AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1151120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1151120 MtrunA17_Chr7g0241071 99.027 411 4 0 1 411 1 411 0.0 836
Msa1151120 MtrunA17_Chr2g0278581 50.877 342 150 2 71 411 11 335 1.02e-116 343
Msa1151120 MtrunA17_Chr6g0463901 50.000 342 153 2 71 411 11 335 2.76e-114 337
Msa1151120 MtrunA17_Chr4g0049821 44.970 338 163 7 73 409 70 385 1.55e-93 286
Msa1151120 MtrunA17_Chr3g0113101 28.720 289 171 9 125 410 115 371 7.01e-20 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1151120 AT3G54050.2 82.234 394 58 3 28 411 26 417 0.0 660
Msa1151120 AT3G54050.1 82.234 394 58 3 28 411 26 417 0.0 660
Msa1151120 AT1G43670.1 49.415 342 155 3 71 411 11 335 1.35e-112 333
Msa1151120 AT5G64380.1 47.059 323 147 7 91 409 89 391 4.85e-90 278
Msa1151120 AT3G55800.1 29.341 334 179 15 89 410 90 378 1.99e-21 95.9

Find 111 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTCTATGGTGGCATTTA+TGG 0.100293 7_4:+35327630 Msa1151120:CDS
CATTGAGGAAATGTGATTTA+AGG 0.224041 7_4:-35328630 None:intergenic
CCAATATACCTTGCTGAATA+AGG 0.237180 7_4:-35327579 None:intergenic
ATGTAAACAGATTGCTTCTT+TGG 0.237903 7_4:+35325994 Msa1151120:CDS
CGTAATGGTTTGTGATACTA+TGG 0.250976 7_4:-35325570 None:intergenic
GCTAATATTTCTAACCTTAC+TGG 0.275094 7_4:+35326025 Msa1151120:CDS
CCTTATTCAGCAAGGTATAT+TGG 0.303464 7_4:+35327579 Msa1151120:CDS
GCAGTAGAAGAGAGTTATTC+AGG 0.314426 7_4:+35326586 Msa1151120:CDS
CATAAACGTGAGGGAGAATA+TGG 0.326105 7_4:-35325740 None:intergenic
ATGAAGGGAATTACAAGTTA+TGG 0.331893 7_4:+35327499 Msa1151120:CDS
GTGGTCTTTGATCCACTTGA+TGG 0.340444 7_4:+35326619 Msa1151120:CDS
GGACACTGCAGCATCGATAT+TGG 0.345508 7_4:-35326647 None:intergenic
ATGTTCTATGAAACTTGTTA+TGG 0.349558 7_4:+35328450 Msa1151120:three_prime_UTR
AGCAAGGTATATTGGTAGTT+TGG 0.355656 7_4:+35327587 Msa1151120:CDS
GCTGCTAGAAGGTTGCTTCC+TGG 0.357718 7_4:-35327327 None:intergenic
CATGGATGGATTGTGTTCTA+AGG 0.361431 7_4:-35325620 None:intergenic
AATGAGTTTCATTGTAGAAC+AGG 0.377561 7_4:+35327713 Msa1151120:CDS
TTCACATTAGATCCAATGTA+TGG 0.380685 7_4:+35327414 Msa1151120:CDS
AATCTCCAAATACCGAAATC+AGG 0.381783 7_4:+35327459 Msa1151120:CDS
TCTAACCTTACTGGTGTTCA+AGG 0.382052 7_4:+35326034 Msa1151120:CDS
CTCAAGGAACCAGGTTCTAA+TGG 0.388835 7_4:+35327552 Msa1151120:CDS
TTGAAGGAAAAGAGATTGTA+AGG 0.398053 7_4:-35325595 None:intergenic
TTCCATAGGACACTGCTCTA+TGG 0.398346 7_4:+35327618 Msa1151120:CDS
GTAATCTTTGTTCTAACAAT+CGG 0.407535 7_4:+35327375 Msa1151120:CDS
AAAATATATTCTTTCAATGA+AGG 0.413500 7_4:+35327483 Msa1151120:CDS
AGCTTATAACATTGACAAGT+TGG 0.420184 7_4:+35325900 Msa1151120:CDS
TCAGCAAGACACTCATCATT+GGG 0.420252 7_4:-35326697 None:intergenic
TGAAGGGAATTACAAGTTAT+GGG 0.423627 7_4:+35327500 Msa1151120:CDS
GTCAGCAAGACACTCATCAT+TGG 0.424092 7_4:-35326698 None:intergenic
TTGTTGAAGCAAGAACAAAC+AGG 0.433134 7_4:+35325923 Msa1151120:CDS
CAAGGTGCTGTAAATATTCA+AGG 0.437548 7_4:+35326052 Msa1151120:CDS
TTTGCAATAGAGAAATGAAA+AGG 0.448596 7_4:-35328514 None:intergenic
GTAGAACAGGCTGGTGGAAA+AGG 0.450058 7_4:+35327726 Msa1151120:CDS
TGCAGTAACCAGCTGCTAGA+AGG 0.454204 7_4:-35327338 None:intergenic
TCAAATTGTTTGAGGTCAAG+TGG 0.463529 7_4:+35326520 Msa1151120:CDS
TTGAGGTCAAGTGGGAGGAC+AGG 0.467538 7_4:+35326529 Msa1151120:CDS
AGAGATTGTAAGGTTCGTAA+TGG 0.469758 7_4:-35325585 None:intergenic
CATTGGGAGCACAGAGGAAG+TGG 0.471616 7_4:+35328364 Msa1151120:CDS
