTATATTACAGTCAGT+GGG + chr2_3:47640976-47640995 None:intergenic 30.0%
TTGTGTTATATTACAGTCAG+TGG + chr2_3:47640977-47640996 None:intergenic 30.0%
GAATGAATGTAATCACAAGT+CGG + chr2_3:47641067-47641086 None:intergenic 30.0%
AGTAGACACCATAATACTTT+AGG + chr2_3:47641095-47641114 None:intergenic 30.0%
AAAGAAATCATGATTGTGAG+CGG - chr2_3:47641269-47641288 Msa0295240:intron 30.0%
! TTGAAAGTATGTCTGATAGT+TGG - chr2_3:47641404-47641423 Msa0295240:intron 30.0%
ACAACGAAACTAATACCTTA+AGG - chr2_3:47641693-47641712 Msa0295240:intron 30.0%
TGTAATGAAGAACTTACCAA+GGG + chr2_3:47641759-47641778 None:intergenic 30.0%
ATGTAATGAAGAACTTACCA+AGG + chr2_3:47641760-47641779 None:intergenic 30.0%
ATAATAACTCTTGACGATAC+AGG + chr2_3:47641794-47641813 None:intergenic 30.0%
GTATCGTCAAGAGTTATTAT+TGG - chr2_3:47641794-47641813 Msa0295240:intron 30.0%
TCAGTAGTAATGTTTATGAC+TGG - chr2_3:47641848-47641867 Msa0295240:intron 30.0%
ATCAAAATTGCTCAGTAGTT+GGG + chr2_3:47641909-47641928 None:intergenic 30.0%
CATGTAGAAAAAAAAGTTCC+AGG + chr2_3:47642282-47642301 None:intergenic 30.0%
!!! CTGGAACTTTTTTTTCTACA+TGG - chr2_3:47642280-47642299 Msa0295240:intron 30.0%
TCAACATTTGATGTATGGTT+CGG - chr2_3:47642326-47642345 Msa0295240:intron 30.0%
!! GCAAGTATTGGAAAAATTAG+CGG - chr2_3:47642507-47642526 Msa0295240:intron 30.0%
ACTTTACTGTATCAAGGTAA+TGG + chr2_3:47642593-47642612 None:intergenic 30.0%
! AAGTGATCCAGATGTTATTT+CGG - chr2_3:47642703-47642722 Msa0295240:intron 30.0%
GCATCAACAATTTCTGTATT+GGG + chr2_3:47642763-47642782 None:intergenic 30.0%
AGCATCAACAATTTCTGTAT+TGG + chr2_3:47642764-47642783 None:intergenic 30.0%
!! ATATACTATGAAAGGCATCT+AGG + chr2_3:47642787-47642806 None:intergenic 30.0%
! ATTACTCTTTTCAGCATTAC+AGG - chr2_3:47642816-47642835 Msa0295240:intron 30.0%
! TTACTCTTTTCAGCATTACA+GGG - chr2_3:47642817-47642836 Msa0295240:intron 30.0%
! GGATCTTTTACTATATACAC+AGG + chr2_3:47643144-47643163 None:intergenic 30.0%
CAAAGTTAAATCATTGTGAC+TGG - chr2_3:47643271-47643290 Msa0295240:intron 30.0%
AGATATAGAGATTAATGAGC+TGG - chr2_3:47643579-47643598 Msa0295240:intron 30.0%
TATCACACTTTAAGTACCTT+GGG - chr2_3:47644077-47644096 Msa0295240:intron 30.0%
TATAATTGTGTTCCTAAAGG+GGG + chr2_3:47644494-47644513 None:intergenic 30.0%
! ACATGTTCTATCATCTTTTC+TGG + chr2_3:47644541-47644560 None:intergenic 30.0%
TCCCAAATCACTTAAGTTAA+AGG + chr2_3:47644704-47644723 None:intergenic 30.0%
! TTAAGTGATTTGGGAAAATG+TGG - chr2_3:47644709-47644728 Msa0295240:intron 30.0%
CTTAAGATTTGAATTGAGTG+TGG + chr2_3:47645071-47645090 None:intergenic 30.0%
TTTATGTCAACTTCAAACCA+GGG + chr2_3:47645210-47645229 None:intergenic 30.0%
! TTTTATGTCAACTTCAAACC+AGG + chr2_3:47645211-47645230 None:intergenic 30.0%
TTGTGTATATATGATGTCTG+TGG - chr2_3:47645403-47645422 Msa0295240:intron 30.0%
ATTCAGAAAACAAGTTCTCA+AGG + chr2_3:47645474-47645493 None:intergenic 30.0%
CATAAGTCAATATATGGATG+AGG - chr2_3:47645556-47645575 Msa0295240:intron 30.0%
TATAAGCTGAAAACAGCTTA+TGG + chr2_3:47645630-47645649 None:intergenic 30.0%
! TTGTTACCCTTTGGTTATTT+TGG - chr2_3:47645947-47645966 Msa0295240:intron 30.0%
CATATGCCAAAATAACCAAA+GGG + chr2_3:47645956-47645975 None:intergenic 30.0%
TCATATGCCAAAATAACCAA+AGG + chr2_3:47645957-47645976 None:intergenic 30.0%
! TGGTTCCTTTTGTAGTAATT+GGG + chr2_3:47646110-47646129 None:intergenic 30.0%
! TGCAAATTTTCCTTTCTTTG+TGG + chr2_3:47646307-47646326 None:intergenic 30.0%
AAAGAAAGGAAAATTTGCAG+TGG - chr2_3:47646308-47646327 Msa0295240:intron 30.0%
ATCACATTACATTGCTTATG+TGG - chr2_3:47646437-47646456 Msa0295240:intron 30.0%
