AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0215980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0215980 MtrunA17_Chr2g0317401 97.538 325 8 0 1 325 1 325 0.0 649
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0215980 AT1G53120.1 63.804 326 103 5 6 325 4 320 7.19e-149 421
Msa0215980 AT1G53120.2 63.804 326 102 6 6 325 4 319 4.44e-147 417

Find 84 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTTCCTTGGCTCAATTCT+TGG 0.207293 2_1:-61529982 Msa0215980:CDS
GTTCTTTGCTCTTCTCTTCC+AGG 0.220937 2_1:+61526379 None:intergenic
TAGTGGATTGGGAAGATTAA+AGG 0.272114 2_1:-61526696 Msa0215980:intron
GTGATAGGTTCCATATGATA+TGG 0.300702 2_1:+61532836 None:intergenic
TGTGATCAAATAAGCATATA+TGG 0.320912 2_1:+61526434 None:intergenic
GGTATCTTGGTGCAAGTTAC+AGG 0.327096 2_1:+61527713 None:intergenic
CAGTTTGAACCTTGCTCTCA+TGG 0.330450 2_1:-61530006 Msa0215980:CDS
GGATCACTTGTCAGTTCATC+TGG 0.343082 2_1:+61530163 None:intergenic
TGCTCTCATGGTGACTTCCT+TGG 0.363969 2_1:-61529994 Msa0215980:CDS
GAACAGATTTCAATGTATAA+TGG 0.368359 2_1:-61526360 Msa0215980:three_prime_UTR
CCTTGTTACCCAGGGAGAAC+AGG 0.372665 2_1:-61529139 Msa0215980:intron
ATGTATTGCTCAAGGGAGTT+GGG 0.373857 2_1:-61530696 Msa0215980:CDS
AAGTGATCCAGATGTTATTT+CGG 0.379461 2_1:-61530149 Msa0215980:CDS
CTTGTATCAGTTAGTGGATT+GGG 0.386024 2_1:-61526707 Msa0215980:CDS
ATCACATTACATTGCTTATG+TGG 0.393777 2_1:-61526417 Msa0215980:three_prime_UTR
AGTTGGGGATATTATATTGC+AGG 0.396380 2_1:-61529938 Msa0215980:intron
CGAAGCTAGTTGACATGATC+AGG 0.398418 2_1:-61527489 Msa0215980:intron
TCATAATCAAGAGAAATTAA+TGG 0.400281 2_1:+61527692 None:intergenic
GAATTGTCAGGGAGAAAGTT+GGG 0.409360 2_1:-61529954 Msa0215980:CDS
AAGAGAAATTAATGGTATCT+TGG 0.414759 2_1:+61527700 None:intergenic
TCTTGCGTCAGCACTGGATA+AGG 0.420014 2_1:-61529079 Msa0215980:intron
GGAGATCTTGTATCAGTTAG+TGG 0.420203 2_1:-61526713 Msa0215980:CDS
GCTGCAACTACCACTAGCTT+TGG 0.424137 2_1:-61532799 Msa0215980:CDS
CTCTTTAGGCTGAACGGTGC+CGG 0.424686 2_1:-61530201 Msa0215980:intron
CTTGGCTCAATTCTTGGTAC+AGG 0.426476 2_1:-61529976 Msa0215980:CDS
GATGTATTGCTCAAGGGAGT+TGG 0.427872 2_1:-61530697 Msa0215980:CDS
AGGAGAGAAGATGAGAGGTA+AGG 0.433483 2_1:+61532680 None:intergenic
GAGGGGTTAGAAAATTTGTA+TGG 0.436886 2_1:+61530387 None:intergenic
GAAGTAAACACCACAAAGAA+AGG 0.438769 2_1:-61526560 Msa0215980:CDS
CTCAATGCCGAAATAACATC+TGG 0.441188 2_1:+61530142 None:intergenic
TTCTCTTCCAGGTTTGAACT+TGG 0.443257 2_1:+61526390 None:intergenic
AAAAGAATCTATGCAAGTAT+TGG 0.445890 2_1:-61530357 Msa0215980:CDS
CATGAGAGCAAGGTTCAAAC+TGG 0.449126 2_1:+61530007 None:intergenic
CCATGGCGAATATGAGTGAT+AGG 0.450189 2_1:+61532821 None:intergenic
GTAACCTGAAGAAGTGGAAA+AGG 0.453594 2_1:+61532660 None:intergenic
TGGATCCCAATTACTACAAA+AGG 0.454338 2_1:-61526752 Msa0215980:CDS
ATGGCAATGTACGTATCAAC+TGG 0.455317 2_1:-61526772 Msa0215980:CDS
TTCTTGGTACAGGAATTGTC+AGG 0.461050 2_1:-61529966 Msa0215980:CDS
ACACACATACCCATATCATA+TGG 0.465023 2_1:-61532846 Msa0215980:five_prime_UTR
CTGGATGTCCAACAGAAATC+CGG 0.476765 2_1:+61530182 None:intergenic
AGAATTTCTTGCGTCAGCAC+TGG 0.477119 2_1:-61529085 Msa0215980:CDS
GAACGGTGCCGGATTTCTGT+TGG 0.493515 2_1:-61530190 Msa0215980:CDS
TAGAGAGTAACCTGAAGAAG+TGG 0.494138 2_1:+61532654 None:intergenic
TCTTGTATCAGTTAGTGGAT+TGG 0.495279 2_1:-61526708 Msa0215980:CDS
GTTGATGCAGTAGCCAGTGC+AGG 0.500484 2_1:-61527529 Msa0215980:CDS
AAATAATTATTGACAATACA+AGG 0.502265 2_1:+61526244 None:intergenic
ATTAGCGGACATTAAAGCAT+TGG 0.502673 2_1:-61530330 Msa0215980:CDS
AATAATTATTTGAATTCCTG+TGG 0.517980 2_1:-61526232 Msa0215980:three_prime_UTR
GGAGAGAAGATGAGAGGTAA+GGG 0.518934 2_1:+61532681 None:intergenic
GCAAGAAATTCTACAAGCTC+TGG 0.522573 2_1:+61529096 None:intergenic
GGACATTTAAATAATAAAAG+AGG 0.526656 2_1:+61526455 None:intergenic
TGAAATCTTAAATCCTGCAC+TGG 0.527319 2_1:+61527516 None:intergenic
GGAATTGTCAGGGAGAAAGT+TGG 0.527589 2_1:-61529955 Msa0215980:CDS
TGATAGGTTCCATATGATAT+GGG 0.532452 2_1:+61532837 None:intergenic
CCACTAGCTTTGGAACTGCT+TGG 0.535075 2_1:-61532789 Msa0215980:CDS
CTCTTGATTATGAACCGCCA+AGG 0.539330 2_1:-61527682 Msa0215980:intron
GGGCCAAGATGTTACCTTGG+CGG 0.539528 2_1:+61527668 None:intergenic
CAGATGTTATTTCGGCATTG+AGG 0.539649 2_1:-61530141 Msa0215980:intron
GACATTAAAGCATTGGCTCA+AGG 0.555546 2_1:-61530323 Msa0215980:CDS
TGGAATACCAAGTTCAAACC+TGG 0.561544 2_1:-61526397 Msa0215980:three_prime_UTR
AGAGGTTGTTAGCATTGTTG+CGG 0.563507 2_1:+61532716 None:intergenic
AGAAGTTGATGTATTGCTCA+AGG 0.564298 2_1:-61530704 Msa0215980:CDS
CTTGTTACCCAGGGAGAACA+GGG 0.565414 2_1:-61529138 Msa0215980:intron
GCTAGTGGTAGTTGCAGCCA+TGG 0.567257 2_1:+61532804 None:intergenic
AAGATCTCCACTCTTGATTG+TGG 0.570795 2_1:+61526727 None:intergenic
GGAAAAGGAGAGAAGATGAG+AGG 0.603841 2_1:+61532675 None:intergenic
TATATGCTCTTTAGGCTGAA+CGG 0.610234 2_1:-61530207 Msa0215980:intron
TGTATTGCTCAAGGGAGTTG+GGG 0.611297 2_1:-61530695 Msa0215980:CDS
AGGAAGTCACCATGAGAGCA+AGG 0.611523 2_1:+61529997 None:intergenic
AAAGAAAGGAAAATTTGCAG+TGG 0.618269 2_1:-61526546 Msa0215980:CDS
GGCTCAAGGAGGTTATCCAC+AGG 0.618562 2_1:-61530309 Msa0215980:intron
TAAGGGTCCTTTGAAAAGAG+AGG 0.622157 2_1:+61532698 None:intergenic
GAAGTTGATGTATTGCTCAA+GGG 0.624002 2_1:-61530703 Msa0215980:CDS
