AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0095910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0095910 MtrunA17_Chr5g0398531 79.692 325 16 4 1 275 1 325 5.41e-105 308
Msa0095910 MtrunA17_Chr8g0351651 59.804 204 48 7 1 193 1 181 6.97e-68 213
Msa0095910 MtrunA17_Chr5g0443311 60.000 160 51 2 41 199 5 152 3.04e-58 186
Msa0095910 MtrunA17_Chr1g0168121 72.321 112 31 0 91 202 35 146 4.19e-52 171
Msa0095910 MtrunA17_Chr1g0190051 68.468 111 35 0 92 202 68 178 2.94e-49 165
Msa0095910 MtrunA17_Chr7g0250031 73.958 96 25 0 107 202 66 161 1.36e-48 162
Msa0095910 MtrunA17_Chr4g0054651 57.051 156 58 2 47 202 34 180 1.44e-47 160
Msa0095910 MtrunA17_Chr3g0112131 66.316 95 32 0 108 202 89 183 1.65e-41 145
Msa0095910 MtrunA17_Chr3g0133051 55.238 105 46 1 91 194 67 171 3.10e-37 133
Msa0095910 MtrunA17_Chr5g0435681 46.108 167 84 2 40 202 29 193 7.38e-35 128
Msa0095910 MtrunA17_Chr5g0427311 44.379 169 68 5 30 195 6 151 1.47e-27 106
Msa0095910 MtrunA17_Chr3g0094471 51.042 96 47 0 98 193 55 150 6.31e-27 106
Msa0095910 MtrunA17_Chr1g0186441 45.098 153 72 4 91 233 58 208 2.93e-26 103
Msa0095910 MtrunA17_Chr5g0441851 36.842 133 79 1 97 224 76 208 2.41e-23 95.5
Msa0095910 MtrunA17_Chr5g0397551 44.444 99 52 1 98 193 104 202 7.40e-20 87.4
Msa0095910 MtrunA17_Chr4g0028181 32.680 153 90 3 97 236 50 202 8.66e-18 80.9
Msa0095910 MtrunA17_Chr5g0441441 41.667 96 56 0 98 193 50 145 2.87e-17 78.6
Msa0095910 MtrunA17_Chr1g0161621 34.591 159 85 5 93 234 96 252 1.53e-16 77.8
Msa0095910 MtrunA17_Chr4g0034501 38.542 96 59 0 97 192 33 128 1.83e-16 75.1
Msa0095910 MtrunA17_Chr7g0245841 49.254 67 34 0 128 194 130 196 3.37e-16 77.4
Msa0095910 MtrunA17_Chr4g0028211 36.082 97 62 0 97 193 35 131 4.28e-16 75.9
Msa0095910 MtrunA17_Chr8g0349091 38.053 113 60 2 98 207 125 230 2.82e-15 74.7
Msa0095910 MtrunA17_Chr8g0351761 47.761 67 35 0 128 194 145 211 4.60e-15 74.3
Msa0095910 MtrunA17_Chr8g0386741 44.156 77 43 0 117 193 158 234 5.81e-15 73.9
Msa0095910 MtrunA17_Chr1g0175001 29.605 152 95 2 95 234 82 233 7.16e-15 72.8
Msa0095910 MtrunA17_Chr5g0441901 33.333 99 66 0 97 195 74 172 3.40e-14 70.1
Msa0095910 MtrunA17_Chr1g0188211 38.462 117 53 4 95 194 88 202 5.18e-14 71.2
Msa0095910 MtrunA17_Chr4g0056761 49.254 67 34 0 128 194 147 213 6.70e-14 70.9
Msa0095910 MtrunA17_Chr7g0274821 39.189 74 45 0 120 193 138 211 1.19e-13 70.1
Msa0095910 MtrunA17_Chr4g0054661 36.937 111 58 3 84 190 104 206 4.66e-13 68.2
Msa0095910 MtrunA17_Chr6g0476061 45.714 70 38 0 125 194 130 199 1.26e-12 67.0
Msa0095910 MtrunA17_Chr1g0179461 42.697 89 41 3 128 215 148 227 2.40e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0095910 AT4G22810.1 58.333 216 54 8 1 193 1 203 1.23e-58 190
Msa0095910 AT4G12050.1 59.535 215 64 6 1 193 1 214 4.98e-56 184
Msa0095910 AT2G35270.1 71.028 107 31 0 96 202 76 182 1.49e-53 176
Msa0095910 AT2G45430.1 57.360 197 71 6 1 193 1 188 1.30e-51 171
Msa0095910 AT2G42940.1 69.903 103 31 0 96 198 51 153 9.12e-50 165
Msa0095910 AT4G14465.1 64.286 112 40 0 91 202 60 171 2.79e-48 162
Msa0095910 AT3G60870.1 69.903 103 29 1 91 193 52 152 1.43e-46 157
Msa0095910 AT3G04570.1 65.833 120 33 1 91 202 73 192 1.69e-46 158
Msa0095910 AT4G17800.1 69.792 96 29 0 107 202 91 186 8.66e-45 153
Msa0095910 AT4G35390.1 69.792 96 27 1 98 191 63 158 1.07e-40 142
Msa0095910 AT1G76500.1 62.963 108 31 1 95 193 69 176 1.74e-39 139
Msa0095910 AT5G49700.1 55.340 103 44 1 96 196 54 156 5.01e-37 132
Msa0095910 AT1G20900.1 64.762 105 28 1 98 193 86 190 5.24e-37 133
Msa0095910 AT3G55560.1 61.224 98 38 0 105 202 95 192 2.14e-35 129
Msa0095910 AT1G14490.1 51.042 96 43 2 99 192 6 99 6.75e-28 107
Msa0095910 AT1G14490.2 51.042 96 43 2 99 192 25 118 8.44e-28 107
Msa0095910 AT1G63470.1 46.465 99 50 1 98 193 147 245 4.06e-20 89.4
Msa0095910 AT2G33620.1 40.566 106 56 2 87 192 132 230 3.07e-15 75.1
Msa0095910 AT2G33620.4 40.566 106 56 2 87 192 132 230 3.07e-15 75.1
Msa0095910 AT2G33620.2 40.566 106 56 2 87 192 132 230 3.07e-15 75.1
Msa0095910 AT2G33620.3 40.566 106 56 2 87 192 132 230 3.07e-15 75.1
Msa0095910 AT4G17950.1 40.367 109 61 2 87 193 185 291 8.20e-15 74.3
Msa0095910 AT5G62260.2 44.186 86 45 2 111 194 145 229 1.20e-14 72.8
Msa0095910 AT4G00200.2 48.485 66 34 0 128 193 126 191 1.21e-14 73.2
Msa0095910 AT4G00200.1 48.485 66 34 0 128 193 126 191 1.21e-14 73.2
Msa0095910 AT5G62260.1 44.186 86 45 2 111 194 145 229 1.72e-14 73.2
Msa0095910 AT5G62260.3 44.186 86 45 2 111 194 145 229 1.72e-14 73.2
Msa0095910 AT1G63480.5 38.384 99 58 1 98 193 124 222 1.78e-14 72.8
Msa0095910 AT1G63480.7 38.384 99 58 1 98 193 124 222 1.78e-14 72.8
Msa0095910 AT1G63480.4 38.384 99 58 1 98 193 124 222 1.78e-14 72.8
Msa0095910 AT1G63480.3 38.384 99 58 1 98 193 124 222 1.78e-14 72.8
Msa0095910 AT1G63480.6 38.384 99 58 1 98 193 124 222 1.78e-14 72.8
Msa0095910 AT1G63480.2 38.384 99 58 1 98 193 130 228 1.84e-14 72.8
Msa0095910 AT1G63480.1 38.384 99 58 1 98 193 130 228 1.84e-14 72.8
Msa0095910 AT4G12080.1 46.269 67 36 0 128 194 173 239 2.18e-14 72.8
Msa0095910 AT4G22770.2 41.250 80 40 1 128 207 153 225 5.13e-14 71.2
Msa0095910 AT4G22770.1 41.250 80 40 1 128 207 153 225 5.13e-14 71.2
Msa0095910 AT5G46640.1 39.604 101 59 1 93 193 150 248 5.76e-14 71.6
Msa0095910 AT5G51590.1 38.318 107 60 1 128 228 181 287 1.21e-13 70.9
Msa0095910 AT4G25320.1 46.970 66 35 0 128 193 169 234 3.31e-13 69.3
Msa0095910 AT2G45850.3 38.000 100 57 3 98 193 132 230 1.45e-12 66.6
Msa0095910 AT3G04590.2 40.909 66 39 0 128 193 174 239 1.87e-12 67.4
Msa0095910 AT2G45850.1 38.000 100 57 3 98 193 132 230 2.50e-12 66.6
Msa0095910 AT2G45850.2 38.000 100 57 3 98 193 132 230 2.50e-12 66.6
Msa0095910 AT3G04590.1 40.909 66 39 0 128 193 174 239 4.24e-12 65.5
Msa0095910 AT3G61310.1 33.333 99 63 1 98 193 134 232 8.64e-11 62.0

Find 79 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGCTCCGCCCGCTGCTTC+TGG 0.230880 1_3:-1328971 Msa0095910:intron
GTTGCTGCTGTTGGTGTTGA+TGG 0.289751 1_3:+1329485 None:intergenic
TTAAGATTAGGATTAGAATT+AGG 0.294967 1_3:+1327887 None:intergenic
GGAGCTGTTGTTACACTTCA+TGG 0.313521 1_3:-1329037 Msa0095910:CDS
GTGATAATAATCGGTGGTTT+TGG 0.328875 1_3:+1329226 None:intergenic
AGATGCCTTCTGATAATTTC+TGG 0.330543 1_3:-1327847 Msa0095910:CDS
CCAGAAGCAGCGGGCGGAGC+AGG 0.354965 1_3:+1328971 None:intergenic
GATCCAGCTGGTCTTCCTCT+TGG 0.365755 1_3:+1329259 None:intergenic
TTCGAGATTCTTTCGCTGGC+TGG 0.370912 1_3:-1329010 Msa0095910:CDS
ACCTCCTCCGGATTCTAACT+TGG 0.395394 1_3:+1329318 None:intergenic
AATCTTAATCCTAATCTTCT+CGG 0.405395 1_3:-1327872 Msa0095910:CDS
GAATCCGGAGGAGGTGGTTC+CGG 0.408435 1_3:-1329310 Msa0095910:CDS
GCAGCGGGCGGAGCAGGTGG+TGG 0.424575 1_3:+1328977 None:intergenic
AGAAGATTAGGATTAAGATT+AGG 0.426727 1_3:+1327875 None:intergenic
TCTTCTATTCAACAACTTCA+AGG 0.427876 1_3:-1328010 Msa0095910:CDS
CTAAGGCAACCGGCTTCTCC+TGG 0.438533 1_3:-1329058 Msa0095910:CDS
GGTGGTTCTCCAAGTGGTGG+TGG 0.441214 1_3:-1327977 Msa0095910:CDS
GGTGCTGTTGTTGCTGCTGT+TGG 0.446147 1_3:+1329476 None:intergenic
CTTCCTTTGGAAGATGATGA+TGG 0.447229 1_3:-1328034 Msa0095910:intron
CTTCAAGGTGGTGGTGGTGG+TGG 0.447916 1_3:-1327995 Msa0095910:CDS
TCTGATAATTTCTGGCCAAC+CGG 0.452010 1_3:-1327839 Msa0095910:CDS
CCTCCTCCGGATTCTAACTT+GGG 0.455968 1_3:+1329319 None:intergenic
AGCGGAAGTAGCAGCGGCGG+TGG 0.456861 1_3:-1329400 Msa0095910:CDS
GGCATCTGACCGAGAAGATT+AGG 0.459191 1_3:+1327863 None:intergenic
GCTGTAAAGTGTGGAATTGA+TGG 0.472588 1_3:+1329455 None:intergenic
GGTTCTCCAAGTGGTGGTGG+TGG 0.480891 1_3:-1327974 Msa0095910:CDS
AAGGTTCGAGATTCTTTCGC+TGG 0.482991 1_3:-1329014 Msa0095910:CDS
CAACTTCAAGGTGGTGGTGG+TGG 0.483443 1_3:-1327998 Msa0095910:CDS
AAACGTGACACTAAGGCAAC+CGG 0.494419 1_3:-1329068 Msa0095910:CDS
TTTAGCCCCAAGTTAGAATC+CGG 0.494865 1_3:-1329325 Msa0095910:CDS
TGATGCAAACGCCTCTTTGA+CGG 0.495629 1_3:+1329113 None:intergenic
AGACCAAGAGGAAGACCAGC+TGG 0.509576 1_3:-1329262 Msa0095910:CDS
AGATTAGGATTAGAATTAGG+AGG 0.514675 1_3:+1327890 None:intergenic
CGCCTTGAAAACTCATGTGA+TGG 0.515478 1_3:-1329188 Msa0095910:CDS
CATTGAATCCGTGTCGCCAC+CGG 0.518639 1_3:+1329291 None:intergenic
GCCACCGGAACCACCTCCTC+CGG 0.519443 1_3:+1329306 None:intergenic
GTTTGCATCATGAGTGGGAC+AGG 0.526109 1_3:-1329100 Msa0095910:CDS
CAATATCATCATGATCAATA+CGG 0.533673 1_3:+1327809 None:intergenic
AAGTTAGAATCCGGAGGAGG+TGG 0.540145 1_3:-1329316 Msa0095910:CDS
TGAAGTGTAACAACAGCTCC+AGG 0.541310 1_3:+1329040 None:intergenic
TGATCAATACGGAGAACGAC+CGG 0.541431 1_3:+1327820 None:intergenic
CAACAACTTCAAGGTGGTGG+TGG 0.543583 1_3:-1328001 Msa0095910:CDS
CTGTCACGTGTGATAATAAT+CGG 0.545674 1_3:+1329217 None:intergenic
AGGTGGTTCCGGTGGCGACA+CGG 0.546707 1_3:-1329299 Msa0095910:CDS
TTTGCTAGACGCCGTCAAAG+AGG 0.554223 1_3:-1329124 Msa0095910:CDS
TTAGGATTAGAATTAGGAGG+AGG 0.554265 1_3:+1327893 None:intergenic