ATTGTGTTCTAAGGTATTGA+AGG 0.476399 7_4:-35325611 None:intergenic
AGGTATTCTCAAATTGTTTG+AGG 0.481726 7_4:+35326512 Msa1151120:intron
AACGTGTTCCACTGTACATT+GGG 0.482493 7_4:+35328348 Msa1151120:CDS
TGTTCTACAATGAAACTCAT+TGG 0.490655 7_4:-35327711 None:intergenic
TGTAAGTAAAGTATGCATAA+AGG 0.493336 7_4:+35328651 Msa1151120:three_prime_UTR
CTAGAAGGTTGCTTCCTGGT+TGG 0.494022 7_4:-35327323 None:intergenic
TGCATACTTTACTTACATTG+AGG 0.501124 7_4:-35328645 None:intergenic
AGGTATATTGGTAGTTTGGT+AGG 0.501227 7_4:+35327591 Msa1151120:CDS
GTTTGGTAGGTGATTTCCAT+AGG 0.501579 7_4:+35327604 Msa1151120:CDS
AATGTGATTTAAGGAAGGCT+TGG 0.502137 7_4:-35328621 None:intergenic
AAAGTAAGAATGGAAAGCTT+AGG 0.504829 7_4:+35327670 Msa1151120:CDS
CAGCACCTTGAACACCAGTA+AGG 0.507446 7_4:-35326039 None:intergenic
TCGAAGACACAAAGTTGAAA+AGG 0.507827 7_4:-35325764 None:intergenic
GGAGAAAGTTGAAAAGTACT+TGG 0.510521 7_4:+35328385 Msa1151120:CDS
CACCATAGAGCAGTGTCCTA+TGG 0.514948 7_4:-35327620 None:intergenic
AGGGACAAGAAAAGTAAGAA+TGG 0.516753 7_4:+35327660 Msa1151120:CDS
TATAGGCAACAACACCTTAG+TGG 0.518250 7_4:-35328680 None:intergenic
AAATATATTCTTTCAATGAA+GGG 0.518944 7_4:+35327484 Msa1151120:CDS
TTGCAATAGAGAAATGAAAA+GGG 0.521453 7_4:-35328513 None:intergenic
ATCGATGCTGCAGTGTCCAC+CGG 0.534943 7_4:+35326652 Msa1151120:CDS
TGAGGTCAAGTGGGAGGACA+GGG 0.535207 7_4:+35326530 Msa1151120:CDS
GGAAGCAACCTTCTAGCAGC+TGG 0.536054 7_4:+35327330 Msa1151120:CDS
GAGGAAATGTGATTTAAGGA+AGG 0.537049 7_4:-35328626 None:intergenic
CATAAAGGTCTTAACCACTA+AGG 0.541095 7_4:+35328666 Msa1151120:three_prime_UTR
CAACGTGTTCCACTGTACAT+TGG 0.541762 7_4:+35328347 Msa1151120:CDS
AAAACAAATTCCCCATACAT+TGG 0.543202 7_4:-35327426 None:intergenic
CAAATTGTTTGAGGTCAAGT+GGG 0.545156 7_4:+35326521 Msa1151120:CDS
ATGATATGAAGAAGATAAGT+GGG 0.546728 7_4:+35325545 Msa1151120:five_prime_UTR
TAAGGTTTGCCATTAGAACC+TGG 0.547362 7_4:-35327561 None:intergenic
TAACTCTCTTCTACTGCCAC+TGG 0.547536 7_4:-35326580 None:intergenic
GTGGCATTTATGGATACCCT+AGG 0.549002 7_4:+35327640 Msa1151120:CDS
AATGATATGAAGAAGATAAG+TGG 0.549360 7_4:+35325544 Msa1151120:five_prime_UTR
TCACATTAGATCCAATGTAT+GGG 0.550781 7_4:+35327415 Msa1151120:CDS
ATCTCCAAATACCGAAATCA+GGG 0.551752 7_4:+35327460 Msa1151120:CDS
CCAATGGTTCTGTTCTGCCA+CGG 0.552814 7_4:-35325501 None:intergenic
ACTTGATGTTGTCTCAAATG+AGG 0.561343 7_4:+35326090 Msa1151120:CDS
AGTTTCATTGTAGAACAGGC+TGG 0.569307 7_4:+35327717 Msa1151120:CDS
GTAATGGTTTGTGATACTAT+GGG 0.570536 7_4:-35325569 None:intergenic
GACAGGGATTATAGCATCAG+AGG 0.573560 7_4:+35326546 Msa1151120:CDS
CCGTGGCAGAACAGAACCAT+TGG 0.578712 7_4:+35325501 None:intergenic
GCTGGTGGAAAAGGTTCAGA+TGG 0.579726 7_4:+35327735 Msa1151120:CDS
ATTGTGAATGTGTGCCAACC+AGG 0.580359 7_4:+35327309 Msa1151120:CDS
CATTCGACACTTACTTCGGT+GGG 0.582856 7_4:-35327783 None:intergenic
TGATGAATGAGTTGCATGGA+TGG 0.583559 7_4:-35325634 None:intergenic
TCATTCGACACTTACTTCGG+TGG 0.583933 7_4:-35327784 None:intergenic
ATCGATGATCTCAAGGAACC+AGG 0.584338 7_4:+35327543 Msa1151120:CDS
TGCTGTAAATATTCAAGGGG+AGG 0.587683 7_4:+35326057 Msa1151120:CDS
GAAATACATCGATGATCTCA+AGG 0.591810 7_4:+35327536 Msa1151120:CDS
CTCTGGAGGAGTGAGATGCA+TGG 0.594547 7_4:+35325832 Msa1151120:CDS
AAGGTGCTGTAAATATTCAA+GGG 0.595137 7_4:+35326053 Msa1151120:CDS
AAGCATGTGAGTGGCTCTGG+AGG 0.595509 7_4:+35325818 Msa1151120:CDS
TTTGTTCTAACAATCGGCAA+AGG 0.598066 7_4:+35327381 Msa1151120:CDS
CACATTAGATCCAATGTATG+GGG 0.608841 7_4:+35327416 Msa1151120:CDS
TTCATTGTAGAACAGGCTGG+TGG 0.611027 7_4:+35327720 Msa1151120:CDS
TGTTGAAGCAAGAACAAACA+GGG 0.616718 7_4:+35325924 Msa1151120:CDS
AGAGGAAGAAGATGTGCCAG+TGG 0.616813 7_4:+35326564 Msa1151120:CDS
CATAGGACACTGCTCTATGG+TGG 0.623379 7_4:+35327621 Msa1151120:CDS
GGCTGTTGGTGAAGTAGCTG+CGG 0.625568 7_4:+35325853 Msa1151120:CDS
TGAAAAGGACATAAACGTGA+GGG 0.630165 7_4:-35325749 None:intergenic
ATGGCAAACCTTATTCAGCA+AGG 0.633183 7_4:+35327571 Msa1151120:CDS
ATTGTTTGAGGTCAAGTGGG+AGG 0.641340 7_4:+35326524 Msa1151120:CDS
ATATTGGATGAACCATCAAG+TGG 0.643892 7_4:-35326631 None:intergenic
TTGAAAAGGACATAAACGTG+AGG 0.652312 7_4:-35325750 None:intergenic
GGAGTGAGATGCATGGCTGT+TGG 0.653986 7_4:+35325839 Msa1151120:CDS
TCTGTGCTCCCAATGTACAG+TGG 0.654161 7_4:-35328356 None:intergenic
TGGCATTTATGGATACCCTA+GGG 0.657149 7_4:+35327641 Msa1151120:CDS
AGGTGCTGTAAATATTCAAG+GGG 0.670231 7_4:+35326054 Msa1151120:CDS
CTAGTGATGAATGAGTTGCA+TGG 0.675084 7_4:-35325638 None:intergenic
CAGCAAGACACTCATCATTG+GGG 0.711192 7_4:-35326696 None:intergenic
TTATTCAGGAAACTACATTG+TGG 0.717533 7_4:+35326600 Msa1151120:CDS
GATGAGTGTCTTGCTGACGT+TGG 0.721138 7_4:+35326703 Msa1151120:CDS
GTTGAAGCAAGAACAAACAG+GGG 0.727918 7_4:+35325925 Msa1151120:CDS
ACTGTACATTGGGAGCACAG+AGG 0.776186 7_4:+35328358 Msa1151120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACTATTATATTTTTATCA+TGG - chr7_4:35328267-35328286 None:intergenic 10.0%
!! ATATAATAGTTTATGATAAA+TGG + chr7_4:35328275-35328294 Msa1151120:intron 10.0%
!!! TATTTAATTAGTTTTGAACT+AGG + chr7_4:35326127-35326146 Msa1151120:intron 15.0%
!!! ATTTAATTAGTTTTGAACTA+GGG + chr7_4:35326128-35326147 Msa1151120:intron 15.0%
!! AAAATATATTCTTTCAATGA+AGG + chr7_4:35327483-35327502 Msa1151120:CDS 15.0%
!! AAATATATTCTTTCAATGAA+GGG + chr7_4:35327484-35327503 Msa1151120:CDS 15.0%
!!! ATTTAATTTTCCCTTTTTTT+TGG + chr7_4:35328314-35328333 Msa1151120:intron 15.0%
!! ATTCAAAATGATTGTAATTG+AGG - chr7_4:35326279-35326298 None:intergenic 20.0%
!! AATTGAAGCATATTTAACAA+GGG - chr7_4:35326365-35326384 None:intergenic 20.0%
!!! ATGATTTTGCAATTTGAATT+TGG - chr7_4:35326410-35326429 None:intergenic 20.0%
!!! TTGTTTTCTATTTTTTGTTC+AGG + chr7_4:35326492-35326511 Msa1151120:intron 20.0%
!!! GATTGTTTTCATTTATGATT+AGG + chr7_4:35326769-35326788 Msa1151120:intron 20.0%
!! AAAAAAACGAAAAGTAAGAA+CGG - chr7_4:35327109-35327128 None:intergenic 20.0%
!! TTAAGTAGTTTATCTAAACA+AGG - chr7_4:35327816-35327835 None:intergenic 20.0%
!!! ATCATTTTGCTTTTTACTTG+TGG - chr7_4:35325530-35325549 None:intergenic 25.0%
! AATGATATGAAGAAGATAAG+TGG + chr7_4:35325544-35325563 Msa1151120:five_prime_UTR 25.0%
! ATGATATGAAGAAGATAAGT+GGG + chr7_4:35325545-35325564 Msa1151120:five_prime_UTR 25.0%
! AGTGCAAAATTCAACAAAAA+TGG + chr7_4:35325670-35325689 Msa1151120:exon 25.0%
!!! TGTTTTGAATAGTATTTCGT+TGG + chr7_4:35325970-35325989 Msa1151120:CDS 25.0%
! GAATTGAAGCATATTTAACA+AGG - chr7_4:35326366-35326385 None:intergenic 25.0%
! TGCAAAATCATTTATGCTAA+AGG + chr7_4:35326419-35326438 Msa1151120:intron 25.0%
! AAAAAACGAAAAGTAAGAAC+GGG - chr7_4:35327108-35327127 None:intergenic 25.0%
! GTAATCTTTGTTCTAACAAT+CGG + chr7_4:35327375-35327394 Msa1151120:CDS 25.0%
!! GAATATATTTTCCCTGATTT+CGG - chr7_4:35327474-35327493 None:intergenic 25.0%
! TAATTAAGCGCTTATAGTTT+AGG + chr7_4:35327833-35327852 Msa1151120:intron 25.0%
!!! TAAGTAATTTTGGAGAGTTT+AGG + chr7_4:35327949-35327968 Msa1151120:intron 25.0%
!!! AAGTAATTTTGGAGAGTTTA+GGG + chr7_4:35327950-35327969 Msa1151120:intron 25.0%
! TAAGTACTTAAAAGACTGTT+TGG - chr7_4:35328029-35328048 None:intergenic 25.0%
! TCAAATAAGTCAATTCAAAC+AGG + chr7_4:35328064-35328083 Msa1151120:intron 25.0%
! GTTTATGATAAATGGTATGA+TGG + chr7_4:35328283-35328302 Msa1151120:intron 25.0%
! ATGAATCTGTCCAAAAAAAA+GGG - chr7_4:35328327-35328346 None:intergenic 25.0%
!!! ATGTTCTATGAAACTTGTTA+TGG + chr7_4:35328450-35328469 Msa1151120:three_prime_UTR 25.0%
! TTGCAATAGAGAAATGAAAA+GGG - chr7_4:35328516-35328535 None:intergenic 25.0%
! TTTGCAATAGAGAAATGAAA+AGG - chr7_4:35328517-35328536 None:intergenic 25.0%
! TGTAAGTAAAGTATGCATAA+AGG + chr7_4:35328651-35328670 Msa1151120:three_prime_UTR 25.0%
! TTTTTACTTGTGGATTCCAA+TGG - chr7_4:35325520-35325539 None:intergenic 30.0%
! GTAATGGTTTGTGATACTAT+GGG - chr7_4:35325572-35325591 None:intergenic 30.0%
TTGAAGGAAAAGAGATTGTA+AGG - chr7_4:35325598-35325617 None:intergenic 30.0%
!! ATTGTGTTCTAAGGTATTGA+AGG - chr7_4:35325614-35325633 None:intergenic 30.0%
TTCAACAAAAATGGTTGCAA+TGG + chr7_4:35325679-35325698 Msa1151120:exon 30.0%
AGCTTATAACATTGACAAGT+TGG + chr7_4:35325900-35325919 Msa1151120:CDS 30.0%
ATGTAAACAGATTGCTTCTT+TGG + chr7_4:35325994-35326013 Msa1151120:CDS 30.0%
! GCTAATATTTCTAACCTTAC+TGG + chr7_4:35326025-35326044 Msa1151120:CDS 30.0%
!! AAGGTGCTGTAAATATTCAA+GGG + chr7_4:35326053-35326072 Msa1151120:CDS 30.0%
TTGAGACCTAAAATGTTTCA+TGG + chr7_4:35326197-35326216 Msa1151120:intron 30.0%
TTAAAAAAAATCCGCAATCG+TGG - chr7_4:35326337-35326356 None:intergenic 30.0%
AGGTATTCTCAAATTGTTTG+AGG + chr7_4:35326512-35326531 Msa1151120:intron 30.0%
TTATTCAGGAAACTACATTG+TGG + chr7_4:35326600-35326619 Msa1151120:CDS 30.0%
GTAAATTCCAAAAATGGAAC+CGG - chr7_4:35326674-35326693 None:intergenic 30.0%
TTATGATTAGGAATCGAACT+CGG + chr7_4:35326781-35326800 Msa1151120:intron 30.0%
!! AACCAAATTAAGGTGTCATT+GGG - chr7_4:35327061-35327080 None:intergenic 30.0%
! TAACCAAATTAAGGTGTCAT+TGG - chr7_4:35327062-35327081 None:intergenic 30.0%
! ACACCTTAATTTGGTTAAAC+AGG + chr7_4:35327065-35327084 Msa1151120:intron 30.0%
! CACCTTAATTTGGTTAAACA+GGG + chr7_4:35327066-35327085 Msa1151120:intron 30.0%
TATTGTGTTAAGCAATGCTT+TGG - chr7_4:35327249-35327268 None:intergenic 30.0%
TACATATGTAAATTGCAGCT+TGG + chr7_4:35327267-35327286 Msa1151120:intron 30.0%
TTCACATTAGATCCAATGTA+TGG + chr7_4:35327414-35327433 Msa1151120:CDS 30.0%
TCACATTAGATCCAATGTAT+GGG + chr7_4:35327415-35327434 Msa1151120:CDS 30.0%
AAAACAAATTCCCCATACAT+TGG - chr7_4:35327429-35327448 None:intergenic 30.0%
ATGAAGGGAATTACAAGTTA+TGG + chr7_4:35327499-35327518 Msa1151120:CDS 30.0%
TGAAGGGAATTACAAGTTAT+GGG + chr7_4:35327500-35327519 Msa1151120:CDS 30.0%
AAAGTAAGAATGGAAAGCTT+AGG + chr7_4:35327670-35327689 Msa1151120:CDS 30.0%
TGTTCTACAATGAAACTCAT+TGG - chr7_4:35327714-35327733 None:intergenic 30.0%
AATGAGTTTCATTGTAGAAC+AGG + chr7_4:35327713-35327732 Msa1151120:CDS 30.0%
!! GCTAGTTTCGTAAGTAATTT+TGG + chr7_4:35327939-35327958 Msa1151120:intron 30.0%
AATGAACTGAAATGAGCTTA+TGG + chr7_4:35327974-35327993 Msa1151120:intron 30.0%
!! ATTTTTGGACTGTTACATCA+AGG - chr7_4:35328220-35328239 None:intergenic 30.0%
ATGTAACAGTCCAAAAATTG+TGG + chr7_4:35328222-35328241 Msa1151120:intron 30.0%
ATCATGGTTTAGTAGAAGAT+CGG - chr7_4:35328251-35328270 None:intergenic 30.0%
GATGAATCTGTCCAAAAAAA+AGG - chr7_4:35328328-35328347 None:intergenic 30.0%
! GTTATGGTCAAGTGATTTTA+AGG + chr7_4:35328466-35328485 Msa1151120:three_prime_UTR 30.0%
TCTATTGCAAAGAAAAAGCA+AGG + chr7_4:35328526-35328545 Msa1151120:three_prime_UTR 30.0%
CATTGAGGAAATGTGATTTA+AGG - chr7_4:35328633-35328652 None:intergenic 30.0%
TGCATACTTTACTTACATTG+AGG - chr7_4:35328648-35328667 None:intergenic 30.0%
! CGTAATGGTTTGTGATACTA+TGG - chr7_4:35325573-35325592 None:intergenic 35.0%
AGAGATTGTAAGGTTCGTAA+TGG - chr7_4:35325588-35325607 None:intergenic 35.0%
TGAAAAGGACATAAACGTGA+GGG - chr7_4:35325752-35325771 None:intergenic 35.0%
TTGAAAAGGACATAAACGTG+AGG - chr7_4:35325753-35325772 None:intergenic 35.0%
TCGAAGACACAAAGTTGAAA+AGG - chr7_4:35325767-35325786 None:intergenic 35.0%
! TCAAGAAAAAAGCATGTGAG+TGG + chr7_4:35325809-35325828 Msa1151120:CDS 35.0%
TTGTTGAAGCAAGAACAAAC+AGG + chr7_4:35325923-35325942 Msa1151120:CDS 35.0%
TGTTGAAGCAAGAACAAACA+GGG + chr7_4:35325924-35325943 Msa1151120:CDS 35.0%
!! CAAGGTGCTGTAAATATTCA+AGG + chr7_4:35326052-35326071 Msa1151120:CDS 35.0%
! AGGTGCTGTAAATATTCAAG+GGG + chr7_4:35326054-35326073 Msa1151120:CDS 35.0%
ACTTGATGTTGTCTCAAATG+AGG + chr7_4:35326090-35326109 Msa1151120:CDS 35.0%
! TGCTAAAGGAGTGTATTAGA+AGG + chr7_4:35326433-35326452 Msa1151120:intron 35.0%
! GCTAAAGGAGTGTATTAGAA+GGG + chr7_4:35326434-35326453 Msa1151120:intron 35.0%
! GTATTAGAAGGGTTTTCTCT+TGG + chr7_4:35326445-35326464 Msa1151120:intron 35.0%
! TCAAATTGTTTGAGGTCAAG+TGG + chr7_4:35326520-35326539 Msa1151120:CDS 35.0%
! CAAATTGTTTGAGGTCAAGT+GGG + chr7_4:35326521-35326540 Msa1151120:CDS 35.0%
ATATTGGATGAACCATCAAG+TGG - chr7_4:35326634-35326653 None:intergenic 35.0%
CAAGCAACTTAGAAACCTAA+AGG + chr7_4:35326984-35327003 Msa1151120:intron 35.0%
CAACTTAGAAACCTAAAGGT+TGG + chr7_4:35326988-35327007 Msa1151120:intron 35.0%
AACTAGTTGAACCAACCTTT+AGG - chr7_4:35327002-35327021 None:intergenic 35.0%
! TAAAGGTTGGTTCAACTAGT+TGG + chr7_4:35327001-35327020 Msa1151120:intron 35.0%
! AAAGGTTGGTTCAACTAGTT+GGG + chr7_4:35327002-35327021 Msa1151120:intron 35.0%
ATCCCAATGACACCTTAATT+TGG + chr7_4:35327056-35327075 Msa1151120:intron 35.0%
AGCCCTGTTTAACCAAATTA+AGG - chr7_4:35327071-35327090 None:intergenic 35.0%
! TTCCAGTTCAAGTTCAACTA+TGG + chr7_4:35327162-35327181 Msa1151120:intron 35.0%
AACCATAGTTGAACTTGAAC+TGG - chr7_4:35327167-35327186 None:intergenic 35.0%
TTTGTTCTAACAATCGGCAA+AGG + chr7_4:35327381-35327400 Msa1151120:CDS 35.0%
CACATTAGATCCAATGTATG+GGG + chr7_4:35327416-35327435 Msa1151120:CDS 35.0%
AATCTCCAAATACCGAAATC+AGG + chr7_4:35327459-35327478 Msa1151120:CDS 35.0%
ATCTCCAAATACCGAAATCA+GGG + chr7_4:35327460-35327479 Msa1151120:CDS 35.0%
! TTTTCCCTGATTTCGGTATT+TGG - chr7_4:35327467-35327486 None:intergenic 35.0%
GAAATACATCGATGATCTCA+AGG + chr7_4:35327536-35327555 Msa1151120:CDS 35.0%
CCAATATACCTTGCTGAATA+AGG - chr7_4:35327582-35327601 None:intergenic 35.0%
CCTTATTCAGCAAGGTATAT+TGG + chr7_4:35327579-35327598 Msa1151120:CDS 35.0%
! AGCAAGGTATATTGGTAGTT+TGG + chr7_4:35327587-35327606 Msa1151120:CDS 35.0%
! AGGTATATTGGTAGTTTGGT+AGG + chr7_4:35327591-35327610 Msa1151120:CDS 35.0%
!! TCTTACTTTTCTTGTCCCTA+GGG - chr7_4:35327659-35327678 None:intergenic 35.0%
!! TTCTTACTTTTCTTGTCCCT+AGG - chr7_4:35327660-35327679 None:intergenic 35.0%
AGGGACAAGAAAAGTAAGAA+TGG + chr7_4:35327660-35327679 Msa1151120:CDS 35.0%
AAGTCATTCGACACTTACTT+CGG - chr7_4:35327790-35327809 None:intergenic 35.0%
GTACATGTTACTAAAAGCCA+CGG + chr7_4:35328091-35328110 Msa1151120:intron 35.0%
!! GGAGAAAGTTGAAAAGTACT+TGG + chr7_4:35328385-35328404 Msa1151120:CDS 35.0%
AATGTGATTTAAGGAAGGCT+TGG - chr7_4:35328624-35328643 None:intergenic 35.0%
GAGGAAATGTGATTTAAGGA+AGG - chr7_4:35328629-35328648 None:intergenic 35.0%
CATAAAGGTCTTAACCACTA+AGG + chr7_4:35328666-35328685 Msa1151120:three_prime_UTR 35.0%
!! CATGGATGGATTGTGTTCTA+AGG - chr7_4:35325623-35325642 None:intergenic 40.0%
TGATGAATGAGTTGCATGGA+TGG - chr7_4:35325637-35325656 None:intergenic 40.0%
CTAGTGATGAATGAGTTGCA+TGG - chr7_4:35325641-35325660 None:intergenic 40.0%
CATAAACGTGAGGGAGAATA+TGG - chr7_4:35325743-35325762 None:intergenic 40.0%
GTTGAAGCAAGAACAAACAG+GGG + chr7_4:35325925-35325944 Msa1151120:CDS 40.0%
TCTAACCTTACTGGTGTTCA+AGG + chr7_4:35326034-35326053 Msa1151120:CDS 40.0%
TGCTGTAAATATTCAAGGGG+AGG + chr7_4:35326057-35326076 Msa1151120:CDS 40.0%
GACCTCTTTCTCTTAGAAAC+CGG + chr7_4:35326170-35326189 Msa1151120:intron 40.0%
!! CATTTTAGGTCTCAATCCTC+CGG - chr7_4:35326192-35326211 None:intergenic 40.0%
! CCTCGACCATGAAACATTTT+AGG - chr7_4:35326206-35326225 None:intergenic 40.0%
CCTAAAATGTTTCATGGTCG+AGG + chr7_4:35326203-35326222 Msa1151120:intron 40.0%
AAAAATCCGCAATCGTGGTT+TGG - chr7_4:35326332-35326351 None:intergenic 40.0%
GCAGTAGAAGAGAGTTATTC+AGG + chr7_4:35326586-35326605 Msa1151120:CDS 40.0%
AATTCCAAAAATGGAACCGG+TGG - chr7_4:35326671-35326690 None:intergenic 40.0%
GGGGCTGTAAATTCCAAAAA+TGG - chr7_4:35326680-35326699 None:intergenic 40.0%
TCAGCAAGACACTCATCATT+GGG - chr7_4:35326700-35326719 None:intergenic 40.0%
! TCGAAGCATTCACTTACTGT+GGG - chr7_4:35326745-35326764 None:intergenic 40.0%
! TTCGAAGCATTCACTTACTG+TGG - chr7_4:35326746-35326765 None:intergenic 40.0%
AGGAATCGAACTCGGTAATT+TGG + chr7_4:35326789-35326808 Msa1151120:intron 40.0%
!! TGGAGTTGGTTTGATGATGT+AGG + chr7_4:35326809-35326828 Msa1151120:intron 40.0%
TGAACCGATTGAACCATGAT+CGG + chr7_4:35327186-35327205 Msa1151120:intron 40.0%
CTTTCCGATCATGGTTCAAT+CGG - chr7_4:35327193-35327212 None:intergenic 40.0%
TGTTAAGCAATGCTTTGGTC+TGG - chr7_4:35327244-35327263 None:intergenic 40.0%
TAAGGTTTGCCATTAGAACC+TGG - chr7_4:35327564-35327583 None:intergenic 40.0%
ATGGCAAACCTTATTCAGCA+AGG + chr7_4:35327571-35327590 Msa1151120:CDS 40.0%
GTTTGGTAGGTGATTTCCAT+AGG + chr7_4:35327604-35327623 Msa1151120:CDS 40.0%
TGGCATTTATGGATACCCTA+GGG + chr7_4:35327641-35327660 Msa1151120:CDS 40.0%
AGTTTCATTGTAGAACAGGC+TGG + chr7_4:35327717-35327736 Msa1151120:CDS 40.0%
GTAATCGTGACTTAAAACCG+TGG - chr7_4:35328111-35328130 None:intergenic 40.0%
TGTCTTTCCTACGACAGTTA+AGG - chr7_4:35328190-35328209 None:intergenic 40.0%
AACGTGTTCCACTGTACATT+GGG + chr7_4:35328348-35328367 Msa1151120:CDS 40.0%
! AAAAAGCATGTGAGTGGCTC+TGG + chr7_4:35325815-35325834 Msa1151120:CDS 45.0%
TTTGAACTAGGGTCGAACTC+TGG + chr7_4:35326139-35326158 Msa1151120:intron 45.0%
! CTCCGGTTTCTAAGAGAAAG+AGG - chr7_4:35326175-35326194 None:intergenic 45.0%
CTCTTTCTCTTAGAAACCGG+AGG + chr7_4:35326173-35326192 Msa1151120:intron 45.0%
! ATTGTTTGAGGTCAAGTGGG+AGG + chr7_4:35326524-35326543 Msa1151120:CDS 45.0%
GACAGGGATTATAGCATCAG+AGG + chr7_4:35326546-35326565 Msa1151120:CDS 45.0%
TAACTCTCTTCTACTGCCAC+TGG - chr7_4:35326583-35326602 None:intergenic 45.0%
GTGGTCTTTGATCCACTTGA+TGG + chr7_4:35326619-35326638 Msa1151120:CDS 45.0%
CAGCAAGACACTCATCATTG+GGG - chr7_4:35326699-35326718 None:intergenic 45.0%
GTCAGCAAGACACTCATCAT+TGG - chr7_4:35326701-35326720 None:intergenic 45.0%
! CGAAGCATTCACTTACTGTG+GGG - chr7_4:35326744-35326763 None:intergenic 45.0%
! CGAACTCGGTAATTTGGAGT+TGG + chr7_4:35326795-35326814 Msa1151120:intron 45.0%
TTGGTGAGACTTTCCGATCA+TGG - chr7_4:35327202-35327221 None:intergenic 45.0%
GATCGGAAAGTCTCACCAAT+TGG + chr7_4:35327203-35327222 Msa1151120:intron 45.0%
GCAATGCTTTGGTCTGGTAT+CGG - chr7_4:35327238-35327257 None:intergenic 45.0%
ATTGTGAATGTGTGCCAACC+AGG + chr7_4:35327309-35327328 Msa1151120:CDS 45.0%
ATCGATGATCTCAAGGAACC+AGG + chr7_4:35327543-35327562 Msa1151120:CDS 45.0%
! CTCAAGGAACCAGGTTCTAA+TGG + chr7_4:35327552-35327571 Msa1151120:CDS 45.0%
TTCCATAGGACACTGCTCTA+TGG + chr7_4:35327618-35327637 Msa1151120:CDS 45.0%
CTGCTCTATGGTGGCATTTA+TGG + chr7_4:35327630-35327649 Msa1151120:CDS 45.0%
GTGGCATTTATGGATACCCT+AGG + chr7_4:35327640-35327659 Msa1151120:CDS 45.0%
TTCATTGTAGAACAGGCTGG+TGG + chr7_4:35327720-35327739 Msa1151120:CDS 45.0%
CATTCGACACTTACTTCGGT+GGG - chr7_4:35327786-35327805 None:intergenic 45.0%
TCATTCGACACTTACTTCGG+TGG - chr7_4:35327787-35327806 None:intergenic 45.0%
GTCGCATTTGATTGCTACGA+CGG - chr7_4:35328152-35328171 None:intergenic 45.0%
AATGCGACCTTAACTGTCGT+AGG + chr7_4:35328180-35328199 Msa1151120:intron 45.0%
! AGATCGGCAGCCACAATTTT+TGG - chr7_4:35328235-35328254 None:intergenic 45.0%
CAACGTGTTCCACTGTACAT+TGG + chr7_4:35328347-35328366 Msa1151120:CDS 45.0%
CAGCACCTTGAACACCAGTA+AGG - chr7_4:35326042-35326061 None:intergenic 50.0%
CACAGTCCAAACCACGATTG+CGG + chr7_4:35326323-35326342 Msa1151120:intron 50.0%
AGAGGAAGAAGATGTGCCAG+TGG + chr7_4:35326564-35326583 Msa1151120:CDS 50.0%
!! GGACACTGCAGCATCGATAT+TGG - chr7_4:35326650-35326669 None:intergenic 50.0%
!!! GTGTCCACCGGTTCCATTTT+TGG + chr7_4:35326664-35326683 Msa1151120:CDS 50.0%
GATGAGTGTCTTGCTGACGT+TGG + chr7_4:35326703-35326722 Msa1151120:CDS 50.0%
CCGATAAACTTGCCTGCTCT+CGG - chr7_4:35327028-35327047 None:intergenic 50.0%
CCGAGAGCAGGCAAGTTTAT+CGG + chr7_4:35327025-35327044 Msa1151120:intron 50.0%
GAGCAGGCAAGTTTATCGGT+TGG + chr7_4:35327029-35327048 Msa1151120:intron 50.0%
AGTCTCACCAATTGGACCTC+CGG + chr7_4:35327211-35327230 Msa1151120:intron 50.0%
CTAGAAGGTTGCTTCCTGGT+TGG - chr7_4:35327326-35327345 None:intergenic 50.0%
TGCAGTAACCAGCTGCTAGA+AGG - chr7_4:35327341-35327360 None:intergenic 50.0%
CACCATAGAGCAGTGTCCTA+TGG - chr7_4:35327623-35327642 None:intergenic 50.0%
CATAGGACACTGCTCTATGG+TGG + chr7_4:35327621-35327640 Msa1151120:CDS 50.0%
GTAGAACAGGCTGGTGGAAA+AGG + chr7_4:35327726-35327745 Msa1151120:CDS 50.0%
GCTGGTGGAAAAGGTTCAGA+TGG + chr7_4:35327735-35327754 Msa1151120:CDS 50.0%
TCTGTGCTCCCAATGTACAG+TGG - chr7_4:35328359-35328378 None:intergenic 50.0%
! ACTGTACATTGGGAGCACAG+AGG + chr7_4:35328358-35328377 Msa1151120:CDS 50.0%
!! AAGCATGTGAGTGGCTCTGG+AGG + chr7_4:35325818-35325837 Msa1151120:CDS 55.0%
! CTCTGGAGGAGTGAGATGCA+TGG + chr7_4:35325832-35325851 Msa1151120:CDS 55.0%
GGAGTGAGATGCATGGCTGT+TGG + chr7_4:35325839-35325858 Msa1151120:CDS 55.0%
! GGCTGTTGGTGAAGTAGCTG+CGG + chr7_4:35325853-35325872 Msa1151120:CDS 55.0%
TTGAGGTCAAGTGGGAGGAC+AGG + chr7_4:35326529-35326548 Msa1151120:CDS 55.0%
TGAGGTCAAGTGGGAGGACA+GGG + chr7_4:35326530-35326549 Msa1151120:CDS 55.0%
ATCGATGCTGCAGTGTCCAC+CGG + chr7_4:35326652-35326671 Msa1151120:CDS 55.0%
TATCGGACCGGAGGTCCAAT+TGG - chr7_4:35327221-35327240 None:intergenic 55.0%
! GCTTTGGTCTGGTATCGGAC+CGG - chr7_4:35327233-35327252 None:intergenic 55.0%
GCTGCTAGAAGGTTGCTTCC+TGG - chr7_4:35327330-35327349 None:intergenic 55.0%
GGAAGCAACCTTCTAGCAGC+TGG + chr7_4:35327330-35327349 Msa1151120:CDS 55.0%
! CATTGGGAGCACAGAGGAAG+TGG + chr7_4:35328364-35328383 Msa1151120:CDS 55.0%
CAACTAGTTGGGCCGAGAGC+AGG + chr7_4:35327013-35327032 Msa1151120:intron 60.0%
! TTGGTCTGGTATCGGACCGG+AGG - chr7_4:35327230-35327249 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 35325504 35328700 35325504 ID=Msa1151120;Name=Msa1151120
chr7_4 mRNA 35325504 35328700 35325504 ID=Msa1151120-mRNA-1;Parent=Msa1151120;Name=Msa1151120-mRNA-1;_AED=0.07;_eAED=0.07;_QI=185|1|1|1|1|1|4|288|411
chr7_4 exon 35325504 35326111 35325504 ID=Msa1151120-mRNA-1:exon:8308;Parent=Msa1151120-mRNA-1
chr7_4 exon 35326514 35326747 35326514 ID=Msa1151120-mRNA-1:exon:8309;Parent=Msa1151120-mRNA-1
chr7_4 exon 35327285 35327791 35327285 ID=Msa1151120-mRNA-1:exon:8310;Parent=Msa1151120-mRNA-1
chr7_4 exon 35328341 35328700 35328341 ID=Msa1151120-mRNA-1:exon:8311;Parent=Msa1151120-mRNA-1
chr7_4 five_prime_UTR 35325504 35325688 35325504 ID=Msa1151120-mRNA-1:five_prime_utr;Parent=Msa1151120-mRNA-1
chr7_4 CDS 35325689 35326111 35325689 ID=Msa1151120-mRNA-1:cds;Parent=Msa1151120-mRNA-1
chr7_4 CDS 35326514 35326747 35326514 ID=Msa1151120-mRNA-1:cds;Parent=Msa1151120-mRNA-1
chr7_4 CDS 35327285 35327791 35327285 ID=Msa1151120-mRNA-1:cds;Parent=Msa1151120-mRNA-1
chr7_4 CDS 35328341 35328412 35328341 ID=Msa1151120-mRNA-1:cds;Parent=Msa1151120-mRNA-1
chr7_4 three_prime_UTR 35328413 35328700 35328413 ID=Msa1151120-mRNA-1:three_prime_utr;Parent=Msa1151120-mRNA-1
Gene Sequence

>Msa1151120

ATGGTTGCAATGGCAGCAGCAACAGCATCATCACAGTTAATATTCTCAAAACCATATTCTCCCTCACGTTTATGTCCTTTTCAACTTTGTGTCTTCGACACGAAATCAGTGTTATCAAGTTCAAGAAAAAAGCATGTGAGTGGCTCTGGAGGAGTGAGATGCATGGCTGTTGGTGAAGTAGCTGCGGAGACGAAGAAAAGAAGTAGTTATGAGCTTATAACATTGACAAGTTGGTTGTTGAAGCAAGAACAAACAGGGGTTATTGATGCTGAACTTACTATTGTTTTGAATAGTATTTCGTTGGCATGTAAACAGATTGCTTCTTTGGTTCAAAGAGCTAATATTTCTAACCTTACTGGTGTTCAAGGTGCTGTAAATATTCAAGGGGAGGATCAGAAAAAACTTGATGTTGTCTCAAATGAGGTATTCTCAAATTGTTTGAGGTCAAGTGGGAGGACAGGGATTATAGCATCAGAGGAAGAAGATGTGCCAGTGGCAGTAGAAGAGAGTTATTCAGGAAACTACATTGTGGTCTTTGATCCACTTGATGGTTCATCCAATATCGATGCTGCAGTGTCCACCGGTTCCATTTTTGGAATTTACAGCCCCAATGATGAGTGTCTTGCTGACGTTGGTGATGAGTCTGATGACCCCACACTTGGCACAGAAGAACAAAGATGCATTGTGAATGTGTGCCAACCAGGAAGCAACCTTCTAGCAGCTGGTTACTGCATGTATTCTAGCTCAGTAATCTTTGTTCTAACAATCGGCAAAGGAGTGTTTGTATTCACATTAGATCCAATGTATGGGGAATTTGTTTTGACTCAAGAAAATCTCCAAATACCGAAATCAGGGAAAATATATTCTTTCAATGAAGGGAATTACAAGTTATGGGATGATAACTTGAAGAAATACATCGATGATCTCAAGGAACCAGGTTCTAATGGCAAACCTTATTCAGCAAGGTATATTGGTAGTTTGGTAGGTGATTTCCATAGGACACTGCTCTATGGTGGCATTTATGGATACCCTAGGGACAAGAAAAGTAAGAATGGAAAGCTTAGGCTTTTATATGAGTGTGCTCCAATGAGTTTCATTGTAGAACAGGCTGGTGGAAAAGGTTCAGATGGTCATCAAAGAGTACTTGACATTCAACCCACCGAAATTCATCAACGTGTTCCACTGTACATTGGGAGCACAGAGGAAGTGGAGAAAGTTGAAAAGTACTTGGCTTAA

Protein sequence

>Msa1151120

MVAMAAATASSQLIFSKPYSPSRLCPFQLCVFDTKSVLSSSRKKHVSGSGGVRCMAVGEVAAETKKRSSYELITLTSWLLKQEQTGVIDAELTIVLNSISLACKQIASLVQRANISNLTGVQGAVNIQGEDQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPNDECLADVGDESDDPTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSVIFVLTIGKGVFVFTLDPMYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDDNLKKYIDDLKEPGSNGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKVEKYLA*