AlfalfaGEDB | Msa0282860

M. sativa cultivar zhongmu-4 / Msa0282860

KEGG: -
GO: GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0032947 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0065003 GO:0071840
PFAM: PF01106.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0282860	AES65208.1	95.455	242	11	0	1	242	1	242	6.88e-167	470

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0282860	sp\|Q84RQ7\|NIFU3_ARATH	70.732	205	57	2	39	242	34	236	1.96e-94	279

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0282860	G7IN05	95.455	242	11	0	1	242	1	242	3.28e-167	470

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0282860	0.884883	1.310280e-71	-8.615850e-47
Msa0000500	Msa0282860	0.815596	8.525631e-52	-8.615850e-47
Msa0001460	Msa0282860	0.857874	1.212150e-62	-8.615850e-47
Msa0001540	Msa0282860	0.809067	2.272075e-50	-8.615850e-47
Msa0003470	Msa0282860	0.828238	1.004699e-54	-8.615850e-47
Msa0005160	Msa0282860	0.829683	4.486958e-55	-8.615850e-47
Msa0005690	Msa0282860	0.833037	6.713324e-56	-8.615850e-47
Msa0006050	Msa0282860	0.869219	3.648776e-66	-8.615850e-47
Msa0006700	Msa0282860	0.826401	2.768294e-54	-8.615850e-47
Msa0008250	Msa0282860	0.851428	8.935504e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0282860	MtrunA17_Chr2g0298061	95.455	242	11	0	1	242	1	242	6.32e-171	470
Msa0282860	MtrunA17_Chr2g0277211	71.951	164	46	0	78	241	60	223	1.83e-78	235
Msa0282860	MtrunA17_Chr2g0277211	40.659	91	49	2	153	239	54	143	2.89e-11	61.2
Msa0282860	MtrunA17_Chr7g0270231	33.772	228	128	7	6	230	1	208	1.37e-25	99.8
Msa0282860	MtrunA17_Chr8g0352991	44.318	88	49	0	70	157	48	135	8.10e-18	77.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0282860	AT4G25910.1	70.732	205	57	2	39	242	34	236	2.00e-95	279
Msa0282860	AT5G49940.1	70.787	178	48	1	64	241	62	235	2.69e-81	243
Msa0282860	AT5G49940.2	65.812	117	36	1	64	180	62	174	3.62e-44	147
Msa0282860	AT5G49940.2	47.297	74	34	2	172	241	85	157	6.74e-12	62.8
Msa0282860	AT4G01940.1	36.548	197	115	6	35	230	36	223	9.04e-26	101

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Find 55 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATATGACGCAGAAGA+AGG	0.526998	2_3:-19287975	None:intergenic
AAACTTGCTTAATATTAATT+TGG	0.170509	2_3:+19287315	None:intergenic
AAATAAGAGTACTAAGTTTG+TGG	0.434900	2_3:+19287863	None:intergenic
AACCCGCGAATTTAATTGCG+AGG	0.597633	2_3:-19285848	Msa0282860:three_prime_UTR
ACCATATCTTATTGGAACTG+GGG	0.604069	2_3:-19286182	Msa0282860:CDS
ACTCACACTCAAATGTTGGG+TGG	0.636892	2_3:-19287666	Msa0282860:exon
ACTGTCATAACTCCTGCTGC+CGG	0.622897	2_3:+19286100	None:intergenic
AGAAGGTCATAAGATGGAAA+AGG	0.515717	2_3:-19287958	Msa0282860:five_prime_UTR
AGACCATATCTTATTGGAAC+TGG	0.334639	2_3:-19286184	Msa0282860:CDS
AGAGAATGTAGAGAAAGTTT+TGG	0.294107	2_3:-19286806	Msa0282860:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATTCTTATGGTAGCTTTC+TGG	-	chr2_3:19286006-19286025	Msa0282860:three_prime_UTR	30.0%
TATTACTCACACTCAAATGT+TGG	-	chr2_3:19286038-19286057	Msa0282860:CDS	30.0%
ATTACTCACACTCAAATGTT+GGG	-	chr2_3:19286039-19286058	Msa0282860:CDS	30.0%
TTGGACAATAATCTATGAGA+TGG	+	chr2_3:19286132-19286151	None:intergenic	30.0%
TTCTTGAAGAATCTTATAGC+AGG	-	chr2_3:19286325-19286344	Msa0282860:intron	30.0%
GTGCTTCATAAATTGCAATT+TGG	+	chr2_3:19286648-19286667	None:intergenic	30.0%
TCAACCATGACATTAAAGAT+GGG	-	chr2_3:19287035-19287054	Msa0282860:intron	30.0%
ACTAAGTTGTTTATCCAAAC+AGG	-	chr2_3:19287311-19287330	Msa0282860:CDS	30.0%
TTGTTGCTAGAGTTAAAAAC+TGG	-	chr2_3:19287953-19287972	Msa0282860:five_prime_UTR	30.0%
TTATTCTTATGGTAGCTTTC+TGG	-	chr2_3:19286006-19286025	Msa0282860:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	19285748	19287982	19285748	ID=Msa0282860;Name=Msa0282860
chr2_3	mRNA	19285748	19287982	19285748	ID=Msa0282860-mRNA-1;Parent=Msa0282860;Name=Msa0282860-mRNA-1;_AED=0.18;_eAED=0.18;_QI=306\|1\|1\|1\|1\|1\|4\|282\|242
chr2_3	exon	19285748	19286221	19285748	ID=Msa0282860-mRNA-1:exon:7761;Parent=Msa0282860-mRNA-1
chr2_3	exon	19286570	19286868	19286570	ID=Msa0282860-mRNA-1:exon:7760;Parent=Msa0282860-mRNA-1
chr2_3	exon	19287276	19287396	19287276	ID=Msa0282860-mRNA-1:exon:7759;Parent=Msa0282860-mRNA-1
chr2_3	exon	19287560	19287982	19287560	ID=Msa0282860-mRNA-1:exon:7758;Parent=Msa0282860-mRNA-1
chr2_3	five_prime_UTR	19287677	19287982	19287677	ID=Msa0282860-mRNA-1:five_prime_utr;Parent=Msa0282860-mRNA-1
chr2_3	CDS	19287560	19287676	19287560	ID=Msa0282860-mRNA-1:cds;Parent=Msa0282860-mRNA-1
chr2_3	CDS	19287276	19287396	19287276	ID=Msa0282860-mRNA-1:cds;Parent=Msa0282860-mRNA-1
chr2_3	CDS	19286570	19286868	19286570	ID=Msa0282860-mRNA-1:cds;Parent=Msa0282860-mRNA-1
chr2_3	CDS	19286030	19286221	19286030	ID=Msa0282860-mRNA-1:cds;Parent=Msa0282860-mRNA-1
chr2_3	three_prime_UTR	19285748	19286029	19285748	ID=Msa0282860-mRNA-1:three_prime_utr;Parent=Msa0282860-mRNA-1

Gene Sequence

>Msa0282860

ATGTTGGGTGGTTCATTCTCAACTCCTACAACTCAATGCCTCAAATCAACAAAAACAACAATTACAATGCTTTATCCATCTCATAGATTATTGTCCAAACATTTTTGTCTCTTTAAGAATCTTATAGCAGGTAATAGAAGATTTTCATCAAATGAGAGTTGTTTTCTGAGAGGTCACCAAATTAATATTAAGCAAGTTTTTGGGCTTATCTCTCGTCGAGCTCCAAGAAACAAAGCAGGACTTTTTGTTTCTCCGAGATGTGTCCTGCCACTGACAGAAGAGAATGTAGAGAAAGTTTTGGATGAAGTAAGGCCTGGTTTGATGGCTGATGGAGGGAATGTGGCATTGCATGAGATAGATGGTCTTGTTGTTATCCTCAAACTACAAGGAGCGTGTGGATCATGTCCTAGCTCAACCATGACATTAAAGATGGGGATCGAAACTCGTCTTCGCGATAAGATTCCAGAAATCTTGGAGGTTGAACAGATACTAGATACTGAGACTGGTCTTGAGTTAACTGAAGAAAATGTTGAAAGTGTTCTTTCAGAAATTAGACCATATCTTATTGGAACTGGGGGAGGAACATTAGAGCTTGTTGAGATTAATGATTACATCGTTAAAGTTCGGCTAAGTGGACCGGCAGCAGGAGTTATGACAGTTCGTGTTGCGTTAACGCAGAAGCTGAGAGACAAGATACCTTCTATTGCTGCTGTGCAGCTAATAGAATGA

Protein sequence

>Msa0282860

MLGGSFSTPTTQCLKSTKTTITMLYPSHRLLSKHFCLFKNLIAGNRRFSSNESCFLRGHQINIKQVFGLISRRAPRNKAGLFVSPRCVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELTEENVESVLSEIRPYLIGTGGGTLELVEINDYIVKVRLSGPAAGVMTVRVALTQKLRDKIPSIAAVQLIE*