AAAGGAACCACAATCAAGAG+TGG 0.627963 2_1:-61526734 Msa0215980:CDS
TCTTGGTACAGGAATTGTCA+GGG 0.628354 2_1:-61529965 Msa0215980:CDS
CAAACAGAGGAAATGTCCAC+AGG 0.628886 2_1:+61526216 None:intergenic
CCTATCACTCATATTCGCCA+TGG 0.633026 2_1:-61532821 Msa0215980:exon
CCAAGCAGTTCCAAAGCTAG+TGG 0.639165 2_1:+61532789 None:intergenic
AATTGTCAGGGAGAAAGTTG+GGG 0.647375 2_1:-61529953 Msa0215980:CDS
CTGTACCAAGAATTGAGCCA+AGG 0.655995 2_1:+61529977 None:intergenic
TACACTCAAGTACAGTCCTG+TGG 0.662185 2_1:-61526294 Msa0215980:three_prime_UTR
AGTGAAGCATGTTCTTGAGA+TGG 0.664704 2_1:-61530653 Msa0215980:intron
CATTATTGAGGAACAAACAG+AGG 0.672735 2_1:+61526203 None:intergenic
ATTAAAGCATTGGCTCAAGG+AGG 0.676251 2_1:-61530320 Msa0215980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTATAAAATAAATTG+TGG - chr2_1:61526513-61526532 Msa0215980:exon 10.0%
!! ACTGAAAATAAATTAAATAA+TGG + chr2_1:61526567-61526586 None:intergenic 10.0%
!! AAAATAAAATAATTTAATCC+AGG + chr2_1:61529671-61529690 None:intergenic 10.0%
!! TAGCATAAAATGATATATAA+TGG + chr2_1:61528570-61528589 None:intergenic 15.0%
!! TTATCTAAATATACTATGAA+AGG + chr2_1:61529005-61529024 None:intergenic 15.0%
!!! TGATATTTTATATACAACAA+AGG - chr2_1:61529263-61529282 Msa0215980:intron 15.0%
!!! ATAAAAGAACTTTTTACTAT+AGG - chr2_1:61530330-61530349 Msa0215980:CDS 15.0%
!! TTGAAATTGTGTTTATAAAT+GGG - chr2_1:61531231-61531250 Msa0215980:intron 15.0%
!!! ATGTTTAATTTATTTCATTC+TGG - chr2_1:61532468-61532487 Msa0215980:intron 15.0%
!! AAATAATTATTGACAATACA+AGG + chr2_1:61532821-61532840 None:intergenic 15.0%
!! CCTACAAAAAAAAATAGAAA+TGG + chr2_1:61526444-61526463 None:intergenic 20.0%
!!! CCATTTCTATTTTTTTTTGT+AGG - chr2_1:61526441-61526460 Msa0215980:three_prime_UTR 20.0%
!!! TTTTGAACAATTGAACATAA+TGG + chr2_1:61526486-61526505 None:intergenic 20.0%
!!! TTGTAGTAAAGTTTAAAACT+TGG - chr2_1:61526666-61526685 Msa0215980:intron 20.0%
!! AGTTTCACATTGTTTATTAT+TGG - chr2_1:61527845-61527864 Msa0215980:intron 20.0%
!! TATCTAAATCAAAAACCTTA+AGG + chr2_1:61527920-61527939 None:intergenic 20.0%
!!! TTAAGGTTTTTGATTTAGAT+AGG - chr2_1:61527919-61527938 Msa0215980:intron 20.0%
!!! TAAGGTTTTTGATTTAGATA+GGG - chr2_1:61527920-61527939 Msa0215980:intron 20.0%
!!! TCTTAGCTAAATCATTATTT+TGG - chr2_1:61528248-61528267 Msa0215980:intron 20.0%
!! ACATAATATATATGCTCTTT+AGG - chr2_1:61528847-61528866 Msa0215980:intron 20.0%
!!! TTTTAGGTAAAAGTAGTAAA+TGG + chr2_1:61529166-61529185 None:intergenic 20.0%
!! CTCAAAAAATGTTTATAAGT+GGG - chr2_1:61529530-61529549 Msa0215980:intron 20.0%
!! TGGTCAAATAAAACATATAA+TGG + chr2_1:61529697-61529716 None:intergenic 20.0%
!!! TATGTTTTATTTGACCATTT+TGG - chr2_1:61529700-61529719 Msa0215980:intron 20.0%
!! TCTCTATATCTTTCTTAATT+GGG + chr2_1:61529777-61529796 None:intergenic 20.0%
!! ATCTCTATATCTTTCTTAAT+TGG + chr2_1:61529778-61529797 None:intergenic 20.0%
!! AAAGTTATACAAAATACGAA+GGG + chr2_1:61529893-61529912 None:intergenic 20.0%
!! GATACGTAAATTTATTAAGA+AGG + chr2_1:61530042-61530061 None:intergenic 20.0%
!! AATTTACGTATCAAAACAAA+AGG - chr2_1:61530050-61530069 Msa0215980:intron 20.0%
!!! TAGGAATACAATCTTTTTAT+TGG - chr2_1:61530573-61530592 Msa0215980:intron 20.0%
!! TAGACTAATGTTAGTATATT+AGG - chr2_1:61530597-61530616 Msa0215980:intron 20.0%
!! TTTATAATTGTGTTCCTAAA+GGG + chr2_1:61530703-61530722 None:intergenic 20.0%
!!! TTTTATAATTGTGTTCCTAA+AGG + chr2_1:61530704-61530723 None:intergenic 20.0%
!! TATTGATCAAATCATTGAAA+AGG - chr2_1:61531023-61531042 Msa0215980:intron 20.0%
!! CTTGAAATTGTGTTTATAAA+TGG - chr2_1:61531230-61531249 Msa0215980:intron 20.0%
!! TCATAATCAAGAGAAATTAA+TGG + chr2_1:61531373-61531392 None:intergenic 20.0%
!! CATCATATATACACAAATTA+GGG + chr2_1:61531607-61531626 None:intergenic 20.0%
!! ACATCATATATACACAAATT+AGG + chr2_1:61531608-61531627 None:intergenic 20.0%
!! ACATAACATAAGTCAATATA+TGG - chr2_1:61531758-61531777 Msa0215980:intron 20.0%
!! CATTAAATTTATGCTCTATT+TGG + chr2_1:61532022-61532041 None:intergenic 20.0%
!! GGACATTTAAATAATAAAAG+AGG + chr2_1:61532610-61532629 None:intergenic 20.0%
!! AATAATTATTTGAATTCCTG+TGG - chr2_1:61532830-61532849 Msa0215980:five_prime_UTR 20.0%
!!! TTTTGTAGGTTGATTCTATT+TGG - chr2_1:61526455-61526474 Msa0215980:three_prime_UTR 25.0%
! TGATGAATATATTGCTGAAT+TGG - chr2_1:61526625-61526644 Msa0215980:intron 25.0%
!!! TTTTGATTTTAGGGTTTGTT+TGG + chr2_1:61527075-61527094 None:intergenic 25.0%
!!! AGCACTTCATTTTGATTTTA+GGG + chr2_1:61527084-61527103 None:intergenic 25.0%
!!! AAGCACTTCATTTTGATTTT+AGG + chr2_1:61527085-61527104 None:intergenic 25.0%
! TTCAAACTTAAGTTTCTACT+TGG + chr2_1:61527156-61527175 None:intergenic 25.0%
!! TTCACTTTCCTAAAGTATTA+TGG - chr2_1:61527293-61527312 Msa0215980:intron 25.0%
! TTATATGGAATGAGAATCAA+TGG - chr2_1:61527432-61527451 Msa0215980:intron 25.0%
! TAGTAAGAAAATGGTTAAGA+TGG - chr2_1:61527654-61527673 Msa0215980:intron 25.0%
! AGTAAGAAAATGGTTAAGAT+GGG - chr2_1:61527655-61527674 Msa0215980:intron 25.0%
! ACATTGTTTATTATTGGACA+AGG - chr2_1:61527851-61527870 Msa0215980:intron 25.0%
! TGATTTATCCTTTGATCATT+TGG - chr2_1:61528137-61528156 Msa0215980:intron 25.0%
! AAGCATTAAAAATGTGAAAC+TGG + chr2_1:61528289-61528308 None:intergenic 25.0%
! ATGAAATTTGTATGGATCAA+GGG + chr2_1:61528453-61528472 None:intergenic 25.0%
! AATGAAATTTGTATGGATCA+AGG + chr2_1:61528454-61528473 None:intergenic 25.0%
!! AGTCTAGAATGAAATTTGTA+TGG + chr2_1:61528461-61528480 None:intergenic 25.0%
! AATGATATATAATGGCTCAA+AGG + chr2_1:61528562-61528581 None:intergenic 25.0%
! AAAAGAATCTATGCAAGTAT+TGG - chr2_1:61528705-61528724 Msa0215980:intron 25.0%
!!! CCACTTATAAACATTTTTTG+AGG + chr2_1:61529532-61529551 None:intergenic 25.0%
! CCTCAAAAAATGTTTATAAG+TGG - chr2_1:61529529-61529548 Msa0215980:intron 25.0%
! CAAAGTTATACAAAATACGA+AGG + chr2_1:61529894-61529913 None:intergenic 25.0%
!!! GCAGGAATTTTTTAAAATCT+CGG - chr2_1:61530146-61530165 Msa0215980:CDS 25.0%
! TACTAAATTTCGTAGTTTGA+AGG - chr2_1:61530231-61530250 Msa0215980:intron 25.0%
!! TTTTACTATAGGATCTTAGT+AGG - chr2_1:61530341-61530360 Msa0215980:CDS 25.0%
!! GAAACGTTATTCAAGTTTAA+AGG - chr2_1:61530407-61530426 Msa0215980:CDS 25.0%
! TTAAAGGAAATTATACCGTA+TGG - chr2_1:61530423-61530442 Msa0215980:intron 25.0%
! AAACATGACAAGATAGAATT+AGG - chr2_1:61530554-61530573 Msa0215980:intron 25.0%
! TTATAATTGTGTTCCTAAAG+GGG + chr2_1:61530702-61530721 None:intergenic 25.0%
! CACAATTATAAAACGAAATG+CGG - chr2_1:61530711-61530730 Msa0215980:CDS 25.0%
!! ATCCTTTAACTTAAGTGATT+TGG - chr2_1:61530906-61530925 Msa0215980:intron 25.0%
!! TCCTTTAACTTAAGTGATTT+GGG - chr2_1:61530907-61530926 Msa0215980:intron 25.0%
! AGTAAAGAAAGTAGATCATA+TGG - chr2_1:61530959-61530978 Msa0215980:intron 25.0%
! GTAAAGAAAGTAGATCATAT+GGG - chr2_1:61530960-61530979 Msa0215980:intron 25.0%
! TTCAATTGTTAAAGCCTTAA+AGG - chr2_1:61530989-61531008 Msa0215980:intron 25.0%
! ATAGTTCTTATTCACCTTTA+AGG + chr2_1:61531006-61531025 None:intergenic 25.0%
! GAAAAGGATTCAGATTTAAA+TGG - chr2_1:61531039-61531058 Msa0215980:intron 25.0%
! GAAAAAAAAAACTTTCCATC+AGG + chr2_1:61531129-61531148 None:intergenic 25.0%
!!! TTTTTTTCTTTTTCTGTGTG+CGG - chr2_1:61531141-61531160 Msa0215980:intron 25.0%
! AAGTCATATCACATATAATG+TGG + chr2_1:61531213-61531232 None:intergenic 25.0%
! AAGAGAAATTAATGGTATCT+TGG + chr2_1:61531365-61531384 None:intergenic 25.0%
!!! TTGAATTCTTGATTTGCTTA+TGG - chr2_1:61531641-61531660 Msa0215980:intron 25.0%
! AAGTTATAAAACTTATGAGC+TGG + chr2_1:61531891-61531910 None:intergenic 25.0%
! AAATAAGTGCAAGAAAATCA+AGG + chr2_1:61532094-61532113 None:intergenic 25.0%
!! CTCTTTTGCATGAAATATTT+TGG - chr2_1:61532219-61532238 Msa0215980:intron 25.0%
! ACTTGTAAAAGCTTAAAAGA+AGG - chr2_1:61532391-61532410 Msa0215980:intron 25.0%
! TACTCAAAACAAAAAGAAAG+TGG + chr2_1:61532448-61532467 None:intergenic 25.0%
! TGTGATCAAATAAGCATATA+TGG + chr2_1:61532631-61532650 None:intergenic 25.0%
! GAACAGATTTCAATGTATAA+TGG - chr2_1:61532702-61532721 Msa0215980:CDS 25.0%
TGATAGGTTCCATATGATAT+GGG + chr2_1:61526228-61526247 None:intergenic 30.0%
ATATTCATCATCACCATGTT+GGG + chr2_1:61526615-61526634 None:intergenic 30.0%
TATATTCATCATCACCATGT+TGG + chr2_1:61526616-61526635 None:intergenic 30.0%
CTACAATTTATGAAACCCTT+TGG + chr2_1:61526652-61526671 None:intergenic 30.0%
GGTCATGAACATATCATAAA+CGG - chr2_1:61526982-61527001 Msa0215980:intron 30.0%
AACTTAAGTTTCTACTTGGA+TGG + chr2_1:61527152-61527171 None:intergenic 30.0%
TGTGTTATATTACAGTCAGT+GGG + chr2_1:61527185-61527204 None:intergenic 30.0%
TTGTGTTATATTACAGTCAG+TGG + chr2_1:61527186-61527205 None:intergenic 30.0%
GAATGAATGTAATCACAAGT+CGG + chr2_1:61527276-61527295 None:intergenic 30.0%
AGTAGACACCATAATACTTT+AGG + chr2_1:61527304-61527323 None:intergenic 30.0%
AAAGAAATCATGATTGTGAG+CGG - chr2_1:61527478-61527497 Msa0215980:intron 30.0%
! TTGAAAGTATGTCTGATAGT+TGG - chr2_1:61527613-61527632 Msa0215980:intron 30.0%
ACAACGAAACTAATACCTTA+AGG - chr2_1:61527902-61527921 Msa0215980:intron 30.0%
TGTAATGAAGAACTTACCAA+GGG + chr2_1:61527968-61527987 None:intergenic 30.0%
ATGTAATGAAGAACTTACCA+AGG + chr2_1:61527969-61527988 None:intergenic 30.0%
ATAATAACTCTTGACGATAC+AGG + chr2_1:61528003-61528022 None:intergenic 30.0%
GTATCGTCAAGAGTTATTAT+TGG - chr2_1:61528003-61528022 Msa0215980:intron 30.0%
TCAGTAGTAATGTTTATGAC+TGG - chr2_1:61528057-61528076 Msa0215980:intron 30.0%
ATCAAAATTGCTCAGTAGTT+GGG + chr2_1:61528118-61528137 None:intergenic 30.0%
CATGTAGAAAAAAAAGTTCC+AGG + chr2_1:61528492-61528511 None:intergenic 30.0%
!!! CTGGAACTTTTTTTTCTACA+TGG - chr2_1:61528490-61528509 Msa0215980:intron 30.0%
TCAACATTTGATGTATGGTT+CGG - chr2_1:61528536-61528555 Msa0215980:intron 30.0%
!! GCAAGTATTGGAAAAATTAG+CGG - chr2_1:61528717-61528736 Msa0215980:intron 30.0%
ACTTTACTGTATCAAGGTAA+TGG + chr2_1:61528803-61528822 None:intergenic 30.0%
! AAGTGATCCAGATGTTATTT+CGG - chr2_1:61528913-61528932 Msa0215980:intron 30.0%
GCATCAACAATTTCTGTATT+GGG + chr2_1:61528973-61528992 None:intergenic 30.0%
AGCATCAACAATTTCTGTAT+TGG + chr2_1:61528974-61528993 None:intergenic 30.0%
!! ATATACTATGAAAGGCATCT+AGG + chr2_1:61528997-61529016 None:intergenic 30.0%
! ATTACTCTTTTCAGCATTAC+AGG - chr2_1:61529026-61529045 Msa0215980:intron 30.0%
! TTACTCTTTTCAGCATTACA+GGG - chr2_1:61529027-61529046 Msa0215980:intron 30.0%
! GGATCTTTTACTATATACAC+AGG + chr2_1:61529351-61529370 None:intergenic 30.0%
CAAAGTTAAATCATTGTGAC+TGG - chr2_1:61529478-61529497 Msa0215980:intron 30.0%
AGATATAGAGATTAATGAGC+TGG - chr2_1:61529786-61529805 Msa0215980:intron 30.0%
TATCACACTTTAAGTACCTT+GGG - chr2_1:61530284-61530303 Msa0215980:intron 30.0%
TATAATTGTGTTCCTAAAGG+GGG + chr2_1:61530701-61530720 None:intergenic 30.0%
! ACATGTTCTATCATCTTTTC+TGG + chr2_1:61530748-61530767 None:intergenic 30.0%
TCCCAAATCACTTAAGTTAA+AGG + chr2_1:61530911-61530930 None:intergenic 30.0%
! TTAAGTGATTTGGGAAAATG+TGG - chr2_1:61530916-61530935 Msa0215980:intron 30.0%
CTTAAGATTTGAATTGAGTG+TGG + chr2_1:61531278-61531297 None:intergenic 30.0%
TTTATGTCAACTTCAAACCA+GGG + chr2_1:61531417-61531436 None:intergenic 30.0%
! TTTTATGTCAACTTCAAACC+AGG + chr2_1:61531418-61531437 None:intergenic 30.0%
TTGTGTATATATGATGTCTG+TGG - chr2_1:61531611-61531630 Msa0215980:intron 30.0%
ATTCAGAAAACAAGTTCTCA+AGG + chr2_1:61531682-61531701 None:intergenic 30.0%
CATAAGTCAATATATGGATG+AGG - chr2_1:61531764-61531783 Msa0215980:intron 30.0%
TATAAGCTGAAAACAGCTTA+TGG + chr2_1:61531838-61531857 None:intergenic 30.0%
! TTGTTACCCTTTGGTTATTT+TGG - chr2_1:61532155-61532174 Msa0215980:intron 30.0%
CATATGCCAAAATAACCAAA+GGG + chr2_1:61532164-61532183 None:intergenic 30.0%
TCATATGCCAAAATAACCAA+AGG + chr2_1:61532165-61532184 None:intergenic 30.0%
! TGGTTCCTTTTGTAGTAATT+GGG + chr2_1:61532318-61532337 None:intergenic 30.0%
! TGCAAATTTTCCTTTCTTTG+TGG + chr2_1:61532515-61532534 None:intergenic 30.0%
AAAGAAAGGAAAATTTGCAG+TGG - chr2_1:61532516-61532535 Msa0215980:intron 30.0%
ATCACATTACATTGCTTATG+TGG - chr2_1:61532645-61532664 Msa0215980:intron 30.0%
TGAAATGCAAAAATATCCAC+AGG + chr2_1:61532787-61532806 None:intergenic 30.0%
!! TGTGGATATTTTTGCATTTC+AGG - chr2_1:61532786-61532805 Msa0215980:CDS 30.0%
GTGATAGGTTCCATATGATA+TGG + chr2_1:61526229-61526248 None:intergenic 35.0%
! CTAACAACCTCTCTTTTCAA+AGG - chr2_1:61526357-61526376 Msa0215980:three_prime_UTR 35.0%
ATATTGCTGAATTGGACCAA+AGG - chr2_1:61526633-61526652 Msa0215980:intron 35.0%
TATTGCTGAATTGGACCAAA+GGG - chr2_1:61526634-61526653 Msa0215980:intron 35.0%
TACATGTGAAGCAATAGTGA+AGG - chr2_1:61526722-61526741 Msa0215980:CDS 35.0%
ACATGTGAAGCAATAGTGAA+GGG - chr2_1:61526723-61526742 Msa0215980:CDS 35.0%
TTTCACTTAGCTATCTGAGA+AGG - chr2_1:61526936-61526955 Msa0215980:intron 35.0%
! TAGCTATCTGAGAAGGTATA+TGG - chr2_1:61526943-61526962 Msa0215980:intron 35.0%
TTATATTACAGTCAGTGGGA+TGG + chr2_1:61527181-61527200 None:intergenic 35.0%
! CTTCAGACTGAAAGTGTATT+TGG - chr2_1:61527230-61527249 Msa0215980:intron 35.0%
ACAGACATCAAACAATGACA+CGG + chr2_1:61527354-61527373 None:intergenic 35.0%
TCATTGTTTGATGTCTGTGT+TGG - chr2_1:61527356-61527375 Msa0215980:intron 35.0%
ATGTCATGTATTCCCTCATA+TGG + chr2_1:61527383-61527402 None:intergenic 35.0%
TATGAGGGAATACATGACAT+TGG - chr2_1:61527383-61527402 Msa0215980:intron 35.0%
ATGAGGGAATACATGACATT+GGG - chr2_1:61527384-61527403 Msa0215980:intron 35.0%
GCAAACTAAATGGTGAAAAG+AGG - chr2_1:61527570-61527589 Msa0215980:intron 35.0%
GTGAAAAGAGGTAACATGTA+TGG - chr2_1:61527582-61527601 Msa0215980:intron 35.0%
! TTTTCTTACTACTCGTCACT+TGG + chr2_1:61527645-61527664 None:intergenic 35.0%
AGTGACGAGTAGTAAGAAAA+TGG - chr2_1:61527645-61527664 Msa0215980:intron 35.0%
GTTGTCCTTTCCATTCTATA+CGG + chr2_1:61527887-61527906 None:intergenic 35.0%
CATCAAAATTGCTCAGTAGT+TGG + chr2_1:61528119-61528138 None:intergenic 35.0%
TATATCTTCTCCATCAACCA+CGG + chr2_1:61528184-61528203 None:intergenic 35.0%
!! AGAAGTTGATGTATTGCTCA+AGG - chr2_1:61528358-61528377 Msa0215980:intron 35.0%
!! GAAGTTGATGTATTGCTCAA+GGG - chr2_1:61528359-61528378 Msa0215980:intron 35.0%
CATACATCAAATGTTGACAC+TGG + chr2_1:61528533-61528552 None:intergenic 35.0%
CAGTGTCAACATTTGATGTA+TGG - chr2_1:61528531-61528550 Msa0215980:intron 35.0%
ACATCATTTGATCCCTAACT+TGG - chr2_1:61528594-61528613 Msa0215980:intron 35.0%
GAGGGGTTAGAAAATTTGTA+TGG + chr2_1:61528678-61528697 None:intergenic 35.0%
!! TAGATTCTTTTAGCACTGGA+GGG + chr2_1:61528696-61528715 None:intergenic 35.0%
!! ATAGATTCTTTTAGCACTGG+AGG + chr2_1:61528697-61528716 None:intergenic 35.0%
! TGCATAGATTCTTTTAGCAC+TGG + chr2_1:61528700-61528719 None:intergenic 35.0%
! ATTAGCGGACATTAAAGCAT+TGG - chr2_1:61528732-61528751 Msa0215980:intron 35.0%
TATATCTAGATGGTTACCTG+TGG + chr2_1:61528772-61528791 None:intergenic 35.0%
ACAGGTAACCATCTAGATAT+AGG - chr2_1:61528771-61528790 Msa0215980:intron 35.0%
GCAAACACTTTACTGTATCA+AGG + chr2_1:61528809-61528828 None:intergenic 35.0%
TATATGCTCTTTAGGCTGAA+CGG - chr2_1:61528855-61528874 Msa0215980:intron 35.0%
! TGTATTGGGCTTGGAAATTT+TGG + chr2_1:61528959-61528978 None:intergenic 35.0%
AACAATTTCTGTATTGGGCT+TGG + chr2_1:61528968-61528987 None:intergenic 35.0%
AGTTGGGGATATTATATTGC+AGG - chr2_1:61529124-61529143 Msa0215980:CDS 35.0%
GTCTTCACAAGGAATATCTA+TGG - chr2_1:61529295-61529314 Msa0215980:intron 35.0%
GGCTGTTTAATCAACAACTA+TGG - chr2_1:61529316-61529335 Msa0215980:intron 35.0%
GATATGCACAACTTTAGACA+GGG + chr2_1:61529372-61529391 None:intergenic 35.0%
AGATATGCACAACTTTAGAC+AGG + chr2_1:61529373-61529392 None:intergenic 35.0%
!!! TGGTTTTGTTGGGTTAAGTT+AGG - chr2_1:61529575-61529594 Msa0215980:intron 35.0%
!!! GGTTTTGTTGGGTTAAGTTA+GGG - chr2_1:61529576-61529595 Msa0215980:intron 35.0%
!! TTAAGTTGAGGCTAAACCAA+TGG + chr2_1:61529633-61529652 None:intergenic 35.0%
TAGCCTCAACTTAAAGTTTC+TGG - chr2_1:61529639-61529658 Msa0215980:intron 35.0%
!! TGTCCAGAAACTTTAAGTTG+AGG + chr2_1:61529645-61529664 None:intergenic 35.0%
ATTTGGAAAGACAGCCAAAA+TGG + chr2_1:61529717-61529736 None:intergenic 35.0%
AGAAGGTAGTCTGTAAAATG+AGG + chr2_1:61530025-61530044 None:intergenic 35.0%
AGGAAATGATTGTGTAATCG+TGG - chr2_1:61530070-61530089 Msa0215980:intron 35.0%
CGTAGTTTGAAGGTGAAAAT+TGG - chr2_1:61530241-61530260 Msa0215980:intron 35.0%
GTATCACACTTTAAGTACCT+TGG - chr2_1:61530283-61530302 Msa0215980:intron 35.0%
!! TACTTTTTATGACAGACCCA+AGG + chr2_1:61530303-61530322 None:intergenic 35.0%
TGGGTCTGTCATAAAAAGTA+CGG - chr2_1:61530303-61530322 Msa0215980:intron 35.0%
ACTATAGGATCTTAGTAGGA+TGG - chr2_1:61530345-61530364 Msa0215980:CDS 35.0%
TCTTAGTAGGATGGATAAAC+TGG - chr2_1:61530354-61530373 Msa0215980:CDS 35.0%
ATACAGCATTGCAAGTCTTA+TGG + chr2_1:61530449-61530468 None:intergenic 35.0%
! TGTGTATTTTTCCTTCACCA+AGG - chr2_1:61530622-61530641 Msa0215980:intron 35.0%
! TTTTTCCTTCACCAAGGTTT+TGG - chr2_1:61530628-61530647 Msa0215980:intron 35.0%
GAGTTAAATGACCAAAACCT+TGG + chr2_1:61530642-61530661 None:intergenic 35.0%
AGAACATGTCTTAGATAGTC+TGG - chr2_1:61530759-61530778 Msa0215980:intron 35.0%
TTATGATGTGTCAGTGAAAG+TGG - chr2_1:61530804-61530823 Msa0215980:intron 35.0%
GAATTCATTAGAGAAAGACG+TGG - chr2_1:61530855-61530874 Msa0215980:intron 35.0%
AAGAAAGTAGATCATATGGG+AGG - chr2_1:61530963-61530982 Msa0215980:intron 35.0%
ATATAGCAAACTTCACCTGA+TGG - chr2_1:61531111-61531130 Msa0215980:intron 35.0%
CGCATTCTTCTTATTCATTC+AGG - chr2_1:61531315-61531334 Msa0215980:intron 35.0%
TGAAATCTTAAATCCTGCAC+TGG + chr2_1:61531549-61531568 None:intergenic 35.0%
ATGGATGAGGCTATTTGAAT+TGG - chr2_1:61531777-61531796 Msa0215980:intron 35.0%
CTTATATTCATAAGCTCTCC+AGG - chr2_1:61531852-61531871 Msa0215980:intron 35.0%
TAAGTGCAAGAAAATCAAGG+AGG + chr2_1:61532091-61532110 None:intergenic 35.0%
AGCATAGAATTGTTACCCTT+TGG - chr2_1:61532146-61532165 Msa0215980:intron 35.0%
ACATATTGTGCTCATAGCAA+TGG - chr2_1:61532271-61532290 Msa0215980:intron 35.0%
TGGATCCCAATTACTACAAA+AGG - chr2_1:61532310-61532329 Msa0215980:intron 35.0%
! GTGGTTCCTTTTGTAGTAAT+TGG + chr2_1:61532319-61532338 None:intergenic 35.0%
! TCTTGTATCAGTTAGTGGAT+TGG - chr2_1:61532354-61532373 Msa0215980:intron 35.0%
!! CTTGTATCAGTTAGTGGATT+GGG - chr2_1:61532355-61532374 Msa0215980:intron 35.0%
!! TAGTGGATTGGGAAGATTAA+AGG - chr2_1:61532366-61532385 Msa0215980:intron 35.0%
TATTTCATTCTGGTCCAGAT+AGG - chr2_1:61532478-61532497 Msa0215980:intron 35.0%
GAAGTAAACACCACAAAGAA+AGG - chr2_1:61532502-61532521 Msa0215980:intron 35.0%
AGAGGTTGTTAGCATTGTTG+CGG + chr2_1:61526349-61526368 None:intergenic 40.0%
! TAAGGGTCCTTTGAAAAGAG+AGG + chr2_1:61526367-61526386 None:intergenic 40.0%
GTAACCTGAAGAAGTGGAAA+AGG + chr2_1:61526405-61526424 None:intergenic 40.0%
TAGAGAGTAACCTGAAGAAG+TGG + chr2_1:61526411-61526430 None:intergenic 40.0%
TGTATTTCTCCAACCCAACA+TGG - chr2_1:61526599-61526618 Msa0215980:intron 40.0%
CATGTGAAGCAATAGTGAAG+GGG - chr2_1:61526724-61526743 Msa0215980:CDS 40.0%
! AGCAATAGTGAAGGGGATTT+TGG - chr2_1:61526731-61526750 Msa0215980:CDS 40.0%
GAAACTTTACCCACACACTA+AGG - chr2_1:61526804-61526823 Msa0215980:intron 40.0%
TATGGAGATAAGCTGAAAGC+AGG - chr2_1:61526961-61526980 Msa0215980:intron 40.0%
CTTGTGAGACTATTTGACAC+AGG + chr2_1:61527017-61527036 None:intergenic 40.0%
TTCTACTTGGATGGAAACAC+AGG + chr2_1:61527143-61527162 None:intergenic 40.0%
ATCAAACAATGACACGGACA+CGG + chr2_1:61527348-61527367 None:intergenic 40.0%
TGAGGGAATACATGACATTG+GGG - chr2_1:61527385-61527404 Msa0215980:intron 40.0%
GAATACATGACATTGGGGTT+GGG - chr2_1:61527390-61527409 Msa0215980:intron 40.0%
AATACATGACATTGGGGTTG+GGG - chr2_1:61527391-61527410 Msa0215980:intron 40.0%
! CATGTTTTCACGGGCTTATA+TGG - chr2_1:61527417-61527436 Msa0215980:intron 40.0%
ATGATGAGTGGTAACATGTG+TGG - chr2_1:61527540-61527559 Msa0215980:CDS 40.0%
TGGAGATGTGGCAAACTAAA+TGG - chr2_1:61527560-61527579 Msa0215980:CDS 40.0%
CAGACATACTTTCAAGAGAC+TGG + chr2_1:61527608-61527627 None:intergenic 40.0%
AGTATGTCTGATAGTTGGCT+TGG - chr2_1:61527618-61527637 Msa0215980:intron 40.0%
GGTTAAGATGGGTCTTGATT+TGG - chr2_1:61527666-61527685 Msa0215980:intron 40.0%
GAAGAATGCCAAAGTATGCT+TGG - chr2_1:61527690-61527709 Msa0215980:CDS 40.0%
GTGTTAAAGACTTACACTCG+AGG - chr2_1:61527771-61527790 Msa0215980:intron 40.0%
ACTCGTCTGTTAGTGTTATG+TGG - chr2_1:61527809-61527828 Msa0215980:intron 40.0%
CTCGTCTGTTAGTGTTATGT+GGG - chr2_1:61527810-61527829 Msa0215980:intron 40.0%
TGAACGAAGACCGTATAGAA+TGG - chr2_1:61527874-61527893 Msa0215980:intron 40.0%
GAAGACCGTATAGAATGGAA+AGG - chr2_1:61527879-61527898 Msa0215980:intron 40.0%
!! AGAGTTATTATTGGTGCCAG+TGG - chr2_1:61528012-61528031 Msa0215980:intron 40.0%
AATTGCTCAGTAGTTGGGAA+GGG + chr2_1:61528113-61528132 None:intergenic 40.0%
AAATTGCTCAGTAGTTGGGA+AGG + chr2_1:61528114-61528133 None:intergenic 40.0%
AACGTCGACCAAATGATCAA+AGG + chr2_1:61528148-61528167 None:intergenic 40.0%
ATGTATTGCTCAAGGGAGTT+GGG - chr2_1:61528366-61528385 Msa0215980:intron 40.0%
AGTGAAGCATGTTCTTGAGA+TGG - chr2_1:61528409-61528428 Msa0215980:intron 40.0%
AATGGACGACAACCAAGTTA+GGG + chr2_1:61528609-61528628 None:intergenic 40.0%
AAATGGACGACAACCAAGTT+AGG + chr2_1:61528610-61528629 None:intergenic 40.0%
TAGCCTACAACGAAGTCAAA+TGG + chr2_1:61528627-61528646 None:intergenic 40.0%
!! AGATTCTTTTAGCACTGGAG+GGG + chr2_1:61528695-61528714 None:intergenic 40.0%
!! GACATTAAAGCATTGGCTCA+AGG - chr2_1:61528739-61528758 Msa0215980:intron 40.0%
!! ATTAAAGCATTGGCTCAAGG+AGG - chr2_1:61528742-61528761 Msa0215980:intron 40.0%
CTCAATGCCGAAATAACATC+TGG + chr2_1:61528923-61528942 None:intergenic 40.0%
!! CAGATGTTATTTCGGCATTG+AGG - chr2_1:61528921-61528940 Msa0215980:intron 40.0%
TTCTTGGTACAGGAATTGTC+AGG - chr2_1:61529096-61529115 Msa0215980:CDS 40.0%
TCTTGGTACAGGAATTGTCA+GGG - chr2_1:61529097-61529116 Msa0215980:CDS 40.0%
GAATTGTCAGGGAGAAAGTT+GGG - chr2_1:61529108-61529127 Msa0215980:CDS 40.0%
AATTGTCAGGGAGAAAGTTG+GGG - chr2_1:61529109-61529128 Msa0215980:CDS 40.0%
GGATCAGAAAAGTCTTCACA+AGG - chr2_1:61529284-61529303 Msa0215980:intron 40.0%
ATCAACAACTATGGCTGTCT+TGG - chr2_1:61529325-61529344 Msa0215980:intron 40.0%
AAAACCAGCTTGTAAGGTGA+GGG + chr2_1:61529562-61529581 None:intergenic 40.0%
!!! ACCTTACAAGCTGGTTTTGT+TGG - chr2_1:61529564-61529583 Msa0215980:intron 40.0%
!!! CCTTACAAGCTGGTTTTGTT+GGG - chr2_1:61529565-61529584 Msa0215980:intron 40.0%
CAACTATGTTGACGATCCAT+TGG - chr2_1:61529614-61529633 Msa0215980:intron 40.0%
! TAAAGTTTCTGGACATGACC+TGG - chr2_1:61529650-61529669 Msa0215980:intron 40.0%
ACTTTGTTACCTTGTTACCC+AGG - chr2_1:61529914-61529933 Msa0215980:intron 40.0%
CTTTGTTACCTTGTTACCCA+GGG - chr2_1:61529915-61529934 Msa0215980:intron 40.0%
GCAAGAAATTCTACAAGCTC+TGG + chr2_1:61529969-61529988 None:intergenic 40.0%
AATGTCGTCTCCAAATTTCG+AGG - chr2_1:61530121-61530140 Msa0215980:intron 40.0%
ATGTCGTCTCCAAATTTCGA+GGG - chr2_1:61530122-61530141 Msa0215980:intron 40.0%
! GGGTCTGTCATAAAAAGTAC+GGG - chr2_1:61530304-61530323 Msa0215980:intron 40.0%
TAGTAGGATGGATAAACTGG+AGG - chr2_1:61530357-61530376 Msa0215980:CDS 40.0%
! TTGCAAGTCTTATGGCCATA+CGG + chr2_1:61530441-61530460 None:intergenic 40.0%
AAAGAAAACCCTGTGTCATG+AGG - chr2_1:61530503-61530522 Msa0215980:intron 40.0%
TGAGGATGAGACTGTTAAGA+TGG - chr2_1:61530521-61530540 Msa0215980:intron 40.0%
AGACTGTTAAGATGGATGAG+TGG - chr2_1:61530529-61530548 Msa0215980:intron 40.0%
AATGACCAAAACCTTGGTGA+AGG + chr2_1:61530636-61530655 None:intergenic 40.0%
ACATTAGAGCTAAGGGTTGA+AGG + chr2_1:61530664-61530683 None:intergenic 40.0%
GCTCAACACATTAGAGCTAA+GGG + chr2_1:61530671-61530690 None:intergenic 40.0%
AGCTCAACACATTAGAGCTA+AGG + chr2_1:61530672-61530691 None:intergenic 40.0%
TTCATTAGAGAAAGACGTGG+TGG - chr2_1:61530858-61530877 Msa0215980:intron 40.0%
TGCTTATGGTTGTAGTACAC+TGG - chr2_1:61531655-61531674 Msa0215980:intron 40.0%
!!! GCAGGAACAGATTTTGGAAT+AGG + chr2_1:61531705-61531724 None:intergenic 40.0%
! CACTATGCAGGAACAGATTT+TGG + chr2_1:61531711-61531730 None:intergenic 40.0%
CAAGCATCATTTCACTATGC+AGG + chr2_1:61531723-61531742 None:intergenic 40.0%
CTGCATAGTGAAATGATGCT+TGG - chr2_1:61531721-61531740 Msa0215980:intron 40.0%
ATGGCAATGTACGTATCAAC+TGG - chr2_1:61532290-61532309 Msa0215980:intron 40.0%
AAAGGAACCACAATCAAGAG+TGG - chr2_1:61532328-61532347 Msa0215980:intron 40.0%
AAGATCTCCACTCTTGATTG+TGG + chr2_1:61532338-61532357 None:intergenic 40.0%
GGAGATCTTGTATCAGTTAG+TGG - chr2_1:61532349-61532368 Msa0215980:intron 40.0%
TGGTGTTTACTTCTCCTATC+TGG + chr2_1:61532495-61532514 None:intergenic 40.0%
TGGAATACCAAGTTCAAACC+TGG - chr2_1:61532665-61532684 Msa0215980:CDS 40.0%
TTCTCTTCCAGGTTTGAACT+TGG + chr2_1:61532675-61532694 None:intergenic 40.0%
CCATGGCGAATATGAGTGAT+AGG + chr2_1:61526244-61526263 None:intergenic 45.0%
CCTATCACTCATATTCGCCA+TGG - chr2_1:61526241-61526260 Msa0215980:three_prime_UTR 45.0%
GGAGAGAAGATGAGAGGTAA+GGG + chr2_1:61526384-61526403 None:intergenic 45.0%
AGGAGAGAAGATGAGAGGTA+AGG + chr2_1:61526385-61526404 None:intergenic 45.0%
GGAAAAGGAGAGAAGATGAG+AGG + chr2_1:61526390-61526409 None:intergenic 45.0%
! CTCTCCTTTTCCACTTCTTC+AGG - chr2_1:61526398-61526417 Msa0215980:three_prime_UTR 45.0%
TCATCATCACCATGTTGGGT+TGG + chr2_1:61526611-61526630 None:intergenic 45.0%
!! GAAGGGGATTTTGGTACTGA+AGG - chr2_1:61526740-61526759 Msa0215980:CDS 45.0%
CAAACAGAGCCTTAGTGTGT+GGG + chr2_1:61526816-61526835 None:intergenic 45.0%
TTGGATGGAAACACAGGTCA+TGG + chr2_1:61527137-61527156 None:intergenic 45.0%
!! ATTTGGTGTCCGACTTGAGT+TGG - chr2_1:61527247-61527266 Msa0215980:intron 45.0%
! TGTCTGTGTTGGTCCATATG+AGG - chr2_1:61527367-61527386 Msa0215980:intron 45.0%
! GTCTGTGTTGGTCCATATGA+GGG - chr2_1:61527368-61527387 Msa0215980:intron 45.0%
GGAATACATGACATTGGGGT+TGG - chr2_1:61527389-61527408 Msa0215980:intron 45.0%
! GTTGGGGAGACATGTTTTCA+CGG - chr2_1:61527407-61527426 Msa0215980:intron 45.0%
! TTGGGGAGACATGTTTTCAC+GGG - chr2_1:61527408-61527427 Msa0215980:intron 45.0%
GAAATCATGATTGTGAGCGG+TGG - chr2_1:61527481-61527500 Msa0215980:intron 45.0%
TGGTAACATGTGTGGAGATG+TGG - chr2_1:61527548-61527567 Msa0215980:CDS 45.0%
AATGCTCAACTGCCACTCAA+CGG + chr2_1:61527721-61527740 None:intergenic 45.0%
!! GCAGTTGAGCATTGAATGCT+CGG - chr2_1:61527728-61527747 Msa0215980:CDS 45.0%
!! CAGTTGAGCATTGAATGCTC+GGG - chr2_1:61527729-61527748 Msa0215980:intron 45.0%
! TCGGGAAAGGTTTTTGTACG+AGG - chr2_1:61527747-61527766 Msa0215980:intron 45.0%
ACACTCGAGGATGAGATTGT+TGG - chr2_1:61527784-61527803 Msa0215980:intron 45.0%
TGTTATGTGGGCGTGAATGA+AGG - chr2_1:61527822-61527841 Msa0215980:intron 45.0%
GATTTAGATAGGGTGCAGAG+TGG - chr2_1:61527930-61527949 Msa0215980:intron 45.0%
! GTGGATTAATGTGGTACCCT+TGG - chr2_1:61527949-61527968 Msa0215980:intron 45.0%
TGCTGCACATACATAACCAC+TGG + chr2_1:61528031-61528050 None:intergenic 45.0%
ATTGCTCAGTAGTTGGGAAG+GGG + chr2_1:61528112-61528131 None:intergenic 45.0%
!!! CGTTTTTTGAAGAAGCACCG+TGG - chr2_1:61528164-61528183 Msa0215980:intron 45.0%
GATGTATTGCTCAAGGGAGT+TGG - chr2_1:61528365-61528384 Msa0215980:intron 45.0%
TGTATTGCTCAAGGGAGTTG+GGG - chr2_1:61528367-61528386 Msa0215980:intron 45.0%
ATTCTAGACTGTCACAAGCC+TGG - chr2_1:61528471-61528490 Msa0215980:intron 45.0%
! CGTCCATTTGACTTCGTTGT+AGG - chr2_1:61528621-61528640 Msa0215980:intron 45.0%
!! GGAGAGCACCTATATCTAGA+TGG + chr2_1:61528782-61528801 None:intergenic 45.0%
CTGGATGTCCAACAGAAATC+CGG + chr2_1:61528883-61528902 None:intergenic 45.0%
GGATCACTTGTCAGTTCATC+TGG + chr2_1:61528902-61528921 None:intergenic 45.0%
CATGAGAGCAAGGTTCAAAC+TGG + chr2_1:61529058-61529077 None:intergenic 45.0%
CAGTTTGAACCTTGCTCTCA+TGG - chr2_1:61529056-61529075 Msa0215980:intron 45.0%
GACTTCCTTGGCTCAATTCT+TGG - chr2_1:61529080-61529099 Msa0215980:CDS 45.0%
CTGTACCAAGAATTGAGCCA+AGG + chr2_1:61529088-61529107 None:intergenic 45.0%
CTTGGCTCAATTCTTGGTAC+AGG - chr2_1:61529086-61529105 Msa0215980:CDS 45.0%
GGAATTGTCAGGGAGAAAGT+TGG - chr2_1:61529107-61529126 Msa0215980:CDS 45.0%
! TGTGCACAGAGCACAGTTTT+AGG + chr2_1:61529182-61529201 None:intergenic 45.0%
ACTGTGCTCTGTGCACAAAA+TGG - chr2_1:61529185-61529204 Msa0215980:intron 45.0%
AAACCAGCTTGTAAGGTGAG+GGG + chr2_1:61529561-61529580 None:intergenic 45.0%
CAAAACCAGCTTGTAAGGTG+AGG + chr2_1:61529563-61529582 None:intergenic 45.0%
CCCAACAAAACCAGCTTGTA+AGG + chr2_1:61529568-61529587 None:intergenic 45.0%
AGAATTTCTTGCGTCAGCAC+TGG - chr2_1:61529977-61529996 Msa0215980:CDS 45.0%
ATTCCTGCACCCTCGAAATT+TGG + chr2_1:61530134-61530153 None:intergenic 45.0%
TGCTGTATGCAGCTGAATGT+TGG - chr2_1:61530461-61530480 Msa0215980:intron 45.0%
GCTGTATGCAGCTGAATGTT+GGG - chr2_1:61530462-61530481 Msa0215980:intron 45.0%
AGTCTCATCCTCATGACACA+GGG + chr2_1:61530514-61530533 None:intergenic 45.0%
ATTGTGTTCCTAAAGGGGGT+TGG + chr2_1:61530697-61530716 None:intergenic 45.0%
! GAGTGTGGCTTGTAAAGTGA+GGG + chr2_1:61531263-61531282 None:intergenic 45.0%
! TGAGTGTGGCTTGTAAAGTG+AGG + chr2_1:61531264-61531283 None:intergenic 45.0%
! GGTATCTTGGTGCAAGTTAC+AGG + chr2_1:61531352-61531371 None:intergenic 45.0%
CTCTTGATTATGAACCGCCA+AGG - chr2_1:61531380-61531399 Msa0215980:intron 45.0%
CGAAGCTAGTTGACATGATC+AGG - chr2_1:61531573-61531592 Msa0215980:intron 45.0%
CAAGAAAATCAAGGAGGAGC+AGG + chr2_1:61532085-61532104 None:intergenic 45.0%
GAAGGCCAAGTTCATCTGAA+CGG - chr2_1:61532409-61532428 Msa0215980:intron 45.0%
CAAAGCCGTTCAGATGAACT+TGG + chr2_1:61532417-61532436 None:intergenic 45.0%
CAAGTTCATCTGAACGGCTT+TGG - chr2_1:61532415-61532434 Msa0215980:intron 45.0%
GTTCTTTGCTCTTCTCTTCC+AGG + chr2_1:61532686-61532705 None:intergenic 45.0%
TACACTCAAGTACAGTCCTG+TGG - chr2_1:61532768-61532787 Msa0215980:CDS 45.0%
!!! TTTTTTATAAAATAAATTGT+GGG - chr2_1:61526514-61526533 Msa0215980:exon 5.0%
!! AATAAACAAAAATATATATT+TGG + chr2_1:61529734-61529753 None:intergenic 5.0%
!! CAATTAAAAAAAAAAAAAAT+TGG + chr2_1:61531471-61531490 None:intergenic 5.0%
! GCTGCAACTACCACTAGCTT+TGG - chr2_1:61526263-61526282 Msa0215980:three_prime_UTR 50.0%
CCAAGCAGTTCCAAAGCTAG+TGG + chr2_1:61526276-61526295 None:intergenic 50.0%
!! CCACTAGCTTTGGAACTGCT+TGG - chr2_1:61526273-61526292 Msa0215980:three_prime_UTR 50.0%
CCAAACAGAGCCTTAGTGTG+TGG + chr2_1:61526817-61526836 None:intergenic 50.0%
CCACACACTAAGGCTCTGTT+TGG - chr2_1:61526814-61526833 Msa0215980:intron 50.0%
AGTCGGACACCAACTCAAGT+CGG + chr2_1:61527259-61527278 None:intergenic 50.0%
ATGATTGTGAGCGGTGGTAC+TGG - chr2_1:61527487-61527506 Msa0215980:intron 50.0%
CGGGAACACCAAGCATACTT+TGG + chr2_1:61527701-61527720 None:intergenic 50.0%
ATGCTCAACTGCCACTCAAC+GGG + chr2_1:61527720-61527739 None:intergenic 50.0%
!! GAGCATTGAATGCTCGGGAA+AGG - chr2_1:61527734-61527753 Msa0215980:intron 50.0%
!! GGGTGCAGAGTGGATTAATG+TGG - chr2_1:61527940-61527959 Msa0215980:intron 50.0%
CTCTTGACGATACAGGAGCA+AGG + chr2_1:61527996-61528015 None:intergenic 50.0%
!! TGAAGAAGCACCGTGGTTGA+TGG - chr2_1:61528171-61528190 Msa0215980:intron 50.0%
GCTTTCTGACGTGCAGATTC+AGG - chr2_1:61528305-61528324 Msa0215980:intron 50.0%
AGGAAGTCACCATGAGAGCA+AGG + chr2_1:61529068-61529087 None:intergenic 50.0%
TGCTCTCATGGTGACTTCCT+TGG - chr2_1:61529068-61529087 Msa0215980:intron 50.0%
CTTGTTACCCAGGGAGAACA+GGG - chr2_1:61529924-61529943 Msa0215980:intron 50.0%
! TCTTGCGTCAGCACTGGATA+AGG - chr2_1:61529983-61530002 Msa0215980:CDS 50.0%
! TCTCCAAATTTCGAGGGTGC+AGG - chr2_1:61530128-61530147 Msa0215980:intron 50.0%
CAGTCTCATCCTCATGACAC+AGG + chr2_1:61530515-61530534 None:intergenic 50.0%
AGTCTGGACATGTGTCAGAG+AGG - chr2_1:61530775-61530794 Msa0215980:intron 50.0%
GAACCGCCAAGGTAACATCT+TGG - chr2_1:61531391-61531410 Msa0215980:intron 50.0%
! GCTGGTTTCGTAAGCTATCC+TGG + chr2_1:61531873-61531892 None:intergenic 50.0%
GCTAGTGGTAGTTGCAGCCA+TGG + chr2_1:61526261-61526280 None:intergenic 55.0%
GGTACAAGCAACCGAGCAAG+TGG - chr2_1:61527508-61527527 Msa0215980:CDS 55.0%
!! TGCTTGGTGTTCCCGTTGAG+TGG - chr2_1:61527706-61527725 Msa0215980:CDS 55.0%
GGCTCAAGGAGGTTATCCAC+AGG - chr2_1:61528753-61528772 Msa0215980:intron 55.0%
CTCTTTAGGCTGAACGGTGC+CGG - chr2_1:61528861-61528880 Msa0215980:intron 55.0%
! GAACGGTGCCGGATTTCTGT+TGG - chr2_1:61528872-61528891 Msa0215980:intron 55.0%
ACACCCCTCACCTTACAAGC+TGG - chr2_1:61529555-61529574 Msa0215980:intron 55.0%
CCTGTTCTCCCTGGGTAACA+AGG + chr2_1:61529926-61529945 None:intergenic 55.0%
CCTTGTTACCCAGGGAGAAC+AGG - chr2_1:61529923-61529942 Msa0215980:intron 55.0%
TGAGCTAGCCAACCCCCTTT+AGG - chr2_1:61530686-61530705 Msa0215980:CDS 55.0%
CTGGACATGTGTCAGAGAGG+AGG - chr2_1:61530778-61530797 Msa0215980:intron 55.0%
GGGCCAAGATGTTACCTTGG+CGG + chr2_1:61531397-61531416 None:intergenic 55.0%
CCAGGGCCAAGATGTTACCT+TGG + chr2_1:61531400-61531419 None:intergenic 55.0%
CCAAGGTAACATCTTGGCCC+TGG - chr2_1:61531397-61531416 Msa0215980:intron 55.0%
GTTGATGCAGTAGCCAGTGC+AGG - chr2_1:61531533-61531552 Msa0215980:intron 55.0%
AAGCAACCGAGCAAGTGGCG+TGG - chr2_1:61527513-61527532 Msa0215980:CDS 60.0%
AGCAACCGAGCAAGTGGCGT+GGG - chr2_1:61527514-61527533 Msa0215980:CDS 60.0%
ATCAGCCCACGCCACTTGCT+CGG + chr2_1:61527522-61527541 None:intergenic 60.0%
! TGGCGTGGGCTGATGATGAG+TGG - chr2_1:61527528-61527547 Msa0215980:CDS 60.0%
CTGAGCACCCTGTTCTCCCT+GGG + chr2_1:61529934-61529953 None:intergenic 60.0%
TCTGAGCACCCTGTTCTCCC+TGG + chr2_1:61529935-61529954 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 61526217 61532867 61526217 ID=Msa0215980;Name=Msa0215980
chr2_1 mRNA 61526217 61532867 61526217 ID=Msa0215980-mRNA-1;Parent=Msa0215980;Name=Msa0215980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=43|1|1|1|1|1|10|309|325
chr2_1 exon 61526217 61526588 61526217 ID=Msa0215980-mRNA-1:exon:17001;Parent=Msa0215980-mRNA-1
chr2_1 exon 61526697 61526796 61526697 ID=Msa0215980-mRNA-1:exon:17000;Parent=Msa0215980-mRNA-1
chr2_1 exon 61527490 61527588 61527490 ID=Msa0215980-mRNA-1:exon:16999;Parent=Msa0215980-mRNA-1
chr2_1 exon 61527683 61527747 61527683 ID=Msa0215980-mRNA-1:exon:16998;Parent=Msa0215980-mRNA-1
chr2_1 exon 61529080 61529148 61529080 ID=Msa0215980-mRNA-1:exon:16997;Parent=Msa0215980-mRNA-1
chr2_1 exon 61529939 61530044 61529939 ID=Msa0215980-mRNA-1:exon:16996;Parent=Msa0215980-mRNA-1
chr2_1 exon 61530142 61530215 61530142 ID=Msa0215980-mRNA-1:exon:16995;Parent=Msa0215980-mRNA-1
chr2_1 exon 61530310 61530441 61530310 ID=Msa0215980-mRNA-1:exon:16994;Parent=Msa0215980-mRNA-1
chr2_1 exon 61530654 61530763 61530654 ID=Msa0215980-mRNA-1:exon:16993;Parent=Msa0215980-mRNA-1
chr2_1 exon 61532665 61532867 61532665 ID=Msa0215980-mRNA-1:exon:16992;Parent=Msa0215980-mRNA-1
chr2_1 five_prime_UTR 61532825 61532867 61532825 ID=Msa0215980-mRNA-1:five_prime_utr;Parent=Msa0215980-mRNA-1
chr2_1 CDS 61532665 61532824 61532665 ID=Msa0215980-mRNA-1:cds;Parent=Msa0215980-mRNA-1
chr2_1 CDS 61530654 61530763 61530654 ID=Msa0215980-mRNA-1:cds;Parent=Msa0215980-mRNA-1
chr2_1 CDS 61530310 61530441 61530310 ID=Msa0215980-mRNA-1:cds;Parent=Msa0215980-mRNA-1
chr2_1 CDS 61530142 61530215 61530142 ID=Msa0215980-mRNA-1:cds;Parent=Msa0215980-mRNA-1
chr2_1 CDS 61529939 61530044 61529939 ID=Msa0215980-mRNA-1:cds;Parent=Msa0215980-mRNA-1
chr2_1 CDS 61529080 61529148 61529080 ID=Msa0215980-mRNA-1:cds;Parent=Msa0215980-mRNA-1
chr2_1 CDS 61527683 61527747 61527683 ID=Msa0215980-mRNA-1:cds;Parent=Msa0215980-mRNA-1
chr2_1 CDS 61527490 61527588 61527490 ID=Msa0215980-mRNA-1:cds;Parent=Msa0215980-mRNA-1
chr2_1 CDS 61526697 61526796 61526697 ID=Msa0215980-mRNA-1:cds;Parent=Msa0215980-mRNA-1
chr2_1 CDS 61526526 61526588 61526526 ID=Msa0215980-mRNA-1:cds;Parent=Msa0215980-mRNA-1
chr2_1 three_prime_UTR 61526217 61526525 61526217 ID=Msa0215980-mRNA-1:three_prime_utr;Parent=Msa0215980-mRNA-1
Gene Sequence

>Msa0215980

ATGGCTGCAACTACCACTAGCTTTGGAACTGCTTGGTGTCTTAGAAGAGTAACTCAAGCTTTTGCACTTTCTCATTCTCATAATCTCCGCAACAATGCTAACAACCTCTCTTTTCAAAGGACCCTTACCTCTCATCTTCTCTCCTTTTCCACTTCTTCAGATTCAGGTGCAAGCACGACAGTGCATGCTTCAAAACGAGAAGTTGATGTATTGCTCAAGGGAGTTGGGGAGAAAAGTGTAGAAAATGAAGTGAAGCATGTTCTTGAGATGGCTAGACGAGCATCATTAAAACGAGAGATTCTCCATACAAATTTTCTAACCCCTCCAGTGCTAAAAGAATCTATGCAAGTATTGGAAAAATTAGCGGACATTAAAGCATTGGCTCAAGGAGGTTATCCACAGGCTGAACGGTGCCGGATTTCTGTTGGACATCCAGATGAACTGACAAGTGATCCAGATGTTATTTCGGCATTGAGCATTACAGGGAACTTCCAGTTTGAACCTTGCTCTCATGGTGACTTCCTTGGCTCAATTCTTGGTACAGGAATTGTCAGGGAGAAAGTTGGGGATATTATATTGCAGGGAGAACAGGGTGCTCAGATAATTGTTGTACCAGAGCTTGTAGAATTTCTTGCGTCAGCACTGGATAAGGTTCGTAATGTTCCTGTAACTTGCACCAAGATACCATTAATTTCTCTTGATTATGAACCGCCAAGAACAAAATCATTCAAAACTATAGAAGCGTCACTAAGAGTTGATGCAGTAGCCAGTGCAGGATTTAAGATTTCACGTTCGAAGCTAGTTGACATGATCAGCAATGGCAATGTACGTATCAACTGGATCCCAATTACTACAAAAGGAACCACAATCAAGAGTGGAGATCTTGTATCAGTTAGTGGATTGGGAAGATTAAAGATAGGAGAAGTAAACACCACAAAGAAAGGAAAATTTGCAGTGGAACTCATTCGATATTTGTAG

Protein sequence

>Msa0215980

MAATTTSFGTAWCLRRVTQAFALSHSHNLRNNANNLSFQRTLTSHLLSFSTSSDSGASTTVHASKREVDVLLKGVGEKSVENEVKHVLEMARRASLKREILHTNFLTPPVLKESMQVLEKLADIKALAQGGYPQAERCRISVGHPDELTSDPDVISALSITGNFQFEPCSHGDFLGSILGTGIVREKVGDIILQGEQGAQIIVVPELVEFLASALDKVRNVPVTCTKIPLISLDYEPPRTKSFKTIEASLRVDAVASAGFKISRSKLVDMISNGNVRINWIPITTKGTTIKSGDLVSVSGLGRLKIGEVNTTKKGKFAVELIRYL*