AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1058980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1058980 MtrunA17_Chr7g0241071 99.270 411 3 0 1 411 1 411 0.0 837
Msa1058980 MtrunA17_Chr2g0278581 50.877 342 150 2 71 411 11 335 1.09e-116 343
Msa1058980 MtrunA17_Chr6g0463901 50.000 342 153 2 71 411 11 335 3.15e-114 337
Msa1058980 MtrunA17_Chr4g0049821 44.970 338 163 7 73 409 70 385 1.62e-93 286
Msa1058980 MtrunA17_Chr3g0113101 28.720 289 171 9 125 410 115 371 7.27e-20 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1058980 AT3G54050.2 82.532 395 61 3 21 411 27 417 0.0 659
Msa1058980 AT3G54050.1 82.532 395 61 3 21 411 27 417 0.0 659
Msa1058980 AT1G43670.1 49.415 342 155 3 71 411 11 335 1.38e-112 333
Msa1058980 AT5G64380.1 47.059 323 147 7 91 409 89 391 6.63e-90 278
Msa1058980 AT3G55800.1 29.341 334 179 15 89 410 90 378 1.93e-21 95.9

Find 114 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTCTATGGTGGCATTTA+TGG 0.100293 7_2:-44179744 Msa1058980:CDS
CATTGAGGAAATGTGATTTA+AGG 0.224041 7_2:+44178744 None:intergenic
CCAATATACCTTGCTGAATA+AGG 0.237180 7_2:+44179795 None:intergenic
ATGTAAACAGATTGCTTCTT+TGG 0.237903 7_2:-44181380 Msa1058980:CDS
CGTAATGGTTTGTGATACTA+TGG 0.250976 7_2:+44181804 None:intergenic
GCTAATATTTCTAACCTTAC+TGG 0.275094 7_2:-44181349 Msa1058980:CDS
CCTTATTCAGCAAGGTATAT+TGG 0.303464 7_2:-44179795 Msa1058980:CDS
GCAGTAGAAGAGAGTTATTC+AGG 0.314426 7_2:-44180788 Msa1058980:CDS
ATGAAGGGAATTACAAGTTA+TGG 0.331893 7_2:-44179875 Msa1058980:CDS
GTGGTCTTTGATCCACTTGA+TGG 0.340444 7_2:-44180755 Msa1058980:CDS
GGACACTGCAGCATCGATAT+TGG 0.345508 7_2:+44180727 None:intergenic
ATGTTCTATGAAACTTGTTA+TGG 0.349558 7_2:-44178924 Msa1058980:three_prime_UTR
AGCTTATAACATTGACTAGT+TGG 0.352602 7_2:-44181474 Msa1058980:CDS
CATAGACGTGAAGGAGAATA+AGG 0.352701 7_2:+44181634 None:intergenic
AGCAAGGTATATTGGTAGTT+TGG 0.355656 7_2:-44179787 Msa1058980:CDS
GCTGCTAGAAGGTTGCTTCC+TGG 0.357718 7_2:+44180047 None:intergenic
CATGGATGGATTGTGTTCTA+AGG 0.361431 7_2:+44181754 None:intergenic
AATGAGTTTCATTGTAGAAC+AGG 0.377561 7_2:-44179661 Msa1058980:CDS
TTCACATTAGATCCAATGTA+TGG 0.380685 7_2:-44179960 Msa1058980:CDS
AATCTCCAAATACCGAAATC+AGG 0.381783 7_2:-44179915 Msa1058980:CDS
TCTAACCTTACTGGTGTTCA+AGG 0.382052 7_2:-44181340 Msa1058980:CDS
CTCAAGGAACCAGGTTCTAA+TGG 0.388835 7_2:-44179822 Msa1058980:CDS
AGAAAGCATGTGAGTGGCTC+TGG 0.395778 7_2:-44181559 Msa1058980:CDS
TTCCATAGGACACTGCTCTA+TGG 0.398346 7_2:-44179756 Msa1058980:CDS
GTAATCTTTGTTCTAACAAT+CGG 0.407535 7_2:-44179999 Msa1058980:CDS
AAAATATATTCTTTCAATGA+AGG 0.413500 7_2:-44179891 Msa1058980:CDS
TCAGCAAGACACTCATCATT+GGG 0.420252 7_2:+44180677 None:intergenic
TGAAGGGAATTACAAGTTAT+GGG 0.423627 7_2:-44179874 Msa1058980:CDS
GTCAGCAAGACACTCATCAT+TGG 0.424092 7_2:+44180676 None:intergenic
TTGTTGAAGCAAGAACAAAC+AGG 0.433134 7_2:-44181451 Msa1058980:CDS
CAAGGTGCTGTAAATATTCA+AGG 0.437548 7_2:-44181322 Msa1058980:CDS
CTGAAGGAAAAGAGATTGTA+AGG 0.445577 7_2:+44181779 None:intergenic
TTTGCAATAGAGAAATGAAA+AGG 0.448596 7_2:+44178860 None:intergenic
GTAGAACAGGCTGGTGGAAA+AGG 0.450058 7_2:-44179648 Msa1058980:CDS
TGCAGTAACCAGCTGCTAGA+AGG 0.454204 7_2:+44180036 None:intergenic
TCAAATTGTTTGAGGTCAAG+TGG 0.463529 7_2:-44180854 Msa1058980:CDS
TTGAGGTCAAGTGGGAGGAC+AGG 0.467538 7_2:-44180845 Msa1058980:CDS
AGAGATTGTAAGGTTCGTAA+TGG 0.469758 7_2:+44181789 None:intergenic
CATTGGGAGCACAGAGGAAG+TGG 0.471616 7_2:-44179010 Msa1058980:CDS