TGAAATGCAAAAATATCCAC+AGG + chr2_3:47646579-47646598 None:intergenic 30.0%
!! TGTGGATATTTTTGCATTTC+AGG - chr2_3:47646578-47646597 Msa0295240:CDS 30.0%
GTGATAGGTTCCATATGATA+TGG + chr2_3:47640020-47640039 None:intergenic 35.0%
! CTAACAACCTCTCTTTTCAA+AGG - chr2_3:47640148-47640167 Msa0295240:three_prime_UTR 35.0%
ATATTGCTGAATTGGACCAA+AGG - chr2_3:47640424-47640443 Msa0295240:intron 35.0%
TATTGCTGAATTGGACCAAA+GGG - chr2_3:47640425-47640444 Msa0295240:intron 35.0%
TACATGTGAAGCAATAGTGA+AGG - chr2_3:47640513-47640532 Msa0295240:CDS 35.0%
ACATGTGAAGCAATAGTGAA+GGG - chr2_3:47640514-47640533 Msa0295240:CDS 35.0%
TTTCACTTAGCTATCTGAGA+AGG - chr2_3:47640727-47640746 Msa0295240:intron 35.0%
! TAGCTATCTGAGAAGGTATA+TGG - chr2_3:47640734-47640753 Msa0295240:intron 35.0%
TTATATTACAGTCAGTGGGA+TGG + chr2_3:47640972-47640991 None:intergenic 35.0%
! CTTCAGACTGAAAGTGTATT+TGG - chr2_3:47641021-47641040 Msa0295240:intron 35.0%
ACAGACATCAAACAATGACA+CGG + chr2_3:47641145-47641164 None:intergenic 35.0%
TCATTGTTTGATGTCTGTGT+TGG - chr2_3:47641147-47641166 Msa0295240:intron 35.0%
ATGTCATGTATTCCCTCATA+TGG + chr2_3:47641174-47641193 None:intergenic 35.0%
TATGAGGGAATACATGACAT+TGG - chr2_3:47641174-47641193 Msa0295240:intron 35.0%
ATGAGGGAATACATGACATT+GGG - chr2_3:47641175-47641194 Msa0295240:intron 35.0%
GCAAACTAAATGGTGAAAAG+AGG - chr2_3:47641361-47641380 Msa0295240:intron 35.0%
GTGAAAAGAGGTAACATGTA+TGG - chr2_3:47641373-47641392 Msa0295240:intron 35.0%
! TTTTCTTACTACTCGTCACT+TGG + chr2_3:47641436-47641455 None:intergenic 35.0%
AGTGACGAGTAGTAAGAAAA+TGG - chr2_3:47641436-47641455 Msa0295240:intron 35.0%
GTTGTCCTTTCCATTCTATA+CGG + chr2_3:47641678-47641697 None:intergenic 35.0%
CATCAAAATTGCTCAGTAGT+TGG + chr2_3:47641910-47641929 None:intergenic 35.0%
ATATATCTTCTCCACAACCA+CGG + chr2_3:47641975-47641994 None:intergenic 35.0%
!! AGAAGTTGATGTATTGCTCA+AGG - chr2_3:47642148-47642167 Msa0295240:intron 35.0%
!! GAAGTTGATGTATTGCTCAA+GGG - chr2_3:47642149-47642168 Msa0295240:intron 35.0%
CATACATCAAATGTTGACAC+TGG + chr2_3:47642323-47642342 None:intergenic 35.0%
CAGTGTCAACATTTGATGTA+TGG - chr2_3:47642321-47642340 Msa0295240:intron 35.0%
ACATCATTTGATCCCTAACT+TGG - chr2_3:47642384-47642403 Msa0295240:intron 35.0%
GAGGGGTTAGAAAATTTGTA+TGG + chr2_3:47642468-47642487 None:intergenic 35.0%
!! TAGATTCTTTTAGCACTGGA+GGG + chr2_3:47642486-47642505 None:intergenic 35.0%
!! ATAGATTCTTTTAGCACTGG+AGG + chr2_3:47642487-47642506 None:intergenic 35.0%
! TGCATAGATTCTTTTAGCAC+TGG + chr2_3:47642490-47642509 None:intergenic 35.0%
! ATTAGCGGACATTAAAGCAT+TGG - chr2_3:47642522-47642541 Msa0295240:intron 35.0%
TATATCTAGATGGTTACCTG+TGG + chr2_3:47642562-47642581 None:intergenic 35.0%
ACAGGTAACCATCTAGATAT+AGG - chr2_3:47642561-47642580 Msa0295240:intron 35.0%
GCAAACACTTTACTGTATCA+AGG + chr2_3:47642599-47642618 None:intergenic 35.0%
TATATGCTCTTTAGGCTGAA+CGG - chr2_3:47642645-47642664 Msa0295240:intron 35.0%
! TGTATTGGGCTTGGAAATTT+TGG + chr2_3:47642749-47642768 None:intergenic 35.0%
AACAATTTCTGTATTGGGCT+TGG + chr2_3:47642758-47642777 None:intergenic 35.0%
AGTTGGGGATATTATATTGC+AGG - chr2_3:47642914-47642933 Msa0295240:CDS 35.0%
GTCTTCACAAGGAATATCTA+TGG - chr2_3:47643088-47643107 Msa0295240:intron 35.0%
GGCTGTTTAATCAACAACTA+TGG - chr2_3:47643109-47643128 Msa0295240:intron 35.0%
GATATGCACAACTTTAGACA+GGG + chr2_3:47643165-47643184 None:intergenic 35.0%
AGATATGCACAACTTTAGAC+AGG + chr2_3:47643166-47643185 None:intergenic 35.0%
!!! TGGTTTTGTTGGGTTAAGTT+AGG - chr2_3:47643368-47643387 Msa0295240:intron 35.0%
