AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0694320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0694320 MtrunA17_Chr4g0045011 94.382 178 5 1 1 178 1 173 8.06e-123 344
Msa0694320 MtrunA17_Chr4g0045001 95.690 116 5 0 64 179 46 161 7.95e-81 236
Msa0694320 MtrunA17_Chr8g0391431 49.660 147 67 1 39 178 15 161 1.91e-43 143
Msa0694320 MtrunA17_Chr5g0402421 56.140 114 47 1 68 178 51 164 1.71e-40 135
Msa0694320 MtrunA17_Chr8g0391441 50.714 140 69 0 39 178 4 143 1.22e-37 127
Msa0694320 MtrunA17_Chr6g0484871 50.435 115 56 1 64 178 13 126 1.50e-31 111
Msa0694320 MtrunA17_Chr1g0187341 56.757 111 47 1 68 178 11 120 8.43e-31 108
Msa0694320 MtrunA17_Chr2g0331531 44.545 110 61 0 69 178 33 142 4.43e-27 100
Msa0694320 MtrunA17_Chr8g0391401 43.860 114 62 2 67 178 7 120 9.36e-25 94.0
Msa0694320 MtrunA17_Chr5g0395991 41.667 108 48 4 82 174 3 110 4.70e-18 76.3
Msa0694320 MtrunA17_Chr4g0021021 31.056 161 69 5 46 174 18 168 1.41e-12 63.5
Msa0694320 MtrunA17_Chr3g0079081 28.662 157 73 3 44 171 44 190 1.85e-12 63.5
Msa0694320 MtrunA17_Chr8g0371431 35.593 118 69 3 58 172 291 404 3.07e-12 63.9
Msa0694320 MtrunA17_Chr5g0405841 35.043 117 69 3 59 172 285 397 6.60e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0694320 AT1G14870.1 55.856 111 49 0 68 178 15 125 1.01e-43 142
Msa0694320 AT5G35525.1 57.658 111 47 0 68 178 15 125 1.77e-43 142
Msa0694320 AT1G14870.2 55.856 111 49 0 69 179 16 126 1.84e-43 141
Msa0694320 AT3G18470.1 54.464 112 51 0 67 178 3 114 5.13e-39 130
Msa0694320 AT1G14880.1 49.550 111 56 0 68 178 14 124 2.63e-36 124
Msa0694320 AT3G18460.1 50.000 110 54 1 69 178 54 162 9.10e-36 123
Msa0694320 AT1G49030.1 45.802 131 68 1 48 178 70 197 1.72e-35 124
Msa0694320 AT1G68610.1 54.098 122 53 2 60 178 10 131 7.56e-33 115
Msa0694320 AT3G18450.1 44.643 112 61 1 67 178 50 160 1.38e-31 112
Msa0694320 AT1G68630.1 47.200 125 60 2 54 178 19 137 1.69e-29 106
Msa0694320 AT1G52200.2 41.481 135 78 1 45 179 30 163 2.09e-28 104
Msa0694320 AT1G52200.1 41.045 134 78 1 45 178 30 162 5.87e-28 103
Msa0694320 AT1G58320.1 51.327 113 51 4 68 178 16 126 2.68e-27 100
Msa0694320 AT2G40935.8 36.905 168 83 5 22 171 2 164 1.54e-24 94.7
Msa0694320 AT2G40935.9 36.905 168 83 5 22 171 2 164 1.54e-24 94.7
Msa0694320 AT2G40935.1 36.905 168 83 5 22 171 2 164 1.54e-24 94.7
Msa0694320 AT2G40935.6 36.905 168 83 5 22 171 2 164 1.54e-24 94.7
Msa0694320 AT2G40935.5 36.905 168 83 5 22 171 2 164 1.54e-24 94.7
Msa0694320 AT2G40935.3 33.929 168 77 6 22 171 2 153 2.46e-17 75.9
