AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1098100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1098100 MtrunA17_Chr7g0220011 85.294 204 7 1 1 181 1 204 3.76e-124 354
Msa1098100 MtrunA17_Chr7g0220011 91.892 37 3 0 183 219 268 304 3.48e-15 73.2
Msa1098100 MtrunA17_Chr6g0455481 46.535 303 76 5 1 217 4 306 1.50e-85 256
Msa1098100 MtrunA17_Chr7g0220001 58.824 204 61 1 1 181 3 206 6.68e-83 249
Msa1098100 MtrunA17_Chr7g0219991 53.595 153 46 2 1 128 1 153 1.54e-49 165
Msa1098100 MtrunA17_Chr7g0219991 63.158 57 21 0 125 181 245 301 1.06e-17 80.5
Msa1098100 MtrunA17_Chr1g0184161 37.054 224 114 3 1 198 1 223 1.21e-45 154
Msa1098100 MtrunA17_Chr1g0184151 35.577 208 107 3 1 182 1 207 1.45e-42 146
Msa1098100 MtrunA17_Chr1g0184101 35.437 206 101 5 5 181 4 206 2.22e-36 130
Msa1098100 MtrunA17_Chr1g0184111 30.000 290 115 5 15 216 13 302 3.34e-36 130
Msa1098100 MtrunA17_Chr1g0184121 30.000 290 115 5 15 216 13 302 3.21e-35 127
Msa1098100 MtrunA17_Chr3g0128001 35.294 204 108 4 1 181 1 203 4.55e-35 127
Msa1098100 MtrunA17_Chr8g0345831 33.824 204 104 6 5 181 11 210 1.21e-25 102
Msa1098100 MtrunA17_Chr7g0250511 31.658 199 102 6 14 181 23 218 1.80e-24 99.0
Msa1098100 MtrunA17_Chr1g0179801 30.374 214 109 7 5 181 30 240 8.77e-23 94.7
Msa1098100 MtrunA17_Chr1g0187821 33.333 168 87 5 39 181 67 234 1.10e-22 94.4
Msa1098100 MtrunA17_Chr4g0055591 29.348 184 102 4 39 198 61 240 1.65e-21 90.9
Msa1098100 MtrunA17_Chr7g0225881 31.472 197 106 7 14 182 37 232 2.05e-21 90.9
Msa1098100 MtrunA17_Chr1g0187811 31.548 168 90 4 39 181 188 355 3.97e-21 90.9
Msa1098100 MtrunA17_Chr7g0235951 31.844 179 96 6 29 181 56 234 5.62e-20 87.0
Msa1098100 MtrunA17_Chr8g0335411 29.825 171 89 5 39 181 67 234 1.18e-19 85.9
Msa1098100 MtrunA17_Chr1g0187831 30.357 168 92 5 39 181 70 237 1.66e-19 85.9
Msa1098100 MtrunA17_Chr3g0113641 27.363 201 112 6 14 181 24 223 2.55e-19 85.1
Msa1098100 MtrunA17_Chr1g0184241 30.144 209 122 6 14 198 43 251 3.47e-19 84.7
Msa1098100 MtrunA17_Chr2g0311701 32.804 189 96 7 39 202 69 251 3.58e-19 84.7
Msa1098100 MtrunA17_Chr7g0242551 30.918 207 102 8 14 181 24 228 3.64e-19 84.7
Msa1098100 MtrunA17_Chr4g0006371 28.372 215 106 7 14 181 23 236 5.15e-19 84.3
Msa1098100 MtrunA17_Chr5g0424201 28.283 198 110 5 14 181 18 213 9.59e-19 83.2
Msa1098100 MtrunA17_Chr3g0125201 29.341 167 94 5 39 181 3 169 9.81e-19 82.8
Msa1098100 MtrunA17_Chr8g0354241 31.606 193 93 7 39 198 68 254 1.03e-18 83.6
Msa1098100 MtrunA17_Chr8g0354261 32.124 193 92 8 39 198 68 254 1.07e-18 83.2
Msa1098100 MtrunA17_Chr2g0311711 33.333 168 87 6 39 181 67 234 1.08e-18 83.2
Msa1098100 MtrunA17_Chr5g0424211 26.131 199 117 4 13 181 15 213 1.31e-18 82.8
Msa1098100 MtrunA17_Chr5g0412671 27.358 212 122 4 19 198 18 229 1.62e-18 82.4
Msa1098100 MtrunA17_Chr3g0114871 27.411 197 115 4 13 181 15 211 3.02e-18 80.9
Msa1098100 MtrunA17_Chr8g0336761 32.164 171 90 6 38 182 59 229 5.38e-18 81.3
Msa1098100 MtrunA17_Chr8g0348081 32.386 176 81 6 38 181 59 228 6.43e-18 80.9
Msa1098100 MtrunA17_Chr6g0472861 28.358 201 112 7 14 182 37 237 6.56e-18 81.3
Msa1098100 MtrunA17_Chr7g0265221 27.442 215 111 6 11 181 34 247 7.02e-18 81.3
Msa1098100 MtrunA17_Chr4g0066991 31.746 189 99 9 29 202 56 229 7.10e-18 80.9
Msa1098100 MtrunA17_Chr1g0162351 29.665 209 99 7 19 181 50 256 8.65e-18 80.9
Msa1098100 MtrunA17_Chr2g0311741 32.544 169 87 7 39 181 27 194 1.38e-17 79.7
Msa1098100 MtrunA17_Chr7g0247991 29.577 213 118 7 14 200 42 248 1.50e-17 80.1
Msa1098100 MtrunA17_Chr4g0011311 30.811 185 95 8 29 181 51 234 1.76e-17 79.3
Msa1098100 MtrunA17_Chr5g0437181 25.628 199 116 6 15 181 24 222 1.77e-17 79.7
Msa1098100 MtrunA17_Chr8g0336851 30.994 171 92 6 38 182 59 229 2.65e-17 79.3
Msa1098100 MtrunA17_Chr4g0045451 29.469 207 100 8 19 181 7 211 2.66e-17 79.3
Msa1098100 MtrunA17_Chr7g0239101 31.953 169 88 5 39 181 55 222 2.68e-17 79.3
Msa1098100 MtrunA17_Chr3g0102041 25.381 197 119 4 13 181 13 209 2.80e-17 79.3
Msa1098100 MtrunA17_Chr8g0371921 25.381 197 119 4 13 181 13 209 5.58e-17 78.6
Msa1098100 MtrunA17_Chr4g0050031 30.994 171 90 6 39 181 62 232 6.07e-17 78.2
Msa1098100 MtrunA17_Chr1g0184141 32.000 125 62 1 78 179 4 128 8.05e-17 73.9
Msa1098100 MtrunA17_Chr8g0364471 29.762 168 93 5 39 181 67 234 9.71e-17 77.8
Msa1098100 MtrunA17_Chr2g0311761 27.803 223 126 7 16 210 44 259 1.46e-16 77.4
Msa1098100 MtrunA17_Chr2g0311681 32.258 186 101 6 39 199 63 248 1.52e-16 77.0
Msa1098100 MtrunA17_Chr5g0412651 28.718 195 107 4 19 181 18 212 1.55e-16 77.0
Msa1098100 MtrunA17_Chr8g0336861 30.939 181 86 7 35 182 56 230 1.63e-16 77.0
Msa1098100 MtrunA17_Chr5g0412681 30.769 182 96 6 27 181 21 199 1.69e-16 77.0
Msa1098100 MtrunA17_Chr8g0375601 29.851 201 106 9 14 181 20 218 1.78e-16 77.0
Msa1098100 MtrunA17_Chr8g0371931 24.752 202 124 4 8 181 8 209 1.81e-16 77.0
Msa1098100 MtrunA17_Chr3g0109041 29.146 199 108 6 14 181 19 215 2.00e-16 76.6
Msa1098100 MtrunA17_Chr8g0336751 31.053 190 98 7 38 198 93 278 2.63e-16 76.6
Msa1098100 MtrunA17_Chr8g0362741 34.783 138 69 6 64 181 83 219 2.74e-16 75.5
Msa1098100 MtrunA17_Chr7g0239121 29.032 186 105 5 39 198 51 235 3.88e-16 75.9
Msa1098100 MtrunA17_Chr5g0405411 23.858 197 122 4 13 181 13 209 5.98e-16 75.5
Msa1098100 MtrunA17_Chr8g0336781 32.184 174 83 7 39 181 95 264 8.38e-16 75.1
Msa1098100 MtrunA17_Chr1g0167911 28.125 192 114 6 14 181 29 220 9.22e-16 74.7
Msa1098100 MtrunA17_Chr2g0311831 30.000 210 119 9 16 198 44 252 1.10e-15 74.7
Msa1098100 MtrunA17_Chr2g0285931 33.333 168 82 6 39 180 28 191 1.18e-15 74.3
Msa1098100 MtrunA17_Chr7g0236011 29.534 193 97 7 39 202 67 249 1.65e-15 74.3
Msa1098100 MtrunA17_Chr5g0398291 24.155 207 118 5 14 181 17 223 1.81e-15 73.9
Msa1098100 MtrunA17_Chr7g0232161 30.052 193 107 7 16 181 36 227 1.87e-15 73.9
Msa1098100 MtrunA17_Chr3g0126741 30.994 171 90 6 39 181 59 229 2.17e-15 73.9
Msa1098100 MtrunA17_Chr2g0311691 30.732 205 116 7 20 198 43 247 3.27e-15 73.6
Msa1098100 MtrunA17_Chr4g0045411 26.866 201 106 7 20 181 12 210 3.46e-15 73.2
Msa1098100 MtrunA17_Chr8g0375671 26.633 199 113 6 14 181 27 223 4.45e-15 73.2
Msa1098100 MtrunA17_Chr2g0311921 29.949 197 109 7 29 198 44 238 5.54e-15 72.8
Msa1098100 MtrunA17_Chr8g0336631 29.787 188 105 7 38 198 59 246 5.67e-15 72.8
Msa1098100 MtrunA17_Chr4g0045441 28.641 206 103 7 19 181 7 211 5.83e-15 72.4
Msa1098100 MtrunA17_Chr1g0167931 29.557 203 93 7 14 198 29 199 6.62e-15 72.0
Msa1098100 MtrunA17_Chr8g0336831 29.319 191 98 5 38 196 59 244 1.60e-14 70.5
Msa1098100 MtrunA17_Chr7g0239111 28.283 198 111 7 39 210 55 247 1.96e-14 71.2
Msa1098100 MtrunA17_Chr1g0167951 28.230 209 125 7 14 198 29 236 2.25e-14 70.9
Msa1098100 MtrunA17_Chr1g0162361 26.904 197 110 4 19 181 7 203 3.57e-14 70.5
Msa1098100 MtrunA17_Chr3g0114861 27.461 193 112 3 16 181 17 208 5.10e-14 69.7
Msa1098100 MtrunA17_Chr3g0087031 28.877 187 104 6 39 198 60 244 6.65e-14 69.7
Msa1098100 MtrunA17_Chr5g0423191 24.615 195 114 5 16 181 24 214 8.59e-14 69.3
Msa1098100 MtrunA17_Chr8g0365241 25.103 243 136 9 14 217 32 267 1.09e-13 68.9
Msa1098100 MtrunA17_Chr5g0423251 22.680 194 125 4 13 181 21 214 4.25e-13 67.4
Msa1098100 MtrunA17_Chr3g0145171 29.143 175 88 8 39 181 52 222 4.81e-13 67.0
Msa1098100 MtrunA17_Chr8g0375701 25.397 189 111 5 37 198 53 238 4.92e-13 67.0
Msa1098100 MtrunA17_Chr3g0121141 26.994 163 100 4 38 181 6 168 7.05e-13 66.2
Msa1098100 MtrunA17_Chr8g0375571 26.131 199 114 6 14 181 20 216 8.19e-13 66.6
Msa1098100 MtrunA17_Chr7g0266651 27.979 193 112 10 15 181 34 225 1.43e-12 65.9
Msa1098100 MtrunA17_Chr5g0426891 26.768 198 112 6 14 181 14 208 1.87e-12 65.5
Msa1098100 MtrunA17_Chr5g0420941 24.201 219 138 6 14 207 20 235 2.32e-12 65.1
Msa1098100 MtrunA17_Chr2g0289341 29.518 166 93 6 39 181 4 168 3.02e-12 64.7
Msa1098100 MtrunA17_Chr7g0239821 23.404 188 115 6 39 199 64 249 3.81e-12 64.7
Msa1098100 MtrunA17_Chr4g0045431 26.442 208 107 7 18 181 6 211 6.08e-12 63.9
Msa1098100 MtrunA17_Chr3g0092531 28.767 146 80 2 38 159 5 150 7.48e-12 63.5
Msa1098100 MtrunA17_Chr7g0235991 29.600 125 69 2 51 156 38 162 8.07e-12 62.0
Msa1098100 MtrunA17_Chr5g0420981 26.147 218 115 10 39 217 53 263 1.21e-11 63.2
Msa1098100 MtrunA17_Chr2g0313111 29.268 164 90 6 39 180 28 187 3.13e-11 61.6
Msa1098100 MtrunA17_Chr1g0161111 26.425 193 114 7 15 181 106 296 4.35e-11 61.6
Msa1098100 MtrunA17_Chr5g0420951 24.103 195 121 5 14 181 27 221 5.93e-11 61.2
Msa1098100 MtrunA17_Chr1g0194321 30.723 166 87 6 39 178 20 183 6.16e-11 60.8
Msa1098100 MtrunA17_Chr8g0370721 23.786 206 114 9 39 211 52 247 7.42e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1098100 AT5G24530.1 35.294 204 108 4 1 181 1 203 3.95e-36 130
Msa1098100 AT4G10500.1 33.654 208 110 5 1 181 6 212 1.41e-29 113
Msa1098100 AT4G10490.1 32.195 205 112 4 4 181 6 210 1.47e-25 102
Msa1098100 AT5G07480.1 31.282 195 102 6 16 181 24 215 7.16e-24 97.8
Msa1098100 AT5G63590.1 34.286 175 88 3 34 181 9 183 1.62e-21 90.5
Msa1098100 AT2G38240.1 32.323 198 103 7 15 182 22 218 4.76e-21 90.1
Msa1098100 AT5G63580.2 29.480 173 97 2 34 181 14 186 5.45e-21 88.2
Msa1098100 AT5G63580.1 29.480 173 97 2 34 181 14 186 6.01e-21 88.2
Msa1098100 AT5G08640.2 30.392 204 114 5 6 181 9 212 7.08e-21 89.4
Msa1098100 AT5G08640.1 30.392 204 114 5 6 181 9 212 7.08e-21 89.4
Msa1098100 AT1G06650.1 32.127 221 106 9 10 198 41 249 7.24e-21 89.0
Msa1098100 AT1G06650.2 33.824 204 91 9 10 181 41 232 8.61e-21 89.4
Msa1098100 AT1G06640.3 30.137 219 113 8 10 198 41 249 1.24e-20 87.8
Msa1098100 AT1G06640.2 30.137 219 113 8 10 198 41 249 1.63e-20 88.2
Msa1098100 AT1G06640.1 30.137 219 113 8 10 198 41 249 4.09e-20 87.8
Msa1098100 AT1G06645.1 35.000 200 91 12 10 181 54 242 4.43e-20 87.8
Msa1098100 AT2G44800.1 29.557 203 100 7 16 182 27 222 6.72e-20 87.0
Msa1098100 AT3G19000.2 27.536 207 106 6 19 181 7 213 2.90e-19 84.0
Msa1098100 AT3G60290.1 31.282 195 105 8 16 181 27 221 3.74e-19 84.7
Msa1098100 AT3G19000.1 27.536 207 106 6 19 181 7 213 5.68e-19 84.3
Msa1098100 AT5G63600.2 30.939 181 102 4 23 180 15 195 6.07e-19 84.0
Msa1098100 AT5G63600.1 30.939 181 102 4 23 180 15 195 6.13e-19 84.0
Msa1098100 AT2G30830.1 32.292 192 92 7 39 198 54 239 1.66e-18 83.2
Msa1098100 AT1G06620.2 28.972 214 116 9 16 198 38 246 8.77e-18 80.1
Msa1098100 AT3G11180.2 29.064 203 106 8 14 181 65 264 1.37e-17 80.9
Msa1098100 AT3G11180.1 29.064 203 106 8 14 181 65 264 2.09e-17 80.1
Msa1098100 AT1G06620.1 28.972 214 116 9 16 198 38 246 2.10e-17 80.1
Msa1098100 AT3G51240.1 24.365 197 121 4 13 181 12 208 1.29e-16 77.8
Msa1098100 AT1G03410.2 30.612 196 105 7 16 181 31 225 1.73e-16 77.4
Msa1098100 AT1G03410.1 30.612 196 105 7 16 181 68 262 2.67e-16 77.0
Msa1098100 AT2G30840.1 32.000 175 84 8 38 181 56 226 2.92e-16 76.6
Msa1098100 AT2G30840.2 31.429 175 85 7 38 181 56 226 3.21e-16 76.3
Msa1098100 AT2G30840.3 32.000 175 84 8 38 181 56 226 3.30e-16 76.6
Msa1098100 AT5G51810.2 28.155 206 113 7 8 181 34 236 3.85e-16 75.9
Msa1098100 AT5G05600.2 30.500 200 107 7 14 181 36 235 4.08e-16 75.5
Msa1098100 AT5G51810.1 28.155 206 113 7 8 181 34 236 5.22e-16 76.3
Msa1098100 AT3G55970.2 29.557 203 107 8 15 181 24 226 5.51e-16 75.5
Msa1098100 AT5G05600.1 30.500 200 107 7 14 181 36 235 7.52e-16 75.5
Msa1098100 AT5G63595.1 31.138 167 80 4 35 181 21 172 7.59e-16 74.7
Msa1098100 AT3G55970.1 29.557 203 107 8 15 181 24 226 7.73e-16 75.5
Msa1098100 AT2G25450.1 28.708 209 106 10 30 208 49 244 2.37e-15 74.3
Msa1098100 AT2G36690.2 27.586 203 110 7 14 181 30 230 5.49e-15 73.2
Msa1098100 AT2G36690.1 27.586 203 110 7 14 181 30 230 5.49e-15 73.2
Msa1098100 AT1G03400.1 25.654 191 114 5 39 209 56 238 1.93e-14 71.6
Msa1098100 AT1G03400.2 25.654 191 114 5 39 209 56 238 2.96e-14 71.2
Msa1098100 AT5G43440.2 28.856 201 104 9 10 181 39 229 6.39e-14 69.7
Msa1098100 AT1G80330.1 29.480 173 89 6 39 181 49 218 8.33e-14 69.7
Msa1098100 AT5G43440.1 28.856 201 104 9 10 181 39 229 1.05e-13 69.3
Msa1098100 AT5G43450.2 25.243 206 110 8 6 181 35 226 1.38e-13 68.6
Msa1098100 AT5G43450.1 25.243 206 110 8 6 181 35 226 1.94e-13 68.6
Msa1098100 AT1G04350.1 30.952 168 89 8 39 181 58 223 7.05e-13 67.0
Msa1098100 AT3G61400.2 30.460 174 90 6 39 181 60 233 1.67e-12 65.5
Msa1098100 AT3G61400.1 30.460 174 90 6 39 181 60 233 1.77e-12 65.9
Msa1098100 AT1G15550.1 25.258 194 113 4 35 200 53 242 2.39e-12 65.5
Msa1098100 AT1G30040.2 30.108 186 99 6 33 192 25 205 2.67e-12 64.7
Msa1098100 AT1G30040.1 29.570 186 100 6 33 192 25 205 3.62e-12 65.1
Msa1098100 AT4G16330.2 28.070 171 93 4 39 181 67 235 4.00e-12 65.1
Msa1098100 AT1G04380.2 27.835 194 111 10 39 209 45 232 4.56e-12 63.9
Msa1098100 AT1G04380.1 27.835 194 111 10 39 209 45 232 8.38e-12 63.9
Msa1098100 AT5G59530.1 25.352 213 131 8 14 198 33 245 9.51e-12 63.9
Msa1098100 AT1G05010.1 28.221 163 98 4 38 181 6 168 1.01e-11 63.5
Msa1098100 AT3G12900.1 27.830 212 123 7 14 198 31 239 1.13e-11 63.5
Msa1098100 AT3G21420.1 26.512 215 120 6 39 216 55 268 1.19e-11 63.5
Msa1098100 AT1G55290.1 28.169 213 119 7 15 198 36 243 1.84e-11 62.8
Msa1098100 AT1G62380.1 26.946 167 98 6 39 182 7 172 2.96e-11 62.0
Msa1098100 AT1G12010.1 27.108 166 97 4 39 181 7 171 5.01e-11 61.6
Msa1098100 AT5G59540.2 26.396 197 114 8 31 198 53 247 5.25e-11 61.2
Msa1098100 AT5G59540.1 26.396 197 114 8 31 198 53 247 8.64e-11 60.8

Find 58 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGAAAGTCCATTATTGTT+AGG 0.266675 7_3:-24533729 Msa1098100:CDS
AAGTCCACCAGAACAATATT+TGG 0.273525 7_3:+24533752 None:intergenic
GTTTGTTGGACGGATGAAAT+AGG 0.315551 7_3:+24532339 None:intergenic
GCAAAGCCTTTGACATGTTC+TGG 0.317739 7_3:-24532298 None:intergenic
GCCGTGCCGGGTCTACTTTC+CGG 0.323728 7_3:+24538451 None:intergenic
CACCGTGTTGTGACAAATTC+AGG 0.325505 7_3:-24532382 Msa1098100:CDS
CAGGTGAATTCATGGAGTTT+TGG 0.325921 7_3:-24537601 Msa1098100:CDS
TTGAGAGCTTCTGAGGAGTA+TGG 0.335017 7_3:-24538352 Msa1098100:CDS
TCCACCTTCAGGTGAATTCA+TGG 0.337468 7_3:-24537609 Msa1098100:intron
GGCACGGCGTCTGTGATTTC+CGG 0.339540 7_3:-24538436 Msa1098100:CDS
TAGAGTCTGCAACTTCCATT+AGG 0.351993 7_3:+24537698 None:intergenic
AGTCCACCAGAACAATATTT+GGG 0.355434 7_3:+24533753 None:intergenic
CACCACCGGGATTATCTTGC+CGG 0.356208 7_3:+24538417 None:intergenic
GAACATGTCAAAGGCTTTGC+TGG 0.371604 7_3:+24532301 None:intergenic
TAGTGATGCCCTAACAATAA+TGG 0.378255 7_3:+24533720 None:intergenic
TGGAGTTTCCAAGGAGTTGA+TGG 0.384054 7_3:-24537795 Msa1098100:CDS
TCGATTTACCGGTATCTTGT+AGG 0.387301 7_3:+24537569 None:intergenic
CTTGACCCCAAATATTGTTC+TGG 0.395212 7_3:-24533759 Msa1098100:CDS
GTGAAAGTCCATTATTGTTA+GGG 0.405011 7_3:-24533728 Msa1098100:CDS
AGCACTGGGACTTAAAATAT+TGG 0.414166 7_3:-24533805 Msa1098100:CDS
GGTGGTTGCACATACGATAA+AGG 0.428892 7_3:+24538472 None:intergenic
ATAATCCCGGTGGTGGATCT+TGG 0.440681 7_3:-24538409 Msa1098100:CDS
TCTATGATATTATCGTTTGT+TGG 0.451379 7_3:+24532325 None:intergenic
GAAATCACAGACGCCGTGCC+GGG 0.455321 7_3:+24538439 None:intergenic
AAAAGATAAGTGAAAGTTCA+AGG 0.463084 7_3:-24537724 Msa1098100:CDS
GAAAGTTCAAGGGACCCTAA+TGG 0.475802 7_3:-24537713 Msa1098100:CDS
CCCAAGGTTAAACTTGGCTC+TGG 0.484912 7_3:+24533687 None:intergenic
TGTATCATCCATCAACTCCT+TGG 0.485838 7_3:+24537787 None:intergenic
GAGTTGATATGTGAAGGGTT+AGG 0.488365 7_3:-24533783 Msa1098100:CDS
ATAACATGCTTGTCTCTAGC+TGG 0.495915 7_3:-24538516 Msa1098100:CDS
AGAGTCTGCAACTTCCATTA+GGG 0.498574 7_3:+24537699 None:intergenic
GGAAATCACAGACGCCGTGC+CGG 0.506940 7_3:+24538438 None:intergenic
TGATATTATCGTTTGTTGGA+CGG 0.511590 7_3:+24532329 None:intergenic
TACACAAGAAATGAGAGCAC+TGG 0.513408 7_3:-24533820 Msa1098100:CDS
CAACCACCGGAAAGTAGACC+CGG 0.523348 7_3:-24538457 Msa1098100:CDS
ATCCCGGTGGTGGATCTTGG+TGG 0.536047 7_3:-24538406 Msa1098100:CDS
TGTTAACCATGGAGTTTCCA+AGG 0.540398 7_3:-24537804 Msa1098100:CDS
TATTGGAGTTGATATGTGAA+GGG 0.547894 7_3:-24533788 Msa1098100:CDS
CGGCAAGATAATCCCGGTGG+TGG 0.552157 7_3:-24538416 Msa1098100:CDS
ATATTGGAGTTGATATGTGA+AGG 0.560594 7_3:-24533789 Msa1098100:CDS
CACAAAAGCCTACAAGATAC+CGG 0.561375 7_3:-24537577 Msa1098100:intron
GACCCCAAATATTGTTCTGG+TGG 0.563730 7_3:-24533756 Msa1098100:CDS
ATTTATAAGGTTGTTAACCA+TGG 0.564655 7_3:-24537815 Msa1098100:intron
AAAGATAAGTGAAAGTTCAA+GGG 0.568605 7_3:-24537723 Msa1098100:CDS
GTTAAACTTGGCTCTGGACA+AGG 0.569423 7_3:+24533693 None:intergenic
GACCACCAAGATCCACCACC+GGG 0.598905 7_3:+24538404 None:intergenic
GATTTCCGGCAAGATAATCC+CGG 0.610043 7_3:-24538422 Msa1098100:CDS
ACACAAGAAATGAGAGCACT+GGG 0.611010 7_3:-24533819 Msa1098100:CDS
TCAACTCCTTGGAAACTCCA+TGG 0.618739 7_3:+24537798 None:intergenic
TGACCACCAAGATCCACCAC+CGG 0.619625 7_3:+24538403 None:intergenic
TTTATCGTATGTGCAACCAC+CGG 0.630904 7_3:-24538470 Msa1098100:CDS
GGATCACCAGAACATGTCAA+AGG 0.631695 7_3:+24532292 None:intergenic
GTGCCGGGTCTACTTTCCGG+TGG 0.645714 7_3:+24538454 None:intergenic
AAACTTGGCTCTGGACAAGG+TGG 0.678875 7_3:+24533696 None:intergenic
TGCCTGAATTTGTCACAACA+CGG 0.682552 7_3:+24532380 None:intergenic
GTCCACCAGAACAATATTTG+GGG 0.687507 7_3:+24533754 None:intergenic
ACGGATGAAATAGGCAACAG+TGG 0.707473 7_3:+24532348 None:intergenic
TTCCGGCAAGATAATCCCGG+TGG 0.727151 7_3:-24538419 Msa1098100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTAAAAATTTTTA+CGG + chr7_3:24534974-24534993 None:intergenic 0.0%
!!! AAAATATTAATTATAATTTT+TGG - chr7_3:24537371-24537390 Msa1098100:intron 0.0%
!!! TTTATTTTTTTAGACAAAAA+AGG + chr7_3:24536128-24536147 None:intergenic 10.0%
!!! GTTTTTATTTTTATAGAAAA+AGG + chr7_3:24536157-24536176 None:intergenic 10.0%
!!! ACATGTTAATTTTTTTTTTA+CGG - chr7_3:24536766-24536785 Msa1098100:intron 10.0%
!!! TTTTGTTTATATTTTATGAA+GGG + chr7_3:24537316-24537335 None:intergenic 10.0%
!!! ATTTTGTTTATATTTTATGA+AGG + chr7_3:24537317-24537336 None:intergenic 10.0%
!!! TTTTTGTTTATATTCAAAAT+AGG + chr7_3:24537355-24537374 None:intergenic 10.0%
!! AATAAACAAATATTAACTTA+GGG + chr7_3:24537457-24537476 None:intergenic 10.0%
!! AAATAAACAAATATTAACTT+AGG + chr7_3:24537458-24537477 None:intergenic 10.0%
!!! CTTATAAGAATTTTATTTTT+AGG + chr7_3:24537604-24537623 None:intergenic 10.0%
!!! TAAATACAGTTAAAAAATTT+TGG + chr7_3:24538275-24538294 None:intergenic 10.0%
!! TTAATTAAGAAGAAAATTCT+AGG - chr7_3:24532766-24532785 Msa1098100:intron 15.0%
!! TAATTAAGAAGAAAATTCTA+GGG - chr7_3:24532767-24532786 Msa1098100:intron 15.0%
!!! TTCAATGATTTATTTTCATT+AGG - chr7_3:24532880-24532899 Msa1098100:intron 15.0%
!! AAATAAGCAAAAAAAAAAGA+AGG + chr7_3:24533298-24533317 None:intergenic 15.0%
!! TATTATTTGAATAAAGAAGT+GGG + chr7_3:24533332-24533351 None:intergenic 15.0%
!! TTATTATTTGAATAAAGAAG+TGG + chr7_3:24533333-24533352 None:intergenic 15.0%
!!! TACTTATTTTATCCTTATTA+TGG - chr7_3:24533389-24533408 Msa1098100:intron 15.0%
!!! TTAATGGTTTAGTTATTTTT+AGG - chr7_3:24533425-24533444 Msa1098100:intron 15.0%
!!! TTATTTTTAGGAAACTTATT+TGG - chr7_3:24533437-24533456 Msa1098100:intron 15.0%
!! TTAAAAATTTAGATTGCATA+TGG + chr7_3:24533646-24533665 None:intergenic 15.0%
!! TGTTTACATAAATAAGAAAT+CGG - chr7_3:24533804-24533823 Msa1098100:CDS 15.0%
!! AATTCTTAAAAATGGTTAAA+AGG - chr7_3:24534395-24534414 Msa1098100:intron 15.0%
!! AAGTATAAAATAATTAATGC+AGG - chr7_3:24534536-24534555 Msa1098100:intron 15.0%
!! ATTAAATTGAGTATACAATT+TGG + chr7_3:24534617-24534636 None:intergenic 15.0%
!!! TTTTAAAAATTTTTACGGTT+CGG + chr7_3:24534969-24534988 None:intergenic 15.0%
!! TTTCCTTCTTAAAAAAAAAA+GGG - chr7_3:24535049-24535068 Msa1098100:intron 15.0%
!! AACTTTATGATCATATAATA+TGG + chr7_3:24535151-24535170 None:intergenic 15.0%
!! TATTAATTAGTGAATACAAT+CGG + chr7_3:24535189-24535208 None:intergenic 15.0%
!! TGATATACATTAAAATAAAG+AGG - chr7_3:24536349-24536368 Msa1098100:intron 15.0%
!! GATATACATTAAAATAAAGA+GGG - chr7_3:24536350-24536369 Msa1098100:intron 15.0%
!!! ATATAATGGAAGAATTAAAA+GGG + chr7_3:24536405-24536424 None:intergenic 15.0%
!!! AATATAATGGAAGAATTAAA+AGG + chr7_3:24536406-24536425 None:intergenic 15.0%
!! AATAGTTCAACTATAAAATA+TGG + chr7_3:24536913-24536932 None:intergenic 15.0%
!! AAATCTGATAAATAAAGTAA+TGG + chr7_3:24537537-24537556 None:intergenic 15.0%
!! TCTAATTAAAACCATATAGA+GGG + chr7_3:24532545-24532564 None:intergenic 20.0%
!! ATCTAATTAAAACCATATAG+AGG + chr7_3:24532546-24532565 None:intergenic 20.0%
!! ACTAAAATTAAAAAATGTCC+AGG - chr7_3:24532613-24532632 Msa1098100:intron 20.0%
!! TCTAGTCACAATTATAATTA+TGG + chr7_3:24532689-24532708 None:intergenic 20.0%
!! TTCTAATTATCACAGAAAAA+GGG + chr7_3:24532822-24532841 None:intergenic 20.0%
!! ATTCTAATTATCACAGAAAA+AGG + chr7_3:24532823-24532842 None:intergenic 20.0%
!! ATATCAAGATTTAAATCGTA+AGG - chr7_3:24532917-24532936 Msa1098100:intron 20.0%
!! TAACGACAAACATATATATA+TGG + chr7_3:24532960-24532979 None:intergenic 20.0%
!! TATTTAATGTGAAAAACTTG+TGG - chr7_3:24532978-24532997 Msa1098100:intron 20.0%
!! AACTTGTGGATTTATTTATA+AGG - chr7_3:24532992-24533011 Msa1098100:intron 20.0%
!!! TTTGGAAACTTACTTTTTTT+AGG - chr7_3:24533502-24533521 Msa1098100:intron 20.0%
!!! CTTTTTTTAGGAAACTTATT+TGG - chr7_3:24533514-24533533 Msa1098100:intron 20.0%
!!! GTTTAAATTTTTCGCATTTT+AGG + chr7_3:24533712-24533731 None:intergenic 20.0%
!! GTTTACATAAATAAGAAATC+GGG - chr7_3:24533805-24533824 Msa1098100:CDS 20.0%
!! TTTACATAAATAAGAAATCG+GGG - chr7_3:24533806-24533825 Msa1098100:CDS 20.0%
!! GCAAATTCAATTAATTACTT+TGG + chr7_3:24534081-24534100 None:intergenic 20.0%
!! AAATAAATATCGTACCAAAA+CGG - chr7_3:24534132-24534151 Msa1098100:intron 20.0%
!! TAAAAAAAAACAGTTCAGAA+GGG - chr7_3:24534271-24534290 Msa1098100:intron 20.0%
!! AAAATGGAGAGAATTATAAA+TGG + chr7_3:24534477-24534496 None:intergenic 20.0%
!! TATAAAATAATTAATGCAGG+TGG - chr7_3:24534539-24534558 Msa1098100:intron 20.0%
!! ATAAAATAATTAATGCAGGT+GGG - chr7_3:24534540-24534559 Msa1098100:intron 20.0%
!! AGTAAATACTTTCACTAAAT+GGG + chr7_3:24534567-24534586 None:intergenic 20.0%
!! TAGTAAATACTTTCACTAAA+TGG + chr7_3:24534568-24534587 None:intergenic 20.0%
!!! ACTCAATTTAATTTGACAAA+TGG - chr7_3:24534625-24534644 Msa1098100:intron 20.0%
!!! TGATACAATACATTGTTTTA+GGG + chr7_3:24534770-24534789 None:intergenic 20.0%
!!! TCACTTCTAAATTAGTTTTT+GGG + chr7_3:24534831-24534850 None:intergenic 20.0%
!! ATTTATGTTGAAGATAAGTA+AGG + chr7_3:24534889-24534908 None:intergenic 20.0%
!! CTTTCCTTCTTAAAAAAAAA+AGG - chr7_3:24535048-24535067 Msa1098100:intron 20.0%
!! TTCCTTCTTAAAAAAAAAAG+GGG - chr7_3:24535050-24535069 Msa1098100:intron 20.0%
!!! TCAACTGTTTTTAATTCTTT+TGG - chr7_3:24535716-24535735 Msa1098100:intron 20.0%
!! ATTATTATTTATGACTCATG+TGG + chr7_3:24536254-24536273 None:intergenic 20.0%
!!! ATTCTTCCATTATATTTTGA+AGG - chr7_3:24536410-24536429 Msa1098100:intron 20.0%
!! TAAGTTCCTTCAAAATATAA+TGG + chr7_3:24536419-24536438 None:intergenic 20.0%
!!! TTATATTTTGAAGGAACTTA+TGG - chr7_3:24536419-24536438 Msa1098100:intron 20.0%
!! ACTTTAAATGAAACTAACAA+GGG + chr7_3:24537880-24537899 None:intergenic 20.0%
!! AACTTTAAATGAAACTAACA+AGG + chr7_3:24537881-24537900 None:intergenic 20.0%
!! TAGAAATACAAAATGAAATG+AGG + chr7_3:24537926-24537945 None:intergenic 20.0%
!! GAAGATTAATTACTTCTATA+CGG - chr7_3:24538215-24538234 Msa1098100:intron 20.0%
! TTTGAATATTTCCCTCTATA+TGG - chr7_3:24532531-24532550 Msa1098100:intron 25.0%
! AAATTAAAAAATGTCCAGGT+TGG - chr7_3:24532617-24532636 Msa1098100:intron 25.0%
!!! TATTTTATTTTACACCAACC+TGG + chr7_3:24532634-24532653 None:intergenic 25.0%
!! GATAAATGTGTTCTAAATTG+AGG - chr7_3:24532662-24532681 Msa1098100:intron 25.0%
! ATTTATAAGGTTGTTAACCA+TGG - chr7_3:24533005-24533024 Msa1098100:intron 25.0%
!! TGATACAATGAACATTTTCA+AGG - chr7_3:24533049-24533068 Msa1098100:intron 25.0%
!! TCACTTATCTTTTCTAATTC+AGG + chr7_3:24533089-24533108 None:intergenic 25.0%
! AAAAGATAAGTGAAAGTTCA+AGG - chr7_3:24533096-24533115 Msa1098100:intron 25.0%
! AAAGATAAGTGAAAGTTCAA+GGG - chr7_3:24533097-24533116 Msa1098100:intron 25.0%
!! AGTCTTGACATTTGATTTAT+TGG + chr7_3:24533594-24533613 None:intergenic 25.0%
! ATTTCCAAATACAACTATGT+TGG + chr7_3:24533779-24533798 None:intergenic 25.0%
!!! GTTGTTTTATGCTATTAACA+TGG + chr7_3:24533979-24533998 None:intergenic 25.0%
! AAAAGATTATCTTTGAGCAA+GGG + chr7_3:24534103-24534122 None:intergenic 25.0%
! TAAAAGATTATCTTTGAGCA+AGG + chr7_3:24534104-24534123 None:intergenic 25.0%
! AATAAATATCGTACCAAAAC+GGG - chr7_3:24534133-24534152 Msa1098100:intron 25.0%
! CTAAAAAAAAACAGTTCAGA+AGG - chr7_3:24534270-24534289 Msa1098100:intron 25.0%
! AGAGGGATAATTCTTAAAAA+TGG - chr7_3:24534387-24534406 Msa1098100:intron 25.0%
!!! GTAGCTTTTTTCATTAAAAG+TGG + chr7_3:24534431-24534450 None:intergenic 25.0%
! TATATCTTTATCTCACCAAA+TGG + chr7_3:24534502-24534521 None:intergenic 25.0%
!!! ATTTAATTTGACAAATGGAG+AGG - chr7_3:24534630-24534649 Msa1098100:intron 25.0%
!! GTGATACAATACATTGTTTT+AGG + chr7_3:24534771-24534790 None:intergenic 25.0%
!!! GTCACTTCTAAATTAGTTTT+TGG + chr7_3:24534832-24534851 None:intergenic 25.0%
! TTTAACAAAACTAAACCGTA+TGG - chr7_3:24534941-24534960 Msa1098100:intron 25.0%
!!! AACCCCTTTTTTTTTTAAGA+AGG + chr7_3:24535055-24535074 None:intergenic 25.0%
!! ATTCTTTAGACCATTTTAAG+AGG - chr7_3:24535124-24535143 Msa1098100:intron 25.0%
! ATAATATGGACCTCTTAAAA+TGG + chr7_3:24535137-24535156 None:intergenic 25.0%
! AATCATCATCTATTTGTATG+TGG + chr7_3:24535271-24535290 None:intergenic 25.0%
!! CATCTCTATTTCTTATCATT+AGG + chr7_3:24535598-24535617 None:intergenic 25.0%
! AATAAAGTTGCAATTTGTGA+AGG + chr7_3:24535742-24535761 None:intergenic 25.0%
! TATTATCTTGATCGTTATCA+AGG + chr7_3:24535820-24535839 None:intergenic 25.0%
! AACTTTCACAATCAACTTTA+AGG + chr7_3:24535943-24535962 None:intergenic 25.0%
!!! ATAAGTTCCTGTTTTTTTGA+AGG + chr7_3:24536447-24536466 None:intergenic 25.0%
! TTCAAAAAAACAGGAACTTA+TGG - chr7_3:24536446-24536465 Msa1098100:intron 25.0%
! TAGTTACATTCTATATGCAA+CGG + chr7_3:24536522-24536541 None:intergenic 25.0%
!! ATATTTTGCAACTATTTCAC+TGG + chr7_3:24536981-24537000 None:intergenic 25.0%
!! ATCATTTTCTTGAAACAGAA+TGG + chr7_3:24537191-24537210 None:intergenic 25.0%
!! GTTTATATTTTATGAAGGGA+GGG + chr7_3:24537312-24537331 None:intergenic 25.0%
!! TGTTTATATTTTATGAAGGG+AGG + chr7_3:24537313-24537332 None:intergenic 25.0%
!!! ATTTTAAAATGTACCCTCAT+AGG + chr7_3:24537513-24537532 None:intergenic 25.0%
! AATGAAATGAGGAATAATGT+AGG + chr7_3:24537915-24537934 None:intergenic 25.0%
! TCAACAAAGATTAAATCAAG+TGG - chr7_3:24538075-24538094 Msa1098100:intron 25.0%
!! TGGAGAAAATTTAGTTGATA+AGG - chr7_3:24538157-24538176 Msa1098100:intron 25.0%
! AATGTGTAGATCATTAGTAA+TGG - chr7_3:24538396-24538415 Msa1098100:CDS 25.0%
! TCTATGATATTATCGTTTGT+TGG + chr7_3:24538498-24538517 None:intergenic 25.0%
CAAAATCTTAAGTACAAACC+TGG + chr7_3:24532500-24532519 None:intergenic 30.0%
TGATTGAACTTCAAATTTCC+AGG - chr7_3:24532795-24532814 Msa1098100:intron 30.0%
! TATCTTTTCTAATTCAGGCA+TGG + chr7_3:24533084-24533103 None:intergenic 30.0%
AAGTCGTGAGATTAATAACA+AGG - chr7_3:24533148-24533167 Msa1098100:intron 30.0%
! ACAAGGATTTTGTTCAGTAT+TGG - chr7_3:24533165-24533184 Msa1098100:intron 30.0%
!! GAAATGAATTGTCGATTTAC+CGG + chr7_3:24533265-24533284 None:intergenic 30.0%
TTGCTAAATAATGAGCAGAT+TGG - chr7_3:24533675-24533694 Msa1098100:intron 30.0%
TAAATAATGAGCAGATTGGT+TGG - chr7_3:24533679-24533698 Msa1098100:intron 30.0%
!! CGAGATTGTATTAGCTTTAA+GGG + chr7_3:24533746-24533765 None:intergenic 30.0%
!! TCGAGATTGTATTAGCTTTA+AGG + chr7_3:24533747-24533766 None:intergenic 30.0%
CAAAGTCAGCAAAAACAAAA+AGG - chr7_3:24533926-24533945 Msa1098100:intron 30.0%
!!! GTGTTTTTAATTTCCCGTTT+TGG + chr7_3:24534149-24534168 None:intergenic 30.0%
TTAAAAACACTGCACAAAGA+CGG - chr7_3:24534159-24534178 Msa1098100:intron 30.0%
TAGATCAAGAAGAACAAAAG+TGG - chr7_3:24534335-24534354 Msa1098100:intron 30.0%
AGATCAAGAAGAACAAAAGT+GGG - chr7_3:24534336-24534355 Msa1098100:intron 30.0%
AGGGTAGTTACAATACATAA+AGG + chr7_3:24534751-24534770 None:intergenic 30.0%
!!! AATGCAACATTTGTTTTGAG+AGG - chr7_3:24535345-24535364 Msa1098100:intron 30.0%
TTCACACAAGAATTGAACTA+AGG - chr7_3:24535469-24535488 Msa1098100:intron 30.0%
TATCATTAGGCAAATATTCG+TGG + chr7_3:24535585-24535604 None:intergenic 30.0%
ATCAATCTATAGAAAAGAGG+TGG + chr7_3:24535910-24535929 None:intergenic 30.0%
GCAATCAATCTATAGAAAAG+AGG + chr7_3:24535913-24535932 None:intergenic 30.0%
! AAGTTGATTGTGAAAGTTAC+AGG - chr7_3:24535945-24535964 Msa1098100:intron 30.0%
ATTTGATTCCATCACATTCT+TGG - chr7_3:24535980-24535999 Msa1098100:intron 30.0%
! TGATTTTACCAAGAATGTGA+TGG + chr7_3:24535991-24536010 None:intergenic 30.0%
ACCAAAATACGTTACTTCTA+TGG - chr7_3:24536012-24536031 Msa1098100:intron 30.0%
! ACCATAGAAGTAACGTATTT+TGG + chr7_3:24536016-24536035 None:intergenic 30.0%
! ATGCGTCATATATTGATTGA+TGG - chr7_3:24536209-24536228 Msa1098100:intron 30.0%
AAGAATTAAAAGGGCAAACA+AGG + chr7_3:24536396-24536415 None:intergenic 30.0%
TATGGTTCCTTCAAAAAAAC+AGG - chr7_3:24536437-24536456 Msa1098100:intron 30.0%
ATTATAGAGTGACATATGCA+TGG - chr7_3:24536555-24536574 Msa1098100:intron 30.0%
ATGGTTATGATTAGTACCAT+TGG - chr7_3:24536574-24536593 Msa1098100:intron 30.0%
! TACCTACCAACTTTAAGAAA+GGG - chr7_3:24536702-24536721 Msa1098100:intron 30.0%
! CTTTTTCCCTTTCTTAAAGT+TGG + chr7_3:24536711-24536730 None:intergenic 30.0%
! GTGTTTTCTCTTTTTCTCTT+TGG + chr7_3:24536748-24536767 None:intergenic 30.0%
!! ATATTGGAGTTGATATGTGA+AGG - chr7_3:24537031-24537050 Msa1098100:intron 30.0%
!! TATTGGAGTTGATATGTGAA+GGG - chr7_3:24537032-24537051 Msa1098100:intron 30.0%
AGTGAAAGTCCATTATTGTT+AGG - chr7_3:24537091-24537110 Msa1098100:intron 30.0%
GTGAAAGTCCATTATTGTTA+GGG - chr7_3:24537092-24537111 Msa1098100:intron 30.0%
! ATGTTAACCACAAAAGCATA+TGG + chr7_3:24537268-24537287 None:intergenic 30.0%
! TATGCTTTTGTGGTTAACAT+TGG - chr7_3:24537268-24537287 Msa1098100:intron 30.0%
!!! ACTTAGGGTTGTTTTAAGAA+TGG + chr7_3:24537442-24537461 None:intergenic 30.0%
!!! CATGACATGTTTTTGGTTAT+GGG + chr7_3:24537679-24537698 None:intergenic 30.0%
!!! TCATGACATGTTTTTGGTTA+TGG + chr7_3:24537680-24537699 None:intergenic 30.0%
TCAGGATATATGTGTATTTC+TGG + chr7_3:24537730-24537749 None:intergenic 30.0%
ATCAACCTTATATGTAGAAC+CGG - chr7_3:24538184-24538203 Msa1098100:intron 30.0%
AATTAATCTTCATCGTGAAC+CGG + chr7_3:24538206-24538225 None:intergenic 30.0%
GATTAATTACTTCTATACGG+TGG - chr7_3:24538218-24538237 Msa1098100:intron 30.0%
ACTTTGTACCTATGATAACA+TGG - chr7_3:24538246-24538265 Msa1098100:intron 30.0%
TTTGGTTACCATGTTATCAT+AGG + chr7_3:24538257-24538276 None:intergenic 30.0%
! TGTAGATCATTAGTAATGGA+AGG - chr7_3:24538400-24538419 Msa1098100:CDS 30.0%
! TGATATTATCGTTTGTTGGA+CGG + chr7_3:24538494-24538513 None:intergenic 30.0%
GAGGGAAATATTCAAACGTA+AGG + chr7_3:24532527-24532546 None:intergenic 35.0%
!! AGGATTTTGTTCAGTATTGG+AGG - chr7_3:24533168-24533187 Msa1098100:intron 35.0%
!! GGATTTTGTTCAGTATTGGA+GGG - chr7_3:24533169-24533188 Msa1098100:intron 35.0%
AATCTCTACTCATCTTGAAG+GGG + chr7_3:24533368-24533387 None:intergenic 35.0%
GAATCTCTACTCATCTTGAA+GGG + chr7_3:24533369-24533388 None:intergenic 35.0%
AGAATCTCTACTCATCTTGA+AGG + chr7_3:24533370-24533389 None:intergenic 35.0%
TAACAGCTATCGCCATAATA+AGG + chr7_3:24533404-24533423 None:intergenic 35.0%
TGGCGATAGCTGTTAATTAA+TGG - chr7_3:24533409-24533428 Msa1098100:intron 35.0%
AAGACTGCAGAAATACAAGA+TGG - chr7_3:24533608-24533627 Msa1098100:intron 35.0%
AGAGCCAACATAGTTGTATT+TGG - chr7_3:24533772-24533791 Msa1098100:CDS 35.0%
AAAAAAACAGTTCAGAAGGG+TGG - chr7_3:24534274-24534293 Msa1098100:intron 35.0%
!!! GGGTGGTTTTAGGTTAAAAT+TGG - chr7_3:24534291-24534310 Msa1098100:intron 35.0%
GATCAAGAAGAACAAAAGTG+GGG - chr7_3:24534337-24534356 Msa1098100:intron 35.0%
ATTCGGAAAAGAGAAAAGAG+AGG - chr7_3:24534369-24534388 Msa1098100:intron 35.0%
TTCGGAAAAGAGAAAAGAGA+GGG - chr7_3:24534370-24534389 Msa1098100:intron 35.0%
GGAGAGAATTATAAATGGAG+AGG + chr7_3:24534472-24534491 None:intergenic 35.0%
! TTCTCTCCATTTTCTCCATT+TGG - chr7_3:24534484-24534503 Msa1098100:intron 35.0%
ATCTCACCAAATGGAGAAAA+TGG + chr7_3:24534493-24534512 None:intergenic 35.0%
GATCTTTATTCCTGTTGAAC+CGG - chr7_3:24534652-24534671 Msa1098100:intron 35.0%
ATCTTTATTCCTGTTGAACC+GGG - chr7_3:24534653-24534672 Msa1098100:intron 35.0%
TAGAGTTGTCTAATATGACC+CGG + chr7_3:24534674-24534693 None:intergenic 35.0%
!! TTTTGAGAGGTCAAATGTCA+CGG - chr7_3:24535358-24535377 Msa1098100:intron 35.0%
TGATCAAAAGTTCGATCATG+AGG - chr7_3:24535419-24535438 Msa1098100:intron 35.0%
!! CCAACAAAGAAGAAGTGTTT+AGG + chr7_3:24535499-24535518 None:intergenic 35.0%
CCTAAACACTTCTTCTTTGT+TGG - chr7_3:24535496-24535515 Msa1098100:intron 35.0%
AGGCAAATATTCGTGGTTTA+TGG + chr7_3:24535578-24535597 None:intergenic 35.0%
AATAGAGATGATCTCCAACT+TGG - chr7_3:24535636-24535655 Msa1098100:intron 35.0%
! GCAACTTTATTTAATCCTCG+AGG - chr7_3:24535751-24535770 Msa1098100:intron 35.0%
TTATTTAATCCTCGAGGTCT+AGG - chr7_3:24535757-24535776 Msa1098100:intron 35.0%
GAACTAACAAGTTTATGGTG+TGG + chr7_3:24536488-24536507 None:intergenic 35.0%
GTGGTGAACTAACAAGTTTA+TGG + chr7_3:24536493-24536512 None:intergenic 35.0%
TACATTCTATATGCAACGGT+AGG + chr7_3:24536518-24536537 None:intergenic 35.0%
TGTTAATTTCATGCAGCCAA+TGG + chr7_3:24536593-24536612 None:intergenic 35.0%
TGAAATTAACAACACCCACA+TGG - chr7_3:24536602-24536621 Msa1098100:intron 35.0%
! CTACCTACCAACTTTAAGAA+AGG - chr7_3:24536701-24536720 Msa1098100:intron 35.0%
! TTCCCTTTCTTAAAGTTGGT+AGG + chr7_3:24536707-24536726 None:intergenic 35.0%
! AGCACTGGGACTTAAAATAT+TGG - chr7_3:24537015-24537034 Msa1098100:intron 35.0%
AGTCCACCAGAACAATATTT+GGG + chr7_3:24537070-24537089 None:intergenic 35.0%
AAGTCCACCAGAACAATATT+TGG + chr7_3:24537071-24537090 None:intergenic 35.0%
TAGTGATGCCCTAACAATAA+TGG + chr7_3:24537103-24537122 None:intergenic 35.0%
AACAGAATGGTAACAAGGTT+AGG + chr7_3:24537178-24537197 None:intergenic 35.0%
CTTGAAACAGAATGGTAACA+AGG + chr7_3:24537183-24537202 None:intergenic 35.0%
CTCTTGAAGTCTTCAAAGAT+GGG - chr7_3:24537218-24537237 Msa1098100:intron 35.0%
TCTTGAAGTCTTCAAAGATG+GGG - chr7_3:24537219-24537238 Msa1098100:intron 35.0%
! ACCACAAAAGCATATGGAAT+TGG + chr7_3:24537262-24537281 None:intergenic 35.0%
!!! TAACATTGGTCTTCTTTTGC+AGG - chr7_3:24537282-24537301 Msa1098100:intron 35.0%
TTGCAAAGAAAGTTCCTATG+AGG - chr7_3:24537496-24537515 Msa1098100:intron 35.0%
TGCAAAGAAAGTTCCTATGA+GGG - chr7_3:24537497-24537516 Msa1098100:intron 35.0%
TGTGACACGATTTAGTGAAA+GGG + chr7_3:24537627-24537646 None:intergenic 35.0%
TTGTGACACGATTTAGTGAA+AGG + chr7_3:24537628-24537647 None:intergenic 35.0%
! GGGAAATCATGACATGTTTT+TGG + chr7_3:24537686-24537705 None:intergenic 35.0%
AGCAAATGGTGACATGATTT+GGG + chr7_3:24537706-24537725 None:intergenic 35.0%
AAGCAAATGGTGACATGATT+TGG + chr7_3:24537707-24537726 None:intergenic 35.0%
!! TGTGTATTTCTGGAAGCAAA+TGG + chr7_3:24537720-24537739 None:intergenic 35.0%
! TTGAAATCGTGACACGATTT+TGG + chr7_3:24537793-24537812 None:intergenic 35.0%
ACTCATACGTAAGTAGTGAT+GGG - chr7_3:24538110-24538129 Msa1098100:intron 35.0%
! ATTAGTAATGGAAGGCTGAT+AGG - chr7_3:24538408-24538427 Msa1098100:CDS 35.0%
ATAACATGCTTGTCTCTAGC+TGG - chr7_3:24532304-24532323 Msa1098100:CDS 40.0%
TTTATCGTATGTGCAACCAC+CGG - chr7_3:24532350-24532369 Msa1098100:CDS 40.0%
!! TGAGGAGTATGGATTTTTCC+AGG - chr7_3:24532479-24532498 Msa1098100:intron 40.0%
TTATCACAGAAAAAGGGTCC+TGG + chr7_3:24532816-24532835 None:intergenic 40.0%
TGTTAACCATGGAGTTTCCA+AGG - chr7_3:24533016-24533035 Msa1098100:intron 40.0%
TGTATCATCCATCAACTCCT+TGG + chr7_3:24533036-24533055 None:intergenic 40.0%
AGAGTCTGCAACTTCCATTA+GGG + chr7_3:24533124-24533143 None:intergenic 40.0%
TAGAGTCTGCAACTTCCATT+AGG + chr7_3:24533125-24533144 None:intergenic 40.0%
! AGTATTGGAGGGACACATTA+AGG - chr7_3:24533180-24533199 Msa1098100:intron 40.0%
AACTCCATGAATTCACCTGA+AGG + chr7_3:24533218-24533237 None:intergenic 40.0%
! CAGGTGAATTCATGGAGTTT+TGG - chr7_3:24533219-24533238 Msa1098100:intron 40.0%
CACAAAAGCCTACAAGATAC+CGG - chr7_3:24533243-24533262 Msa1098100:intron 40.0%
TCGATTTACCGGTATCTTGT+AGG + chr7_3:24533254-24533273 None:intergenic 40.0%
ATCTCTACTCATCTTGAAGG+GGG + chr7_3:24533367-24533386 None:intergenic 40.0%
TCTTCTTGATCTACCGAAGA+GGG + chr7_3:24534328-24534347 None:intergenic 40.0%
TTCTTCTTGATCTACCGAAG+AGG + chr7_3:24534329-24534348 None:intergenic 40.0%
!!! TTTTACGGTTCGGTTCCATA+CGG + chr7_3:24534959-24534978 None:intergenic 40.0%
! TGATTAGTCGTAGTCCAAGT+TGG + chr7_3:24535653-24535672 None:intergenic 40.0%
AGAGGTGGTATTTGTCAACT+GGG + chr7_3:24535895-24535914 None:intergenic 40.0%
AAGAGGTGGTATTTGTCAAC+TGG + chr7_3:24535896-24535915 None:intergenic 40.0%
!! GACGCATGTATTCTAAGATG+AGG + chr7_3:24536196-24536215 None:intergenic 40.0%
ATTCTATATGCAACGGTAGG+TGG + chr7_3:24536515-24536534 None:intergenic 40.0%
! TACACAAGAAATGAGAGCAC+TGG - chr7_3:24537000-24537019 Msa1098100:intron 40.0%
!! ACACAAGAAATGAGAGCACT+GGG - chr7_3:24537001-24537020 Msa1098100:intron 40.0%
!! GAGTTGATATGTGAAGGGTT+AGG - chr7_3:24537037-24537056 Msa1098100:intron 40.0%
CTTGACCCCAAATATTGTTC+TGG - chr7_3:24537061-24537080 Msa1098100:intron 40.0%
GTCCACCAGAACAATATTTG+GGG + chr7_3:24537069-24537088 None:intergenic 40.0%
GCTCTTGAAGTCTTCAAAGA+TGG - chr7_3:24537217-24537236 Msa1098100:intron 40.0%
AAGTCTTCAAAGATGGGGAA+TGG - chr7_3:24537224-24537243 Msa1098100:intron 40.0%
! GCCAATTCCATATGCTTTTG+TGG - chr7_3:24537258-24537277 Msa1098100:intron 40.0%
!!! CACAACACGATTTTCAAGTC+AGG + chr7_3:24537748-24537767 None:intergenic 40.0%
! CTGACTTGAAAATCGTGTTG+TGG - chr7_3:24537746-24537765 Msa1098100:CDS 40.0%
GTGACTCAAAATTAGTGTGC+TGG + chr7_3:24537820-24537839 None:intergenic 40.0%
GACTCATACGTAAGTAGTGA+TGG - chr7_3:24538109-24538128 Msa1098100:intron 40.0%
! GTGAACCGGTTCTACATATA+AGG + chr7_3:24538192-24538211 None:intergenic 40.0%
TGCCTGAATTTGTCACAACA+CGG + chr7_3:24538443-24538462 None:intergenic 40.0%
! GTTTGTTGGACGGATGAAAT+AGG + chr7_3:24538484-24538503 None:intergenic 40.0%
GGTGGTTGCACATACGATAA+AGG + chr7_3:24532351-24532370 None:intergenic 45.0%
GATTTCCGGCAAGATAATCC+CGG - chr7_3:24532398-24532417 Msa1098100:intron 45.0%
! TTGAGAGCTTCTGAGGAGTA+TGG - chr7_3:24532468-24532487 Msa1098100:intron 45.0%
TCAACTCCTTGGAAACTCCA+TGG + chr7_3:24533025-24533044 None:intergenic 45.0%
TGGAGTTTCCAAGGAGTTGA+TGG - chr7_3:24533025-24533044 Msa1098100:intron 45.0%
GAAAGTTCAAGGGACCCTAA+TGG - chr7_3:24533107-24533126 Msa1098100:intron 45.0%
AGGCATATTTGTCCACCTTC+AGG - chr7_3:24533200-24533219 Msa1098100:intron 45.0%
TCCACCTTCAGGTGAATTCA+TGG - chr7_3:24533211-24533230 Msa1098100:intron 45.0%
TCCATGAATTCACCTGAAGG+TGG + chr7_3:24533215-24533234 None:intergenic 45.0%
! CGGTATCTTGTAGGCTTTTG+TGG + chr7_3:24533245-24533264 None:intergenic 45.0%
CTCCTGAATACTCAAGTCTC+CGG - chr7_3:24534036-24534055 Msa1098100:intron 45.0%
ATCCGGAGACTTGAGTATTC+AGG + chr7_3:24534041-24534060 None:intergenic 45.0%
! CAGTTCAGAAGGGTGGTTTT+AGG - chr7_3:24534281-24534300 Msa1098100:intron 45.0%
CTTCTTGATCTACCGAAGAG+GGG + chr7_3:24534327-24534346 None:intergenic 45.0%
GAACAAAAGTGGGGATGACT+AGG - chr7_3:24534346-24534365 Msa1098100:intron 45.0%
AAGTGGGGATGACTAGGATT+CGG - chr7_3:24534352-24534371 Msa1098100:intron 45.0%
CTAATATGACCCGGTTCAAC+AGG + chr7_3:24534665-24534684 None:intergenic 45.0%
TGTCACGGTTATCCGAAGTT+CGG - chr7_3:24535373-24535392 Msa1098100:intron 45.0%
TTATCCGAAGTTCGGTCATG+AGG - chr7_3:24535381-24535400 Msa1098100:intron 45.0%
CTTACCTCATGACCGAACTT+CGG + chr7_3:24535388-24535407 None:intergenic 45.0%
AAAATCTGACCTAGACCTCG+AGG + chr7_3:24535769-24535788 None:intergenic 45.0%
GAGTCAGAGATGCTTGATTG+TGG - chr7_3:24535856-24535875 Msa1098100:intron 45.0%
CGTACGAAGTATAGCCATGT+GGG + chr7_3:24536619-24536638 None:intergenic 45.0%
ACGTACGAAGTATAGCCATG+TGG + chr7_3:24536620-24536639 None:intergenic 45.0%
GACCCCAAATATTGTTCTGG+TGG - chr7_3:24537064-24537083 Msa1098100:intron 45.0%
!! GTTAAACTTGGCTCTGGACA+AGG + chr7_3:24537130-24537149 None:intergenic 45.0%
TCCAGAGCCAAGTTTAACCT+TGG - chr7_3:24537132-24537151 Msa1098100:intron 45.0%
CCAGAGCCAAGTTTAACCTT+GGG - chr7_3:24537133-24537152 Msa1098100:intron 45.0%
GGTGTTCCCAAGGTTAAACT+TGG + chr7_3:24537142-24537161 None:intergenic 45.0%
ATCACATATGCTCTTGCGTG+TGG - chr7_3:24538137-24538156 Msa1098100:intron 45.0%
CACCGTGTTGTGACAAATTC+AGG - chr7_3:24538438-24538457 Msa1098100:CDS 45.0%
ACGGATGAAATAGGCAACAG+TGG + chr7_3:24538475-24538494 None:intergenic 45.0%
GAACATGTCAAAGGCTTTGC+TGG + chr7_3:24538522-24538541 None:intergenic 45.0%
!!! ATTTTTTAATTTTAGTATAT+AGG + chr7_3:24532609-24532628 None:intergenic 5.0%
!!! AAATTTAAAACTTTTTTATT+TGG - chr7_3:24533484-24533503 Msa1098100:intron 5.0%
!!! TTATAAGAATTTTATTTTTA+GGG + chr7_3:24537603-24537622 None:intergenic 5.0%
!! ATAATCCCGGTGGTGGATCT+TGG - chr7_3:24532411-24532430 Msa1098100:intron 50.0%
!!! GCACGTTTTGAGAGCTTCTG+AGG - chr7_3:24532461-24532480 Msa1098100:intron 50.0%
CGTCGTCAACGTTGTAGATC+CGG + chr7_3:24534058-24534077 None:intergenic 50.0%
GGCACTAAATCTCCCCTCTT+CGG - chr7_3:24534312-24534331 Msa1098100:intron 50.0%
CTATATGCAACGGTAGGTGG+TGG + chr7_3:24536512-24536531 None:intergenic 50.0%
!! AAACTTGGCTCTGGACAAGG+TGG + chr7_3:24537127-24537146 None:intergenic 50.0%
CCCAAGGTTAAACTTGGCTC+TGG + chr7_3:24537136-24537155 None:intergenic 50.0%
AGGTTAGGATCCCTGTGCTT+GGG + chr7_3:24537163-24537182 None:intergenic 50.0%
AAGGTTAGGATCCCTGTGCT+TGG + chr7_3:24537164-24537183 None:intergenic 50.0%
CAACCACCGGAAAGTAGACC+CGG - chr7_3:24532363-24532382 Msa1098100:CDS 55.0%
TTCCGGCAAGATAATCCCGG+TGG - chr7_3:24532401-24532420 Msa1098100:intron 55.0%
CACCACCGGGATTATCTTGC+CGG + chr7_3:24532406-24532425 None:intergenic 55.0%
TGACCACCAAGATCCACCAC+CGG + chr7_3:24532420-24532439 None:intergenic 55.0%
CTTGGGAACACCCAAGCACA+GGG - chr7_3:24537150-24537169 Msa1098100:intron 55.0%
ACCGGAAAGTAGACCCGGCA+CGG - chr7_3:24532368-24532387 Msa1098100:CDS 60.0%
GAAATCACAGACGCCGTGCC+GGG + chr7_3:24532384-24532403 None:intergenic 60.0%
GGAAATCACAGACGCCGTGC+CGG + chr7_3:24532385-24532404 None:intergenic 60.0%
GGCACGGCGTCTGTGATTTC+CGG - chr7_3:24532384-24532403 Msa1098100:CDS 60.0%
CGGCAAGATAATCCCGGTGG+TGG - chr7_3:24532404-24532423 Msa1098100:intron 60.0%
!! ATCCCGGTGGTGGATCTTGG+TGG - chr7_3:24532414-24532433 Msa1098100:intron 60.0%
GACCACCAAGATCCACCACC+GGG + chr7_3:24532419-24532438 None:intergenic 60.0%
CCTGTGCTTGGGTGTTCCCA+AGG + chr7_3:24537152-24537171 None:intergenic 60.0%
CCTTGGGAACACCCAAGCAC+AGG - chr7_3:24537149-24537168 Msa1098100:intron 60.0%
GTGCCGGGTCTACTTTCCGG+TGG + chr7_3:24532369-24532388 None:intergenic 65.0%
GCCGTGCCGGGTCTACTTTC+CGG + chr7_3:24532372-24532391 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 24532300 24538542 24532300 ID=Msa1098100;Name=Msa1098100
chr7_3 mRNA 24532300 24538542 24532300 ID=Msa1098100-mRNA-1;Parent=Msa1098100;Name=Msa1098100-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|0.25|0.2|5|0|219
chr7_3 exon 24538342 24538542 24538342 ID=Msa1098100-mRNA-1:exon:5332;Parent=Msa1098100-mRNA-1
chr7_3 exon 24537690 24537828 24537690 ID=Msa1098100-mRNA-1:exon:5331;Parent=Msa1098100-mRNA-1
chr7_3 exon 24537578 24537620 24537578 ID=Msa1098100-mRNA-1:exon:5330;Parent=Msa1098100-mRNA-1
chr7_3 exon 24533700 24533860 24533700 ID=Msa1098100-mRNA-1:exon:5329;Parent=Msa1098100-mRNA-1
chr7_3 exon 24532300 24532412 24532300 ID=Msa1098100-mRNA-1:exon:5328;Parent=Msa1098100-mRNA-1
chr7_3 CDS 24538342 24538542 24538342 ID=Msa1098100-mRNA-1:cds;Parent=Msa1098100-mRNA-1
chr7_3 CDS 24537690 24537828 24537690 ID=Msa1098100-mRNA-1:cds;Parent=Msa1098100-mRNA-1
chr7_3 CDS 24537578 24537620 24537578 ID=Msa1098100-mRNA-1:cds;Parent=Msa1098100-mRNA-1
chr7_3 CDS 24533700 24533860 24533700 ID=Msa1098100-mRNA-1:cds;Parent=Msa1098100-mRNA-1
chr7_3 CDS 24532300 24532412 24532300 ID=Msa1098100-mRNA-1:cds;Parent=Msa1098100-mRNA-1
Gene Sequence

>Msa1098100

ATGGATAACATGCTTGTCTCTAGCTGGTTTCATCTTCATTCAACTGTGCCTTTATCGTATGTGCAACCACCGGAAAGTAGACCCGGCACGGCGTCTGTGATTTCCGGCAAGATAATCCCGGTGGTGGATCTTGGTGGTCATGATCATGCTGAAACATTACTGCACGTTTTGAGAGCTTCTGAGGAGTATGGATTTTTCCAGGTTGTTAACCATGGAGTTTCCAAGGAGTTGATGGATGATACAATGAACATTTTCAAGGAATTTCATGCCATGCCTGAATTAGAAAAGATAAGTGAAAGTTCAAGGGACCCTAATGGAAGTTGCAGACTCTATACAAGTCGTGAATTCATGGAGTTTTGGCCACAAAAGCCTACAAGATACCGTGAAATAGTTGCAAAATATACACAAGAAATGAGAGCACTGGGACTTAAAATATTGGAGTTGATATGTGAAGGGTTAGGACTTGACCCCAAATATTGTTCTGGTGGACTTAGTGAAAGTCCATTATTGTTAGGGCATCACTATCCACCTTGTCCAGAGCCAAGAGCAGAACACCGTGTTGTGACAAATTCAGGCACTGCAAGAACCACTGTTGCCTATTTCATCCGTCCAACAAACGATAATATCATAGAACCAGCAAAGCCTTTGACATGTTCT

Protein sequence

>Msa1098100

MDNMLVSSWFHLHSTVPLSYVQPPESRPGTASVISGKIIPVVDLGGHDHAETLLHVLRASEEYGFFQVVNHGVSKELMDDTMNIFKEFHAMPELEKISESSRDPNGSCRLYTSREFMEFWPQKPTRYREIVAKYTQEMRALGLKILELICEGLGLDPKYCSGGLSESPLLLGHHYPPCPEPRAEHRVVTNSGTARTTVAYFIRPTNDNIIEPAKPLTCS