!!! GGTTTTGTTGGGTTAAGTTA+GGG - chr2_3:47643369-47643388 Msa0295240:intron 35.0%
!! TTAAGTTGAGGCTAAACCAA+TGG + chr2_3:47643426-47643445 None:intergenic 35.0%
TAGCCTCAACTTAAAGTTTC+TGG - chr2_3:47643432-47643451 Msa0295240:intron 35.0%
!! TGTCCAGAAACTTTAAGTTG+AGG + chr2_3:47643438-47643457 None:intergenic 35.0%
ATTTGGAAAGACAGCCAAAA+TGG + chr2_3:47643510-47643529 None:intergenic 35.0%
AGAAGGTAGTCTGTAAAATG+AGG + chr2_3:47643818-47643837 None:intergenic 35.0%
AGGAAATGATTGTGTAATCG+TGG - chr2_3:47643863-47643882 Msa0295240:intron 35.0%
CGTAGTTTGAAGGTGAAAAT+TGG - chr2_3:47644034-47644053 Msa0295240:intron 35.0%
GTATCACACTTTAAGTACCT+TGG - chr2_3:47644076-47644095 Msa0295240:intron 35.0%
!! TACTTTTTATGACAGACCCA+AGG + chr2_3:47644096-47644115 None:intergenic 35.0%
TGGGTCTGTCATAAAAAGTA+CGG - chr2_3:47644096-47644115 Msa0295240:intron 35.0%
ACTATAGGATCTTAGTAGGA+TGG - chr2_3:47644138-47644157 Msa0295240:CDS 35.0%
TCTTAGTAGGATGGATAAAC+TGG - chr2_3:47644147-47644166 Msa0295240:CDS 35.0%
ATACAGCATTGCAAGTCTTA+TGG + chr2_3:47644242-47644261 None:intergenic 35.0%
! TGTGTATTTTTCCTTCACCA+AGG - chr2_3:47644415-47644434 Msa0295240:intron 35.0%
! TTTTTCCTTCACCAAGGTTT+TGG - chr2_3:47644421-47644440 Msa0295240:intron 35.0%
GAGTTAAATGACCAAAACCT+TGG + chr2_3:47644435-47644454 None:intergenic 35.0%
AGAACATGTCTTAGATAGTC+TGG - chr2_3:47644552-47644571 Msa0295240:intron 35.0%
TTATGATGTGTCAGTGAAAG+TGG - chr2_3:47644597-47644616 Msa0295240:intron 35.0%
GAATTCATTAGAGAAAGACG+TGG - chr2_3:47644648-47644667 Msa0295240:intron 35.0%
AAGAAAGTAGATCATATGGG+AGG - chr2_3:47644756-47644775 Msa0295240:intron 35.0%
ATATAGCAAACTTCACCTGA+TGG - chr2_3:47644904-47644923 Msa0295240:intron 35.0%
CGCATTCTTCTTATTCATTC+AGG - chr2_3:47645108-47645127 Msa0295240:intron 35.0%
TGAAATCTTAAATCCTGCAC+TGG + chr2_3:47645341-47645360 None:intergenic 35.0%
ATGGATGAGGCTATTTGAAT+TGG - chr2_3:47645569-47645588 Msa0295240:intron 35.0%
CTTATATTCATAAGCTCTCC+AGG - chr2_3:47645644-47645663 Msa0295240:intron 35.0%
TAAGTGCAAGAAAATCAAGG+AGG + chr2_3:47645883-47645902 None:intergenic 35.0%
AGCATAGAATTGTTACCCTT+TGG - chr2_3:47645938-47645957 Msa0295240:intron 35.0%
ACATATTGTGCTCATAGCAA+TGG - chr2_3:47646063-47646082 Msa0295240:intron 35.0%
TGGATCCCAATTACTACAAA+AGG - chr2_3:47646102-47646121 Msa0295240:intron 35.0%
! GTGGTTCCTTTTGTAGTAAT+TGG + chr2_3:47646111-47646130 None:intergenic 35.0%
! TCTTGTATCAGTTAGTGGAT+TGG - chr2_3:47646146-47646165 Msa0295240:intron 35.0%
!! CTTGTATCAGTTAGTGGATT+GGG - chr2_3:47646147-47646166 Msa0295240:intron 35.0%
!! TAGTGGATTGGGAAGATTAA+AGG - chr2_3:47646158-47646177 Msa0295240:intron 35.0%
TATTTCATTCTGGTCCAGAT+AGG - chr2_3:47646270-47646289 Msa0295240:intron 35.0%
GAAGTAAACACCACAAAGAA+AGG - chr2_3:47646294-47646313 Msa0295240:intron 35.0%
AGAGGTTGTTAGCATTGTTG+CGG + chr2_3:47640140-47640159 None:intergenic 40.0%
! TAAGGGTCCTTTGAAAAGAG+AGG + chr2_3:47640158-47640177 None:intergenic 40.0%
GTAACCTGAAGAAGTGGAAA+AGG + chr2_3:47640196-47640215 None:intergenic 40.0%
TAGAGAGTAACCTGAAGAAG+TGG + chr2_3:47640202-47640221 None:intergenic 40.0%
TGTATTTCTCCAACCCAACA+TGG - chr2_3:47640390-47640409 Msa0295240:intron 40.0%
CATGTGAAGCAATAGTGAAG+GGG - chr2_3:47640515-47640534 Msa0295240:CDS 40.0%
! AGCAATAGTGAAGGGGATTT+TGG - chr2_3:47640522-47640541 Msa0295240:CDS 40.0%
GAAACTTTACCCACACACTA+AGG - chr2_3:47640595-47640614 Msa0295240:intron 40.0%
TATGGAGATAAGCTGAAAGC+AGG - chr2_3:47640752-47640771 Msa0295240:intron 40.0%
CTTGTGAGACTATTTGACAC+AGG + chr2_3:47640808-47640827 None:intergenic 40.0%