Msa0694320 AT2G45010.2 32.143 140 66 2 64 174 11 150 6.72e-17 75.1
Msa0694320 AT2G45010.1 31.034 145 71 2 64 179 57 201 8.78e-17 75.5
Msa0694320 AT2G40935.2 36.000 150 68 6 40 171 1 140 8.24e-16 71.6
Msa0694320 AT2G40935.7 36.000 150 68 6 40 171 1 140 8.24e-16 71.6
Msa0694320 AT2G40935.4 36.000 150 68 6 40 171 1 140 8.24e-16 71.6
Msa0694320 AT5G51400.1 32.143 140 66 3 64 174 57 196 1.18e-14 69.7

Find 51 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGTGATGGAACAATTTA+TGG 0.162988 4_4:-63587392 Msa0694320:CDS
TTCTGCCCATGTGTTACTTT+TGG 0.260194 4_4:-63587865 Msa0694320:CDS
CTTGAACTGGTGCTGATATA+TGG 0.295600 4_4:+63588057 None:intergenic
TCTTGGGATGCCCCTTGAAC+TGG 0.352985 4_4:+63588044 None:intergenic
ACATGATCTGTTTCACTTAC+GGG 0.365548 4_4:+63588186 None:intergenic
GTTGACCAGTGATGTGTTCT+TGG 0.377366 4_4:+63588027 None:intergenic
TGAAACTTGTGCTCTTTGTC+AGG 0.408519 4_4:-63587249 Msa0694320:CDS
CTTGCCAGAGGCACCTTGTA+TGG 0.422756 4_4:-63587294 Msa0694320:CDS
ACACGATCCTTACAGATTCC+AGG 0.423026 4_4:+63587979 None:intergenic
AGAACACATCACTGGTCAAC+TGG 0.424557 4_4:-63588024 Msa0694320:CDS
TGCCGTTGTCTTGATGATCC+TGG 0.428665 4_4:-63587997 Msa0694320:CDS
AACAATTTATGGGGCGCTAC+TGG 0.429042 4_4:-63587381 Msa0694320:CDS
TACATGATCTGTTTCACTTA+CGG 0.430083 4_4:+63588185 None:intergenic
CTGATATATGGAGGAGCATA+AGG 0.431906 4_4:+63588069 None:intergenic
GACACTGGCATGCCATAACT+TGG 0.469680 4_4:+63588096 None:intergenic
TTGACCAGTGATGTGTTCTT+GGG 0.472581 4_4:+63588028 None:intergenic
GGGGCGCTACTGGCTGTGTC+GGG 0.479808 4_4:-63587371 Msa0694320:CDS
TGGGGCGCTACTGGCTGTGT+CGG 0.483383 4_4:-63587372 Msa0694320:CDS
CAGTCCATACAAGGTGCCTC+TGG 0.489012 4_4:+63587290 None:intergenic
GGGAGGATACATATTGTTGT+TGG 0.490981 4_4:+63588206 None:intergenic
GTCCTACAAATGCCAAGTTA+TGG 0.492297 4_4:-63588108 Msa0694320:CDS
TGCCATAACTTGGCATTTGT+AGG 0.492803 4_4:+63588106 None:intergenic
CTTGTGATGGAACAATTTAT+GGG 0.493346 4_4:-63587391 Msa0694320:CDS
CATATATCAGCACCAGTTCA+AGG 0.493929 4_4:-63588056 Msa0694320:CDS
AGGATACATATTGTTGTTGG+TGG 0.512336 4_4:+63588209 None:intergenic
GGAGCATAAGGTTGGGACAC+TGG 0.519387 4_4:+63588081 None:intergenic
GGACATAGCCTTGACCTTGA+GGG 0.520075 4_4:+63588127 None:intergenic
TATATGGAGGAGCATAAGGT+TGG 0.523925 4_4:+63588073 None:intergenic
TGAACTAAGCAGTCCATACA+AGG 0.555249 4_4:+63587281 None:intergenic
TATGCAGATCATAGTAGTCA+TGG 0.562595 4_4:-63588162 Msa0694320:CDS
ATATATCAGCACCAGTTCAA+GGG 0.567137 4_4:-63588055 Msa0694320:CDS
ATATGGAGGAGCATAAGGTT+GGG 0.569101 4_4:+63588074 None:intergenic