TCTCTTGCTGTGTGGAAAGG+TGG 0.554885 1_3:+1329520 None:intergenic
GAAGCAGCGGGCGGAGCAGG+TGG 0.558808 1_3:+1328974 None:intergenic
ATTCAACAACTTCAAGGTGG+TGG 0.559910 1_3:-1328004 Msa0095910:CDS
TCCGGAGGAGGTGGTTCCGG+TGG 0.560060 1_3:-1329307 Msa0095910:CDS
ACAACAGCTCCAGGAGAAGC+CGG 0.562958 1_3:+1329049 None:intergenic
GGTGGTGGTGGTTCTCCAAG+TGG 0.570648 1_3:-1327983 Msa0095910:CDS
GTTGTTGCTGCTGTAAAGTG+TGG 0.572769 1_3:+1329446 None:intergenic
CGGTTACAAACGTGACACTA+AGG 0.574287 1_3:-1329075 Msa0095910:CDS
CTGTTGTTACACTTCATGGA+AGG 0.580978 1_3:-1329033 Msa0095910:CDS
CCCAAGTTAGAATCCGGAGG+AGG 0.587598 1_3:-1329319 Msa0095910:CDS
ATGGTCAAACCAGAAGCAGC+GGG 0.592455 1_3:+1328962 None:intergenic
GAGGCGTTTGCATCATGAGT+GGG 0.596897 1_3:-1329105 Msa0095910:CDS
CATCATGAGTGGGACAGGAA+CGG 0.597354 1_3:-1329095 Msa0095910:CDS
CTTGCTGTGTGGAAAGGTGG+AGG 0.605189 1_3:+1329523 None:intergenic
GGTGGTGGTTCTCCAAGTGG+TGG 0.613666 1_3:-1327980 Msa0095910:CDS
AGATCTCTTGCTGTGTGGAA+AGG 0.616128 1_3:+1329517 None:intergenic
CTCCTCCGGATTCTAACTTG+GGG 0.622134 1_3:+1329320 None:intergenic
CAAAGCGGAAGTAGCAGCGG+CGG 0.624512 1_3:-1329403 Msa0095910:CDS
AGAGGCGTTTGCATCATGAG+TGG 0.639567 1_3:-1329106 Msa0095910:CDS
CAATACGGAGAACGACCGGT+TGG 0.641650 1_3:+1327824 None:intergenic
GTCAAACCAGAAGCAGCGGG+CGG 0.648457 1_3:+1328965 None:intergenic
AGCCCCAAGTTAGAATCCGG+AGG 0.649404 1_3:-1329322 Msa0095910:CDS
TCAATGACAAGAAGACCAAG+AGG 0.650544 1_3:-1329274 Msa0095910:CDS
TATGGTCAAACCAGAAGCAG+CGG 0.651114 1_3:+1328961 None:intergenic
ATGGATCAAATAACATCACA+TGG 0.651930 1_3:-1329556 Msa0095910:CDS
GAACAAAGCGGAAGTAGCAG+CGG 0.653465 1_3:-1329406 Msa0095910:CDS
GTTGGCCAGAAATTATCAGA+AGG 0.660128 1_3:+1327842 None:intergenic
GATGAAGATCTCTTGCTGTG+TGG 0.664521 1_3:+1329512 None:intergenic
TCTATTCAACAACTTCAAGG+TGG 0.668992 1_3:-1328007 Msa0095910:CDS
CTTGAAAACTCATGTGATGG+AGG 0.692082 1_3:-1329185 Msa0095910:CDS
ACAGATCAAGATGAACAAAG+CGG 0.697061 1_3:-1329418 Msa0095910:CDS
TCACGTGTGATAATAATCGG+TGG 0.702591 1_3:+1329220 None:intergenic
CATGTGATGGAGGTTGCAGA+CGG 0.715960 1_3:-1329175 Msa0095910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAACATGTTATAACAAT+AGG + chr1_3:1328687-1328706 None:intergenic 15.0%
!! AACATGTTTATAACAAAAAT+AGG - chr1_3:1328695-1328714 Msa0095910:intron 15.0%
!! TATAAACATGTTATAACAAT+AGG + chr1_3:1328687-1328706 None:intergenic 15.0%
!! AACATGTTTATAACAAAAAT+AGG - chr1_3:1328695-1328714 Msa0095910:intron 15.0%
!!! TTGATCAAGGTTTTAAATAA+CGG - chr1_3:1328492-1328511 Msa0095910:intron 20.0%
!!! TTTGTGCATTTTGATAATAT+AGG + chr1_3:1328760-1328779 None:intergenic 20.0%
!! TTAAGATTAGGATTAGAATT+AGG + chr1_3:1329495-1329514 None:intergenic 20.0%
!!! TTGATCAAGGTTTTAAATAA+CGG - chr1_3:1328492-1328511 Msa0095910:intron 20.0%
!!! TTTGTGCATTTTGATAATAT+AGG + chr1_3:1328760-1328779 None:intergenic 20.0%
!! TTAAGATTAGGATTAGAATT+AGG + chr1_3:1329495-1329514 None:intergenic 20.0%
!!! AAAGCCAAGGTTTTAAAAAA+CGG + chr1_3:1329264-1329283 None:intergenic 25.0%
! AGAAGATTAGGATTAAGATT+AGG + chr1_3:1329507-1329526 None:intergenic 25.0%
! AATCTTAATCCTAATCTTCT+CGG - chr1_3:1329507-1329526 Msa0095910:CDS 25.0%
!!! AAAGCCAAGGTTTTAAAAAA+CGG + chr1_3:1329264-1329283 None:intergenic 25.0%
! AGAAGATTAGGATTAAGATT+AGG + chr1_3:1329507-1329526 None:intergenic 25.0%
! AATCTTAATCCTAATCTTCT+CGG - chr1_3:1329507-1329526 Msa0095910:CDS 25.0%
ATGGATCAAATAACATCACA+TGG - chr1_3:1327823-1327842 Msa0095910:CDS 30.0%
TGGTTTGACCATATATTTAG+CGG - chr1_3:1328428-1328447 Msa0095910:intron 30.0%
ATAAGAATTGTGCAATCTTG+TGG + chr1_3:1328611-1328630 None:intergenic 30.0%
!! CATTTTGATAATATAGGACG+AGG + chr1_3:1328754-1328773 None:intergenic 30.0%
GCAAACAATAAATAACAGAG+TGG - chr1_3:1328843-1328862 Msa0095910:intron 30.0%
GAATCTAGAGAGAGAAAAAT+CGG + chr1_3:1328998-1329017 None:intergenic 30.0%
ATCTTTCAATATTCCAGATC+CGG + chr1_3:1329032-1329051 None:intergenic 30.0%
ATTTCTTTCTCAGCGTTAAA+AGG - chr1_3:1329176-1329195 Msa0095910:CDS 30.0%
TTTCTTTCTCAGCGTTAAAA+GGG - chr1_3:1329177-1329196 Msa0095910:CDS 30.0%
TCTTCTATTCAACAACTTCA+AGG - chr1_3:1329369-1329388 Msa0095910:CDS 30.0%
AGATTAGGATTAGAATTAGG+AGG + chr1_3:1329492-1329511 None:intergenic 30.0%
ATGGATCAAATAACATCACA+TGG - chr1_3:1327823-1327842 Msa0095910:CDS 30.0%
TGGTTTGACCATATATTTAG+CGG - chr1_3:1328428-1328447 Msa0095910:intron 30.0%
ATAAGAATTGTGCAATCTTG+TGG + chr1_3:1328611-1328630 None:intergenic 30.0%
!! CATTTTGATAATATAGGACG+AGG + chr1_3:1328754-1328773 None:intergenic 30.0%
GCAAACAATAAATAACAGAG+TGG - chr1_3:1328843-1328862 Msa0095910:intron 30.0%
GAATCTAGAGAGAGAAAAAT+CGG + chr1_3:1328998-1329017 None:intergenic 30.0%
ATCTTTCAATATTCCAGATC+CGG + chr1_3:1329032-1329051 None:intergenic 30.0%
ATTTCTTTCTCAGCGTTAAA+AGG - chr1_3:1329176-1329195 Msa0095910:CDS 30.0%
TTTCTTTCTCAGCGTTAAAA+GGG - chr1_3:1329177-1329196 Msa0095910:CDS 30.0%
TCTTCTATTCAACAACTTCA+AGG - chr1_3:1329369-1329388 Msa0095910:CDS 30.0%
AGATTAGGATTAGAATTAGG+AGG + chr1_3:1329492-1329511 None:intergenic 30.0%
ACAGATCAAGATGAACAAAG+CGG - chr1_3:1327961-1327980 Msa0095910:CDS 35.0%
!!! TGTTGTTGCTGTTTTCTTCT+CGG + chr1_3:1328020-1328039 None:intergenic 35.0%
! GTGATAATAATCGGTGGTTT+TGG + chr1_3:1328156-1328175 None:intergenic 35.0%
CTGTCACGTGTGATAATAAT+CGG + chr1_3:1328165-1328184 None:intergenic 35.0%
GGTTTGACCATATATTTAGC+GGG - chr1_3:1328429-1328448 Msa0095910:intron 35.0%
!!! AAGGTTTTAAATAACGGTCG+CGG - chr1_3:1328498-1328517 Msa0095910:intron 35.0%
! GATACAAATAACGGTTTTCG+CGG - chr1_3:1328575-1328594 Msa0095910:intron 35.0%
TCTGTATTGTTGTATGTGTG+TGG + chr1_3:1328814-1328833 None:intergenic 35.0%
CATACAACAATACAGAACAC+AGG - chr1_3:1328818-1328837 Msa0095910:intron 35.0%
CTAGATTCACATCTTGATTC+CGG - chr1_3:1329010-1329029 Msa0095910:CDS 35.0%
!!! CTGCTTTTTTGAGCTTGTAA+CGG - chr1_3:1329079-1329098 Msa0095910:CDS 35.0%
TTCTTTCTCAGCGTTAAAAG+GGG - chr1_3:1329178-1329197 Msa0095910:CDS 35.0%
!!! CGTTCCGTTTTTTAAAACCT+TGG - chr1_3:1329257-1329276 Msa0095910:CDS 35.0%
GAAGCAGACATAATAACAAC+AGG + chr1_3:1329300-1329319 None:intergenic 35.0%
TCTATTCAACAACTTCAAGG+TGG - chr1_3:1329372-1329391 Msa0095910:CDS 35.0%
TTAGGATTAGAATTAGGAGG+AGG + chr1_3:1329489-1329508 None:intergenic 35.0%
AGATGCCTTCTGATAATTTC+TGG - chr1_3:1329532-1329551 Msa0095910:CDS 35.0%
ACAGATCAAGATGAACAAAG+CGG - chr1_3:1327961-1327980 Msa0095910:CDS 35.0%
!!! TGTTGTTGCTGTTTTCTTCT+CGG + chr1_3:1328020-1328039 None:intergenic 35.0%
! GTGATAATAATCGGTGGTTT+TGG + chr1_3:1328156-1328175 None:intergenic 35.0%
CTGTCACGTGTGATAATAAT+CGG + chr1_3:1328165-1328184 None:intergenic 35.0%
GGTTTGACCATATATTTAGC+GGG - chr1_3:1328429-1328448 Msa0095910:intron 35.0%
!!! AAGGTTTTAAATAACGGTCG+CGG - chr1_3:1328498-1328517 Msa0095910:intron 35.0%
! GATACAAATAACGGTTTTCG+CGG - chr1_3:1328575-1328594 Msa0095910:intron 35.0%
TCTGTATTGTTGTATGTGTG+TGG + chr1_3:1328814-1328833 None:intergenic 35.0%
CATACAACAATACAGAACAC+AGG - chr1_3:1328818-1328837 Msa0095910:intron 35.0%
CTAGATTCACATCTTGATTC+CGG - chr1_3:1329010-1329029 Msa0095910:CDS 35.0%
!!! CTGCTTTTTTGAGCTTGTAA+CGG - chr1_3:1329079-1329098 Msa0095910:CDS 35.0%
TTCTTTCTCAGCGTTAAAAG+GGG - chr1_3:1329178-1329197 Msa0095910:CDS 35.0%
!!! CGTTCCGTTTTTTAAAACCT+TGG - chr1_3:1329257-1329276 Msa0095910:CDS 35.0%
GAAGCAGACATAATAACAAC+AGG + chr1_3:1329300-1329319 None:intergenic 35.0%
TCTATTCAACAACTTCAAGG+TGG - chr1_3:1329372-1329391 Msa0095910:CDS 35.0%
TTAGGATTAGAATTAGGAGG+AGG + chr1_3:1329489-1329508 None:intergenic 35.0%
AGATGCCTTCTGATAATTTC+TGG - chr1_3:1329532-1329551 Msa0095910:CDS 35.0%
GCTGTAAAGTGTGGAATTGA+TGG + chr1_3:1327927-1327946 None:intergenic 40.0%
!! TGTTTTCTTCTCGGTTTGTG+AGG + chr1_3:1328011-1328030 None:intergenic 40.0%
TTTAGCCCCAAGTTAGAATC+CGG - chr1_3:1328054-1328073 Msa0095910:intron 40.0%
TCAATGACAAGAAGACCAAG+AGG - chr1_3:1328105-1328124 Msa0095910:intron 40.0%
!!! CGGTGGTTTTGGTTTGTTTT+TGG + chr1_3:1328145-1328164 None:intergenic 40.0%
TCACGTGTGATAATAATCGG+TGG + chr1_3:1328162-1328181 None:intergenic 40.0%
! CTCCATCACATGAGTTTTCA+AGG + chr1_3:1328196-1328215 None:intergenic 40.0%
CTTGAAAACTCATGTGATGG+AGG - chr1_3:1328194-1328213 Msa0095910:intron 40.0%
CTGTTGTTACACTTCATGGA+AGG - chr1_3:1328346-1328365 Msa0095910:intron 40.0%
TTGACCATATATTTAGCGGG+CGG - chr1_3:1328432-1328451 Msa0095910:intron 40.0%
! TGTTGTTGGTGCTTTGATCA+AGG - chr1_3:1328479-1328498 Msa0095910:intron 40.0%
! CGTTAAGGTTTTCGCGATTT+CGG - chr1_3:1328536-1328555 Msa0095910:intron 40.0%
GGACGTTGCGATACAAATAA+CGG - chr1_3:1328566-1328585 Msa0095910:intron 40.0%
TTGTTGTATGTGTGTGGTGT+AGG + chr1_3:1328808-1328827 None:intergenic 40.0%
ACAGAGTGGCAAACAAACAA+CGG - chr1_3:1328857-1328876 Msa0095910:intron 40.0%
GCATTACACAACAGCACAAA+CGG - chr1_3:1328890-1328909 Msa0095910:intron 40.0%
CATTACACAACAGCACAAAC+GGG - chr1_3:1328891-1328910 Msa0095910:intron 40.0%
AGCGTTAAAAGGGGCAAAAA+CGG - chr1_3:1329187-1329206 Msa0095910:CDS 40.0%
AAAAGGGGCAAAAACGGTAA+CGG - chr1_3:1329193-1329212 Msa0095910:CDS 40.0%
CAAAAACGGCCGTTACAAAA+CGG + chr1_3:1329231-1329250 None:intergenic 40.0%
!!! TTTTGTAACGGCCGTTTTTG+CGG - chr1_3:1329231-1329250 Msa0095910:CDS 40.0%
TGCTTATGAGAGACTTCCTT+TGG - chr1_3:1329332-1329351 Msa0095910:CDS 40.0%
! CTTCCTTTGGAAGATGATGA+TGG - chr1_3:1329345-1329364 Msa0095910:CDS 40.0%
GAACCATCATCATCTTCCAA+AGG + chr1_3:1329351-1329370 None:intergenic 40.0%
ATTCAACAACTTCAAGGTGG+TGG - chr1_3:1329375-1329394 Msa0095910:CDS 40.0%
! CAGCAACAACAACAGCTTTT+AGG - chr1_3:1329432-1329451 Msa0095910:CDS 40.0%
GTTGGCCAGAAATTATCAGA+AGG + chr1_3:1329540-1329559 None:intergenic 40.0%
!! TCTGATAATTTCTGGCCAAC+CGG - chr1_3:1329540-1329559 Msa0095910:CDS 40.0%
GCTGTAAAGTGTGGAATTGA+TGG + chr1_3:1327927-1327946 None:intergenic 40.0%
!! TGTTTTCTTCTCGGTTTGTG+AGG + chr1_3:1328011-1328030 None:intergenic 40.0%
TTTAGCCCCAAGTTAGAATC+CGG - chr1_3:1328054-1328073 Msa0095910:intron 40.0%
TCAATGACAAGAAGACCAAG+AGG - chr1_3:1328105-1328124 Msa0095910:intron 40.0%
!!! CGGTGGTTTTGGTTTGTTTT+TGG + chr1_3:1328145-1328164 None:intergenic 40.0%
TCACGTGTGATAATAATCGG+TGG + chr1_3:1328162-1328181 None:intergenic 40.0%
! CTCCATCACATGAGTTTTCA+AGG + chr1_3:1328196-1328215 None:intergenic 40.0%
CTTGAAAACTCATGTGATGG+AGG - chr1_3:1328194-1328213 Msa0095910:intron 40.0%
CTGTTGTTACACTTCATGGA+AGG - chr1_3:1328346-1328365 Msa0095910:intron 40.0%
TTGACCATATATTTAGCGGG+CGG - chr1_3:1328432-1328451 Msa0095910:intron 40.0%
! TGTTGTTGGTGCTTTGATCA+AGG - chr1_3:1328479-1328498 Msa0095910:intron 40.0%
! CGTTAAGGTTTTCGCGATTT+CGG - chr1_3:1328536-1328555 Msa0095910:intron 40.0%
GGACGTTGCGATACAAATAA+CGG - chr1_3:1328566-1328585 Msa0095910:intron 40.0%
TTGTTGTATGTGTGTGGTGT+AGG + chr1_3:1328808-1328827 None:intergenic 40.0%
ACAGAGTGGCAAACAAACAA+CGG - chr1_3:1328857-1328876 Msa0095910:intron 40.0%
GCATTACACAACAGCACAAA+CGG - chr1_3:1328890-1328909 Msa0095910:intron 40.0%
CATTACACAACAGCACAAAC+GGG - chr1_3:1328891-1328910 Msa0095910:intron 40.0%
AGCGTTAAAAGGGGCAAAAA+CGG - chr1_3:1329187-1329206 Msa0095910:CDS 40.0%
AAAAGGGGCAAAAACGGTAA+CGG - chr1_3:1329193-1329212 Msa0095910:CDS 40.0%
CAAAAACGGCCGTTACAAAA+CGG + chr1_3:1329231-1329250 None:intergenic 40.0%
!!! TTTTGTAACGGCCGTTTTTG+CGG - chr1_3:1329231-1329250 Msa0095910:CDS 40.0%
TGCTTATGAGAGACTTCCTT+TGG - chr1_3:1329332-1329351 Msa0095910:CDS 40.0%
! CTTCCTTTGGAAGATGATGA+TGG - chr1_3:1329345-1329364 Msa0095910:CDS 40.0%
GAACCATCATCATCTTCCAA+AGG + chr1_3:1329351-1329370 None:intergenic 40.0%
ATTCAACAACTTCAAGGTGG+TGG - chr1_3:1329375-1329394 Msa0095910:CDS 40.0%
! CAGCAACAACAACAGCTTTT+AGG - chr1_3:1329432-1329451 Msa0095910:CDS 40.0%
GTTGGCCAGAAATTATCAGA+AGG + chr1_3:1329540-1329559 None:intergenic 40.0%
!! TCTGATAATTTCTGGCCAAC+CGG - chr1_3:1329540-1329559 Msa0095910:CDS 40.0%
! AGATCTCTTGCTGTGTGGAA+AGG + chr1_3:1327865-1327884 None:intergenic 45.0%
! GATGAAGATCTCTTGCTGTG+TGG + chr1_3:1327870-1327889 None:intergenic 45.0%
GTTGTTGCTGCTGTAAAGTG+TGG + chr1_3:1327936-1327955 None:intergenic 45.0%
!!! GGTTTGTTTTTGGATCCAGC+TGG + chr1_3:1328135-1328154 None:intergenic 45.0%
CGCCTTGAAAACTCATGTGA+TGG - chr1_3:1328191-1328210 Msa0095910:intron 45.0%
TGATGCAAACGCCTCTTTGA+CGG + chr1_3:1328269-1328288 None:intergenic 45.0%
CGGTTACAAACGTGACACTA+AGG - chr1_3:1328304-1328323 Msa0095910:intron 45.0%
AAACGTGACACTAAGGCAAC+CGG - chr1_3:1328311-1328330 Msa0095910:intron 45.0%
TGAAGTGTAACAACAGCTCC+AGG + chr1_3:1328342-1328361 None:intergenic 45.0%
GGAGCTGTTGTTACACTTCA+TGG - chr1_3:1328342-1328361 Msa0095910:intron 45.0%
AAGGTTCGAGATTCTTTCGC+TGG - chr1_3:1328365-1328384 Msa0095910:intron 45.0%
TATGGTCAAACCAGAAGCAG+CGG + chr1_3:1328421-1328440 None:intergenic 45.0%
TTGTCCGCCCGCTAAATATA+TGG + chr1_3:1328439-1328458 None:intergenic 45.0%
! ATATATTTAGCGGGCGGACA+AGG - chr1_3:1328438-1328457 Msa0095910:intron 45.0%
! TATATTTAGCGGGCGGACAA+GGG - chr1_3:1328439-1328458 Msa0095910:intron 45.0%
!! GTTGTTGGTGGAAGTGTTGT+TGG - chr1_3:1328465-1328484 Msa0095910:intron 45.0%
TTAAATAACGGTCGCGGTCA+CGG - chr1_3:1328504-1328523 Msa0095910:intron 45.0%
TTTCGCGATTTCGGCTGTAA+CGG - chr1_3:1328545-1328564 Msa0095910:intron 45.0%
TCACATCTTGATTCCGGATC+TGG - chr1_3:1329016-1329035 Msa0095910:CDS 45.0%
TTTACGGTCGTAACGGTGTT+TGG - chr1_3:1329124-1329143 Msa0095910:CDS 45.0%
GTCGTAACGGTGTTTGGTAA+CGG - chr1_3:1329130-1329149 Msa0095910:CDS 45.0%
!! GTGTTTGGTAACGGTCGTAA+CGG - chr1_3:1329139-1329158 Msa0095910:CDS 45.0%
AAAGGGGCAAAAACGGTAAC+GGG - chr1_3:1329194-1329213 Msa0095910:CDS 45.0%
ACGGAACGTTACCGCAAAAA+CGG + chr1_3:1329245-1329264 None:intergenic 45.0%
!! ACCTTGGCTTTGATTGCTTC+TGG - chr1_3:1329273-1329292 Msa0095910:CDS 45.0%
TCCAGAAGCAATCAAAGCCA+AGG + chr1_3:1329277-1329296 None:intergenic 45.0%
! GGAGGCATAGCTTGAAAAAG+TGG + chr1_3:1329471-1329490 None:intergenic 45.0%
! AGATCTCTTGCTGTGTGGAA+AGG + chr1_3:1327865-1327884 None:intergenic 45.0%
! GATGAAGATCTCTTGCTGTG+TGG + chr1_3:1327870-1327889 None:intergenic 45.0%
GTTGTTGCTGCTGTAAAGTG+TGG + chr1_3:1327936-1327955 None:intergenic 45.0%
!!! GGTTTGTTTTTGGATCCAGC+TGG + chr1_3:1328135-1328154 None:intergenic 45.0%
CGCCTTGAAAACTCATGTGA+TGG - chr1_3:1328191-1328210 Msa0095910:intron 45.0%
TGATGCAAACGCCTCTTTGA+CGG + chr1_3:1328269-1328288 None:intergenic 45.0%
CGGTTACAAACGTGACACTA+AGG - chr1_3:1328304-1328323 Msa0095910:intron 45.0%
AAACGTGACACTAAGGCAAC+CGG - chr1_3:1328311-1328330 Msa0095910:intron 45.0%
TGAAGTGTAACAACAGCTCC+AGG + chr1_3:1328342-1328361 None:intergenic 45.0%
GGAGCTGTTGTTACACTTCA+TGG - chr1_3:1328342-1328361 Msa0095910:intron 45.0%
AAGGTTCGAGATTCTTTCGC+TGG - chr1_3:1328365-1328384 Msa0095910:intron 45.0%
TATGGTCAAACCAGAAGCAG+CGG + chr1_3:1328421-1328440 None:intergenic 45.0%
TTGTCCGCCCGCTAAATATA+TGG + chr1_3:1328439-1328458 None:intergenic 45.0%
! ATATATTTAGCGGGCGGACA+AGG - chr1_3:1328438-1328457 Msa0095910:intron 45.0%
! TATATTTAGCGGGCGGACAA+GGG - chr1_3:1328439-1328458 Msa0095910:intron 45.0%
!! GTTGTTGGTGGAAGTGTTGT+TGG - chr1_3:1328465-1328484 Msa0095910:intron 45.0%
TTAAATAACGGTCGCGGTCA+CGG - chr1_3:1328504-1328523 Msa0095910:intron 45.0%
TTTCGCGATTTCGGCTGTAA+CGG - chr1_3:1328545-1328564 Msa0095910:intron 45.0%
TCACATCTTGATTCCGGATC+TGG - chr1_3:1329016-1329035 Msa0095910:CDS 45.0%
TTTACGGTCGTAACGGTGTT+TGG - chr1_3:1329124-1329143 Msa0095910:CDS 45.0%
GTCGTAACGGTGTTTGGTAA+CGG - chr1_3:1329130-1329149 Msa0095910:CDS 45.0%
!! GTGTTTGGTAACGGTCGTAA+CGG - chr1_3:1329139-1329158 Msa0095910:CDS 45.0%
AAAGGGGCAAAAACGGTAAC+GGG - chr1_3:1329194-1329213 Msa0095910:CDS 45.0%
ACGGAACGTTACCGCAAAAA+CGG + chr1_3:1329245-1329264 None:intergenic 45.0%
!! ACCTTGGCTTTGATTGCTTC+TGG - chr1_3:1329273-1329292 Msa0095910:CDS 45.0%
TCCAGAAGCAATCAAAGCCA+AGG + chr1_3:1329277-1329296 None:intergenic 45.0%
! GGAGGCATAGCTTGAAAAAG+TGG + chr1_3:1329471-1329490 None:intergenic 45.0%
! TCTCTTGCTGTGTGGAAAGG+TGG + chr1_3:1327862-1327881 None:intergenic 50.0%
!! GTTGCTGCTGTTGGTGTTGA+TGG + chr1_3:1327897-1327916 None:intergenic 50.0%
GAACAAAGCGGAAGTAGCAG+CGG - chr1_3:1327973-1327992 Msa0095910:CDS 50.0%
CTCCTCCGGATTCTAACTTG+GGG + chr1_3:1328062-1328081 None:intergenic 50.0%
CCTCCTCCGGATTCTAACTT+GGG + chr1_3:1328063-1328082 None:intergenic 50.0%
ACCTCCTCCGGATTCTAACT+TGG + chr1_3:1328064-1328083 None:intergenic 50.0%
AAGTTAGAATCCGGAGGAGG+TGG - chr1_3:1328063-1328082 Msa0095910:intron 50.0%
! CATGTGATGGAGGTTGCAGA+CGG - chr1_3:1328204-1328223 Msa0095910:intron 50.0%
TTTGCTAGACGCCGTCAAAG+AGG - chr1_3:1328255-1328274 Msa0095910:intron 50.0%
!! AGAGGCGTTTGCATCATGAG+TGG - chr1_3:1328273-1328292 Msa0095910:intron 50.0%
! GAGGCGTTTGCATCATGAGT+GGG - chr1_3:1328274-1328293 Msa0095910:intron 50.0%
GTTTGCATCATGAGTGGGAC+AGG - chr1_3:1328279-1328298 Msa0095910:intron 50.0%
CATCATGAGTGGGACAGGAA+CGG - chr1_3:1328284-1328303 Msa0095910:intron 50.0%
TTCGAGATTCTTTCGCTGGC+TGG - chr1_3:1328369-1328388 Msa0095910:intron 50.0%
ATGGTCAAACCAGAAGCAGC+GGG + chr1_3:1328420-1328439 None:intergenic 50.0%
! GAGCTTGTAACGGCGTTTTG+CGG - chr1_3:1329089-1329108 Msa0095910:CDS 50.0%
ACGACCGTAAAACGCCGTTA+CGG + chr1_3:1329115-1329134 None:intergenic 50.0%
! ACGGCGTTTTACGGTCGTAA+CGG - chr1_3:1329117-1329136 Msa0095910:CDS 50.0%
! CCGTTACAAAACGGTATCGG+CGG + chr1_3:1329222-1329241 None:intergenic 50.0%
! CCGCCGATACCGTTTTGTAA+CGG - chr1_3:1329219-1329238 Msa0095910:CDS 50.0%
CGGCCGTTACAAAACGGTAT+CGG + chr1_3:1329225-1329244 None:intergenic 50.0%
! CAACAACTTCAAGGTGGTGG+TGG - chr1_3:1329378-1329397 Msa0095910:CDS 50.0%
GGCATCTGACCGAGAAGATT+AGG + chr1_3:1329519-1329538 None:intergenic 50.0%
! TCTCTTGCTGTGTGGAAAGG+TGG + chr1_3:1327862-1327881 None:intergenic 50.0%
!! GTTGCTGCTGTTGGTGTTGA+TGG + chr1_3:1327897-1327916 None:intergenic 50.0%
GAACAAAGCGGAAGTAGCAG+CGG - chr1_3:1327973-1327992 Msa0095910:CDS 50.0%
CTCCTCCGGATTCTAACTTG+GGG + chr1_3:1328062-1328081 None:intergenic 50.0%
CCTCCTCCGGATTCTAACTT+GGG + chr1_3:1328063-1328082 None:intergenic 50.0%
ACCTCCTCCGGATTCTAACT+TGG + chr1_3:1328064-1328083 None:intergenic 50.0%
AAGTTAGAATCCGGAGGAGG+TGG - chr1_3:1328063-1328082 Msa0095910:intron 50.0%
! CATGTGATGGAGGTTGCAGA+CGG - chr1_3:1328204-1328223 Msa0095910:intron 50.0%
TTTGCTAGACGCCGTCAAAG+AGG - chr1_3:1328255-1328274 Msa0095910:intron 50.0%
!! AGAGGCGTTTGCATCATGAG+TGG - chr1_3:1328273-1328292 Msa0095910:intron 50.0%
! GAGGCGTTTGCATCATGAGT+GGG - chr1_3:1328274-1328293 Msa0095910:intron 50.0%
GTTTGCATCATGAGTGGGAC+AGG - chr1_3:1328279-1328298 Msa0095910:intron 50.0%
CATCATGAGTGGGACAGGAA+CGG - chr1_3:1328284-1328303 Msa0095910:intron 50.0%
TTCGAGATTCTTTCGCTGGC+TGG - chr1_3:1328369-1328388 Msa0095910:intron 50.0%
ATGGTCAAACCAGAAGCAGC+GGG + chr1_3:1328420-1328439 None:intergenic 50.0%
! GAGCTTGTAACGGCGTTTTG+CGG - chr1_3:1329089-1329108 Msa0095910:CDS 50.0%
ACGACCGTAAAACGCCGTTA+CGG + chr1_3:1329115-1329134 None:intergenic 50.0%
! ACGGCGTTTTACGGTCGTAA+CGG - chr1_3:1329117-1329136 Msa0095910:CDS 50.0%
! CCGTTACAAAACGGTATCGG+CGG + chr1_3:1329222-1329241 None:intergenic 50.0%
! CCGCCGATACCGTTTTGTAA+CGG - chr1_3:1329219-1329238 Msa0095910:CDS 50.0%
CGGCCGTTACAAAACGGTAT+CGG + chr1_3:1329225-1329244 None:intergenic 50.0%
! CAACAACTTCAAGGTGGTGG+TGG - chr1_3:1329378-1329397 Msa0095910:CDS 50.0%
GGCATCTGACCGAGAAGATT+AGG + chr1_3:1329519-1329538 None:intergenic 50.0%
! CTTGCTGTGTGGAAAGGTGG+AGG + chr1_3:1327859-1327878 None:intergenic 55.0%
!! GGTGCTGTTGTTGCTGCTGT+TGG + chr1_3:1327906-1327925 None:intergenic 55.0%
AGCCCCAAGTTAGAATCCGG+AGG - chr1_3:1328057-1328076 Msa0095910:intron 55.0%
CCCAAGTTAGAATCCGGAGG+AGG - chr1_3:1328060-1328079 Msa0095910:intron 55.0%
CATTGAATCCGTGTCGCCAC+CGG + chr1_3:1328091-1328110 None:intergenic 55.0%
AGACCAAGAGGAAGACCAGC+TGG - chr1_3:1328117-1328136 Msa0095910:intron 55.0%
!! GATCCAGCTGGTCTTCCTCT+TGG + chr1_3:1328123-1328142 None:intergenic 55.0%
ACAACAGCTCCAGGAGAAGC+CGG + chr1_3:1328333-1328352 None:intergenic 55.0%
!! CAACTTCAAGGTGGTGGTGG+TGG - chr1_3:1329381-1329400 Msa0095910:CDS 55.0%
TGAACACCACCACCACCACT+TGG + chr1_3:1329414-1329433 None:intergenic 55.0%
CAATACGGAGAACGACCGGT+TGG + chr1_3:1329558-1329577 None:intergenic 55.0%
! CTTGCTGTGTGGAAAGGTGG+AGG + chr1_3:1327859-1327878 None:intergenic 55.0%
!! GGTGCTGTTGTTGCTGCTGT+TGG + chr1_3:1327906-1327925 None:intergenic 55.0%
AGCCCCAAGTTAGAATCCGG+AGG - chr1_3:1328057-1328076 Msa0095910:intron 55.0%
CCCAAGTTAGAATCCGGAGG+AGG - chr1_3:1328060-1328079 Msa0095910:intron 55.0%
CATTGAATCCGTGTCGCCAC+CGG + chr1_3:1328091-1328110 None:intergenic 55.0%
AGACCAAGAGGAAGACCAGC+TGG - chr1_3:1328117-1328136 Msa0095910:intron 55.0%
!! GATCCAGCTGGTCTTCCTCT+TGG + chr1_3:1328123-1328142 None:intergenic 55.0%
ACAACAGCTCCAGGAGAAGC+CGG + chr1_3:1328333-1328352 None:intergenic 55.0%
!! CAACTTCAAGGTGGTGGTGG+TGG - chr1_3:1329381-1329400 Msa0095910:CDS 55.0%
TGAACACCACCACCACCACT+TGG + chr1_3:1329414-1329433 None:intergenic 55.0%
CAATACGGAGAACGACCGGT+TGG + chr1_3:1329558-1329577 None:intergenic 55.0%
CAAAGCGGAAGTAGCAGCGG+CGG - chr1_3:1327976-1327995 Msa0095910:CDS 60.0%
GAATCCGGAGGAGGTGGTTC+CGG - chr1_3:1328069-1328088 Msa0095910:intron 60.0%
! CTAAGGCAACCGGCTTCTCC+TGG - chr1_3:1328321-1328340 Msa0095910:intron 60.0%
GTCAAACCAGAAGCAGCGGG+CGG + chr1_3:1328417-1328436 None:intergenic 60.0%
GGACAAGGGCAGGTTGTTGG+TGG - chr1_3:1328453-1328472 Msa0095910:intron 60.0%
! ACGGCGTTTTGCGGCCGTAA+CGG - chr1_3:1329098-1329117 Msa0095910:CDS 60.0%
! GCGGCCGTAACGGCGTTTTA+CGG - chr1_3:1329108-1329127 Msa0095910:CDS 60.0%
!! CTTCAAGGTGGTGGTGGTGG+TGG - chr1_3:1329384-1329403 Msa0095910:CDS 60.0%
!! GGTGGTGGTGGTTCTCCAAG+TGG - chr1_3:1329396-1329415 Msa0095910:CDS 60.0%
! GGTGGTGGTTCTCCAAGTGG+TGG - chr1_3:1329399-1329418 Msa0095910:CDS 60.0%
GGTGGTTCTCCAAGTGGTGG+TGG - chr1_3:1329402-1329421 Msa0095910:CDS 60.0%
!! GGTTCTCCAAGTGGTGGTGG+TGG - chr1_3:1329405-1329424 Msa0095910:CDS 60.0%
CAAAGCGGAAGTAGCAGCGG+CGG - chr1_3:1327976-1327995 Msa0095910:CDS 60.0%
GAATCCGGAGGAGGTGGTTC+CGG - chr1_3:1328069-1328088 Msa0095910:intron 60.0%
! CTAAGGCAACCGGCTTCTCC+TGG - chr1_3:1328321-1328340 Msa0095910:intron 60.0%
GTCAAACCAGAAGCAGCGGG+CGG + chr1_3:1328417-1328436 None:intergenic 60.0%
GGACAAGGGCAGGTTGTTGG+TGG - chr1_3:1328453-1328472 Msa0095910:intron 60.0%
! ACGGCGTTTTGCGGCCGTAA+CGG - chr1_3:1329098-1329117 Msa0095910:CDS 60.0%
! GCGGCCGTAACGGCGTTTTA+CGG - chr1_3:1329108-1329127 Msa0095910:CDS 60.0%
!! CTTCAAGGTGGTGGTGGTGG+TGG - chr1_3:1329384-1329403 Msa0095910:CDS 60.0%
!! GGTGGTGGTGGTTCTCCAAG+TGG - chr1_3:1329396-1329415 Msa0095910:CDS 60.0%
! GGTGGTGGTTCTCCAAGTGG+TGG - chr1_3:1329399-1329418 Msa0095910:CDS 60.0%
GGTGGTTCTCCAAGTGGTGG+TGG - chr1_3:1329402-1329421 Msa0095910:CDS 60.0%
!! GGTTCTCCAAGTGGTGGTGG+TGG - chr1_3:1329405-1329424 Msa0095910:CDS 60.0%
AGGTGGTTCCGGTGGCGACA+CGG - chr1_3:1328080-1328099 Msa0095910:intron 65.0%
! TTTAGCGGGCGGACAAGGGC+AGG - chr1_3:1328443-1328462 Msa0095910:intron 65.0%
GGCGGACAAGGGCAGGTTGT+TGG - chr1_3:1328450-1328469 Msa0095910:intron 65.0%
TCACGGTCGCGGTCGCGTTA+AGG - chr1_3:1328521-1328540 Msa0095910:intron 65.0%
AGGTGGTTCCGGTGGCGACA+CGG - chr1_3:1328080-1328099 Msa0095910:intron 65.0%
! TTTAGCGGGCGGACAAGGGC+AGG - chr1_3:1328443-1328462 Msa0095910:intron 65.0%
GGCGGACAAGGGCAGGTTGT+TGG - chr1_3:1328450-1328469 Msa0095910:intron 65.0%
TCACGGTCGCGGTCGCGTTA+AGG - chr1_3:1328521-1328540 Msa0095910:intron 65.0%
AGCGGAAGTAGCAGCGGCGG+TGG - chr1_3:1327979-1327998 Msa0095910:CDS 70.0%
TCCGGAGGAGGTGGTTCCGG+TGG - chr1_3:1328072-1328091 Msa0095910:intron 70.0%
GCCACCGGAACCACCTCCTC+CGG + chr1_3:1328076-1328095 None:intergenic 70.0%
AACGGTCGCGGTCACGGTCG+CGG - chr1_3:1328510-1328529 Msa0095910:intron 70.0%
AGCGGAAGTAGCAGCGGCGG+TGG - chr1_3:1327979-1327998 Msa0095910:CDS 70.0%
TCCGGAGGAGGTGGTTCCGG+TGG - chr1_3:1328072-1328091 Msa0095910:intron 70.0%
GCCACCGGAACCACCTCCTC+CGG + chr1_3:1328076-1328095 None:intergenic 70.0%
AACGGTCGCGGTCACGGTCG+CGG - chr1_3:1328510-1328529 Msa0095910:intron 70.0%
GAAGCAGCGGGCGGAGCAGG+TGG + chr1_3:1328408-1328427 None:intergenic 75.0%
CCAGAAGCAGCGGGCGGAGC+AGG + chr1_3:1328411-1328430 None:intergenic 75.0%
CCTGCTCCGCCCGCTGCTTC+TGG - chr1_3:1328408-1328427 Msa0095910:intron 75.0%
GAAGCAGCGGGCGGAGCAGG+TGG + chr1_3:1328408-1328427 None:intergenic 75.0%
CCAGAAGCAGCGGGCGGAGC+AGG + chr1_3:1328411-1328430 None:intergenic 75.0%
CCTGCTCCGCCCGCTGCTTC+TGG - chr1_3:1328408-1328427 Msa0095910:intron 75.0%
! GCAGCGGGCGGAGCAGGTGG+TGG + chr1_3:1328405-1328424 None:intergenic 80.0%
! GCAGCGGGCGGAGCAGGTGG+TGG + chr1_3:1328405-1328424 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 1327823 1329578 1327823 ID=Msa0095910;Name=Msa0095910
chr1_3 mRNA 1327823 1329578 1327823 ID=Msa0095910-mRNA-1;Parent=Msa0095910;Name=Msa0095910-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|2|0|275
chr1_3 exon 1328972 1329578 1328972 ID=Msa0095910-mRNA-1:exon:270;Parent=Msa0095910-mRNA-1
chr1_3 exon 1327823 1328043 1327823 ID=Msa0095910-mRNA-1:exon:269;Parent=Msa0095910-mRNA-1
chr1_3 CDS 1328972 1329578 1328972 ID=Msa0095910-mRNA-1:cds;Parent=Msa0095910-mRNA-1
chr1_3 CDS 1327823 1328043 1327823 ID=Msa0095910-mRNA-1:cds;Parent=Msa0095910-mRNA-1
Gene Sequence

>Msa0095910

ATGGATCAAATAACATCACATGGACATTCACTTCCTCCACCTTTCCACACAGCAAGAGATCTTCATCTTCACCATCAACACCAACAGCAGCAACAACAGCACCATCAATTCCACACTTTACAGCAGCAACAACAAACAACAGATCAAGATGAACAAAGCGGAAGTAGCAGCGGCGGTGGACTCAACCTCACAAACCGAGAAGAAAACAGCAACAACAAGTTCAGCACAGAATTTAGCCCCAAGTTAGAATCCGGAGGAGGTGGTTCCGGTGGCGACACGGATTCAATGACAAGAAGACCAAGAGGAAGACCAGCTGGATCCAAAAACAAACCAAAACCACCGATTATTATCACACGTGACAGCGCAAACGCCTTGAAAACTCATGTGATGGAGGTTGCAGACGGTTGCGACGTTGTTGAAAGTGTCAATAACTTTGCTAGACGCCGTCAAAGAGGCGTTTGCATCATGAGTGGGACAGGAACGGTTACAAACGTGACACTAAGGCAACCGGCTTCTCCTGGAGCTGTTGTTACACTTCATGGAAGGTTCGAGATTCTTTCGCTGGCTGGATCGTTTCTTCCACCACCTGCTCCGCCCGCTGCTTCTGATGATGATGGTTCTTCTATTCAACAACTTCAAGGTGGTGGTGGTGGTGGTTCTCCAAGTGGTGGTGGTGGTGTTCAGCAACAACAACAGCTTTTAGGAGATTCAACTGCTCCACTTTTTCAAGCTATGCCTCCTCCTAATTCTAATCCTAATCTTAATCCTAATCTTCTCGGTCAGATGCCTTCTGATAATTTCTGGCCAACCGGTCGTTCTCCGTATTGA

Protein sequence

>Msa0095910

MDQITSHGHSLPPPFHTARDLHLHHQHQQQQQQHHQFHTLQQQQQTTDQDEQSGSSSGGGLNLTNREENSNNKFSTEFSPKLESGGGGSGGDTDSMTRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDVVESVNNFARRRQRGVCIMSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAASDDDGSSIQQLQGGGGGGSPSGGGGVQQQQQLLGDSTAPLFQAMPPPNSNPNLNPNLLGQMPSDNFWPTGRSPY*