AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1464140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1464140 MtrunA17_Chr5g0395001 95.833 168 7 0 1 168 1 168 9.31e-110 310
Msa1464140 MtrunA17_Chr1g0205201 65.455 165 36 3 1 164 1 145 2.50e-65 197
Msa1464140 MtrunA17_Chr1g0185321 53.073 179 67 3 1 162 1 179 3.39e-38 129
Msa1464140 MtrunA17_Chr7g0260061 51.701 147 64 4 1 141 1 146 4.34e-38 128
Msa1464140 MtrunA17_Chr1g0205181 50.000 150 52 4 1 149 1 128 1.31e-37 126
Msa1464140 MtrunA17_Chr1g0205191 61.682 107 39 1 1 107 1 105 3.43e-32 111
Msa1464140 MtrunA17_Chr1g0201291 57.955 88 34 2 1 87 1 86 8.76e-25 91.7
Msa1464140 MtrunA17_Chr3g0118471 42.353 85 46 2 24 105 46 130 7.93e-16 71.6
Msa1464140 MtrunA17_Chr5g0429901 34.127 126 69 4 7 119 4 128 9.17e-16 71.2
Msa1464140 MtrunA17_Chr2g0278971 35.606 132 73 5 7 127 48 178 1.11e-14 68.9
Msa1464140 MtrunA17_Chr2g0278981 35.714 98 60 2 25 120 32 128 6.16e-13 63.5
Msa1464140 MtrunA17_Chr8g0378461 31.092 119 72 3 25 134 33 150 1.88e-11 59.7
Msa1464140 MtrunA17_Chr6g0484651 39.437 71 42 1 28 98 43 112 2.06e-11 58.2
Msa1464140 MtrunA17_Chr5g0394991 33.571 140 81 7 1 130 1 138 2.07e-11 60.1
Msa1464140 MtrunA17_Chr3g0121381 36.486 74 46 1 25 97 28 101 7.48e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1464140 AT3G22600.1 54.335 173 66 6 5 168 2 170 3.10e-51 162
Msa1464140 AT4G14815.1 48.125 160 67 4 5 163 2 146 1.57e-39 132
Msa1464140 AT2G48130.2 42.286 175 86 5 1 162 1 173 1.00e-32 115
Msa1464140 AT2G48130.6 42.286 175 86 5 1 162 1 173 1.00e-32 115
Msa1464140 AT2G48130.4 42.286 175 86 5 1 162 1 173 1.00e-32 115
Msa1464140 AT2G48130.5 42.286 175 86 5 1 162 1 173 1.00e-32 115
Msa1464140 AT2G48130.1 42.286 175 86 5 1 162 1 173 1.00e-32 115
Msa1464140 AT2G48130.3 42.286 175 86 5 1 162 1 173 1.00e-32 115
Msa1464140 AT1G03103.1 41.520 171 83 6 6 161 1 169 7.72e-28 102
Msa1464140 AT5G09370.2 40.000 90 50 2 26 113 26 113 5.47e-17 73.2
Msa1464140 AT5G09370.1 40.000 90 50 2 26 113 26 113 5.55e-17 73.9
Msa1464140 AT5G09370.3 40.000 90 50 2 26 113 26 113 5.72e-17 73.9
Msa1464140 AT3G43720.2 36.306 157 76 5 21 160 31 180 1.14e-16 73.9
Msa1464140 AT3G43720.1 36.076 158 77 5 21 160 31 182 5.16e-16 72.4
Msa1464140 AT1G55260.2 25.275 182 116 5 1 164 44 223 6.09e-15 70.1
Msa1464140 AT2G13820.1 27.711 166 112 5 1 161 1 163 9.19e-15 68.6
Msa1464140 AT2G13820.3 27.711 166 112 5 1 161 13 175 1.13e-14 68.6
Msa1464140 AT1G55260.1 28.205 156 104 4 1 149 44 198 2.33e-14 68.6
Msa1464140 AT4G08670.1 33.951 162 87 6 26 168 46 206 3.21e-14 67.8
Msa1464140 AT2G13820.2 31.034 116 74 4 1 113 1 113 8.04e-14 65.1
Msa1464140 AT2G44290.1 31.875 160 91 6 6 149 9 166 6.45e-13 64.3
Msa1464140 AT2G48140.1 34.884 129 66 5 8 129 4 121 1.24e-11 60.8
Msa1464140 AT3G22580.1 38.739 111 56 4 5 105 2 110 2.10e-11 58.5
Msa1464140 AT2G48140.2 35.965 114 65 4 8 114 4 116 2.61e-11 58.5
Msa1464140 AT2G44300.1 39.726 73 43 1 25 96 32 104 5.00e-11 59.3
Msa1464140 AT1G36150.1 32.174 115 75 2 26 138 43 156 8.63e-11 59.3

Find 72 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCCGTTGGTTCTTATTT+TGG 0.199878 tig0043916:-7130 Msa1464140:CDS
CAGCAAAATGAATATGAGTT+TGG 0.304193 tig0043916:-7917 Msa1464140:CDS
TGTGAAGACAATGGTGGTTT+TGG 0.312241 tig0043916:+8037 None:intergenic
AATGAATATGAGTTTGGTTT+TGG 0.324175 tig0043916:-7911 Msa1464140:CDS
GTTCCTGCTGGTGAGTCTGC+TGG 0.326138 tig0043916:+7353 None:intergenic
GTACCTGATGGAACTGAGTT+TGG 0.355549 tig0043916:+7317 None:intergenic
AATTCCTCAACCCCGTCTTC+AGG 0.363035 tig0043916:-7793 Msa1464140:CDS
TTCCTGCTGGTGAGTCTGCT+GGG 0.376602 tig0043916:+7354 None:intergenic
AGTCAGTGTAAAACTAATAA+TGG 0.381064 tig0043916:-7619 Msa1464140:intron
TTGAAATTTGTGTGTTATCA+TGG 0.392639 tig0043916:-6883 Msa1464140:three_prime_UTR
GCCTATGTCAGGTTCTCGGC+GGG 0.418113 tig0043916:-7726 Msa1464140:CDS
CAAAAGAATAGCATTTCAAA+TGG 0.424229 tig0043916:+7057 None:intergenic
GAACATACTGATTCTCAGTT+GGG 0.431602 tig0043916:-7083 Msa1464140:three_prime_UTR
ATCAAAGTCCCTTGTGTTGA+AGG 0.438498 tig0043916:-6997 Msa1464140:three_prime_UTR
GACTCTGCTTCTGTTCCTGC+TGG 0.439322 tig0043916:+7341 None:intergenic
TTTGCATAAAACAATTCAAA+TGG 0.442092 tig0043916:-7944 Msa1464140:exon
AGCCTTGCCTGGTGCTTGCA+AGG 0.452642 tig0043916:-7659 Msa1464140:CDS
TGAACATACTGATTCTCAGT+TGG 0.466025 tig0043916:-7084 Msa1464140:three_prime_UTR
TCCATCACCGGTTGAGGGAG+TGG 0.468250 tig0043916:+7182 None:intergenic
TCAAAATCCACTCCCTCAAC+CGG 0.469317 tig0043916:-7189 Msa1464140:CDS
TTTACACTGACTGGTGGGTG+GGG 0.471462 tig0043916:+7630 None:intergenic
GGATGATCCATCACCGGTTG+AGG 0.472460 tig0043916:+7176 None:intergenic
CAGCTTGATTGAATTTCCAC+TGG 0.474292 tig0043916:+7155 None:intergenic
GTTTGCACCTTGCAAGCACC+AGG 0.476162 tig0043916:+7652 None:intergenic
TTGAGCAGCATCCTGAAGAC+GGG 0.489604 tig0043916:+7782 None:intergenic
TCCACTCCCTCAACCGGTGA+TGG 0.490607 tig0043916:-7183 Msa1464140:CDS
TATAGTTAAGACAAGGTGAT+AGG 0.493717 tig0043916:+7824 None:intergenic
CTATGTCAGGTTCTCGGCGG+GGG 0.499514 tig0043916:-7724 Msa1464140:CDS
ACTCAGGCTCTAGCCTTGCC+TGG 0.500358 tig0043916:-7670 Msa1464140:CDS
CACCTTGCAAGCACCAGGCA+AGG 0.514952 tig0043916:+7657 None:intergenic
CTATGCCTATGTCAGGTTCT+CGG 0.519779 tig0043916:-7730 Msa1464140:CDS
ATCGAGTTGTACAAATGTCT+TGG 0.528842 tig0043916:-7851 Msa1464140:CDS
CCTTGTCTTAACTATATCAC+AGG 0.529529 tig0043916:-7817 Msa1464140:CDS
AATCAAGCTGTCAATTCCGT+TGG 0.530988 tig0043916:-7142 Msa1464140:CDS
AAAAGAATAGCATTTCAAAT+GGG 0.533508 tig0043916:+7058 None:intergenic
TCTCCAAACTCAGTTCCATC+AGG 0.538578 tig0043916:-7320 Msa1464140:intron
TCAAAGTCCCTTGTGTTGAA+GGG 0.544913 tig0043916:-6996 Msa1464140:three_prime_UTR
GCATCCTGAAGACGGGGTTG+AGG 0.545184 tig0043916:+7789 None:intergenic
GAAAACCTTGGTATAGACCT+TGG 0.545588 tig0043916:+7973 None:intergenic
ACAACCACTATGCCTATGTC+AGG 0.550990 tig0043916:-7737 Msa1464140:CDS
TGTTCAGAAAACTGAGGCAT+AGG 0.555263 tig0043916:+7101 None:intergenic
TCCACTGGATGATCCATCAC+CGG 0.557164 tig0043916:+7170 None:intergenic
TTTGAGCAGCATCCTGAAGA+CGG 0.563609 tig0043916:+7781 None:intergenic
TGCAAATGTGTTGAAAACCT+TGG 0.565712 tig0043916:+7961 None:intergenic
GATGATCCATCACCGGTTGA+GGG 0.571557 tig0043916:+7177 None:intergenic
AAAATCACGTAACCCAATAG+AGG 0.575709 tig0043916:+6952 None:intergenic
TCCCCAGCAGACTCACCAGC+AGG 0.577866 tig0043916:-7356 Msa1464140:CDS
CTGCTCAAACCTTGCCAGTG+TGG 0.578926 tig0043916:-7767 Msa1464140:CDS
CTGACAATATTAAGTTGATG+TGG 0.579771 tig0043916:+8102 None:intergenic
GTGAATTCACCACACTGGCA+AGG 0.582240 tig0043916:+7758 None:intergenic
TCTCCTTTATGAATAAAACA+TGG 0.582589 tig0043916:-6907 Msa1464140:three_prime_UTR
GTAATCGCAATGTTGTGCGC+TGG 0.583284 tig0043916:-7886 Msa1464140:CDS
TCCTGCTGGTGAGTCTGCTG+GGG 0.602035 tig0043916:+7355 None:intergenic
TGCCTATGTCAGGTTCTCGG+CGG 0.603440 tig0043916:-7727 Msa1464140:CDS
CCCCGCCGAGAACCTGACAT+AGG 0.604243 tig0043916:+7725 None:intergenic
AATCAGCATCAATCAAACTC+AGG 0.612879 tig0043916:-7686 Msa1464140:CDS
AGAACCTGACATAGGCATAG+TGG 0.618190 tig0043916:+7733 None:intergenic
TGTTTACTCTGTGAAGACAA+TGG 0.620490 tig0043916:+8028 None:intergenic
ATATCTCGTTAGATAGTAGG+AGG 0.621459 tig0043916:-8135 None:intergenic
CCTATGTCAGGTTCTCGGCG+GGG 0.623545 tig0043916:-7725 Msa1464140:CDS
AGACTGAACCCTTCAACACA+AGG 0.628092 tig0043916:+6988 None:intergenic
GACTGAACCCTTCAACACAA+GGG 0.644958 tig0043916:+6989 None:intergenic
GCTGCCAAAATAAGAACCAA+CGG 0.650717 tig0043916:+7126 None:intergenic
TGACAATATTAAGTTGATGT+GGG 0.657518 tig0043916:+8103 None:intergenic
ACCGGTGATGGATCATCCAG+TGG 0.660594 tig0043916:-7171 Msa1464140:CDS
CCTGTGATATAGTTAAGACA+AGG 0.669942 tig0043916:+7817 None:intergenic
CTTGTCTTAACTATATCACA+GGG 0.674749 tig0043916:-7816 Msa1464140:CDS
ATATACCAAGGTCTATACCA+AGG 0.695506 tig0043916:-7978 Msa1464140:five_prime_UTR
TGGTTGTGAATTCACCACAC+TGG 0.698930 tig0043916:+7753 None:intergenic
TGAGCAGCATCCTGAAGACG+GGG 0.700847 tig0043916:+7783 None:intergenic
TTACTCTGTGAAGACAATGG+TGG 0.704767 tig0043916:+8031 None:intergenic
TCAGTATGTTCAGAAAACTG+AGG 0.728921 tig0043916:+7095 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATAGTTTAGAATAT+GGG + tig0043916:7565-7584 None:intergenic 10.0%
!!! AAATATATAGTTTAGAATAT+GGG + tig0043916:7565-7584 None:intergenic 10.0%
!!! GAAATATATAGTTTAGAATA+TGG + tig0043916:7566-7585 None:intergenic 15.0%
!!! GAAATATATAGTTTAGAATA+TGG + tig0043916:7566-7585 None:intergenic 15.0%
!! TTTGCATAAAACAATTCAAA+TGG - tig0043916:7035-7054 Msa1464140:three_prime_UTR 20.0%
!! CAAATGAATTTCAACTTAAA+TGG + tig0043916:7759-7778 None:intergenic 20.0%
!! AAAAGAATAGCATTTCAAAT+GGG + tig0043916:7924-7943 None:intergenic 20.0%
!!! AATCCATGTTTTATTCATAA+AGG + tig0043916:8078-8097 None:intergenic 20.0%
!! TTTGCATAAAACAATTCAAA+TGG - tig0043916:7035-7054 Msa1464140:three_prime_UTR 20.0%
!! CAAATGAATTTCAACTTAAA+TGG + tig0043916:7759-7778 None:intergenic 20.0%
!! AAAAGAATAGCATTTCAAAT+GGG + tig0043916:7924-7943 None:intergenic 20.0%
!!! AATCCATGTTTTATTCATAA+AGG + tig0043916:8078-8097 None:intergenic 20.0%
!!! TGACAATATTAAGTTGATGT+GGG + tig0043916:6879-6898 None:intergenic 25.0%
! AACCAAAAAAGAATATACCA+AGG - tig0043916:6989-7008 Msa1464140:three_prime_UTR 25.0%
!!! AATGAATATGAGTTTGGTTT+TGG - tig0043916:7068-7087 Msa1464140:three_prime_UTR 25.0%
!!! ATTATTAGTTTTACACTGAC+TGG + tig0043916:7361-7380 None:intergenic 25.0%
! AGTCAGTGTAAAACTAATAA+TGG - tig0043916:7360-7379 Msa1464140:CDS 25.0%
! TCTCAATGTTCATATAGTTA+GGG + tig0043916:7453-7472 None:intergenic 25.0%
! ATCTCAATGTTCATATAGTT+AGG + tig0043916:7454-7473 None:intergenic 25.0%
!!! ACTTATCTTTTTGAGTATCA+AGG + tig0043916:7538-7557 None:intergenic 25.0%
! TTCAACTTAAATGGTTAACA+AGG + tig0043916:7750-7769 None:intergenic 25.0%
!!! TTAAGTTGAAATTCATTTGC+AGG - tig0043916:7760-7779 Msa1464140:CDS 25.0%
! CAAAAGAATAGCATTTCAAA+TGG + tig0043916:7925-7944 None:intergenic 25.0%
! TCTCCTTTATGAATAAAACA+TGG - tig0043916:8072-8091 Msa1464140:five_prime_UTR 25.0%
! TTGAAATTTGTGTGTTATCA+TGG - tig0043916:8096-8115 Msa1464140:five_prime_UTR 25.0%
!!! TGACAATATTAAGTTGATGT+GGG + tig0043916:6879-6898 None:intergenic 25.0%
! AACCAAAAAAGAATATACCA+AGG - tig0043916:6989-7008 Msa1464140:three_prime_UTR 25.0%
!!! AATGAATATGAGTTTGGTTT+TGG - tig0043916:7068-7087 Msa1464140:three_prime_UTR 25.0%
!!! ATTATTAGTTTTACACTGAC+TGG + tig0043916:7361-7380 None:intergenic 25.0%
! AGTCAGTGTAAAACTAATAA+TGG - tig0043916:7360-7379 Msa1464140:CDS 25.0%
! TCTCAATGTTCATATAGTTA+GGG + tig0043916:7453-7472 None:intergenic 25.0%
! ATCTCAATGTTCATATAGTT+AGG + tig0043916:7454-7473 None:intergenic 25.0%
!!! ACTTATCTTTTTGAGTATCA+AGG + tig0043916:7538-7557 None:intergenic 25.0%
! TTCAACTTAAATGGTTAACA+AGG + tig0043916:7750-7769 None:intergenic 25.0%
!!! TTAAGTTGAAATTCATTTGC+AGG - tig0043916:7760-7779 Msa1464140:CDS 25.0%
! CAAAAGAATAGCATTTCAAA+TGG + tig0043916:7925-7944 None:intergenic 25.0%
! TCTCCTTTATGAATAAAACA+TGG - tig0043916:8072-8091 Msa1464140:five_prime_UTR 25.0%
! TTGAAATTTGTGTGTTATCA+TGG - tig0043916:8096-8115 Msa1464140:five_prime_UTR 25.0%
!! CTGACAATATTAAGTTGATG+TGG + tig0043916:6880-6899 None:intergenic 30.0%
!!! GACCTTGGTATATTCTTTTT+TGG + tig0043916:6994-7013 None:intergenic 30.0%
CAGCAAAATGAATATGAGTT+TGG - tig0043916:7062-7081 Msa1464140:three_prime_UTR 30.0%
TATAGTTAAGACAAGGTGAT+AGG + tig0043916:7158-7177 None:intergenic 30.0%
CTTGTCTTAACTATATCACA+GGG - tig0043916:7163-7182 Msa1464140:CDS 30.0%
AATGTTCATATAGTTAGGGT+TGG + tig0043916:7449-7468 None:intergenic 30.0%
!!! AATTCCGTTGGTTCTTATTT+TGG - tig0043916:7849-7868 Msa1464140:CDS 30.0%
! ATTCATTTTGTGACCTCTAT+TGG - tig0043916:8014-8033 Msa1464140:five_prime_UTR 30.0%
! TTCATTTTGTGACCTCTATT+GGG - tig0043916:8015-8034 Msa1464140:five_prime_UTR 30.0%
! ACGTGATTTTGTATTATGAG+AGG - tig0043916:8040-8059 Msa1464140:five_prime_UTR 30.0%
! CGTGATTTTGTATTATGAGA+GGG - tig0043916:8041-8060 Msa1464140:five_prime_UTR 30.0%
!! CTGACAATATTAAGTTGATG+TGG + tig0043916:6880-6899 None:intergenic 30.0%
!!! GACCTTGGTATATTCTTTTT+TGG + tig0043916:6994-7013 None:intergenic 30.0%
CAGCAAAATGAATATGAGTT+TGG - tig0043916:7062-7081 Msa1464140:three_prime_UTR 30.0%
TATAGTTAAGACAAGGTGAT+AGG + tig0043916:7158-7177 None:intergenic 30.0%
CTTGTCTTAACTATATCACA+GGG - tig0043916:7163-7182 Msa1464140:CDS 30.0%
AATGTTCATATAGTTAGGGT+TGG + tig0043916:7449-7468 None:intergenic 30.0%
!!! AATTCCGTTGGTTCTTATTT+TGG - tig0043916:7849-7868 Msa1464140:CDS 30.0%
! ATTCATTTTGTGACCTCTAT+TGG - tig0043916:8014-8033 Msa1464140:five_prime_UTR 30.0%
! TTCATTTTGTGACCTCTATT+GGG - tig0043916:8015-8034 Msa1464140:five_prime_UTR 30.0%
! ACGTGATTTTGTATTATGAG+AGG - tig0043916:8040-8059 Msa1464140:five_prime_UTR 30.0%
! CGTGATTTTGTATTATGAGA+GGG - tig0043916:8041-8060 Msa1464140:five_prime_UTR 30.0%
!!! GTTTTGGAAGAACAATGTCT+AGG + tig0043916:6929-6948 None:intergenic 35.0%
TGTTTACTCTGTGAAGACAA+TGG + tig0043916:6954-6973 None:intergenic 35.0%
ATATACCAAGGTCTATACCA+AGG - tig0043916:7001-7020 Msa1464140:three_prime_UTR 35.0%
TGCAAATGTGTTGAAAACCT+TGG + tig0043916:7021-7040 None:intergenic 35.0%
! ATCGAGTTGTACAAATGTCT+TGG - tig0043916:7128-7147 Msa1464140:CDS 35.0%
CCTGTGATATAGTTAAGACA+AGG + tig0043916:7165-7184 None:intergenic 35.0%
CCTTGTCTTAACTATATCAC+AGG - tig0043916:7162-7181 Msa1464140:CDS 35.0%
AATCAGCATCAATCAAACTC+AGG - tig0043916:7293-7312 Msa1464140:intron 35.0%
!!! TTAGTTTTACACTGACTGGT+GGG + tig0043916:7357-7376 None:intergenic 35.0%
!!! ATTAGTTTTACACTGACTGG+TGG + tig0043916:7358-7377 None:intergenic 35.0%
TCCATCAGGTACTAACATAT+TGG - tig0043916:7673-7692 Msa1464140:CDS 35.0%
CCATCAGGTACTAACATATT+GGG - tig0043916:7674-7693 Msa1464140:CDS 35.0%
CATCAGGTACTAACATATTG+GGG - tig0043916:7675-7694 Msa1464140:CDS 35.0%
TGATCATCCAATTTGAACCT+TGG - tig0043916:7724-7743 Msa1464140:CDS 35.0%
TTAAATGGTTAACAAGGCCA+AGG + tig0043916:7744-7763 None:intergenic 35.0%
TGAAATTCATTTGCAGGAAC+CGG - tig0043916:7766-7785 Msa1464140:CDS 35.0%
TCAGTATGTTCAGAAAACTG+AGG + tig0043916:7887-7906 None:intergenic 35.0%
!! TGAACATACTGATTCTCAGT+TGG - tig0043916:7895-7914 Msa1464140:CDS 35.0%
!! GAACATACTGATTCTCAGTT+GGG - tig0043916:7896-7915 Msa1464140:CDS 35.0%
AAAATCACGTAACCCAATAG+AGG + tig0043916:8030-8049 None:intergenic 35.0%
TTTATGACAACCACTGAAAG+AGG - tig0043916:8121-8140 Msa1464140:five_prime_UTR 35.0%
!!! GTTTTGGAAGAACAATGTCT+AGG + tig0043916:6929-6948 None:intergenic 35.0%
TGTTTACTCTGTGAAGACAA+TGG + tig0043916:6954-6973 None:intergenic 35.0%
ATATACCAAGGTCTATACCA+AGG - tig0043916:7001-7020 Msa1464140:three_prime_UTR 35.0%
TGCAAATGTGTTGAAAACCT+TGG + tig0043916:7021-7040 None:intergenic 35.0%
! ATCGAGTTGTACAAATGTCT+TGG - tig0043916:7128-7147 Msa1464140:CDS 35.0%
CCTGTGATATAGTTAAGACA+AGG + tig0043916:7165-7184 None:intergenic 35.0%
CCTTGTCTTAACTATATCAC+AGG - tig0043916:7162-7181 Msa1464140:CDS 35.0%
AATCAGCATCAATCAAACTC+AGG - tig0043916:7293-7312 Msa1464140:intron 35.0%
!!! TTAGTTTTACACTGACTGGT+GGG + tig0043916:7357-7376 None:intergenic 35.0%
!!! ATTAGTTTTACACTGACTGG+TGG + tig0043916:7358-7377 None:intergenic 35.0%
TCCATCAGGTACTAACATAT+TGG - tig0043916:7673-7692 Msa1464140:CDS 35.0%
CCATCAGGTACTAACATATT+GGG - tig0043916:7674-7693 Msa1464140:CDS 35.0%
CATCAGGTACTAACATATTG+GGG - tig0043916:7675-7694 Msa1464140:CDS 35.0%
TGATCATCCAATTTGAACCT+TGG - tig0043916:7724-7743 Msa1464140:CDS 35.0%
TTAAATGGTTAACAAGGCCA+AGG + tig0043916:7744-7763 None:intergenic 35.0%
TGAAATTCATTTGCAGGAAC+CGG - tig0043916:7766-7785 Msa1464140:CDS 35.0%
TCAGTATGTTCAGAAAACTG+AGG + tig0043916:7887-7906 None:intergenic 35.0%
!! TGAACATACTGATTCTCAGT+TGG - tig0043916:7895-7914 Msa1464140:CDS 35.0%
!! GAACATACTGATTCTCAGTT+GGG - tig0043916:7896-7915 Msa1464140:CDS 35.0%
AAAATCACGTAACCCAATAG+AGG + tig0043916:8030-8049 None:intergenic 35.0%
! AGGCTTTTGTAGAGTAAGGA+CGG + tig0043916:6909-6928 None:intergenic 40.0%
! GTCTAGGCTTTTGTAGAGTA+AGG + tig0043916:6913-6932 None:intergenic 40.0%
! TGTGAAGACAATGGTGGTTT+TGG + tig0043916:6945-6964 None:intergenic 40.0%
TTACTCTGTGAAGACAATGG+TGG + tig0043916:6951-6970 None:intergenic 40.0%
GAAAACCTTGGTATAGACCT+TGG + tig0043916:7009-7028 None:intergenic 40.0%
CCCAATATGTTAGTACCTGA+TGG + tig0043916:7677-7696 None:intergenic 40.0%
AACAAGGCCAAGGTTCAAAT+TGG + tig0043916:7734-7753 None:intergenic 40.0%
CAGCTTGATTGAATTTCCAC+TGG + tig0043916:7827-7846 None:intergenic 40.0%
AATCAAGCTGTCAATTCCGT+TGG - tig0043916:7837-7856 Msa1464140:CDS 40.0%
GCTGCCAAAATAAGAACCAA+CGG + tig0043916:7856-7875 None:intergenic 40.0%
TGTTCAGAAAACTGAGGCAT+AGG + tig0043916:7881-7900 None:intergenic 40.0%
ATCAAAGTCCCTTGTGTTGA+AGG - tig0043916:7982-8001 Msa1464140:five_prime_UTR 40.0%
TCAAAGTCCCTTGTGTTGAA+GGG - tig0043916:7983-8002 Msa1464140:five_prime_UTR 40.0%
! AGGCTTTTGTAGAGTAAGGA+CGG + tig0043916:6909-6928 None:intergenic 40.0%
! GTCTAGGCTTTTGTAGAGTA+AGG + tig0043916:6913-6932 None:intergenic 40.0%
! TGTGAAGACAATGGTGGTTT+TGG + tig0043916:6945-6964 None:intergenic 40.0%
TTACTCTGTGAAGACAATGG+TGG + tig0043916:6951-6970 None:intergenic 40.0%
GAAAACCTTGGTATAGACCT+TGG + tig0043916:7009-7028 None:intergenic 40.0%
CCCAATATGTTAGTACCTGA+TGG + tig0043916:7677-7696 None:intergenic 40.0%
AACAAGGCCAAGGTTCAAAT+TGG + tig0043916:7734-7753 None:intergenic 40.0%
CAGCTTGATTGAATTTCCAC+TGG + tig0043916:7827-7846 None:intergenic 40.0%
AATCAAGCTGTCAATTCCGT+TGG - tig0043916:7837-7856 Msa1464140:CDS 40.0%
GCTGCCAAAATAAGAACCAA+CGG + tig0043916:7856-7875 None:intergenic 40.0%
TGTTCAGAAAACTGAGGCAT+AGG + tig0043916:7881-7900 None:intergenic 40.0%
ATCAAAGTCCCTTGTGTTGA+AGG - tig0043916:7982-8001 Msa1464140:five_prime_UTR 40.0%
TCAAAGTCCCTTGTGTTGAA+GGG - tig0043916:7983-8002 Msa1464140:five_prime_UTR 40.0%
TTTGAGCAGCATCCTGAAGA+CGG + tig0043916:7201-7220 None:intergenic 45.0%
TGGTTGTGAATTCACCACAC+TGG + tig0043916:7229-7248 None:intergenic 45.0%
ACAACCACTATGCCTATGTC+AGG - tig0043916:7242-7261 Msa1464140:intron 45.0%
AGAACCTGACATAGGCATAG+TGG + tig0043916:7249-7268 None:intergenic 45.0%
CTATGCCTATGTCAGGTTCT+CGG - tig0043916:7249-7268 Msa1464140:intron 45.0%
!! TTTTACACTGACTGGTGGGT+GGG + tig0043916:7353-7372 None:intergenic 45.0%
TCTCCAAACTCAGTTCCATC+AGG - tig0043916:7659-7678 Msa1464140:CDS 45.0%
GTACCTGATGGAACTGAGTT+TGG + tig0043916:7665-7684 None:intergenic 45.0%
!! TGAGGGAGTGGATTTTGATC+CGG + tig0043916:7788-7807 None:intergenic 45.0%
TCAAAATCCACTCCCTCAAC+CGG - tig0043916:7790-7809 Msa1464140:CDS 45.0%
GACTGAACCCTTCAACACAA+GGG + tig0043916:7993-8012 None:intergenic 45.0%
AGACTGAACCCTTCAACACA+AGG + tig0043916:7994-8013 None:intergenic 45.0%
TTTGAGCAGCATCCTGAAGA+CGG + tig0043916:7201-7220 None:intergenic 45.0%
TGGTTGTGAATTCACCACAC+TGG + tig0043916:7229-7248 None:intergenic 45.0%
ACAACCACTATGCCTATGTC+AGG - tig0043916:7242-7261 Msa1464140:intron 45.0%
AGAACCTGACATAGGCATAG+TGG + tig0043916:7249-7268 None:intergenic 45.0%
CTATGCCTATGTCAGGTTCT+CGG - tig0043916:7249-7268 Msa1464140:intron 45.0%
!! TTTTACACTGACTGGTGGGT+GGG + tig0043916:7353-7372 None:intergenic 45.0%
TCTCCAAACTCAGTTCCATC+AGG - tig0043916:7659-7678 Msa1464140:CDS 45.0%
GTACCTGATGGAACTGAGTT+TGG + tig0043916:7665-7684 None:intergenic 45.0%
!! TGAGGGAGTGGATTTTGATC+CGG + tig0043916:7788-7807 None:intergenic 45.0%
TCAAAATCCACTCCCTCAAC+CGG - tig0043916:7790-7809 Msa1464140:CDS 45.0%
GACTGAACCCTTCAACACAA+GGG + tig0043916:7993-8012 None:intergenic 45.0%
AGACTGAACCCTTCAACACA+AGG + tig0043916:7994-8013 None:intergenic 45.0%
GTAATCGCAATGTTGTGCGC+TGG - tig0043916:7093-7112 Msa1464140:exon 50.0%
AATTCCTCAACCCCGTCTTC+AGG - tig0043916:7186-7205 Msa1464140:CDS 50.0%
TTGAGCAGCATCCTGAAGAC+GGG + tig0043916:7200-7219 None:intergenic 50.0%
GTGAATTCACCACACTGGCA+AGG + tig0043916:7224-7243 None:intergenic 50.0%
! TTTACACTGACTGGTGGGTG+GGG + tig0043916:7352-7371 None:intergenic 50.0%
!! GTTTTACACTGACTGGTGGG+TGG + tig0043916:7354-7373 None:intergenic 50.0%
! GATGATCCATCACCGGTTGA+GGG + tig0043916:7805-7824 None:intergenic 50.0%
TCCACTGGATGATCCATCAC+CGG + tig0043916:7812-7831 None:intergenic 50.0%
GTAATCGCAATGTTGTGCGC+TGG - tig0043916:7093-7112 Msa1464140:exon 50.0%
AATTCCTCAACCCCGTCTTC+AGG - tig0043916:7186-7205 Msa1464140:CDS 50.0%
TTGAGCAGCATCCTGAAGAC+GGG + tig0043916:7200-7219 None:intergenic 50.0%
GTGAATTCACCACACTGGCA+AGG + tig0043916:7224-7243 None:intergenic 50.0%
! TTTACACTGACTGGTGGGTG+GGG + tig0043916:7352-7371 None:intergenic 50.0%
!! GTTTTACACTGACTGGTGGG+TGG + tig0043916:7354-7373 None:intergenic 50.0%
! GATGATCCATCACCGGTTGA+GGG + tig0043916:7805-7824 None:intergenic 50.0%
TCCACTGGATGATCCATCAC+CGG + tig0043916:7812-7831 None:intergenic 50.0%
TGAGCAGCATCCTGAAGACG+GGG + tig0043916:7199-7218 None:intergenic 55.0%
CTGCTCAAACCTTGCCAGTG+TGG - tig0043916:7212-7231 Msa1464140:intron 55.0%
TGCCTATGTCAGGTTCTCGG+CGG - tig0043916:7252-7271 Msa1464140:intron 55.0%
GTTTGCACCTTGCAAGCACC+AGG + tig0043916:7330-7349 None:intergenic 55.0%
TTCCTGCTGGTGAGTCTGCT+GGG + tig0043916:7628-7647 None:intergenic 55.0%
GACTCTGCTTCTGTTCCTGC+TGG + tig0043916:7641-7660 None:intergenic 55.0%
! GGATGATCCATCACCGGTTG+AGG + tig0043916:7806-7825 None:intergenic 55.0%
!! ACCGGTGATGGATCATCCAG+TGG - tig0043916:7808-7827 Msa1464140:CDS 55.0%
TGAGCAGCATCCTGAAGACG+GGG + tig0043916:7199-7218 None:intergenic 55.0%
CTGCTCAAACCTTGCCAGTG+TGG - tig0043916:7212-7231 Msa1464140:intron 55.0%
TGCCTATGTCAGGTTCTCGG+CGG - tig0043916:7252-7271 Msa1464140:intron 55.0%
GTTTGCACCTTGCAAGCACC+AGG + tig0043916:7330-7349 None:intergenic 55.0%
TTCCTGCTGGTGAGTCTGCT+GGG + tig0043916:7628-7647 None:intergenic 55.0%
GACTCTGCTTCTGTTCCTGC+TGG + tig0043916:7641-7660 None:intergenic 55.0%
! GGATGATCCATCACCGGTTG+AGG + tig0043916:7806-7825 None:intergenic 55.0%
!! ACCGGTGATGGATCATCCAG+TGG - tig0043916:7808-7827 Msa1464140:CDS 55.0%
GCATCCTGAAGACGGGGTTG+AGG + tig0043916:7193-7212 None:intergenic 60.0%
GCCTATGTCAGGTTCTCGGC+GGG - tig0043916:7253-7272 Msa1464140:intron 60.0%
CCTATGTCAGGTTCTCGGCG+GGG - tig0043916:7254-7273 Msa1464140:intron 60.0%
CTATGTCAGGTTCTCGGCGG+GGG - tig0043916:7255-7274 Msa1464140:intron 60.0%
!! ACTCAGGCTCTAGCCTTGCC+TGG - tig0043916:7309-7328 Msa1464140:intron 60.0%
AGCCTTGCCTGGTGCTTGCA+AGG - tig0043916:7320-7339 Msa1464140:intron 60.0%
CACCTTGCAAGCACCAGGCA+AGG + tig0043916:7325-7344 None:intergenic 60.0%
TCCTGCTGGTGAGTCTGCTG+GGG + tig0043916:7627-7646 None:intergenic 60.0%
GTTCCTGCTGGTGAGTCTGC+TGG + tig0043916:7629-7648 None:intergenic 60.0%
TCCACTCCCTCAACCGGTGA+TGG - tig0043916:7796-7815 Msa1464140:CDS 60.0%
! TCCATCACCGGTTGAGGGAG+TGG + tig0043916:7800-7819 None:intergenic 60.0%
GCATCCTGAAGACGGGGTTG+AGG + tig0043916:7193-7212 None:intergenic 60.0%
GCCTATGTCAGGTTCTCGGC+GGG - tig0043916:7253-7272 Msa1464140:intron 60.0%
CCTATGTCAGGTTCTCGGCG+GGG - tig0043916:7254-7273 Msa1464140:intron 60.0%
CTATGTCAGGTTCTCGGCGG+GGG - tig0043916:7255-7274 Msa1464140:intron 60.0%
!! ACTCAGGCTCTAGCCTTGCC+TGG - tig0043916:7309-7328 Msa1464140:intron 60.0%
AGCCTTGCCTGGTGCTTGCA+AGG - tig0043916:7320-7339 Msa1464140:intron 60.0%
CACCTTGCAAGCACCAGGCA+AGG + tig0043916:7325-7344 None:intergenic 60.0%
TCCTGCTGGTGAGTCTGCTG+GGG + tig0043916:7627-7646 None:intergenic 60.0%
GTTCCTGCTGGTGAGTCTGC+TGG + tig0043916:7629-7648 None:intergenic 60.0%
TCCACTCCCTCAACCGGTGA+TGG - tig0043916:7796-7815 Msa1464140:CDS 60.0%
! TCCATCACCGGTTGAGGGAG+TGG + tig0043916:7800-7819 None:intergenic 60.0%
CCCCGCCGAGAACCTGACAT+AGG + tig0043916:7257-7276 None:intergenic 65.0%
TCCCCAGCAGACTCACCAGC+AGG - tig0043916:7623-7642 Msa1464140:CDS 65.0%
CCCCGCCGAGAACCTGACAT+AGG + tig0043916:7257-7276 None:intergenic 65.0%
TCCCCAGCAGACTCACCAGC+AGG - tig0043916:7623-7642 Msa1464140:CDS 65.0%
! GGCGGGGGTGCATCGTCGCT+GGG - tig0043916:7270-7289 Msa1464140:intron 75.0%
! GGCGGGGGTGCATCGTCGCT+GGG - tig0043916:7270-7289 Msa1464140:intron 75.0%
!! CGGCGGGGGTGCATCGTCGC+TGG - tig0043916:7269-7288 Msa1464140:intron 80.0%
!! CGGCGGGGGTGCATCGTCGC+TGG - tig0043916:7269-7288 Msa1464140:intron 80.0%
Chromosome Type Strat End Strand Name
tig0043916 gene 6859 8142 6859 ID=Msa1464140;Name=Msa1464140
tig0043916 mRNA 6859 8142 6859 ID=Msa1464140-mRNA-1;Parent=Msa1464140;Name=Msa1464140-mRNA-1;_AED=0.02;_eAED=0.02;_QI=195|1|1|1|1|1|3|245|168
tig0043916 exon 6859 7219 6859 ID=Msa1464140-mRNA-1:exon:24314;Parent=Msa1464140-mRNA-1
tig0043916 exon 7321 7383 7321 ID=Msa1464140-mRNA-1:exon:24313;Parent=Msa1464140-mRNA-1
tig0043916 exon 7620 8142 7620 ID=Msa1464140-mRNA-1:exon:24312;Parent=Msa1464140-mRNA-1
tig0043916 five_prime_UTR 7948 8142 7948 ID=Msa1464140-mRNA-1:five_prime_utr;Parent=Msa1464140-mRNA-1
tig0043916 CDS 7620 7947 7620 ID=Msa1464140-mRNA-1:cds;Parent=Msa1464140-mRNA-1
tig0043916 CDS 7321 7383 7321 ID=Msa1464140-mRNA-1:cds;Parent=Msa1464140-mRNA-1
tig0043916 CDS 7104 7219 7104 ID=Msa1464140-mRNA-1:cds;Parent=Msa1464140-mRNA-1
tig0043916 three_prime_UTR 6859 7103 6859 ID=Msa1464140-mRNA-1:three_prime_utr;Parent=Msa1464140-mRNA-1
Gene Sequence

>Msa1464140

ATGGCACACAGCAAAATGAATATGAGTTTGGTTTTGGTTGTAATCGCAATGTTGTGCGCTGGAGCTGCTGCGCAATCGAGTTGTACAAATGTCTTGGTCAGCCTATCACCTTGTCTTAACTATATCACAGGGAATTCCTCAACCCCGTCTTCAGGATGCTGCTCAAACCTTGCCAGTGTGGTGAATTCACAACCACTATGCCTATGTCAGGTTCTCGGCGGGGGTGCATCGTCGCTGGGAATCAGCATCAATCAAACTCAGGCTCTAGCCTTGCCTGGTGCTTGCAAGGTGCAAACCCCACCCACCAGTCAGTGTAAAACTAATAATGCTGCTTCCCCAGCAGACTCACCAGCAGGAACAGAAGCAGAGTCTCCAAACTCAGTTCCATCAGGAACCGGATCAAAATCCACTCCCTCAACCGGTGATGGATCATCCAGTGGAAATTCAATCAAGCTGTCAATTCCGTTGGTTCTTATTTTGGCAGCAGCCTATGCCTCAGTTTTCTGA

Protein sequence

>Msa1464140

MAHSKMNMSLVLVVIAMLCAGAAAQSSCTNVLVSLSPCLNYITGNSSTPSSGCCSNLASVVNSQPLCLCQVLGGGASSLGISINQTQALALPGACKVQTPPTSQCKTNNAASPADSPAGTEAESPNSVPSGTGSKSTPSTGDGSSSGNSIKLSIPLVLILAAAYASVF*