GTTATTATCGCTCAAAACTG+AGG 0.570843 4_4:-63587328 Msa0694320:CDS
AGGACATAGCCTTGACCTTG+AGG 0.581870 4_4:+63588126 None:intergenic
GACATAGCCTTGACCTTGAG+GGG 0.583468 4_4:+63588128 None:intergenic
TATGCAGCTTGCACTTGTGA+TGG 0.596135 4_4:-63587404 Msa0694320:intron
ATCAATCCAAAAGTAACACA+TGG 0.609342 4_4:+63587859 None:intergenic
GCATCCCAAGAACACATCAC+TGG 0.621240 4_4:-63588032 Msa0694320:CDS
TATATCAGCACCAGTTCAAG+GGG 0.623123 4_4:-63588054 Msa0694320:CDS
GATCATAGTAGTCATGGCCA+TGG 0.626268 4_4:-63588156 Msa0694320:CDS
TTATTATCGCTCAAAACTGA+GGG 0.630443 4_4:-63587327 Msa0694320:CDS
CGTGGATATGACATGAGCAT+AGG 0.632539 4_4:-63587206 Msa0694320:CDS
CTATGCTCATGTCATATCCA+CGG 0.633181 4_4:+63587207 None:intergenic
TTGTGATGGAACAATTTATG+GGG 0.659307 4_4:-63587390 Msa0694320:CDS
TTCCAGGATCATCAAGACAA+CGG 0.663060 4_4:+63587995 None:intergenic
TGATCTGTTTCACTTACGGG+AGG 0.664833 4_4:+63588189 None:intergenic
ATAGCAGAGATAGTAGACAA+AGG 0.671471 4_4:-63587838 Msa0694320:CDS
ACATAGCCTTGACCTTGAGG+GGG 0.690202 4_4:+63588129 None:intergenic
TCAATCCAAAAGTAACACAT+GGG 0.696087 4_4:+63587860 None:intergenic
GAACTGGTGCTGATATATGG+AGG 0.713639 4_4:+63588060 None:intergenic
GGCACAATATGACTTGCCAG+AGG 0.740534 4_4:-63587306 Msa0694320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATGAAATTAAGTTAA+GGG - chr4_4:63587900-63587919 Msa0694320:intron 10.0%
!! ATTAAATGAAATTAAGTTAA+GGG - chr4_4:63587900-63587919 Msa0694320:intron 10.0%
!!! AATATATGTGTTTTAAAGAA+AGG + chr4_4:63587479-63587498 None:intergenic 15.0%
!!! TCTTTAAAACACATATATTA+TGG - chr4_4:63587480-63587499 Msa0694320:intron 15.0%
!!! TTTTTCTTTTCTAATTGATA+AGG - chr4_4:63587514-63587533 Msa0694320:intron 15.0%
!!! AAAGCTTTTACATAAAATAT+AGG - chr4_4:63587615-63587634 Msa0694320:intron 15.0%
!!! CTTAATTTCATTTAATGTTT+TGG + chr4_4:63587896-63587915 None:intergenic 15.0%
!! CATTAAATGAAATTAAGTTA+AGG - chr4_4:63587899-63587918 Msa0694320:intron 15.0%
!!! CATTATTATTTATCATGTTT+TGG - chr4_4:63587980-63587999 Msa0694320:intron 15.0%
!!! AATATATGTGTTTTAAAGAA+AGG + chr4_4:63587479-63587498 None:intergenic 15.0%
!!! TCTTTAAAACACATATATTA+TGG - chr4_4:63587480-63587499 Msa0694320:intron 15.0%
!!! TTTTTCTTTTCTAATTGATA+AGG - chr4_4:63587514-63587533 Msa0694320:intron 15.0%
!!! AAAGCTTTTACATAAAATAT+AGG - chr4_4:63587615-63587634 Msa0694320:intron 15.0%
!!! CTTAATTTCATTTAATGTTT+TGG + chr4_4:63587896-63587915 None:intergenic 15.0%
!! CATTAAATGAAATTAAGTTA+AGG - chr4_4:63587899-63587918 Msa0694320:intron 15.0%
!!! CATTATTATTTATCATGTTT+TGG - chr4_4:63587980-63587999 Msa0694320:intron 15.0%
!!! ATCTTTTTTTCATGTCATTT+TGG - chr4_4:63587692-63587711 Msa0694320:intron 20.0%
!!! GTTTTTTCTCATGTAATTTT+GGG + chr4_4:63587866-63587885 None:intergenic 20.0%
!!! AGTTTTTTCTCATGTAATTT+TGG + chr4_4:63587867-63587886 None:intergenic 20.0%
!!! ATCTTTTTTTCATGTCATTT+TGG - chr4_4:63587692-63587711 Msa0694320:intron 20.0%
!!! GTTTTTTCTCATGTAATTTT+GGG + chr4_4:63587866-63587885 None:intergenic 20.0%
!!! AGTTTTTTCTCATGTAATTT+TGG + chr4_4:63587867-63587886 None:intergenic 20.0%
!! CTTTTCTAATTGATAAGGTT+TGG - chr4_4:63587519-63587538 Msa0694320:intron 25.0%
!! TTTAATTTCAAGTGACGTTT+AGG - chr4_4:63587663-63587682 Msa0694320:intron 25.0%
! TGACATGAAAAAAAGATACA+AGG + chr4_4:63587689-63587708 None:intergenic 25.0%
!!! ATTTTCAAGCTTCAAATCTA+TGG - chr4_4:63587730-63587749 Msa0694320:intron 25.0%
! CTTGAAAATTCATATGCAAA+CGG - chr4_4:63587831-63587850 Msa0694320:CDS 25.0%
!! CTTTTCTAATTGATAAGGTT+TGG - chr4_4:63587519-63587538 Msa0694320:intron 25.0%
!! TTTAATTTCAAGTGACGTTT+AGG - chr4_4:63587663-63587682 Msa0694320:intron 25.0%
! TGACATGAAAAAAAGATACA+AGG + chr4_4:63587689-63587708 None:intergenic 25.0%
!!! ATTTTCAAGCTTCAAATCTA+TGG - chr4_4:63587730-63587749 Msa0694320:intron 25.0%
! CTTGAAAATTCATATGCAAA+CGG - chr4_4:63587831-63587850 Msa0694320:CDS 25.0%
TACATGATCTGTTTCACTTA+CGG + chr4_4:63587233-63587252 None:intergenic 30.0%
TCAATCCAAAAGTAACACAT+GGG + chr4_4:63587558-63587577 None:intergenic 30.0%
ATCAATCCAAAAGTAACACA+TGG + chr4_4:63587559-63587578 None:intergenic 30.0%
! TTTATTTACCTGTGACTTGT+CGG - chr4_4:63587754-63587773 Msa0694320:intron 30.0%
TCATGTTCATATGCAAACAT+GGG + chr4_4:63587802-63587821 None:intergenic 30.0%
AAATTAAGTTAAGGGACAAC+AGG - chr4_4:63587908-63587927 Msa0694320:intron 30.0%
! ACTTGTGATGGAACAATTTA+TGG - chr4_4:63588023-63588042 Msa0694320:CDS 30.0%
! CTTGTGATGGAACAATTTAT+GGG - chr4_4:63588024-63588043 Msa0694320:CDS 30.0%
! TTGTGATGGAACAATTTATG+GGG - chr4_4:63588025-63588044 Msa0694320:CDS 30.0%
TTATTATCGCTCAAAACTGA+GGG - chr4_4:63588088-63588107 Msa0694320:CDS 30.0%
TACATGATCTGTTTCACTTA+CGG + chr4_4:63587233-63587252 None:intergenic 30.0%
TCAATCCAAAAGTAACACAT+GGG + chr4_4:63587558-63587577 None:intergenic 30.0%
ATCAATCCAAAAGTAACACA+TGG + chr4_4:63587559-63587578 None:intergenic 30.0%
! TTTATTTACCTGTGACTTGT+CGG - chr4_4:63587754-63587773 Msa0694320:intron 30.0%
TCATGTTCATATGCAAACAT+GGG + chr4_4:63587802-63587821 None:intergenic 30.0%
AAATTAAGTTAAGGGACAAC+AGG - chr4_4:63587908-63587927 Msa0694320:intron 30.0%
! ACTTGTGATGGAACAATTTA+TGG - chr4_4:63588023-63588042 Msa0694320:CDS 30.0%
! CTTGTGATGGAACAATTTAT+GGG - chr4_4:63588024-63588043 Msa0694320:CDS 30.0%
! TTGTGATGGAACAATTTATG+GGG - chr4_4:63588025-63588044 Msa0694320:CDS 30.0%
TTATTATCGCTCAAAACTGA+GGG - chr4_4:63588088-63588107 Msa0694320:CDS 30.0%
! AGGATACATATTGTTGTTGG+TGG + chr4_4:63587209-63587228 None:intergenic 35.0%
ACATGATCTGTTTCACTTAC+GGG + chr4_4:63587232-63587251 None:intergenic 35.0%
TATGCAGATCATAGTAGTCA+TGG - chr4_4:63587253-63587272 Msa0694320:CDS 35.0%
ATATATCAGCACCAGTTCAA+GGG - chr4_4:63587360-63587379 Msa0694320:CDS 35.0%
ATAGCAGAGATAGTAGACAA+AGG - chr4_4:63587577-63587596 Msa0694320:intron 35.0%
CTCATGTTCATATGCAAACA+TGG + chr4_4:63587803-63587822 None:intergenic 35.0%
! TCATGTAATTTTGGGCCTTT+TGG + chr4_4:63587858-63587877 None:intergenic 35.0%
GTTATTATCGCTCAAAACTG+AGG - chr4_4:63588087-63588106 Msa0694320:CDS 35.0%
TATAGAGAACTCAAAAACCG+TGG - chr4_4:63588191-63588210 Msa0694320:CDS 35.0%
! AGGATACATATTGTTGTTGG+TGG + chr4_4:63587209-63587228 None:intergenic 35.0%
ACATGATCTGTTTCACTTAC+GGG + chr4_4:63587232-63587251 None:intergenic 35.0%
TATGCAGATCATAGTAGTCA+TGG - chr4_4:63587253-63587272 Msa0694320:CDS 35.0%
ATATATCAGCACCAGTTCAA+GGG - chr4_4:63587360-63587379 Msa0694320:CDS 35.0%
ATAGCAGAGATAGTAGACAA+AGG - chr4_4:63587577-63587596 Msa0694320:intron 35.0%
CTCATGTTCATATGCAAACA+TGG + chr4_4:63587803-63587822 None:intergenic 35.0%
! TCATGTAATTTTGGGCCTTT+TGG + chr4_4:63587858-63587877 None:intergenic 35.0%
GTTATTATCGCTCAAAACTG+AGG - chr4_4:63588087-63588106 Msa0694320:CDS 35.0%
TATAGAGAACTCAAAAACCG+TGG - chr4_4:63588191-63588210 Msa0694320:CDS 35.0%
GGGAGGATACATATTGTTGT+TGG + chr4_4:63587212-63587231 None:intergenic 40.0%
GTCCTACAAATGCCAAGTTA+TGG - chr4_4:63587307-63587326 Msa0694320:CDS 40.0%
TGCCATAACTTGGCATTTGT+AGG + chr4_4:63587312-63587331 None:intergenic 40.0%
! ATATGGAGGAGCATAAGGTT+GGG + chr4_4:63587344-63587363 None:intergenic 40.0%
! TATATGGAGGAGCATAAGGT+TGG + chr4_4:63587345-63587364 None:intergenic 40.0%
! CTGATATATGGAGGAGCATA+AGG + chr4_4:63587349-63587368 None:intergenic 40.0%
!! CTTGAACTGGTGCTGATATA+TGG + chr4_4:63587361-63587380 None:intergenic 40.0%
CATATATCAGCACCAGTTCA+AGG - chr4_4:63587359-63587378 Msa0694320:CDS 40.0%
TATATCAGCACCAGTTCAAG+GGG - chr4_4:63587361-63587380 Msa0694320:CDS 40.0%
TTGACCAGTGATGTGTTCTT+GGG + chr4_4:63587390-63587409 None:intergenic 40.0%
TTCCAGGATCATCAAGACAA+CGG + chr4_4:63587423-63587442 None:intergenic 40.0%
TGATGATCCTGGAATCTGTA+AGG - chr4_4:63587429-63587448 Msa0694320:intron 40.0%
!!! TTCTGCCCATGTGTTACTTT+TGG - chr4_4:63587550-63587569 Msa0694320:intron 40.0%
CTTGTCGGTCTTCAAATCTA+TGG - chr4_4:63587769-63587788 Msa0694320:intron 40.0%
TCATATGCAAACGGACCAAA+AGG - chr4_4:63587840-63587859 Msa0694320:CDS 40.0%
TGAACTAAGCAGTCCATACA+AGG + chr4_4:63588137-63588156 None:intergenic 40.0%
TGAAACTTGTGCTCTTTGTC+AGG - chr4_4:63588166-63588185 Msa0694320:CDS 40.0%
CTATGCTCATGTCATATCCA+CGG + chr4_4:63588211-63588230 None:intergenic 40.0%
GGGAGGATACATATTGTTGT+TGG + chr4_4:63587212-63587231 None:intergenic 40.0%
GTCCTACAAATGCCAAGTTA+TGG - chr4_4:63587307-63587326 Msa0694320:CDS 40.0%
TGCCATAACTTGGCATTTGT+AGG + chr4_4:63587312-63587331 None:intergenic 40.0%
! ATATGGAGGAGCATAAGGTT+GGG + chr4_4:63587344-63587363 None:intergenic 40.0%
! TATATGGAGGAGCATAAGGT+TGG + chr4_4:63587345-63587364 None:intergenic 40.0%
! CTGATATATGGAGGAGCATA+AGG + chr4_4:63587349-63587368 None:intergenic 40.0%
!! CTTGAACTGGTGCTGATATA+TGG + chr4_4:63587361-63587380 None:intergenic 40.0%
CATATATCAGCACCAGTTCA+AGG - chr4_4:63587359-63587378 Msa0694320:CDS 40.0%
TATATCAGCACCAGTTCAAG+GGG - chr4_4:63587361-63587380 Msa0694320:CDS 40.0%
TTGACCAGTGATGTGTTCTT+GGG + chr4_4:63587390-63587409 None:intergenic 40.0%
TTCCAGGATCATCAAGACAA+CGG + chr4_4:63587423-63587442 None:intergenic 40.0%
TGATGATCCTGGAATCTGTA+AGG - chr4_4:63587429-63587448 Msa0694320:intron 40.0%
!!! TTCTGCCCATGTGTTACTTT+TGG - chr4_4:63587550-63587569 Msa0694320:intron 40.0%
CTTGTCGGTCTTCAAATCTA+TGG - chr4_4:63587769-63587788 Msa0694320:intron 40.0%
TCATATGCAAACGGACCAAA+AGG - chr4_4:63587840-63587859 Msa0694320:CDS 40.0%
TGAACTAAGCAGTCCATACA+AGG + chr4_4:63588137-63588156 None:intergenic 40.0%
TGAAACTTGTGCTCTTTGTC+AGG - chr4_4:63588166-63588185 Msa0694320:CDS 40.0%
CTATGCTCATGTCATATCCA+CGG + chr4_4:63588211-63588230 None:intergenic 40.0%
TGATCTGTTTCACTTACGGG+AGG + chr4_4:63587229-63587248 None:intergenic 45.0%
GATCATAGTAGTCATGGCCA+TGG - chr4_4:63587259-63587278 Msa0694320:CDS 45.0%
!! GAACTGGTGCTGATATATGG+AGG + chr4_4:63587358-63587377 None:intergenic 45.0%
GTTGACCAGTGATGTGTTCT+TGG + chr4_4:63587391-63587410 None:intergenic 45.0%
AGAACACATCACTGGTCAAC+TGG - chr4_4:63587391-63587410 Msa0694320:CDS 45.0%
ACACGATCCTTACAGATTCC+AGG + chr4_4:63587439-63587458 None:intergenic 45.0%
TTTGAAGACCGACAAGTCAC+AGG + chr4_4:63587765-63587784 None:intergenic 45.0%
TATGCAGCTTGCACTTGTGA+TGG - chr4_4:63588011-63588030 Msa0694320:CDS 45.0%
! AACAATTTATGGGGCGCTAC+TGG - chr4_4:63588034-63588053 Msa0694320:CDS 45.0%