AGGTATTCTCAAATTGTTTG+AGG 0.481726 7_2:-44180862 Msa1058980:CDS
AACGTGTTCCACTGTACATT+GGG 0.482493 7_2:-44179026 Msa1058980:CDS
TGTTCTACAATGAAACTCAT+TGG 0.490655 7_2:+44179663 None:intergenic
TGTAAGTAAAGTATGCATAA+AGG 0.493336 7_2:-44178723 Msa1058980:three_prime_UTR
CTAGAAGGTTGCTTCCTGGT+TGG 0.494022 7_2:+44180051 None:intergenic
TGCATACTTTACTTACATTG+AGG 0.501124 7_2:+44178729 None:intergenic
AGGTATATTGGTAGTTTGGT+AGG 0.501227 7_2:-44179783 Msa1058980:CDS
GTTTGGTAGGTGATTTCCAT+AGG 0.501579 7_2:-44179770 Msa1058980:CDS
AATGTGATTTAAGGAAGGCT+TGG 0.502137 7_2:+44178753 None:intergenic
AAAGTAAGAATGGAAAGCTT+AGG 0.504829 7_2:-44179704 Msa1058980:CDS
CAGCACCTTGAACACCAGTA+AGG 0.507446 7_2:+44181335 None:intergenic
GGAGAAAGTTGAAAAGTACT+TGG 0.510521 7_2:-44178989 Msa1058980:CDS
CACCATAGAGCAGTGTCCTA+TGG 0.514948 7_2:+44179754 None:intergenic
AGGGACAAGAAAAGTAAGAA+TGG 0.516753 7_2:-44179714 Msa1058980:CDS
TATAGGCAACAACACCTTAG+TGG 0.518250 7_2:+44178694 None:intergenic
AAATATATTCTTTCAATGAA+GGG 0.518944 7_2:-44179890 Msa1058980:CDS
TTGCAATAGAGAAATGAAAA+GGG 0.521453 7_2:+44178861 None:intergenic
ATCGATGCTGCAGTGTCCAC+CGG 0.534943 7_2:-44180722 Msa1058980:CDS
TGAGGTCAAGTGGGAGGACA+GGG 0.535207 7_2:-44180844 Msa1058980:CDS
GGAAGCAACCTTCTAGCAGC+TGG 0.536054 7_2:-44180044 Msa1058980:CDS
GAGGAAATGTGATTTAAGGA+AGG 0.537049 7_2:+44178748 None:intergenic
CATAAAGGTCTTAACCACTA+AGG 0.541095 7_2:-44178708 Msa1058980:three_prime_UTR
CAACGTGTTCCACTGTACAT+TGG 0.541762 7_2:-44179027 Msa1058980:CDS
AAAACAAATTCCCCATACAT+TGG 0.543202 7_2:+44179948 None:intergenic
CAAATTGTTTGAGGTCAAGT+GGG 0.545156 7_2:-44180853 Msa1058980:CDS
ATGATATGAAGAAGATAAGT+GGG 0.546728 7_2:-44181829 Msa1058980:five_prime_UTR
TAAGGTTTGCCATTAGAACC+TGG 0.547362 7_2:+44179813 None:intergenic
TAACTCTCTTCTACTGCCAC+TGG 0.547536 7_2:+44180794 None:intergenic
GTGGCATTTATGGATACCCT+AGG 0.549002 7_2:-44179734 Msa1058980:CDS
AATGATATGAAGAAGATAAG+TGG 0.549360 7_2:-44181830 Msa1058980:five_prime_UTR
TCACATTAGATCCAATGTAT+GGG 0.550781 7_2:-44179959 Msa1058980:CDS
ATCTCCAAATACCGAAATCA+GGG 0.551752 7_2:-44179914 Msa1058980:CDS
CCAATGGTTCTGTTCTGCCA+CGG 0.552814 7_2:+44181873 None:intergenic
ACTTGATGTTGTCTCAAATG+AGG 0.561343 7_2:-44181284 Msa1058980:intron
AGTTTCATTGTAGAACAGGC+TGG 0.569307 7_2:-44179657 Msa1058980:CDS
GTAATGGTTTGTGATACTAT+GGG 0.570536 7_2:+44181805 None:intergenic
GACAGGGATTATAGCATCAG+AGG 0.573560 7_2:-44180828 Msa1058980:CDS
CCGTGGCAGAACAGAACCAT+TGG 0.578712 7_2:-44181873 Msa1058980:five_prime_UTR
GCTGGTGGAAAAGGTTCAGA+TGG 0.579726 7_2:-44179639 Msa1058980:CDS
ATTGTGAATGTGTGCCAACC+AGG 0.580359 7_2:-44180065 Msa1058980:CDS
CATTCGACACTTACTTCGGT+GGG 0.582856 7_2:+44179591 None:intergenic
TGATGAATGAGTTGCATGGA+TGG 0.583559 7_2:+44181740 None:intergenic
TCATTCGACACTTACTTCGG+TGG 0.583933 7_2:+44179590 None:intergenic
ATCGATGATCTCAAGGAACC+AGG 0.584338 7_2:-44179831 Msa1058980:CDS
TGCTGTAAATATTCAAGGGG+AGG 0.587683 7_2:-44181317 Msa1058980:CDS
GAAATACATCGATGATCTCA+AGG 0.591810 7_2:-44179838 Msa1058980:CDS
TCGTGTCGAAGACACAAAGT+TGG 0.592625 7_2:+44181605 None:intergenic
CTCTGGAGGAGTGAGATGCA+TGG 0.594547 7_2:-44181542 Msa1058980:CDS
AAGCATGTGAGTGGCTCTGG+AGG 0.594581 7_2:-44181556 Msa1058980:CDS
AAGGTGCTGTAAATATTCAA+GGG 0.595137 7_2:-44181321 Msa1058980:CDS
TTTGTTCTAACAATCGGCAA+AGG 0.598066 7_2:-44179993 Msa1058980:CDS
ATTGTGTTCTAAGGTACTGA+AGG 0.600065 7_2:+44181763 None:intergenic
CACATTAGATCCAATGTATG+GGG 0.608841 7_2:-44179958 Msa1058980:CDS
TTCATTGTAGAACAGGCTGG+TGG 0.611027 7_2:-44179654 Msa1058980:CDS
TCGAAGACACAAAGTTGGAA+AGG 0.614334 7_2:+44181610 None:intergenic
TGTTGAAGCAAGAACAAACA+GGG 0.616718 7_2:-44181450 Msa1058980:CDS
AGAGGAAGAAGATGTGCCAG+TGG 0.616813 7_2:-44180810 Msa1058980:CDS
TGGAAAGGACATAGACGTGA+AGG 0.619746 7_2:+44181625 None:intergenic
CATAGGACACTGCTCTATGG+TGG 0.623379 7_2:-44179753 Msa1058980:CDS
GGCTGTTGGTGAAGTAGCTG+CGG 0.625568 7_2:-44181521 Msa1058980:CDS
ATGGCAAACCTTATTCAGCA+AGG 0.633183 7_2:-44179803 Msa1058980:CDS
TCAAGAAGAAAGCATGTGAG+TGG 0.640509 7_2:-44181565 Msa1058980:CDS
ATTGTTTGAGGTCAAGTGGG+AGG 0.641340 7_2:-44180850 Msa1058980:CDS
ATATTGGATGAACCATCAAG+TGG 0.643892 7_2:+44180743 None:intergenic
GGAGTGAGATGCATGGCTGT+TGG 0.653986 7_2:-44181535 Msa1058980:CDS
TCTGTGCTCCCAATGTACAG+TGG 0.654161 7_2:+44179018 None:intergenic
TGGCATTTATGGATACCCTA+GGG 0.657149 7_2:-44179733 Msa1058980:CDS
CTGTGATGATGCTGTTGCTG+CGG 0.667209 7_2:+44181672 None:intergenic
AGGTGCTGTAAATATTCAAG+GGG 0.670231 7_2:-44181320 Msa1058980:CDS
CTAGTGATGAATGAGTTGCA+TGG 0.688548 7_2:+44181736 None:intergenic
CAGCAAGACACTCATCATTG+GGG 0.711192 7_2:+44180678 None:intergenic
TTATTCAGGAAACTACATTG+TGG 0.717533 7_2:-44180774 Msa1058980:CDS
GATGAGTGTCTTGCTGACGT+TGG 0.721138 7_2:-44180671 Msa1058980:CDS
GTTGAAGCAAGAACAAACAG+GGG 0.727918 7_2:-44181449 Msa1058980:CDS
ACTGTACATTGGGAGCACAG+AGG 0.776186 7_2:-44179016 Msa1058980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACTATTATATTTTTATCA+TGG + chr7_2:44181459-44181478 None:intergenic 10.0%
!! ATATAATAGTTTATGATAAA+TGG - chr7_2:44181467-44181486 Msa1058980:CDS 10.0%
!!! TATTTAATTAGTTTTGAACT+AGG - chr7_2:44179319-44179338 Msa1058980:intron 15.0%
!!! ATTTAATTAGTTTTGAACTA+GGG - chr7_2:44179320-44179339 Msa1058980:intron 15.0%
!! AAAATATATTCTTTCAATGA+AGG - chr7_2:44180675-44180694 Msa1058980:CDS 15.0%
!! AAATATATTCTTTCAATGAA+GGG - chr7_2:44180676-44180695 Msa1058980:CDS 15.0%
!!! ATTTAATTTTCCCTTTTTTT+TGG - chr7_2:44181506-44181525 Msa1058980:CDS 15.0%
!! ATTCAAAATGATTGTAATTG+AGG + chr7_2:44179471-44179490 None:intergenic 20.0%
!! AATTGAAGCATATTTAACAA+GGG + chr7_2:44179557-44179576 None:intergenic 20.0%
!!! ATGATTTTGCAATTTGAATT+TGG + chr7_2:44179602-44179621 None:intergenic 20.0%
!!! TTGTTTTCTATTTTTTGTTC+AGG - chr7_2:44179684-44179703 Msa1058980:CDS 20.0%
!!! GATTGTTTTCATTTATGATT+AGG - chr7_2:44179961-44179980 Msa1058980:CDS 20.0%
!! AAAAAAACGAAAAGTAAGAA+CGG + chr7_2:44180301-44180320 None:intergenic 20.0%
!! TTAAGTAGTTTATCTAAACA+AGG + chr7_2:44181008-44181027 None:intergenic 20.0%
!!! ATCATTTTGCTTTTTACTTG+TGG + chr7_2:44178722-44178741 None:intergenic 25.0%
! AATGATATGAAGAAGATAAG+TGG - chr7_2:44178736-44178755 Msa1058980:three_prime_UTR 25.0%
! ATGATATGAAGAAGATAAGT+GGG - chr7_2:44178737-44178756 Msa1058980:three_prime_UTR 25.0%
! AGTGCAAAATTCAACAAAAA+TGG - chr7_2:44178862-44178881 Msa1058980:three_prime_UTR 25.0%
!!! TGTTTTGAATAGTATTTCGT+TGG - chr7_2:44179162-44179181 Msa1058980:intron 25.0%
! GAATTGAAGCATATTTAACA+AGG + chr7_2:44179558-44179577 None:intergenic 25.0%
! TGCAAAATCATTTATGCTAA+AGG - chr7_2:44179611-44179630 Msa1058980:CDS 25.0%
! AAAAAACGAAAAGTAAGAAC+GGG + chr7_2:44180300-44180319 None:intergenic 25.0%
! GTAATCTTTGTTCTAACAAT+CGG - chr7_2:44180567-44180586 Msa1058980:intron 25.0%
!! GAATATATTTTCCCTGATTT+CGG + chr7_2:44180666-44180685 None:intergenic 25.0%
! TAATTAAGCGCTTATAGTTT+AGG - chr7_2:44181025-44181044 Msa1058980:intron 25.0%
!!! TAAGTAATTTTGGAGAGTTT+AGG - chr7_2:44181141-44181160 Msa1058980:intron 25.0%
!!! AAGTAATTTTGGAGAGTTTA+GGG - chr7_2:44181142-44181161 Msa1058980:intron 25.0%
! TAAGTACTTAAAAGACTGTT+TGG + chr7_2:44181221-44181240 None:intergenic 25.0%
! TCAAATAAGTCAATTCAAAC+AGG - chr7_2:44181256-44181275 Msa1058980:intron 25.0%
! GTTTATGATAAATGGTATGA+TGG - chr7_2:44181475-44181494 Msa1058980:CDS 25.0%
! ATGAATCTGTCCAAAAAAAA+GGG + chr7_2:44181519-44181538 None:intergenic 25.0%
!!! ATGTTCTATGAAACTTGTTA+TGG - chr7_2:44181642-44181661 Msa1058980:CDS 25.0%
! TTGCAATAGAGAAATGAAAA+GGG + chr7_2:44181708-44181727 None:intergenic 25.0%
! TTTGCAATAGAGAAATGAAA+AGG + chr7_2:44181709-44181728 None:intergenic 25.0%
! TGTAAGTAAAGTATGCATAA+AGG - chr7_2:44181843-44181862 Msa1058980:five_prime_UTR 25.0%
! TTTTTACTTGTGGATTCCAA+TGG + chr7_2:44178712-44178731 None:intergenic 30.0%
! GTAATGGTTTGTGATACTAT+GGG + chr7_2:44178764-44178783 None:intergenic 30.0%
TTCAACAAAAATGGTTGCAA+TGG - chr7_2:44178871-44178890 Msa1058980:three_prime_UTR 30.0%
! AGCTTATAACATTGACTAGT+TGG - chr7_2:44179092-44179111 Msa1058980:intron 30.0%
ATGTAAACAGATTGCTTCTT+TGG - chr7_2:44179186-44179205 Msa1058980:intron 30.0%
! GCTAATATTTCTAACCTTAC+TGG - chr7_2:44179217-44179236 Msa1058980:intron 30.0%
!! AAGGTGCTGTAAATATTCAA+GGG - chr7_2:44179245-44179264 Msa1058980:intron 30.0%
TTGAGACCTAAAATGTTTCA+TGG - chr7_2:44179389-44179408 Msa1058980:intron 30.0%
TTAAAAAAAATCCGCAATCG+TGG + chr7_2:44179529-44179548 None:intergenic 30.0%
AGGTATTCTCAAATTGTTTG+AGG - chr7_2:44179704-44179723 Msa1058980:CDS 30.0%
TTATTCAGGAAACTACATTG+TGG - chr7_2:44179792-44179811 Msa1058980:CDS 30.0%
GTAAATTCCAAAAATGGAAC+CGG + chr7_2:44179866-44179885 None:intergenic 30.0%
TTATGATTAGGAATCGAACT+CGG - chr7_2:44179973-44179992 Msa1058980:CDS 30.0%
!! AACCAAATTAAGGTGTCATT+GGG + chr7_2:44180253-44180272 None:intergenic 30.0%
! TAACCAAATTAAGGTGTCAT+TGG + chr7_2:44180254-44180273 None:intergenic 30.0%
! ACACCTTAATTTGGTTAAAC+AGG - chr7_2:44180257-44180276 Msa1058980:intron 30.0%
! CACCTTAATTTGGTTAAACA+GGG - chr7_2:44180258-44180277 Msa1058980:intron 30.0%
TATTGTGTTAAGCAATGCTT+TGG + chr7_2:44180441-44180460 None:intergenic 30.0%
TACATATGTAAATTGCAGCT+TGG - chr7_2:44180459-44180478 Msa1058980:intron 30.0%
TTCACATTAGATCCAATGTA+TGG - chr7_2:44180606-44180625 Msa1058980:intron 30.0%
TCACATTAGATCCAATGTAT+GGG - chr7_2:44180607-44180626 Msa1058980:intron 30.0%
AAAACAAATTCCCCATACAT+TGG + chr7_2:44180621-44180640 None:intergenic 30.0%
ATGAAGGGAATTACAAGTTA+TGG - chr7_2:44180691-44180710 Msa1058980:CDS 30.0%
TGAAGGGAATTACAAGTTAT+GGG - chr7_2:44180692-44180711 Msa1058980:CDS 30.0%
AAAGTAAGAATGGAAAGCTT+AGG - chr7_2:44180862-44180881 Msa1058980:CDS 30.0%
TGTTCTACAATGAAACTCAT+TGG + chr7_2:44180906-44180925 None:intergenic 30.0%
AATGAGTTTCATTGTAGAAC+AGG - chr7_2:44180905-44180924 Msa1058980:intron 30.0%
!! GCTAGTTTCGTAAGTAATTT+TGG - chr7_2:44181131-44181150 Msa1058980:intron 30.0%
AATGAACTGAAATGAGCTTA+TGG - chr7_2:44181166-44181185 Msa1058980:intron 30.0%
!! ATTTTTGGACTGTTACATCA+AGG + chr7_2:44181412-44181431 None:intergenic 30.0%
ATGTAACAGTCCAAAAATTG+TGG - chr7_2:44181414-44181433 Msa1058980:CDS 30.0%
ATCATGGTTTAGTAGAAGAT+CGG + chr7_2:44181443-44181462 None:intergenic 30.0%
GATGAATCTGTCCAAAAAAA+AGG + chr7_2:44181520-44181539 None:intergenic 30.0%
! GTTATGGTCAAGTGATTTTA+AGG - chr7_2:44181658-44181677 Msa1058980:CDS 30.0%
TCTATTGCAAAGAAAAAGCA+AGG - chr7_2:44181718-44181737 Msa1058980:five_prime_UTR 30.0%
CATTGAGGAAATGTGATTTA+AGG + chr7_2:44181825-44181844 None:intergenic 30.0%
TGCATACTTTACTTACATTG+AGG + chr7_2:44181840-44181859 None:intergenic 30.0%
! CGTAATGGTTTGTGATACTA+TGG + chr7_2:44178765-44178784 None:intergenic 35.0%
AGAGATTGTAAGGTTCGTAA+TGG + chr7_2:44178780-44178799 None:intergenic 35.0%
CTGAAGGAAAAGAGATTGTA+AGG + chr7_2:44178790-44178809 None:intergenic 35.0%
!! ATTGTGTTCTAAGGTACTGA+AGG + chr7_2:44178806-44178825 None:intergenic 35.0%
TTGTTGAAGCAAGAACAAAC+AGG - chr7_2:44179115-44179134 Msa1058980:intron 35.0%
TGTTGAAGCAAGAACAAACA+GGG - chr7_2:44179116-44179135 Msa1058980:intron 35.0%
!! CAAGGTGCTGTAAATATTCA+AGG - chr7_2:44179244-44179263 Msa1058980:intron 35.0%
! AGGTGCTGTAAATATTCAAG+GGG - chr7_2:44179246-44179265 Msa1058980:intron 35.0%
ACTTGATGTTGTCTCAAATG+AGG - chr7_2:44179282-44179301 Msa1058980:intron 35.0%
! TGCTAAAGGAGTGTATTAGA+AGG - chr7_2:44179625-44179644 Msa1058980:CDS 35.0%
! GCTAAAGGAGTGTATTAGAA+GGG - chr7_2:44179626-44179645 Msa1058980:CDS 35.0%
! GTATTAGAAGGGTTTTCTCT+TGG - chr7_2:44179637-44179656 Msa1058980:CDS 35.0%
! TCAAATTGTTTGAGGTCAAG+TGG - chr7_2:44179712-44179731 Msa1058980:CDS 35.0%
! CAAATTGTTTGAGGTCAAGT+GGG - chr7_2:44179713-44179732 Msa1058980:CDS 35.0%
ATATTGGATGAACCATCAAG+TGG + chr7_2:44179826-44179845 None:intergenic 35.0%
CAAGCAACTTAGAAACCTAA+AGG - chr7_2:44180176-44180195 Msa1058980:intron 35.0%
CAACTTAGAAACCTAAAGGT+TGG - chr7_2:44180180-44180199 Msa1058980:intron 35.0%
AACTAGTTGAACCAACCTTT+AGG + chr7_2:44180194-44180213 None:intergenic 35.0%
! TAAAGGTTGGTTCAACTAGT+TGG - chr7_2:44180193-44180212 Msa1058980:intron 35.0%
! AAAGGTTGGTTCAACTAGTT+GGG - chr7_2:44180194-44180213 Msa1058980:intron 35.0%
ATCCCAATGACACCTTAATT+TGG - chr7_2:44180248-44180267 Msa1058980:intron 35.0%
AGCCCTGTTTAACCAAATTA+AGG + chr7_2:44180263-44180282 None:intergenic 35.0%
! TTCCAGTTCAAGTTCAACTA+TGG - chr7_2:44180354-44180373 Msa1058980:intron 35.0%
AACCATAGTTGAACTTGAAC+TGG + chr7_2:44180359-44180378 None:intergenic 35.0%
TTTGTTCTAACAATCGGCAA+AGG - chr7_2:44180573-44180592 Msa1058980:intron 35.0%
CACATTAGATCCAATGTATG+GGG - chr7_2:44180608-44180627 Msa1058980:intron 35.0%
AATCTCCAAATACCGAAATC+AGG - chr7_2:44180651-44180670 Msa1058980:CDS 35.0%
ATCTCCAAATACCGAAATCA+GGG - chr7_2:44180652-44180671 Msa1058980:CDS 35.0%
! TTTTCCCTGATTTCGGTATT+TGG + chr7_2:44180659-44180678 None:intergenic 35.0%
GAAATACATCGATGATCTCA+AGG - chr7_2:44180728-44180747 Msa1058980:CDS 35.0%
CCAATATACCTTGCTGAATA+AGG + chr7_2:44180774-44180793 None:intergenic 35.0%
CCTTATTCAGCAAGGTATAT+TGG - chr7_2:44180771-44180790 Msa1058980:CDS 35.0%
! AGCAAGGTATATTGGTAGTT+TGG - chr7_2:44180779-44180798 Msa1058980:CDS 35.0%
! AGGTATATTGGTAGTTTGGT+AGG - chr7_2:44180783-44180802 Msa1058980:CDS 35.0%
!! TCTTACTTTTCTTGTCCCTA+GGG + chr7_2:44180851-44180870 None:intergenic 35.0%
!! TTCTTACTTTTCTTGTCCCT+AGG + chr7_2:44180852-44180871 None:intergenic 35.0%
AGGGACAAGAAAAGTAAGAA+TGG - chr7_2:44180852-44180871 Msa1058980:CDS 35.0%
AAGTCATTCGACACTTACTT+CGG + chr7_2:44180982-44181001 None:intergenic 35.0%
GTACATGTTACTAAAAGCCA+CGG - chr7_2:44181283-44181302 Msa1058980:intron 35.0%
!! GGAGAAAGTTGAAAAGTACT+TGG - chr7_2:44181577-44181596 Msa1058980:CDS 35.0%
AATGTGATTTAAGGAAGGCT+TGG + chr7_2:44181816-44181835 None:intergenic 35.0%
GAGGAAATGTGATTTAAGGA+AGG + chr7_2:44181821-44181840 None:intergenic 35.0%
CATAAAGGTCTTAACCACTA+AGG - chr7_2:44181858-44181877 Msa1058980:five_prime_UTR 35.0%
!! CATGGATGGATTGTGTTCTA+AGG + chr7_2:44178815-44178834 None:intergenic 40.0%
TGATGAATGAGTTGCATGGA+TGG + chr7_2:44178829-44178848 None:intergenic 40.0%
CTAGTGATGAATGAGTTGCA+TGG + chr7_2:44178833-44178852 None:intergenic 40.0%
CATAGACGTGAAGGAGAATA+AGG + chr7_2:44178935-44178954 None:intergenic 40.0%
TCGAAGACACAAAGTTGGAA+AGG + chr7_2:44178959-44178978 None:intergenic 40.0%
! TCAAGAAGAAAGCATGTGAG+TGG - chr7_2:44179001-44179020 Msa1058980:CDS 40.0%
GTTGAAGCAAGAACAAACAG+GGG - chr7_2:44179117-44179136 Msa1058980:intron 40.0%
TCTAACCTTACTGGTGTTCA+AGG - chr7_2:44179226-44179245 Msa1058980:intron 40.0%
TGCTGTAAATATTCAAGGGG+AGG - chr7_2:44179249-44179268 Msa1058980:intron 40.0%
GACCTCTTTCTCTTAGAAAC+CGG - chr7_2:44179362-44179381 Msa1058980:intron 40.0%
!! CATTTTAGGTCTCAATCCTC+CGG + chr7_2:44179384-44179403 None:intergenic 40.0%
! CCTCGACCATGAAACATTTT+AGG + chr7_2:44179398-44179417 None:intergenic 40.0%
CCTAAAATGTTTCATGGTCG+AGG - chr7_2:44179395-44179414 Msa1058980:intron 40.0%
AAAAATCCGCAATCGTGGTT+TGG + chr7_2:44179524-44179543 None:intergenic 40.0%
GCAGTAGAAGAGAGTTATTC+AGG - chr7_2:44179778-44179797 Msa1058980:CDS 40.0%
AATTCCAAAAATGGAACCGG+TGG + chr7_2:44179863-44179882 None:intergenic 40.0%
GGGGCTGTAAATTCCAAAAA+TGG + chr7_2:44179872-44179891 None:intergenic 40.0%
TCAGCAAGACACTCATCATT+GGG + chr7_2:44179892-44179911 None:intergenic 40.0%
! TCGAAGCATTCACTTACTGT+GGG + chr7_2:44179937-44179956 None:intergenic 40.0%
! TTCGAAGCATTCACTTACTG+TGG + chr7_2:44179938-44179957 None:intergenic 40.0%
AGGAATCGAACTCGGTAATT+TGG - chr7_2:44179981-44180000 Msa1058980:CDS 40.0%
!! TGGAGTTGGTTTGATGATGT+AGG - chr7_2:44180001-44180020 Msa1058980:CDS 40.0%
TGAACCGATTGAACCATGAT+CGG - chr7_2:44180378-44180397 Msa1058980:intron 40.0%
CTTTCCGATCATGGTTCAAT+CGG + chr7_2:44180385-44180404 None:intergenic 40.0%
TGTTAAGCAATGCTTTGGTC+TGG + chr7_2:44180436-44180455 None:intergenic 40.0%
TAAGGTTTGCCATTAGAACC+TGG + chr7_2:44180756-44180775 None:intergenic 40.0%
ATGGCAAACCTTATTCAGCA+AGG - chr7_2:44180763-44180782 Msa1058980:CDS 40.0%
GTTTGGTAGGTGATTTCCAT+AGG - chr7_2:44180796-44180815 Msa1058980:CDS 40.0%
TGGCATTTATGGATACCCTA+GGG - chr7_2:44180833-44180852 Msa1058980:CDS 40.0%
AGTTTCATTGTAGAACAGGC+TGG - chr7_2:44180909-44180928 Msa1058980:intron 40.0%
GTAATCGTGACTTAAAACCG+TGG + chr7_2:44181303-44181322 None:intergenic 40.0%
TGTCTTTCCTACGACAGTTA+AGG + chr7_2:44181382-44181401 None:intergenic 40.0%
AACGTGTTCCACTGTACATT+GGG - chr7_2:44181540-44181559 Msa1058980:CDS 40.0%
TGGAAAGGACATAGACGTGA+AGG + chr7_2:44178944-44178963 None:intergenic 45.0%
TCGTGTCGAAGACACAAAGT+TGG + chr7_2:44178964-44178983 None:intergenic 45.0%
TTTGAACTAGGGTCGAACTC+TGG - chr7_2:44179331-44179350 Msa1058980:intron 45.0%
! CTCCGGTTTCTAAGAGAAAG+AGG + chr7_2:44179367-44179386 None:intergenic 45.0%
CTCTTTCTCTTAGAAACCGG+AGG - chr7_2:44179365-44179384 Msa1058980:intron 45.0%
! ATTGTTTGAGGTCAAGTGGG+AGG - chr7_2:44179716-44179735 Msa1058980:CDS 45.0%
GACAGGGATTATAGCATCAG+AGG - chr7_2:44179738-44179757 Msa1058980:CDS 45.0%
TAACTCTCTTCTACTGCCAC+TGG + chr7_2:44179775-44179794 None:intergenic 45.0%
GTGGTCTTTGATCCACTTGA+TGG - chr7_2:44179811-44179830 Msa1058980:CDS 45.0%
CAGCAAGACACTCATCATTG+GGG + chr7_2:44179891-44179910 None:intergenic 45.0%
GTCAGCAAGACACTCATCAT+TGG + chr7_2:44179893-44179912 None:intergenic 45.0%
! CGAAGCATTCACTTACTGTG+GGG + chr7_2:44179936-44179955 None:intergenic 45.0%
! CGAACTCGGTAATTTGGAGT+TGG - chr7_2:44179987-44180006 Msa1058980:CDS 45.0%
TTGGTGAGACTTTCCGATCA+TGG + chr7_2:44180394-44180413 None:intergenic 45.0%
GATCGGAAAGTCTCACCAAT+TGG - chr7_2:44180395-44180414 Msa1058980:intron 45.0%
GCAATGCTTTGGTCTGGTAT+CGG + chr7_2:44180430-44180449 None:intergenic 45.0%
ATTGTGAATGTGTGCCAACC+AGG - chr7_2:44180501-44180520 Msa1058980:intron 45.0%
ATCGATGATCTCAAGGAACC+AGG - chr7_2:44180735-44180754 Msa1058980:CDS 45.0%
! CTCAAGGAACCAGGTTCTAA+TGG - chr7_2:44180744-44180763 Msa1058980:CDS 45.0%
TTCCATAGGACACTGCTCTA+TGG - chr7_2:44180810-44180829 Msa1058980:CDS 45.0%
CTGCTCTATGGTGGCATTTA+TGG - chr7_2:44180822-44180841 Msa1058980:CDS 45.0%
GTGGCATTTATGGATACCCT+AGG - chr7_2:44180832-44180851 Msa1058980:CDS 45.0%
TTCATTGTAGAACAGGCTGG+TGG - chr7_2:44180912-44180931 Msa1058980:intron 45.0%
CATTCGACACTTACTTCGGT+GGG + chr7_2:44180978-44180997 None:intergenic 45.0%
TCATTCGACACTTACTTCGG+TGG + chr7_2:44180979-44180998 None:intergenic 45.0%
GTCGCATTTGATTGCTACGA+CGG + chr7_2:44181344-44181363 None:intergenic 45.0%
AATGCGACCTTAACTGTCGT+AGG - chr7_2:44181372-44181391 Msa1058980:CDS 45.0%
! AGATCGGCAGCCACAATTTT+TGG + chr7_2:44181427-44181446 None:intergenic 45.0%
CAACGTGTTCCACTGTACAT+TGG - chr7_2:44181539-44181558 Msa1058980:CDS 45.0%
! CTGTGATGATGCTGTTGCTG+CGG + chr7_2:44178897-44178916 None:intergenic 50.0%
! AGAAAGCATGTGAGTGGCTC+TGG - chr7_2:44179007-44179026 Msa1058980:CDS 50.0%
CAGCACCTTGAACACCAGTA+AGG + chr7_2:44179234-44179253 None:intergenic 50.0%
CACAGTCCAAACCACGATTG+CGG - chr7_2:44179515-44179534 Msa1058980:intron 50.0%
AGAGGAAGAAGATGTGCCAG+TGG - chr7_2:44179756-44179775 Msa1058980:CDS 50.0%
!! GGACACTGCAGCATCGATAT+TGG + chr7_2:44179842-44179861 None:intergenic 50.0%
!!! GTGTCCACCGGTTCCATTTT+TGG - chr7_2:44179856-44179875 Msa1058980:CDS 50.0%
GATGAGTGTCTTGCTGACGT+TGG - chr7_2:44179895-44179914 Msa1058980:CDS 50.0%
CCGATAAACTTGCCTGCTCT+CGG + chr7_2:44180220-44180239 None:intergenic 50.0%
CCGAGAGCAGGCAAGTTTAT+CGG - chr7_2:44180217-44180236 Msa1058980:intron 50.0%
GAGCAGGCAAGTTTATCGGT+TGG - chr7_2:44180221-44180240 Msa1058980:intron 50.0%
AGTCTCACCAATTGGACCTC+CGG - chr7_2:44180403-44180422 Msa1058980:intron 50.0%
CTAGAAGGTTGCTTCCTGGT+TGG + chr7_2:44180518-44180537 None:intergenic 50.0%
TGCAGTAACCAGCTGCTAGA+AGG + chr7_2:44180533-44180552 None:intergenic 50.0%
CACCATAGAGCAGTGTCCTA+TGG + chr7_2:44180815-44180834 None:intergenic 50.0%
CATAGGACACTGCTCTATGG+TGG - chr7_2:44180813-44180832 Msa1058980:CDS 50.0%
GTAGAACAGGCTGGTGGAAA+AGG - chr7_2:44180918-44180937 Msa1058980:intron 50.0%
GCTGGTGGAAAAGGTTCAGA+TGG - chr7_2:44180927-44180946 Msa1058980:intron 50.0%
TCTGTGCTCCCAATGTACAG+TGG + chr7_2:44181551-44181570 None:intergenic 50.0%
! ACTGTACATTGGGAGCACAG+AGG - chr7_2:44181550-44181569 Msa1058980:CDS 50.0%
!! AAGCATGTGAGTGGCTCTGG+AGG - chr7_2:44179010-44179029 Msa1058980:CDS 55.0%
! CTCTGGAGGAGTGAGATGCA+TGG - chr7_2:44179024-44179043 Msa1058980:CDS 55.0%
GGAGTGAGATGCATGGCTGT+TGG - chr7_2:44179031-44179050 Msa1058980:CDS 55.0%
! GGCTGTTGGTGAAGTAGCTG+CGG - chr7_2:44179045-44179064 Msa1058980:intron 55.0%
TTGAGGTCAAGTGGGAGGAC+AGG - chr7_2:44179721-44179740 Msa1058980:CDS 55.0%
TGAGGTCAAGTGGGAGGACA+GGG - chr7_2:44179722-44179741 Msa1058980:CDS 55.0%
ATCGATGCTGCAGTGTCCAC+CGG - chr7_2:44179844-44179863 Msa1058980:CDS 55.0%
TATCGGACCGGAGGTCCAAT+TGG + chr7_2:44180413-44180432 None:intergenic 55.0%
! GCTTTGGTCTGGTATCGGAC+CGG + chr7_2:44180425-44180444 None:intergenic 55.0%
GCTGCTAGAAGGTTGCTTCC+TGG + chr7_2:44180522-44180541 None:intergenic 55.0%
GGAAGCAACCTTCTAGCAGC+TGG - chr7_2:44180522-44180541 Msa1058980:intron 55.0%
! CATTGGGAGCACAGAGGAAG+TGG - chr7_2:44181556-44181575 Msa1058980:CDS 55.0%
CAACTAGTTGGGCCGAGAGC+AGG - chr7_2:44180205-44180224 Msa1058980:intron 60.0%
! TTGGTCTGGTATCGGACCGG+AGG + chr7_2:44180422-44180441 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 44178696 44181892 44178696 ID=Msa1058980;Name=Msa1058980
chr7_2 mRNA 44178696 44181892 44178696 ID=Msa1058980-mRNA-1;Parent=Msa1058980;Name=Msa1058980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=185|1|1|1|1|1|4|288|411
chr7_2 exon 44178696 44179055 44178696 ID=Msa1058980-mRNA-1:exon:8052;Parent=Msa1058980-mRNA-1
chr7_2 exon 44179605 44180111 44179605 ID=Msa1058980-mRNA-1:exon:8051;Parent=Msa1058980-mRNA-1
chr7_2 exon 44180649 44180882 44180649 ID=Msa1058980-mRNA-1:exon:8050;Parent=Msa1058980-mRNA-1
chr7_2 exon 44181285 44181892 44181285 ID=Msa1058980-mRNA-1:exon:8049;Parent=Msa1058980-mRNA-1
chr7_2 five_prime_UTR 44181708 44181892 44181708 ID=Msa1058980-mRNA-1:five_prime_utr;Parent=Msa1058980-mRNA-1
chr7_2 CDS 44181285 44181707 44181285 ID=Msa1058980-mRNA-1:cds;Parent=Msa1058980-mRNA-1
chr7_2 CDS 44180649 44180882 44180649 ID=Msa1058980-mRNA-1:cds;Parent=Msa1058980-mRNA-1
chr7_2 CDS 44179605 44180111 44179605 ID=Msa1058980-mRNA-1:cds;Parent=Msa1058980-mRNA-1
chr7_2 CDS 44178984 44179055 44178984 ID=Msa1058980-mRNA-1:cds;Parent=Msa1058980-mRNA-1
chr7_2 three_prime_UTR 44178696 44178983 44178696 ID=Msa1058980-mRNA-1:three_prime_utr;Parent=Msa1058980-mRNA-1
Gene Sequence

>Msa1058980

ATGGTTGCAATGGCCGCAGCAACAGCATCATCACAGTTAATATTCTCAAAACCTTATTCTCCTTCACGTCTATGTCCTTTCCAACTTTGTGTCTTCGACACGAAATCAGTGTTATCAAGTTCAAGAAGAAAGCATGTGAGTGGCTCTGGAGGAGTGAGATGCATGGCTGTTGGTGAAGTAGCTGCGGAGACGAAGAAAAGAAGTAGTTATGAGCTTATAACATTGACTAGTTGGTTGTTGAAGCAAGAACAAACAGGGGTTATTGATGCTGAACTTACTATTGTTTTGAATAGTATTTCGTTGGCATGTAAACAGATTGCTTCTTTGGTTCAAAGAGCTAATATTTCTAACCTTACTGGTGTTCAAGGTGCTGTAAATATTCAAGGGGAGGATCAGAAAAAACTTGATGTTGTCTCAAATGAGGTATTCTCAAATTGTTTGAGGTCAAGTGGGAGGACAGGGATTATAGCATCAGAGGAAGAAGATGTGCCAGTGGCAGTAGAAGAGAGTTATTCAGGAAACTACATTGTGGTCTTTGATCCACTTGATGGTTCATCCAATATCGATGCTGCAGTGTCCACCGGTTCCATTTTTGGAATTTACAGCCCCAATGATGAGTGTCTTGCTGACGTTGGTGATGAGTCTGATGACCCCACACTTGGCACAGAAGAACAAAGATGCATTGTGAATGTGTGCCAACCAGGAAGCAACCTTCTAGCAGCTGGTTACTGCATGTATTCTAGCTCAGTAATCTTTGTTCTAACAATCGGCAAAGGAGTGTTTGTATTCACATTAGATCCAATGTATGGGGAATTTGTTTTGACTCAAGAAAATCTCCAAATACCGAAATCAGGGAAAATATATTCTTTCAATGAAGGGAATTACAAGTTATGGGATGATAACTTGAAGAAATACATCGATGATCTCAAGGAACCAGGTTCTAATGGCAAACCTTATTCAGCAAGGTATATTGGTAGTTTGGTAGGTGATTTCCATAGGACACTGCTCTATGGTGGCATTTATGGATACCCTAGGGACAAGAAAAGTAAGAATGGAAAGCTTAGGCTTTTATATGAGTGTGCTCCAATGAGTTTCATTGTAGAACAGGCTGGTGGAAAAGGTTCAGATGGTCATCAAAGAGTACTTGACATTCAACCCACCGAAATTCATCAACGTGTTCCACTGTACATTGGGAGCACAGAGGAAGTGGAGAAAGTTGAAAAGTACTTGGCTTAA

Protein sequence

>Msa1058980

MVAMAAATASSQLIFSKPYSPSRLCPFQLCVFDTKSVLSSSRRKHVSGSGGVRCMAVGEVAAETKKRSSYELITLTSWLLKQEQTGVIDAELTIVLNSISLACKQIASLVQRANISNLTGVQGAVNIQGEDQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPNDECLADVGDESDDPTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSVIFVLTIGKGVFVFTLDPMYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDDNLKKYIDDLKEPGSNGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKVEKYLA*