AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0282860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0282860 MtrunA17_Chr2g0298061 95.455 242 11 0 1 242 1 242 6.32e-171 470
Msa0282860 MtrunA17_Chr2g0277211 71.951 164 46 0 78 241 60 223 1.83e-78 235
Msa0282860 MtrunA17_Chr2g0277211 40.659 91 49 2 153 239 54 143 2.89e-11 61.2
Msa0282860 MtrunA17_Chr7g0270231 33.772 228 128 7 6 230 1 208 1.37e-25 99.8
Msa0282860 MtrunA17_Chr8g0352991 44.318 88 49 0 70 157 48 135 8.10e-18 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0282860 AT4G25910.1 70.732 205 57 2 39 242 34 236 2.00e-95 279
Msa0282860 AT5G49940.1 70.787 178 48 1 64 241 62 235 2.69e-81 243
Msa0282860 AT5G49940.2 65.812 117 36 1 64 180 62 174 3.62e-44 147
Msa0282860 AT5G49940.2 47.297 74 34 2 172 241 85 157 6.74e-12 62.8
Msa0282860 AT4G01940.1 36.548 197 115 6 35 230 36 223 9.04e-26 101

Find 55 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTCTTATGGTAGCTTTC+TGG 0.139578 2_3:-19287702 Msa0282860:five_prime_UTR
TGTTCAACCTCCAAGATTTC+TGG 0.161640 2_3:+19286622 None:intergenic
AAACTTGCTTAATATTAATT+TGG 0.170509 2_3:+19287315 None:intergenic
GAAGAACCTGCTTTGTTTCT+TGG 0.181058 2_3:+19287269 None:intergenic
GAAATTAGACCATATCTTAT+TGG 0.195631 2_3:-19286190 Msa0282860:CDS
GTTGCTCATTATTATTCTTA+TGG 0.282386 2_3:-19287713 Msa0282860:five_prime_UTR
TCAGTGTCAGTTACTCTAAT+AGG 0.289272 2_3:-19285909 Msa0282860:three_prime_UTR
AGAGAATGTAGAGAAAGTTT+TGG 0.294107 2_3:-19286806 Msa0282860:CDS
AGACCATATCTTATTGGAAC+TGG 0.334639 2_3:-19286184 Msa0282860:CDS
CGATAAGATTCCAGAAATCT+TGG 0.378676 2_3:-19286632 Msa0282860:CDS
AGGAAACTGTGTGAGAGAAT+TGG 0.387689 2_3:+19287914 None:intergenic
CACACGCTCCTTGTAGTTTG+AGG 0.390945 2_3:+19286710 None:intergenic
GATTTGAGGCATTGAGTTGT+AGG 0.404948 2_3:+19287630 None:intergenic
ATGATTACATCGTTAAAGTT+CGG 0.414506 2_3:-19286132 Msa0282860:CDS
TATTACTCACACTCAAATGT+TGG 0.432963 2_3:-19287670 Msa0282860:exon
AAATAAGAGTACTAAGTTTG+TGG 0.434900 2_3:+19287863 None:intergenic
CGGCTAAGTGGACCGGCAGC+AGG 0.440486 2_3:-19286112 Msa0282860:CDS
GAAACACACAAGCTACATAA+AGG 0.441222 2_3:+19287894 None:intergenic
AGCTGCACAGCAGCAATAGA+AGG 0.442231 2_3:+19286040 None:intergenic
CTCAACCATGACATTAAAGA+TGG 0.445958 2_3:-19286674 Msa0282860:CDS
TGAAGTAAGGCCTGGTTTGA+TGG 0.459751 2_3:-19286782 Msa0282860:CDS
ATCGTTAAAGTTCGGCTAAG+TGG 0.474610 2_3:-19286124 Msa0282860:CDS
ATTACTCACACTCAAATGTT+GGG 0.477105 2_3:-19287669 Msa0282860:exon
TTTAATGTCATGGTTGAGCT+AGG 0.503610 2_3:+19286679 None:intergenic
GATCCCCATCTTTAATGTCA+TGG 0.505918 2_3:+19286669 None:intergenic
CGCAGAAGAAGGTCATAAGA+TGG 0.512678 2_3:-19287964 None:intergenic
TTCTTGAAGAATCTTATAGC+AGG 0.514284 2_3:-19287383 Msa0282860:intron