CGTGGATATGACATGAGCAT+AGG - chr4_4:63588209-63588228 Msa0694320:CDS 45.0%
TGATCTGTTTCACTTACGGG+AGG + chr4_4:63587229-63587248 None:intergenic 45.0%
GATCATAGTAGTCATGGCCA+TGG - chr4_4:63587259-63587278 Msa0694320:CDS 45.0%
!! GAACTGGTGCTGATATATGG+AGG + chr4_4:63587358-63587377 None:intergenic 45.0%
GTTGACCAGTGATGTGTTCT+TGG + chr4_4:63587391-63587410 None:intergenic 45.0%
AGAACACATCACTGGTCAAC+TGG - chr4_4:63587391-63587410 Msa0694320:CDS 45.0%
ACACGATCCTTACAGATTCC+AGG + chr4_4:63587439-63587458 None:intergenic 45.0%
TTTGAAGACCGACAAGTCAC+AGG + chr4_4:63587765-63587784 None:intergenic 45.0%
TATGCAGCTTGCACTTGTGA+TGG - chr4_4:63588011-63588030 Msa0694320:CDS 45.0%
! AACAATTTATGGGGCGCTAC+TGG - chr4_4:63588034-63588053 Msa0694320:CDS 45.0%
CGTGGATATGACATGAGCAT+AGG - chr4_4:63588209-63588228 Msa0694320:CDS 45.0%
! ACATAGCCTTGACCTTGAGG+GGG + chr4_4:63587289-63587308 None:intergenic 50.0%
! GACATAGCCTTGACCTTGAG+GGG + chr4_4:63587290-63587309 None:intergenic 50.0%
! GGACATAGCCTTGACCTTGA+GGG + chr4_4:63587291-63587310 None:intergenic 50.0%
! AGGACATAGCCTTGACCTTG+AGG + chr4_4:63587292-63587311 None:intergenic 50.0%
GACACTGGCATGCCATAACT+TGG + chr4_4:63587322-63587341 None:intergenic 50.0%
GCATCCCAAGAACACATCAC+TGG - chr4_4:63587383-63587402 Msa0694320:CDS 50.0%
! TGCCGTTGTCTTGATGATCC+TGG - chr4_4:63587418-63587437 Msa0694320:intron 50.0%
! GGCACAATATGACTTGCCAG+AGG - chr4_4:63588109-63588128 Msa0694320:CDS 50.0%
! ACATAGCCTTGACCTTGAGG+GGG + chr4_4:63587289-63587308 None:intergenic 50.0%
! GACATAGCCTTGACCTTGAG+GGG + chr4_4:63587290-63587309 None:intergenic 50.0%
! GGACATAGCCTTGACCTTGA+GGG + chr4_4:63587291-63587310 None:intergenic 50.0%
! AGGACATAGCCTTGACCTTG+AGG + chr4_4:63587292-63587311 None:intergenic 50.0%
GACACTGGCATGCCATAACT+TGG + chr4_4:63587322-63587341 None:intergenic 50.0%
GCATCCCAAGAACACATCAC+TGG - chr4_4:63587383-63587402 Msa0694320:CDS 50.0%
! TGCCGTTGTCTTGATGATCC+TGG - chr4_4:63587418-63587437 Msa0694320:intron 50.0%
! GGCACAATATGACTTGCCAG+AGG - chr4_4:63588109-63588128 Msa0694320:CDS 50.0%
GGAGCATAAGGTTGGGACAC+TGG + chr4_4:63587337-63587356 None:intergenic 55.0%
TCTTGGGATGCCCCTTGAAC+TGG + chr4_4:63587374-63587393 None:intergenic 55.0%
!! CTTGCCAGAGGCACCTTGTA+TGG - chr4_4:63588121-63588140 Msa0694320:CDS 55.0%
! CAGTCCATACAAGGTGCCTC+TGG + chr4_4:63588128-63588147 None:intergenic 55.0%
GGAGCATAAGGTTGGGACAC+TGG + chr4_4:63587337-63587356 None:intergenic 55.0%
TCTTGGGATGCCCCTTGAAC+TGG + chr4_4:63587374-63587393 None:intergenic 55.0%
!! CTTGCCAGAGGCACCTTGTA+TGG - chr4_4:63588121-63588140 Msa0694320:CDS 55.0%
! CAGTCCATACAAGGTGCCTC+TGG + chr4_4:63588128-63588147 None:intergenic 55.0%
GACCTTGAGGGGGATGACCA+TGG + chr4_4:63587279-63587298 None:intergenic 60.0%
GGTCATCCCCCTCAAGGTCA+AGG - chr4_4:63587280-63587299 Msa0694320:CDS 60.0%
GACCTTGAGGGGGATGACCA+TGG + chr4_4:63587279-63587298 None:intergenic 60.0%
GGTCATCCCCCTCAAGGTCA+AGG - chr4_4:63587280-63587299 Msa0694320:CDS 60.0%
GGCCATGGTCATCCCCCTCA+AGG - chr4_4:63587274-63587293 Msa0694320:CDS 65.0%
! TGGGGCGCTACTGGCTGTGT+CGG - chr4_4:63588043-63588062 Msa0694320:CDS 65.0%
GGCCATGGTCATCCCCCTCA+AGG - chr4_4:63587274-63587293 Msa0694320:CDS 65.0%
! TGGGGCGCTACTGGCTGTGT+CGG - chr4_4:63588043-63588062 Msa0694320:CDS 65.0%
! GGGGCGCTACTGGCTGTGTC+GGG - chr4_4:63588044-63588063 Msa0694320:CDS 70.0%
! GGGGCGCTACTGGCTGTGTC+GGG - chr4_4:63588044-63588063 Msa0694320:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 63587199 63588238 63587199 ID=Msa0694320;Name=Msa0694320
chr4_4 mRNA 63587199 63588238 63587199 ID=Msa0694320-mRNA-1;Parent=Msa0694320;Name=Msa0694320-mRNA-1;_AED=0.24;_eAED=0.26;_QI=0|0|0|1|1|1|3|0|179
chr4_4 exon 63587992 63588238 63587992 ID=Msa0694320-mRNA-1:exon:17934;Parent=Msa0694320-mRNA-1
chr4_4 exon 63587830 63587901 63587830 ID=Msa0694320-mRNA-1:exon:17933;Parent=Msa0694320-mRNA-1
chr4_4 exon 63587199 63587419 63587199 ID=Msa0694320-mRNA-1:exon:17932;Parent=Msa0694320-mRNA-1
chr4_4 CDS 63587992 63588238 63587992 ID=Msa0694320-mRNA-1:cds;Parent=Msa0694320-mRNA-1
chr4_4 CDS 63587830 63587901 63587830 ID=Msa0694320-mRNA-1:cds;Parent=Msa0694320-mRNA-1
chr4_4 CDS 63587199 63587419 63587199 ID=Msa0694320-mRNA-1:cds;Parent=Msa0694320-mRNA-1
Gene Sequence

>Msa0694320

ATGAATTCCACCAACAACAATATGTATCCTCCCGTAAGTGAAACAGATCATGTATATGCAGATCATAGTAGTCATGGCCATGGTCATCCCCCTCAAGGTCAAGGCTATGTCCTACAAATGCCAAGTTATGGCATGCCAGTGTCCCAACCTTATGCTCCTCCATATATCAGCACCAGTTCAAGGGGCATCCCAAGAACACATCACTGGTCAACTGGTCTTTGCCGTTGTCTTGATGATCCTGGAATCTGTTTGGTCACTTGCTTCTGCCCATGTGTTACTTTTGGATTGATAGCAGAGATAGTAGACAAAGGCAATTCAACTTGCACTTGTGATGGAACAATTTATGGGGCGCTACTGGCTGTGTCGGGACTTGCATGTTTATATTCATGTTATTATCGCTCAAAACTGAGGGCACAATATGACTTGCCAGAGGCACCTTGTATGGACTGCTTAGTTCATTTTTGTTGTGAAACTTGTGCTCTTTGTCAGGAATATAGAGAACTCAAAAACCGTGGATATGACATGAGCATAGGTACCTAA

Protein sequence

>Msa0694320

MNSTNNNMYPPVSETDHVYADHSSHGHGHPPQGQGYVLQMPSYGMPVSQPYAPPYISTSSRGIPRTHHWSTGLCRCLDDPGICLVTCFCPCVTFGLIAEIVDKGNSTCTCDGTIYGALLAVSGLACLYSCYYRSKLRAQYDLPEAPCMDCLVHFCCETCALCQEYRELKNRGYDMSIGT*