TTCTACTTGGATGGAAACAC+AGG + chr2_3:47640934-47640953 None:intergenic 40.0%
ATCAAACAATGACACGGACA+CGG + chr2_3:47641139-47641158 None:intergenic 40.0%
TGAGGGAATACATGACATTG+GGG - chr2_3:47641176-47641195 Msa0295240:intron 40.0%
GAATACATGACATTGGGGTT+GGG - chr2_3:47641181-47641200 Msa0295240:intron 40.0%
AATACATGACATTGGGGTTG+GGG - chr2_3:47641182-47641201 Msa0295240:intron 40.0%
! CATGTTTTCACGGGCTTATA+TGG - chr2_3:47641208-47641227 Msa0295240:intron 40.0%
ATGATGAGTGGTAACATGTG+TGG - chr2_3:47641331-47641350 Msa0295240:CDS 40.0%
TGGAGATGTGGCAAACTAAA+TGG - chr2_3:47641351-47641370 Msa0295240:CDS 40.0%
CAGACATACTTTCAAGAGAC+TGG + chr2_3:47641399-47641418 None:intergenic 40.0%
AGTATGTCTGATAGTTGGCT+TGG - chr2_3:47641409-47641428 Msa0295240:intron 40.0%
GGTTAAGATGGGTCTTGATT+TGG - chr2_3:47641457-47641476 Msa0295240:intron 40.0%
GAAGAATGCCAAAGTATGCT+TGG - chr2_3:47641481-47641500 Msa0295240:CDS 40.0%
GTGTTAAAGACTTACACTCG+AGG - chr2_3:47641562-47641581 Msa0295240:intron 40.0%
ACTCGTCTGTTAGTGTTATG+TGG - chr2_3:47641600-47641619 Msa0295240:intron 40.0%
CTCGTCTGTTAGTGTTATGT+GGG - chr2_3:47641601-47641620 Msa0295240:intron 40.0%
TGAACGAAGACCGTATAGAA+TGG - chr2_3:47641665-47641684 Msa0295240:intron 40.0%
GAAGACCGTATAGAATGGAA+AGG - chr2_3:47641670-47641689 Msa0295240:intron 40.0%
!! AGAGTTATTATTGGTGCCAG+TGG - chr2_3:47641803-47641822 Msa0295240:intron 40.0%
AATTGCTCAGTAGTTGGGAA+GGG + chr2_3:47641904-47641923 None:intergenic 40.0%
AAATTGCTCAGTAGTTGGGA+AGG + chr2_3:47641905-47641924 None:intergenic 40.0%
AACGTCGACCAAATGATCAA+AGG + chr2_3:47641939-47641958 None:intergenic 40.0%
ATGTATTGCTCAAGGGAGTT+GGG - chr2_3:47642156-47642175 Msa0295240:intron 40.0%
AGTGAAGCATGTTCTTGAGA+TGG - chr2_3:47642199-47642218 Msa0295240:intron 40.0%
AATGGACGACAACCAAGTTA+GGG + chr2_3:47642399-47642418 None:intergenic 40.0%
AAATGGACGACAACCAAGTT+AGG + chr2_3:47642400-47642419 None:intergenic 40.0%
TAGCCTACAACGAAGTCAAA+TGG + chr2_3:47642417-47642436 None:intergenic 40.0%
!! AGATTCTTTTAGCACTGGAG+GGG + chr2_3:47642485-47642504 None:intergenic 40.0%
!! GACATTAAAGCATTGGCTCA+AGG - chr2_3:47642529-47642548 Msa0295240:intron 40.0%
!! ATTAAAGCATTGGCTCAAGG+AGG - chr2_3:47642532-47642551 Msa0295240:intron 40.0%
CTCAATGCCGAAATAACATC+TGG + chr2_3:47642713-47642732 None:intergenic 40.0%
!! CAGATGTTATTTCGGCATTG+AGG - chr2_3:47642711-47642730 Msa0295240:intron 40.0%
TTCTTGGTACAGGAATTGTC+AGG - chr2_3:47642886-47642905 Msa0295240:CDS 40.0%
TCTTGGTACAGGAATTGTCA+GGG - chr2_3:47642887-47642906 Msa0295240:CDS 40.0%
GAATTGTCAGGGAGAAAGTT+GGG - chr2_3:47642898-47642917 Msa0295240:CDS 40.0%
AATTGTCAGGGAGAAAGTTG+GGG - chr2_3:47642899-47642918 Msa0295240:CDS 40.0%
GGATCAGAAAAGTCTTCACA+AGG - chr2_3:47643077-47643096 Msa0295240:intron 40.0%
ATCAACAACTATGGCTGTCT+TGG - chr2_3:47643118-47643137 Msa0295240:intron 40.0%
AAAACCAGCTTGTAAGGTGA+GGG + chr2_3:47643355-47643374 None:intergenic 40.0%
!!! ACCTTACAAGCTGGTTTTGT+TGG - chr2_3:47643357-47643376 Msa0295240:intron 40.0%
!!! CCTTACAAGCTGGTTTTGTT+GGG - chr2_3:47643358-47643377 Msa0295240:intron 40.0%
CAACTATGTTGACGATCCAT+TGG - chr2_3:47643407-47643426 Msa0295240:intron 40.0%
! TAAAGTTTCTGGACATGACC+TGG - chr2_3:47643443-47643462 Msa0295240:intron 40.0%
ACTTTGTTACCTTGTTACCC+AGG - chr2_3:47643707-47643726 Msa0295240:intron 40.0%
CTTTGTTACCTTGTTACCCA+GGG - chr2_3:47643708-47643727 Msa0295240:intron 40.0%
GCAAGAAATTCTACAAGCTC+TGG + chr2_3:47643762-47643781 None:intergenic 40.0%
AATGTCGTCTCCAAATTTCG+AGG - chr2_3:47643914-47643933 Msa0295240:intron 40.0%
ATGTCGTCTCCAAATTTCGA+GGG - chr2_3:47643915-47643934 Msa0295240:intron 40.0%
! GGGTCTGTCATAAAAAGTAC+GGG - chr2_3:47644097-47644116 Msa0295240:intron 40.0%
TAGTAGGATGGATAAACTGG+AGG - chr2_3:47644150-47644169 Msa0295240:CDS 40.0%
! TTGCAAGTCTTATGGCCATA+CGG + chr2_3:47644234-47644253 None:intergenic 40.0%
AAAGAAAACCCTGTGTCATG+AGG - chr2_3:47644296-47644315 Msa0295240:intron 40.0%
TGAGGATGAGACTGTTAAGA+TGG - chr2_3:47644314-47644333 Msa0295240:intron 40.0%
AGACTGTTAAGATGGATGAG+TGG - chr2_3:47644322-47644341 Msa0295240:intron 40.0%
AATGACCAAAACCTTGGTGA+AGG + chr2_3:47644429-47644448 None:intergenic 40.0%
ACATTAGAGCTAAGGGTTGA+AGG + chr2_3:47644457-47644476 None:intergenic 40.0%
GCTCAACACATTAGAGCTAA+GGG + chr2_3:47644464-47644483 None:intergenic 40.0%
AGCTCAACACATTAGAGCTA+AGG + chr2_3:47644465-47644484 None:intergenic 40.0%
TTCATTAGAGAAAGACGTGG+TGG - chr2_3:47644651-47644670 Msa0295240:intron 40.0%
TGCTTATGGTTGTAGTACAC+TGG - chr2_3:47645447-47645466 Msa0295240:intron 40.0%
!!! GCAGGAACAGATTTTGGAAT+AGG + chr2_3:47645497-47645516 None:intergenic 40.0%
! CACTATGCAGGAACAGATTT+TGG + chr2_3:47645503-47645522 None:intergenic 40.0%
CAAGCATCATTTCACTATGC+AGG + chr2_3:47645515-47645534 None:intergenic 40.0%
CTGCATAGTGAAATGATGCT+TGG - chr2_3:47645513-47645532 Msa0295240:intron 40.0%
ATGGCAATGTACGTATCAAC+TGG - chr2_3:47646082-47646101 Msa0295240:intron 40.0%
AAAGGAACCACAATCAAGAG+TGG - chr2_3:47646120-47646139 Msa0295240:intron 40.0%
AAGATCTCCACTCTTGATTG+TGG + chr2_3:47646130-47646149 None:intergenic 40.0%
GGAGATCTTGTATCAGTTAG+TGG - chr2_3:47646141-47646160 Msa0295240:intron 40.0%
TGGTGTTTACTTCTCCTATC+TGG + chr2_3:47646287-47646306 None:intergenic 40.0%
TGGAATACCAAGTTCAAACC+TGG - chr2_3:47646457-47646476 Msa0295240:CDS 40.0%
TTCTCTTCCAGGTTTGAACT+TGG + chr2_3:47646467-47646486 None:intergenic 40.0%
CCATGGCGAATATGAGTGAT+AGG + chr2_3:47640035-47640054 None:intergenic 45.0%
CCTATCACTCATATTCGCCA+TGG - chr2_3:47640032-47640051 Msa0295240:three_prime_UTR 45.0%
GGAGAGAAGATGAGAGGTAA+GGG + chr2_3:47640175-47640194 None:intergenic 45.0%
AGGAGAGAAGATGAGAGGTA+AGG + chr2_3:47640176-47640195 None:intergenic 45.0%
GGAAAAGGAGAGAAGATGAG+AGG + chr2_3:47640181-47640200 None:intergenic 45.0%
! CTCTCCTTTTCCACTTCTTC+AGG - chr2_3:47640189-47640208 Msa0295240:three_prime_UTR 45.0%
TCATCATCACCATGTTGGGT+TGG + chr2_3:47640402-47640421 None:intergenic 45.0%
!! GAAGGGGATTTTGGTACTGA+AGG - chr2_3:47640531-47640550 Msa0295240:CDS 45.0%
CAAACAGAGCCTTAGTGTGT+GGG + chr2_3:47640607-47640626 None:intergenic 45.0%
TTGGATGGAAACACAGGTCA+TGG + chr2_3:47640928-47640947 None:intergenic 45.0%
!! ATTTGGTGTCCGACTTGAGT+TGG - chr2_3:47641038-47641057 Msa0295240:intron 45.0%
! TGTCTGTGTTGGTCCATATG+AGG - chr2_3:47641158-47641177 Msa0295240:intron 45.0%
! GTCTGTGTTGGTCCATATGA+GGG - chr2_3:47641159-47641178 Msa0295240:intron 45.0%
GGAATACATGACATTGGGGT+TGG - chr2_3:47641180-47641199 Msa0295240:intron 45.0%
! GTTGGGGAGACATGTTTTCA+CGG - chr2_3:47641198-47641217 Msa0295240:intron 45.0%
! TTGGGGAGACATGTTTTCAC+GGG - chr2_3:47641199-47641218 Msa0295240:intron 45.0%
GAAATCATGATTGTGAGCGG+TGG - chr2_3:47641272-47641291 Msa0295240:intron 45.0%
TGGTAACATGTGTGGAGATG+TGG - chr2_3:47641339-47641358 Msa0295240:CDS 45.0%
AATGCTCAACTGCCACTCAA+CGG + chr2_3:47641512-47641531 None:intergenic 45.0%
!! GCAGTTGAGCATTGAATGCT+CGG - chr2_3:47641519-47641538 Msa0295240:intron 45.0%
!! CAGTTGAGCATTGAATGCTC+GGG - chr2_3:47641520-47641539 Msa0295240:intron 45.0%
! TCGGGAAAGGTTTTTGTACG+AGG - chr2_3:47641538-47641557 Msa0295240:intron 45.0%
ACACTCGAGGATGAGATTGT+TGG - chr2_3:47641575-47641594 Msa0295240:intron 45.0%
TGTTATGTGGGCGTGAATGA+AGG - chr2_3:47641613-47641632 Msa0295240:intron 45.0%
GATTTAGATAGGGTGCAGAG+TGG - chr2_3:47641721-47641740 Msa0295240:intron 45.0%
TGCTGCACATACATAACCAC+TGG + chr2_3:47641822-47641841 None:intergenic 45.0%
ATTGCTCAGTAGTTGGGAAG+GGG + chr2_3:47641903-47641922 None:intergenic 45.0%
!!! CGTTTTTTGAAGAAGCACCG+TGG - chr2_3:47641955-47641974 Msa0295240:intron 45.0%
GATGTATTGCTCAAGGGAGT+TGG - chr2_3:47642155-47642174 Msa0295240:intron 45.0%
TGTATTGCTCAAGGGAGTTG+GGG - chr2_3:47642157-47642176 Msa0295240:intron 45.0%
ATTCTAGACTGTCACAAGCC+TGG - chr2_3:47642261-47642280 Msa0295240:intron 45.0%
! CGTCCATTTGACTTCGTTGT+AGG - chr2_3:47642411-47642430 Msa0295240:intron 45.0%
!! GGAGAGCACCTATATCTAGA+TGG + chr2_3:47642572-47642591 None:intergenic 45.0%
CTGGATGTCCAACAGAAATC+CGG + chr2_3:47642673-47642692 None:intergenic 45.0%
GGATCACTTGTCAGTTCATC+TGG + chr2_3:47642692-47642711 None:intergenic 45.0%
CATGAGAGCAAGGTTCAAAC+TGG + chr2_3:47642848-47642867 None:intergenic 45.0%
CAGTTTGAACCTTGCTCTCA+TGG - chr2_3:47642846-47642865 Msa0295240:intron 45.0%
GACTTCCTTGGCTCAATTCT+TGG - chr2_3:47642870-47642889 Msa0295240:CDS 45.0%
CTGTACCAAGAATTGAGCCA+AGG + chr2_3:47642878-47642897 None:intergenic 45.0%
CTTGGCTCAATTCTTGGTAC+AGG - chr2_3:47642876-47642895 Msa0295240:CDS 45.0%
GGAATTGTCAGGGAGAAAGT+TGG - chr2_3:47642897-47642916 Msa0295240:CDS 45.0%
! TGTGCACAGAGCACAGTTTT+AGG + chr2_3:47642972-47642991 None:intergenic 45.0%
ACTGTGCTCTGTGCACAAAA+TGG - chr2_3:47642975-47642994 Msa0295240:intron 45.0%
AAACCAGCTTGTAAGGTGAG+GGG + chr2_3:47643354-47643373 None:intergenic 45.0%
CAAAACCAGCTTGTAAGGTG+AGG + chr2_3:47643356-47643375 None:intergenic 45.0%
CCCAACAAAACCAGCTTGTA+AGG + chr2_3:47643361-47643380 None:intergenic 45.0%
AGAATTTCTTGCGTCAGCAC+TGG - chr2_3:47643770-47643789 Msa0295240:CDS 45.0%
ATTCCTGCACCCTCGAAATT+TGG + chr2_3:47643927-47643946 None:intergenic 45.0%
TGCTGTATGCAGCTGAATGT+TGG - chr2_3:47644254-47644273 Msa0295240:intron 45.0%
GCTGTATGCAGCTGAATGTT+GGG - chr2_3:47644255-47644274 Msa0295240:intron 45.0%
AGTCTCATCCTCATGACACA+GGG + chr2_3:47644307-47644326 None:intergenic 45.0%
ATTGTGTTCCTAAAGGGGGT+TGG + chr2_3:47644490-47644509 None:intergenic 45.0%
! GAGTGTGGCTTGTAAAGTGA+GGG + chr2_3:47645056-47645075 None:intergenic 45.0%
! TGAGTGTGGCTTGTAAAGTG+AGG + chr2_3:47645057-47645076 None:intergenic 45.0%
! GGTATCTTGGTGCAAGTTAC+AGG + chr2_3:47645145-47645164 None:intergenic 45.0%
CTCTTGATTATGAACCGCCA+AGG - chr2_3:47645173-47645192 Msa0295240:intron 45.0%
CGAAGCTAGTTGACATGATC+AGG - chr2_3:47645365-47645384 Msa0295240:intron 45.0%
CAAGAAAATCAAGGAGGAGC+AGG + chr2_3:47645877-47645896 None:intergenic 45.0%
GAAGGCCAAGTTCATCTGAA+CGG - chr2_3:47646201-47646220 Msa0295240:intron 45.0%
CAAAGCCGTTCAGATGAACT+TGG + chr2_3:47646209-47646228 None:intergenic 45.0%
CAAGTTCATCTGAACGGCTT+TGG - chr2_3:47646207-47646226 Msa0295240:intron 45.0%
GTTCTTTGCTCTTCTCTTCC+AGG + chr2_3:47646478-47646497 None:intergenic 45.0%
TACACTCAAGTACAGTCCTG+TGG - chr2_3:47646560-47646579 Msa0295240:CDS 45.0%
!!! TTTTTTATAAAATAAATTGT+GGG - chr2_3:47640305-47640324 Msa0295240:exon 5.0%
!! AATAAACAAAAATATATATT+TGG + chr2_3:47643527-47643546 None:intergenic 5.0%
!! ACAATTAAAAAAAAAAAAAT+TGG + chr2_3:47645264-47645283 None:intergenic 5.0%
! GCTGCAACTACCACTAGCTT+TGG - chr2_3:47640054-47640073 Msa0295240:three_prime_UTR 50.0%
CCAAGCAGTTCCAAAGCTAG+TGG + chr2_3:47640067-47640086 None:intergenic 50.0%
!! CCACTAGCTTTGGAACTGCT+TGG - chr2_3:47640064-47640083 Msa0295240:three_prime_UTR 50.0%
CCAAACAGAGCCTTAGTGTG+TGG + chr2_3:47640608-47640627 None:intergenic 50.0%
CCACACACTAAGGCTCTGTT+TGG - chr2_3:47640605-47640624 Msa0295240:intron 50.0%
AGTCGGACACCAACTCAAGT+CGG + chr2_3:47641050-47641069 None:intergenic 50.0%
ATGATTGTGAGCGGTGGTAC+TGG - chr2_3:47641278-47641297 Msa0295240:intron 50.0%
CGGGAACACCAAGCATACTT+TGG + chr2_3:47641492-47641511 None:intergenic 50.0%
ATGCTCAACTGCCACTCAAC+GGG + chr2_3:47641511-47641530 None:intergenic 50.0%
!! GAGCATTGAATGCTCGGGAA+AGG - chr2_3:47641525-47641544 Msa0295240:intron 50.0%
!! GGGTGCAGAGTGGATTAATG+TGG - chr2_3:47641731-47641750 Msa0295240:intron 50.0%
! GTGGATTAATGTGGCACCCT+TGG - chr2_3:47641740-47641759 Msa0295240:intron 50.0%
CTCTTGACGATACAGGAGCA+AGG + chr2_3:47641787-47641806 None:intergenic 50.0%
!! TTGAAGAAGCACCGTGGTTG+TGG - chr2_3:47641961-47641980 Msa0295240:intron 50.0%
GCTTTCTGACGTGCAGATTC+AGG - chr2_3:47642095-47642114 Msa0295240:intron 50.0%
AGGAAGTCACCATGAGAGCA+AGG + chr2_3:47642858-47642877 None:intergenic 50.0%
TGCTCTCATGGTGACTTCCT+TGG - chr2_3:47642858-47642877 Msa0295240:intron 50.0%
CTTGTTACCCAGGGAGAACA+GGG - chr2_3:47643717-47643736 Msa0295240:intron 50.0%
! TCTTGCGTCAGCACTGGATA+AGG - chr2_3:47643776-47643795 Msa0295240:CDS 50.0%
! TCTCCAAATTTCGAGGGTGC+AGG - chr2_3:47643921-47643940 Msa0295240:intron 50.0%
CAGTCTCATCCTCATGACAC+AGG + chr2_3:47644308-47644327 None:intergenic 50.0%
AGTCTGGACATGTGTCAGAG+AGG - chr2_3:47644568-47644587 Msa0295240:intron 50.0%
GAACCGCCAAGGTAACATCT+TGG - chr2_3:47645184-47645203 Msa0295240:intron 50.0%
! GCTGGTTTCGTAAGCTATCC+TGG + chr2_3:47645665-47645684 None:intergenic 50.0%
GCTAGTGGTAGTTGCAGCCA+TGG + chr2_3:47640052-47640071 None:intergenic 55.0%
GGTACAAGCAACCGAGCAAG+TGG - chr2_3:47641299-47641318 Msa0295240:CDS 55.0%
!! TGCTTGGTGTTCCCGTTGAG+TGG - chr2_3:47641497-47641516 Msa0295240:CDS 55.0%
GGCTCAAGGAGGTTATCCAC+AGG - chr2_3:47642543-47642562 Msa0295240:intron 55.0%
CTCTTTAGGCTGAACGGTGC+CGG - chr2_3:47642651-47642670 Msa0295240:intron 55.0%
! GAACGGTGCCGGATTTCTGT+TGG - chr2_3:47642662-47642681 Msa0295240:intron 55.0%
ACACCCCTCACCTTACAAGC+TGG - chr2_3:47643348-47643367 Msa0295240:intron 55.0%
CCTGTTCTCCCTGGGTAACA+AGG + chr2_3:47643719-47643738 None:intergenic 55.0%
CCTTGTTACCCAGGGAGAAC+AGG - chr2_3:47643716-47643735 Msa0295240:intron 55.0%
TGAGCTAGCCAACCCCCTTT+AGG - chr2_3:47644479-47644498 Msa0295240:CDS 55.0%
CTGGACATGTGTCAGAGAGG+AGG - chr2_3:47644571-47644590 Msa0295240:intron 55.0%
GGGCCAAGATGTTACCTTGG+CGG + chr2_3:47645190-47645209 None:intergenic 55.0%
CCAGGGCCAAGATGTTACCT+TGG + chr2_3:47645193-47645212 None:intergenic 55.0%
CCAAGGTAACATCTTGGCCC+TGG - chr2_3:47645190-47645209 Msa0295240:intron 55.0%
GTTGATGCAGTAGCCAGTGC+AGG - chr2_3:47645325-47645344 Msa0295240:intron 55.0%
AAGCAACCGAGCAAGTGGCG+TGG - chr2_3:47641304-47641323 Msa0295240:CDS 60.0%
AGCAACCGAGCAAGTGGCGT+GGG - chr2_3:47641305-47641324 Msa0295240:CDS 60.0%
ATCAGCCCACGCCACTTGCT+CGG + chr2_3:47641313-47641332 None:intergenic 60.0%
! TGGCGTGGGCTGATGATGAG+TGG - chr2_3:47641319-47641338 Msa0295240:CDS 60.0%
CTGAGCACCCTGTTCTCCCT+GGG + chr2_3:47643727-47643746 None:intergenic 60.0%
TCTGAGCACCCTGTTCTCCC+TGG + chr2_3:47643728-47643747 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 47640008 47646659 47640008 ID=Msa0295240;Name=Msa0295240
chr2_3 mRNA 47640008 47646659 47640008 ID=Msa0295240-mRNA-1;Parent=Msa0295240;Name=Msa0295240-mRNA-1;_AED=0.09;_eAED=0.09;_QI=43|1|1|1|1|1|10|309|325
chr2_3 exon 47640008 47640379 47640008 ID=Msa0295240-mRNA-1:exon:14883;Parent=Msa0295240-mRNA-1
chr2_3 exon 47640488 47640587 47640488 ID=Msa0295240-mRNA-1:exon:14882;Parent=Msa0295240-mRNA-1
chr2_3 exon 47641281 47641379 47641281 ID=Msa0295240-mRNA-1:exon:14881;Parent=Msa0295240-mRNA-1
chr2_3 exon 47641473 47641537 47641473 ID=Msa0295240-mRNA-1:exon:14880;Parent=Msa0295240-mRNA-1
chr2_3 exon 47642870 47642938 47642870 ID=Msa0295240-mRNA-1:exon:14879;Parent=Msa0295240-mRNA-1
chr2_3 exon 47643732 47643837 47643732 ID=Msa0295240-mRNA-1:exon:14878;Parent=Msa0295240-mRNA-1
chr2_3 exon 47643935 47644008 47643935 ID=Msa0295240-mRNA-1:exon:14877;Parent=Msa0295240-mRNA-1
chr2_3 exon 47644103 47644234 47644103 ID=Msa0295240-mRNA-1:exon:14876;Parent=Msa0295240-mRNA-1
chr2_3 exon 47644447 47644556 47644447 ID=Msa0295240-mRNA-1:exon:14875;Parent=Msa0295240-mRNA-1
chr2_3 exon 47646457 47646659 47646457 ID=Msa0295240-mRNA-1:exon:14874;Parent=Msa0295240-mRNA-1
chr2_3 five_prime_UTR 47646617 47646659 47646617 ID=Msa0295240-mRNA-1:five_prime_utr;Parent=Msa0295240-mRNA-1
chr2_3 CDS 47646457 47646616 47646457 ID=Msa0295240-mRNA-1:cds;Parent=Msa0295240-mRNA-1
chr2_3 CDS 47644447 47644556 47644447 ID=Msa0295240-mRNA-1:cds;Parent=Msa0295240-mRNA-1
chr2_3 CDS 47644103 47644234 47644103 ID=Msa0295240-mRNA-1:cds;Parent=Msa0295240-mRNA-1
chr2_3 CDS 47643935 47644008 47643935 ID=Msa0295240-mRNA-1:cds;Parent=Msa0295240-mRNA-1
chr2_3 CDS 47643732 47643837 47643732 ID=Msa0295240-mRNA-1:cds;Parent=Msa0295240-mRNA-1
chr2_3 CDS 47642870 47642938 47642870 ID=Msa0295240-mRNA-1:cds;Parent=Msa0295240-mRNA-1
chr2_3 CDS 47641473 47641537 47641473 ID=Msa0295240-mRNA-1:cds;Parent=Msa0295240-mRNA-1
chr2_3 CDS 47641281 47641379 47641281 ID=Msa0295240-mRNA-1:cds;Parent=Msa0295240-mRNA-1
chr2_3 CDS 47640488 47640587 47640488 ID=Msa0295240-mRNA-1:cds;Parent=Msa0295240-mRNA-1
chr2_3 CDS 47640317 47640379 47640317 ID=Msa0295240-mRNA-1:cds;Parent=Msa0295240-mRNA-1
chr2_3 three_prime_UTR 47640008 47640316 47640008 ID=Msa0295240-mRNA-1:three_prime_utr;Parent=Msa0295240-mRNA-1
Gene Sequence

>Msa0295240

ATGGCTGCAACTACCACTAGCTTTGGAACTGCTTGGTGTCTTAGAAGAGTAACTCAAGCTTTTGCACTTTCTCATTCTCATAATCTCCGCAACAATGCTAACAACCTCTCTTTTCAAAGGACCCTTACCTCTCATCTTCTCTCCTTTTCCACTTCTTCAGATTCAGGTGCAAGCACGACAGTGCATGCTTCAAAACGAGAAGTTGATGTATTGCTCAAGGGAGTTGGGGAGAAAAGTGTAGAAAATGAAGTGAAGCATGTTCTTGAGATGGCTAGACGAGCATCATTAAAACGACAGATTCTCCATACAAATTTTCTAACCCCTCCAGTGCTAAAAGAATCTATGCAAGTATTGGAAAAATTAGCGGACATTAAAGCATTGGCTCAAGGAGGTTATCCACAGGCTGAACGGTGCCGGATTTCTGTTGGACATCCAGATGAACTGACAAGTGATCCAGATGTTATTTCGGCATTGAGCATTACAGGGAACTTCCAGTTTGAACCTTGCTCTCATGGTGACTTCCTTGGCTCAATTCTTGGTACAGGAATTGTCAGGGAGAAAGTTGGGGATATTATATTGCAGGGAGAACAGGGTGCTCAGATAATTGTTGTACCAGAGCTTGTAGAATTTCTTGCGTCAGCACTGGATAAGGTTCGTAATGTTCCTGTAACTTGCACCAAGATACCATTAATTTCTCTTGATTATGAACCGCCAAGAACAAAATCATTCAAAACTATAGAAGCGTCACTAAGAGTTGATGCAGTAGCCAGTGCAGGATTTAAGATTTCACGTTCGAAGCTAGTTGACATGATCAGCAATGGCAATGTACGTATCAACTGGATCCCAATTACTACAAAAGGAACCACAATCAAGAGTGGAGATCTTGTATCAGTTAGTGGATTGGGAAGATTAAAGATAGGAGAAGTAAACACCACAAAGAAAGGAAAATTTGCAGTGGAACTCATTCGATATTTGTAG

Protein sequence

>Msa0295240

MAATTTSFGTAWCLRRVTQAFALSHSHNLRNNANNLSFQRTLTSHLLSFSTSSDSGASTTVHASKREVDVLLKGVGEKSVENEVKHVLEMARRASLKRQILHTNFLTPPVLKESMQVLEKLADIKALAQGGYPQAERCRISVGHPDELTSDPDVISALSITGNFQFEPCSHGDFLGSILGTGIVREKVGDIILQGEQGAQIIVVPELVEFLASALDKVRNVPVTCTKIPLISLDYEPPRTKSFKTIEASLRVDAVASAGFKISRSKLVDMISNGNVRINWIPITTKGTTIKSGDLVSVSGLGRLKIGEVNTTKKGKFAVELIRYL*