AGAAGGTCATAAGATGGAAA+AGG 0.515717 2_3:-19287958 Msa0282860:five_prime_UTR
GACCATATCTTATTGGAACT+GGG 0.523059 2_3:-19286183 Msa0282860:CDS
GTCCTCGCAATTAAATTCGC+GGG 0.525605 2_3:+19285846 None:intergenic
AAAAGATATGACGCAGAAGA+AGG 0.526998 2_3:-19287975 None:intergenic
CATTCTCTTCTGTCAGTGGC+AGG 0.536464 2_3:+19286821 None:intergenic
TCTACATTCTCTTCTGTCAG+TGG 0.539215 2_3:+19286817 None:intergenic
TTGGACAATAATCTATGAGA+TGG 0.551714 2_3:+19287579 None:intergenic
CCTCCATCAGCCATCAAACC+AGG 0.556402 2_3:+19286772 None:intergenic
AGTCCTCGCAATTAAATTCG+CGG 0.556536 2_3:+19285845 None:intergenic
GTTGTTATCCTCAAACTACA+AGG 0.559144 2_3:-19286718 Msa0282860:CDS
GTGGCATTGCATGAGATAGA+TGG 0.565280 2_3:-19286745 Msa0282860:CDS
TCAACCATGACATTAAAGAT+GGG 0.568619 2_3:-19286673 Msa0282860:CDS
TAAAGTTCGGCTAAGTGGAC+CGG 0.574154 2_3:-19286119 Msa0282860:CDS
CAGATACTAGATACTGAGAC+TGG 0.580123 2_3:-19286601 Msa0282860:CDS
TAAGATTCCAGAAATCTTGG+AGG 0.581548 2_3:-19286629 Msa0282860:CDS
CTGGTTTGATGGCTGATGGA+GGG 0.590897 2_3:-19286771 Msa0282860:CDS
CCTGGTTTGATGGCTGATGG+AGG 0.592266 2_3:-19286772 Msa0282860:CDS
GTCAGTGGCAGGACACATCT+CGG 0.597217 2_3:+19286832 None:intergenic
AACCCGCGAATTTAATTGCG+AGG 0.597633 2_3:-19285848 Msa0282860:three_prime_UTR
ACCATATCTTATTGGAACTG+GGG 0.604069 2_3:-19286182 Msa0282860:CDS
CCATATCTTATTGGAACTGG+GGG 0.604476 2_3:-19286181 Msa0282860:CDS
CGAGCTCCAAGAAACAAAGC+AGG 0.610602 2_3:-19287275 Msa0282860:intron
GATGGCTGATGGAGGGAATG+TGG 0.613469 2_3:-19286764 Msa0282860:CDS
AGGCCTGGTTTGATGGCTGA+TGG 0.614038 2_3:-19286775 Msa0282860:CDS
ACTGTCATAACTCCTGCTGC+CGG 0.622897 2_3:+19286100 None:intergenic
CTCAAACTACAAGGAGCGTG+TGG 0.626569 2_3:-19286709 Msa0282860:CDS
ACTCACACTCAAATGTTGGG+TGG 0.636892 2_3:-19287666 Msa0282860:exon
CAACCATGACATTAAAGATG+GGG 0.657174 2_3:-19286672 Msa0282860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACTTGCTTAATATTAATT+TGG + chr2_3:19286396-19286415 None:intergenic 15.0%
!!! ATTAATATTAAGCAAGTTTT+TGG - chr2_3:19286397-19286416 Msa0282860:intron 15.0%
!!! TTAATATTAAGCAAGTTTTT+GGG - chr2_3:19286398-19286417 Msa0282860:intron 15.0%
!! ATAATCATGAATTCTTATTA+AGG + chr2_3:19286624-19286643 None:intergenic 15.0%
!!! GCAATTTTTTTTTTTTTTGT+AGG - chr2_3:19286840-19286859 Msa0282860:CDS 15.0%
!!! AATTTTTCTACAAACATATA+AGG + chr2_3:19287371-19287390 None:intergenic 15.0%
!!! AAACTTGCTTAATATTAATT+TGG + chr2_3:19286396-19286415 None:intergenic 15.0%
!!! ATTAATATTAAGCAAGTTTT+TGG - chr2_3:19286397-19286416 Msa0282860:intron 15.0%
!!! TTAATATTAAGCAAGTTTTT+GGG - chr2_3:19286398-19286417 Msa0282860:intron 15.0%
!! ATAATCATGAATTCTTATTA+AGG + chr2_3:19286624-19286643 None:intergenic 15.0%
!!! GCAATTTTTTTTTTTTTTGT+AGG - chr2_3:19286840-19286859 Msa0282860:CDS 15.0%
!!! AATTTTTCTACAAACATATA+AGG + chr2_3:19287371-19287390 None:intergenic 15.0%
!!! AAAGTATTTTCTTTCTTGAT+TGG + chr2_3:19285917-19285936 None:intergenic 20.0%
!!! GAAACTGATAATTTAGTTTT+TGG + chr2_3:19285969-19285988 None:intergenic 20.0%
!! TTCATATTAGACAAAAAACA+AGG + chr2_3:19286198-19286217 None:intergenic 20.0%
!!! GATATATGTGAGTTTTTTTT+TGG - chr2_3:19286270-19286289 Msa0282860:intron 20.0%
!!! GATTTTAATCAATTCTTTCT+TGG - chr2_3:19286506-19286525 Msa0282860:intron 20.0%
!!! AATTCTTTCTTGGATTTTAT+TGG - chr2_3:19286516-19286535 Msa0282860:intron 20.0%
!! GTGATATACAAATGAAATTA+TGG + chr2_3:19287202-19287221 None:intergenic 20.0%
!! TTGTAGAAAAATTATCTCTA+AGG - chr2_3:19287378-19287397 Msa0282860:intron 20.0%
!!! ATAAAGTTGTTCATTTTTTC+AGG - chr2_3:19287487-19287506 Msa0282860:intron 20.0%
!!! AAAGTATTTTCTTTCTTGAT+TGG + chr2_3:19285917-19285936 None:intergenic 20.0%
!!! GAAACTGATAATTTAGTTTT+TGG + chr2_3:19285969-19285988 None:intergenic 20.0%
!! TTCATATTAGACAAAAAACA+AGG + chr2_3:19286198-19286217 None:intergenic 20.0%
!!! GATATATGTGAGTTTTTTTT+TGG - chr2_3:19286270-19286289 Msa0282860:intron 20.0%
!!! GATTTTAATCAATTCTTTCT+TGG - chr2_3:19286506-19286525 Msa0282860:intron 20.0%
!!! AATTCTTTCTTGGATTTTAT+TGG - chr2_3:19286516-19286535 Msa0282860:intron 20.0%
!! GTGATATACAAATGAAATTA+TGG + chr2_3:19287202-19287221 None:intergenic 20.0%
!! TTGTAGAAAAATTATCTCTA+AGG - chr2_3:19287378-19287397 Msa0282860:intron 20.0%
!!! ATAAAGTTGTTCATTTTTTC+AGG - chr2_3:19287487-19287506 Msa0282860:intron 20.0%
!!! GAGAATTGGATTTGTTTTAT+AGG + chr2_3:19285783-19285802 None:intergenic 25.0%
!!! AAATAAGAGTACTAAGTTTG+TGG + chr2_3:19285848-19285867 None:intergenic 25.0%
! GTTGCTCATTATTATTCTTA+TGG - chr2_3:19285995-19286014 Msa0282860:three_prime_UTR 25.0%
!!! TTGTTGTTTTTGTTGATTTG+AGG + chr2_3:19286095-19286114 None:intergenic 25.0%
! CTTAAAGAGACAAAAATGTT+TGG + chr2_3:19286151-19286170 None:intergenic 25.0%
!! CAAACATTTTTGTCTCTTTA+AGG - chr2_3:19286149-19286168 Msa0282860:CDS 25.0%
! GAAATTAGACCATATCTTAT+TGG - chr2_3:19287518-19287537 Msa0282860:intron 25.0%
! ATGATTACATCGTTAAAGTT+CGG - chr2_3:19287576-19287595 Msa0282860:CDS 25.0%
!!! GAGAATTGGATTTGTTTTAT+AGG + chr2_3:19285783-19285802 None:intergenic 25.0%
!!! AAATAAGAGTACTAAGTTTG+TGG + chr2_3:19285848-19285867 None:intergenic 25.0%
! GTTGCTCATTATTATTCTTA+TGG - chr2_3:19285995-19286014 Msa0282860:three_prime_UTR 25.0%
!!! TTGTTGTTTTTGTTGATTTG+AGG + chr2_3:19286095-19286114 None:intergenic 25.0%
! CTTAAAGAGACAAAAATGTT+TGG + chr2_3:19286151-19286170 None:intergenic 25.0%
!! CAAACATTTTTGTCTCTTTA+AGG - chr2_3:19286149-19286168 Msa0282860:CDS 25.0%
! GAAATTAGACCATATCTTAT+TGG - chr2_3:19287518-19287537 Msa0282860:intron 25.0%
! ATGATTACATCGTTAAAGTT+CGG - chr2_3:19287576-19287595 Msa0282860:CDS 25.0%
TTATTCTTATGGTAGCTTTC+TGG - chr2_3:19286006-19286025 Msa0282860:three_prime_UTR 30.0%
TATTACTCACACTCAAATGT+TGG - chr2_3:19286038-19286057 Msa0282860:CDS 30.0%
ATTACTCACACTCAAATGTT+GGG - chr2_3:19286039-19286058 Msa0282860:CDS 30.0%
TTGGACAATAATCTATGAGA+TGG + chr2_3:19286132-19286151 None:intergenic 30.0%
TTCTTGAAGAATCTTATAGC+AGG - chr2_3:19286325-19286344 Msa0282860:intron 30.0%
GTGCTTCATAAATTGCAATT+TGG + chr2_3:19286648-19286667 None:intergenic 30.0%
! AGAGAATGTAGAGAAAGTTT+TGG - chr2_3:19286902-19286921 Msa0282860:intron 30.0%
!!! AGAAAGTTTTGGATGAAGTA+AGG - chr2_3:19286913-19286932 Msa0282860:intron 30.0%
TCAACCATGACATTAAAGAT+GGG - chr2_3:19287035-19287054 Msa0282860:intron 30.0%
!! GCTTTTATGTTTTGTTACGA+AGG + chr2_3:19287227-19287246 None:intergenic 30.0%
! CGCTATTCTTGAGATTTTAT+GGG + chr2_3:19287255-19287274 None:intergenic 30.0%
! ACGCTATTCTTGAGATTTTA+TGG + chr2_3:19287256-19287275 None:intergenic 30.0%
ACTAAGTTGTTTATCCAAAC+AGG - chr2_3:19287311-19287330 Msa0282860:CDS 30.0%
TTGTTGCTAGAGTTAAAAAC+TGG - chr2_3:19287953-19287972 Msa0282860:five_prime_UTR 30.0%
TTATTCTTATGGTAGCTTTC+TGG - chr2_3:19286006-19286025 Msa0282860:three_prime_UTR 30.0%
TATTACTCACACTCAAATGT+TGG - chr2_3:19286038-19286057 Msa0282860:CDS 30.0%
ATTACTCACACTCAAATGTT+GGG - chr2_3:19286039-19286058 Msa0282860:CDS 30.0%
TTGGACAATAATCTATGAGA+TGG + chr2_3:19286132-19286151 None:intergenic 30.0%
TTCTTGAAGAATCTTATAGC+AGG - chr2_3:19286325-19286344 Msa0282860:intron 30.0%
GTGCTTCATAAATTGCAATT+TGG + chr2_3:19286648-19286667 None:intergenic 30.0%
! AGAGAATGTAGAGAAAGTTT+TGG - chr2_3:19286902-19286921 Msa0282860:intron 30.0%
!!! AGAAAGTTTTGGATGAAGTA+AGG - chr2_3:19286913-19286932 Msa0282860:intron 30.0%
TCAACCATGACATTAAAGAT+GGG - chr2_3:19287035-19287054 Msa0282860:intron 30.0%
!! GCTTTTATGTTTTGTTACGA+AGG + chr2_3:19287227-19287246 None:intergenic 30.0%
! CGCTATTCTTGAGATTTTAT+GGG + chr2_3:19287255-19287274 None:intergenic 30.0%
! ACGCTATTCTTGAGATTTTA+TGG + chr2_3:19287256-19287275 None:intergenic 30.0%
ACTAAGTTGTTTATCCAAAC+AGG - chr2_3:19287311-19287330 Msa0282860:CDS 30.0%
TTGTTGCTAGAGTTAAAAAC+TGG - chr2_3:19287953-19287972 Msa0282860:five_prime_UTR 30.0%
AGAAGGTCATAAGATGGAAA+AGG - chr2_3:19285750-19285769 Msa0282860:three_prime_UTR 35.0%
GAAACACACAAGCTACATAA+AGG + chr2_3:19285817-19285836 None:intergenic 35.0%
TATCGTATGAAACTCAGACA+CGG + chr2_3:19286254-19286273 None:intergenic 35.0%
!! AATGAGAGTTGTTTTCTGAG+AGG - chr2_3:19286367-19286386 Msa0282860:intron 35.0%
GTTGTTATCCTCAAACTACA+AGG - chr2_3:19286990-19287009 Msa0282860:intron 35.0%
TTTAATGTCATGGTTGAGCT+AGG + chr2_3:19287032-19287051 None:intergenic 35.0%
CTCAACCATGACATTAAAGA+TGG - chr2_3:19287034-19287053 Msa0282860:intron 35.0%
CAACCATGACATTAAAGATG+GGG - chr2_3:19287036-19287055 Msa0282860:intron 35.0%
CGATAAGATTCCAGAAATCT+TGG - chr2_3:19287076-19287095 Msa0282860:intron 35.0%
TAAGATTCCAGAAATCTTGG+AGG - chr2_3:19287079-19287098 Msa0282860:intron 35.0%
AACGCAAGAAATGATGCATA+AGG + chr2_3:19287178-19287197 None:intergenic 35.0%
GAAAACAGTTTGACCTGATA+CGG - chr2_3:19287278-19287297 Msa0282860:CDS 35.0%
TTGTGAACTTAGATCCTGTT+TGG + chr2_3:19287328-19287347 None:intergenic 35.0%
AGACCATATCTTATTGGAAC+TGG - chr2_3:19287524-19287543 Msa0282860:intron 35.0%
GACCATATCTTATTGGAACT+GGG - chr2_3:19287525-19287544 Msa0282860:intron 35.0%
ACCATATCTTATTGGAACTG+GGG - chr2_3:19287526-19287545 Msa0282860:intron 35.0%
TCAGTGTCAGTTACTCTAAT+AGG - chr2_3:19287799-19287818 Msa0282860:five_prime_UTR 35.0%
AGAAGGTCATAAGATGGAAA+AGG - chr2_3:19285750-19285769 Msa0282860:three_prime_UTR 35.0%
GAAACACACAAGCTACATAA+AGG + chr2_3:19285817-19285836 None:intergenic 35.0%
TATCGTATGAAACTCAGACA+CGG + chr2_3:19286254-19286273 None:intergenic 35.0%
!! AATGAGAGTTGTTTTCTGAG+AGG - chr2_3:19286367-19286386 Msa0282860:intron 35.0%
GTTGTTATCCTCAAACTACA+AGG - chr2_3:19286990-19287009 Msa0282860:intron 35.0%
TTTAATGTCATGGTTGAGCT+AGG + chr2_3:19287032-19287051 None:intergenic 35.0%
CTCAACCATGACATTAAAGA+TGG - chr2_3:19287034-19287053 Msa0282860:intron 35.0%
CAACCATGACATTAAAGATG+GGG - chr2_3:19287036-19287055 Msa0282860:intron 35.0%
CGATAAGATTCCAGAAATCT+TGG - chr2_3:19287076-19287095 Msa0282860:intron 35.0%
TAAGATTCCAGAAATCTTGG+AGG - chr2_3:19287079-19287098 Msa0282860:intron 35.0%
AACGCAAGAAATGATGCATA+AGG + chr2_3:19287178-19287197 None:intergenic 35.0%
GAAAACAGTTTGACCTGATA+CGG - chr2_3:19287278-19287297 Msa0282860:CDS 35.0%
TTGTGAACTTAGATCCTGTT+TGG + chr2_3:19287328-19287347 None:intergenic 35.0%
AGACCATATCTTATTGGAAC+TGG - chr2_3:19287524-19287543 Msa0282860:intron 35.0%
GACCATATCTTATTGGAACT+GGG - chr2_3:19287525-19287544 Msa0282860:intron 35.0%
ACCATATCTTATTGGAACTG+GGG - chr2_3:19287526-19287545 Msa0282860:intron 35.0%
TCAGTGTCAGTTACTCTAAT+AGG - chr2_3:19287799-19287818 Msa0282860:five_prime_UTR 35.0%
AGGAAACTGTGTGAGAGAAT+TGG + chr2_3:19285797-19285816 None:intergenic 40.0%
!! GATTTGAGGCATTGAGTTGT+AGG + chr2_3:19286081-19286100 None:intergenic 40.0%
GGAACATGAACTAAGAGAAG+TGG + chr2_3:19286177-19286196 None:intergenic 40.0%
!! GAAGAACCTGCTTTGTTTCT+TGG + chr2_3:19286442-19286461 None:intergenic 40.0%
AACATGTGTCAGTGTCATGT+TGG - chr2_3:19286708-19286727 Msa0282860:CDS 40.0%
TTAGTGTCTGACATGTGTCA+GGG + chr2_3:19286741-19286760 None:intergenic 40.0%
TTTAGTGTCTGACATGTGTC+AGG + chr2_3:19286742-19286761 None:intergenic 40.0%
TCAGTGCTACATAGCTTACA+AGG - chr2_3:19286782-19286801 Msa0282860:CDS 40.0%
CAGTGCTACATAGCTTACAA+GGG - chr2_3:19286783-19286802 Msa0282860:CDS 40.0%
TCTACATTCTCTTCTGTCAG+TGG + chr2_3:19286894-19286913 None:intergenic 40.0%
GATCCCCATCTTTAATGTCA+TGG + chr2_3:19287042-19287061 None:intergenic 40.0%
TGTTCAACCTCCAAGATTTC+TGG + chr2_3:19287089-19287108 None:intergenic 40.0%
CAGATACTAGATACTGAGAC+TGG - chr2_3:19287107-19287126 Msa0282860:intron 40.0%
AGTTAAGCACTTACCGTATC+AGG + chr2_3:19287294-19287313 None:intergenic 40.0%
CCATATCTTATTGGAACTGG+GGG - chr2_3:19287527-19287546 Msa0282860:intron 40.0%
ATCGTTAAAGTTCGGCTAAG+TGG - chr2_3:19287584-19287603 Msa0282860:CDS 40.0%
AGTCCTCGCAATTAAATTCG+CGG + chr2_3:19287866-19287885 None:intergenic 40.0%
AGAGTTAAAAACTGGCTGTG+TGG - chr2_3:19287961-19287980 Msa0282860:five_prime_UTR 40.0%
AGGAAACTGTGTGAGAGAAT+TGG + chr2_3:19285797-19285816 None:intergenic 40.0%
!! GATTTGAGGCATTGAGTTGT+AGG + chr2_3:19286081-19286100 None:intergenic 40.0%
GGAACATGAACTAAGAGAAG+TGG + chr2_3:19286177-19286196 None:intergenic 40.0%
!! GAAGAACCTGCTTTGTTTCT+TGG + chr2_3:19286442-19286461 None:intergenic 40.0%
AACATGTGTCAGTGTCATGT+TGG - chr2_3:19286708-19286727 Msa0282860:CDS 40.0%
TTAGTGTCTGACATGTGTCA+GGG + chr2_3:19286741-19286760 None:intergenic 40.0%
TTTAGTGTCTGACATGTGTC+AGG + chr2_3:19286742-19286761 None:intergenic 40.0%
TCAGTGCTACATAGCTTACA+AGG - chr2_3:19286782-19286801 Msa0282860:CDS 40.0%
CAGTGCTACATAGCTTACAA+GGG - chr2_3:19286783-19286802 Msa0282860:CDS 40.0%
TCTACATTCTCTTCTGTCAG+TGG + chr2_3:19286894-19286913 None:intergenic 40.0%
GATCCCCATCTTTAATGTCA+TGG + chr2_3:19287042-19287061 None:intergenic 40.0%
TGTTCAACCTCCAAGATTTC+TGG + chr2_3:19287089-19287108 None:intergenic 40.0%
CAGATACTAGATACTGAGAC+TGG - chr2_3:19287107-19287126 Msa0282860:intron 40.0%
AGTTAAGCACTTACCGTATC+AGG + chr2_3:19287294-19287313 None:intergenic 40.0%
CCATATCTTATTGGAACTGG+GGG - chr2_3:19287527-19287546 Msa0282860:intron 40.0%
ATCGTTAAAGTTCGGCTAAG+TGG - chr2_3:19287584-19287603 Msa0282860:CDS 40.0%
AGTCCTCGCAATTAAATTCG+CGG + chr2_3:19287866-19287885 None:intergenic 40.0%
ACTCACACTCAAATGTTGGG+TGG - chr2_3:19286042-19286061 Msa0282860:CDS 45.0%
CTAAACACGTCGTCAATCCA+AGG - chr2_3:19286757-19286776 Msa0282860:CDS 45.0%
!! GTTTTGGATGAAGTAAGGCC+TGG - chr2_3:19286918-19286937 Msa0282860:intron 45.0%
! TGAAGTAAGGCCTGGTTTGA+TGG - chr2_3:19286926-19286945 Msa0282860:intron 45.0%
GTGGCATTGCATGAGATAGA+TGG - chr2_3:19286963-19286982 Msa0282860:intron 45.0%
CCCCCAGTTCCAATAAGATA+TGG + chr2_3:19287530-19287549 None:intergenic 45.0%
TATCTTATTGGAACTGGGGG+AGG - chr2_3:19287530-19287549 Msa0282860:intron 45.0%
TAAAGTTCGGCTAAGTGGAC+CGG - chr2_3:19287589-19287608 Msa0282860:CDS 45.0%
AACCCGCGAATTTAATTGCG+AGG - chr2_3:19287860-19287879 Msa0282860:five_prime_UTR 45.0%
GTCCTCGCAATTAAATTCGC+GGG + chr2_3:19287865-19287884 None:intergenic 45.0%
ACTCACACTCAAATGTTGGG+TGG - chr2_3:19286042-19286061 Msa0282860:CDS 45.0%
CTAAACACGTCGTCAATCCA+AGG - chr2_3:19286757-19286776 Msa0282860:CDS 45.0%
!! GTTTTGGATGAAGTAAGGCC+TGG - chr2_3:19286918-19286937 Msa0282860:intron 45.0%
! TGAAGTAAGGCCTGGTTTGA+TGG - chr2_3:19286926-19286945 Msa0282860:intron 45.0%
GTGGCATTGCATGAGATAGA+TGG - chr2_3:19286963-19286982 Msa0282860:intron 45.0%
CCCCCAGTTCCAATAAGATA+TGG + chr2_3:19287530-19287549 None:intergenic 45.0%
TATCTTATTGGAACTGGGGG+AGG - chr2_3:19287530-19287549 Msa0282860:intron 45.0%
TAAAGTTCGGCTAAGTGGAC+CGG - chr2_3:19287589-19287608 Msa0282860:CDS 45.0%
AACCCGCGAATTTAATTGCG+AGG - chr2_3:19287860-19287879 Msa0282860:five_prime_UTR 45.0%
GTCCTCGCAATTAAATTCGC+GGG + chr2_3:19287865-19287884 None:intergenic 45.0%
CGAGCTCCAAGAAACAAAGC+AGG - chr2_3:19286433-19286452 Msa0282860:intron 50.0%
!! GCTATGTAGCACTGACACCT+TGG + chr2_3:19286777-19286796 None:intergenic 50.0%
CATTCTCTTCTGTCAGTGGC+AGG + chr2_3:19286890-19286909 None:intergenic 50.0%
! CTGGTTTGATGGCTGATGGA+GGG - chr2_3:19286937-19286956 Msa0282860:intron 50.0%
CACACGCTCCTTGTAGTTTG+AGG + chr2_3:19287001-19287020 None:intergenic 50.0%
! CTCAAACTACAAGGAGCGTG+TGG - chr2_3:19286999-19287018 Msa0282860:intron 50.0%
ACTGTCATAACTCCTGCTGC+CGG + chr2_3:19287611-19287630 None:intergenic 50.0%
AGCTGCACAGCAGCAATAGA+AGG + chr2_3:19287671-19287690 None:intergenic 50.0%
CGAGCTCCAAGAAACAAAGC+AGG - chr2_3:19286433-19286452 Msa0282860:intron 50.0%
!! GCTATGTAGCACTGACACCT+TGG + chr2_3:19286777-19286796 None:intergenic 50.0%
CATTCTCTTCTGTCAGTGGC+AGG + chr2_3:19286890-19286909 None:intergenic 50.0%
! CTGGTTTGATGGCTGATGGA+GGG - chr2_3:19286937-19286956 Msa0282860:intron 50.0%
CACACGCTCCTTGTAGTTTG+AGG + chr2_3:19287001-19287020 None:intergenic 50.0%
! CTCAAACTACAAGGAGCGTG+TGG - chr2_3:19286999-19287018 Msa0282860:intron 50.0%
ACTGTCATAACTCCTGCTGC+CGG + chr2_3:19287611-19287630 None:intergenic 50.0%
AGCTGCACAGCAGCAATAGA+AGG + chr2_3:19287671-19287690 None:intergenic 50.0%
GTCAGTGGCAGGACACATCT+CGG + chr2_3:19286879-19286898 None:intergenic 55.0%
! AGGCCTGGTTTGATGGCTGA+TGG - chr2_3:19286933-19286952 Msa0282860:intron 55.0%
CCTCCATCAGCCATCAAACC+AGG + chr2_3:19286939-19286958 None:intergenic 55.0%
! CCTGGTTTGATGGCTGATGG+AGG - chr2_3:19286936-19286955 Msa0282860:intron 55.0%
GATGGCTGATGGAGGGAATG+TGG - chr2_3:19286944-19286963 Msa0282860:intron 55.0%
GTCAGTGGCAGGACACATCT+CGG + chr2_3:19286879-19286898 None:intergenic 55.0%
! AGGCCTGGTTTGATGGCTGA+TGG - chr2_3:19286933-19286952 Msa0282860:intron 55.0%
CCTCCATCAGCCATCAAACC+AGG + chr2_3:19286939-19286958 None:intergenic 55.0%
! CCTGGTTTGATGGCTGATGG+AGG - chr2_3:19286936-19286955 Msa0282860:intron 55.0%
GATGGCTGATGGAGGGAATG+TGG - chr2_3:19286944-19286963 Msa0282860:intron 55.0%
CGGCTAAGTGGACCGGCAGC+AGG - chr2_3:19287596-19287615 Msa0282860:CDS 70.0%
CGGCTAAGTGGACCGGCAGC+AGG - chr2_3:19287596-19287615 Msa0282860:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 19285748 19287982 19285748 ID=Msa0282860;Name=Msa0282860
chr2_3 mRNA 19285748 19287982 19285748 ID=Msa0282860-mRNA-1;Parent=Msa0282860;Name=Msa0282860-mRNA-1;_AED=0.18;_eAED=0.18;_QI=306|1|1|1|1|1|4|282|242
chr2_3 exon 19285748 19286221 19285748 ID=Msa0282860-mRNA-1:exon:7761;Parent=Msa0282860-mRNA-1
chr2_3 exon 19286570 19286868 19286570 ID=Msa0282860-mRNA-1:exon:7760;Parent=Msa0282860-mRNA-1
chr2_3 exon 19287276 19287396 19287276 ID=Msa0282860-mRNA-1:exon:7759;Parent=Msa0282860-mRNA-1
chr2_3 exon 19287560 19287982 19287560 ID=Msa0282860-mRNA-1:exon:7758;Parent=Msa0282860-mRNA-1
chr2_3 five_prime_UTR 19287677 19287982 19287677 ID=Msa0282860-mRNA-1:five_prime_utr;Parent=Msa0282860-mRNA-1
chr2_3 CDS 19287560 19287676 19287560 ID=Msa0282860-mRNA-1:cds;Parent=Msa0282860-mRNA-1
chr2_3 CDS 19287276 19287396 19287276 ID=Msa0282860-mRNA-1:cds;Parent=Msa0282860-mRNA-1
chr2_3 CDS 19286570 19286868 19286570 ID=Msa0282860-mRNA-1:cds;Parent=Msa0282860-mRNA-1
chr2_3 CDS 19286030 19286221 19286030 ID=Msa0282860-mRNA-1:cds;Parent=Msa0282860-mRNA-1
chr2_3 three_prime_UTR 19285748 19286029 19285748 ID=Msa0282860-mRNA-1:three_prime_utr;Parent=Msa0282860-mRNA-1
Gene Sequence

>Msa0282860

ATGTTGGGTGGTTCATTCTCAACTCCTACAACTCAATGCCTCAAATCAACAAAAACAACAATTACAATGCTTTATCCATCTCATAGATTATTGTCCAAACATTTTTGTCTCTTTAAGAATCTTATAGCAGGTAATAGAAGATTTTCATCAAATGAGAGTTGTTTTCTGAGAGGTCACCAAATTAATATTAAGCAAGTTTTTGGGCTTATCTCTCGTCGAGCTCCAAGAAACAAAGCAGGACTTTTTGTTTCTCCGAGATGTGTCCTGCCACTGACAGAAGAGAATGTAGAGAAAGTTTTGGATGAAGTAAGGCCTGGTTTGATGGCTGATGGAGGGAATGTGGCATTGCATGAGATAGATGGTCTTGTTGTTATCCTCAAACTACAAGGAGCGTGTGGATCATGTCCTAGCTCAACCATGACATTAAAGATGGGGATCGAAACTCGTCTTCGCGATAAGATTCCAGAAATCTTGGAGGTTGAACAGATACTAGATACTGAGACTGGTCTTGAGTTAACTGAAGAAAATGTTGAAAGTGTTCTTTCAGAAATTAGACCATATCTTATTGGAACTGGGGGAGGAACATTAGAGCTTGTTGAGATTAATGATTACATCGTTAAAGTTCGGCTAAGTGGACCGGCAGCAGGAGTTATGACAGTTCGTGTTGCGTTAACGCAGAAGCTGAGAGACAAGATACCTTCTATTGCTGCTGTGCAGCTAATAGAATGA

Protein sequence

>Msa0282860

MLGGSFSTPTTQCLKSTKTTITMLYPSHRLLSKHFCLFKNLIAGNRRFSSNESCFLRGHQINIKQVFGLISRRAPRNKAGLFVSPRCVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELTEENVESVLSEIRPYLIGTGGGTLELVEINDYIVKVRLSGPAAGVMTVRVALTQKLRDKIPSIAAVQLIE*