AlfalfaGEDB | Msa0694320

M. sativa cultivar zhongmu-4 / Msa0694320

KEGG: -
GO: GO:0008150 GO:0008285 GO:0042127 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0065007
PFAM: PF04749.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694320	XP_003607993.2	94.382	178	5	1	1	178	1	173	8.77e-119	344

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694320	sp\|B6TZ45\|CNR1_MAIZE	65.179	112	39	0	67	178	49	160	4.68e-47	155

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694320	G7JLA3	94.382	178	5	1	1	178	1	173	4.19e-119	344

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa0694320	0.826345	2.854253e-54	-8.615850e-47
Msa0002690	Msa0694320	-0.802983	4.330042e-49	-8.615850e-47
Msa0002700	Msa0694320	-0.804574	2.024013e-49	-8.615850e-47
Msa0004180	Msa0694320	-0.826070	3.319706e-54	-8.615850e-47
Msa0004940	Msa0694320	0.867962	9.293350e-66	-8.615850e-47
Msa0004990	Msa0694320	0.868515	6.165538e-66	-8.615850e-47
Msa0011010	Msa0694320	0.826185	3.115988e-54	-8.615850e-47
Msa0011040	Msa0694320	0.835313	1.804466e-56	-8.615850e-47
Msa0011410	Msa0694320	-0.820555	6.446208e-53	-8.615850e-47
Msa0011440	Msa0694320	-0.800462	1.425093e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694320	MtrunA17_Chr4g0045011	94.382	178	5	1	1	178	1	173	8.06e-123	344
Msa0694320	MtrunA17_Chr4g0045001	95.690	116	5	0	64	179	46	161	7.95e-81	236
Msa0694320	MtrunA17_Chr8g0391431	49.660	147	67	1	39	178	15	161	1.91e-43	143
Msa0694320	MtrunA17_Chr5g0402421	56.140	114	47	1	68	178	51	164	1.71e-40	135
Msa0694320	MtrunA17_Chr8g0391441	50.714	140	69	0	39	178	4	143	1.22e-37	127
Msa0694320	MtrunA17_Chr6g0484871	50.435	115	56	1	64	178	13	126	1.50e-31	111
Msa0694320	MtrunA17_Chr1g0187341	56.757	111	47	1	68	178	11	120	8.43e-31	108
Msa0694320	MtrunA17_Chr2g0331531	44.545	110	61	0	69	178	33	142	4.43e-27	100
Msa0694320	MtrunA17_Chr8g0391401	43.860	114	62	2	67	178	7	120	9.36e-25	94.0
Msa0694320	MtrunA17_Chr5g0395991	41.667	108	48	4	82	174	3	110	4.70e-18	76.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0694320	AT1G14870.1	55.856	111	49	0	68	178	15	125	1.01e-43	142
Msa0694320	AT5G35525.1	57.658	111	47	0	68	178	15	125	1.77e-43	142
Msa0694320	AT1G14870.2	55.856	111	49	0	69	179	16	126	1.84e-43	141
Msa0694320	AT3G18470.1	54.464	112	51	0	67	178	3	114	5.13e-39	130
Msa0694320	AT1G14880.1	49.550	111	56	0	68	178	14	124	2.63e-36	124
Msa0694320	AT3G18460.1	50.000	110	54	1	69	178	54	162	9.10e-36	123
Msa0694320	AT1G49030.1	45.802	131	68	1	48	178	70	197	1.72e-35	124
Msa0694320	AT1G68610.1	54.098	122	53	2	60	178	10	131	7.56e-33	115
Msa0694320	AT3G18450.1	44.643	112	61	1	67	178	50	160	1.38e-31	112
Msa0694320	AT1G68630.1	47.200	125	60	2	54	178	19	137	1.69e-29	106

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Find 51 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATTTATGGGGCGCTAC+TGG	0.429042	4_4:-63587381	Msa0694320:CDS
ACACGATCCTTACAGATTCC+AGG	0.423026	4_4:+63587979	None:intergenic
ACATAGCCTTGACCTTGAGG+GGG	0.690202	4_4:+63588129	None:intergenic
ACATGATCTGTTTCACTTAC+GGG	0.365548	4_4:+63588186	None:intergenic
ACTTGTGATGGAACAATTTA+TGG	0.162988	4_4:-63587392	Msa0694320:CDS
AGAACACATCACTGGTCAAC+TGG	0.424557	4_4:-63588024	Msa0694320:CDS
AGGACATAGCCTTGACCTTG+AGG	0.581870	4_4:+63588126	None:intergenic
AGGATACATATTGTTGTTGG+TGG	0.512336	4_4:+63588209	None:intergenic
ATAGCAGAGATAGTAGACAA+AGG	0.671471	4_4:-63587838	Msa0694320:CDS
ATATATCAGCACCAGTTCAA+GGG	0.567137	4_4:-63588055	Msa0694320:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACATGATCTGTTTCACTTA+CGG	+	chr4_4:63587233-63587252	None:intergenic	30.0%
TCAATCCAAAAGTAACACAT+GGG	+	chr4_4:63587558-63587577	None:intergenic	30.0%
ATCAATCCAAAAGTAACACA+TGG	+	chr4_4:63587559-63587578	None:intergenic	30.0%
TCATGTTCATATGCAAACAT+GGG	+	chr4_4:63587802-63587821	None:intergenic	30.0%
AAATTAAGTTAAGGGACAAC+AGG	-	chr4_4:63587908-63587927	Msa0694320:intron	30.0%
TTATTATCGCTCAAAACTGA+GGG	-	chr4_4:63588088-63588107	Msa0694320:CDS	30.0%
TACATGATCTGTTTCACTTA+CGG	+	chr4_4:63587233-63587252	None:intergenic	30.0%
TCAATCCAAAAGTAACACAT+GGG	+	chr4_4:63587558-63587577	None:intergenic	30.0%
ATCAATCCAAAAGTAACACA+TGG	+	chr4_4:63587559-63587578	None:intergenic	30.0%
TCATGTTCATATGCAAACAT+GGG	+	chr4_4:63587802-63587821	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	63587199	63588238	63587199	ID=Msa0694320;Name=Msa0694320
chr4_4	mRNA	63587199	63588238	63587199	ID=Msa0694320-mRNA-1;Parent=Msa0694320;Name=Msa0694320-mRNA-1;_AED=0.24;_eAED=0.26;_QI=0\|0\|0\|1\|1\|1\|3\|0\|179
chr4_4	exon	63587992	63588238	63587992	ID=Msa0694320-mRNA-1:exon:17934;Parent=Msa0694320-mRNA-1
chr4_4	exon	63587830	63587901	63587830	ID=Msa0694320-mRNA-1:exon:17933;Parent=Msa0694320-mRNA-1
chr4_4	exon	63587199	63587419	63587199	ID=Msa0694320-mRNA-1:exon:17932;Parent=Msa0694320-mRNA-1
chr4_4	CDS	63587992	63588238	63587992	ID=Msa0694320-mRNA-1:cds;Parent=Msa0694320-mRNA-1
chr4_4	CDS	63587830	63587901	63587830	ID=Msa0694320-mRNA-1:cds;Parent=Msa0694320-mRNA-1
chr4_4	CDS	63587199	63587419	63587199	ID=Msa0694320-mRNA-1:cds;Parent=Msa0694320-mRNA-1

Gene Sequence

>Msa0694320

ATGAATTCCACCAACAACAATATGTATCCTCCCGTAAGTGAAACAGATCATGTATATGCAGATCATAGTAGTCATGGCCATGGTCATCCCCCTCAAGGTCAAGGCTATGTCCTACAAATGCCAAGTTATGGCATGCCAGTGTCCCAACCTTATGCTCCTCCATATATCAGCACCAGTTCAAGGGGCATCCCAAGAACACATCACTGGTCAACTGGTCTTTGCCGTTGTCTTGATGATCCTGGAATCTGTTTGGTCACTTGCTTCTGCCCATGTGTTACTTTTGGATTGATAGCAGAGATAGTAGACAAAGGCAATTCAACTTGCACTTGTGATGGAACAATTTATGGGGCGCTACTGGCTGTGTCGGGACTTGCATGTTTATATTCATGTTATTATCGCTCAAAACTGAGGGCACAATATGACTTGCCAGAGGCACCTTGTATGGACTGCTTAGTTCATTTTTGTTGTGAAACTTGTGCTCTTTGTCAGGAATATAGAGAACTCAAAAACCGTGGATATGACATGAGCATAGGTACCTAA

Protein sequence

>Msa0694320

MNSTNNNMYPPVSETDHVYADHSSHGHGHPPQGQGYVLQMPSYGMPVSQPYAPPYISTSSRGIPRTHHWSTGLCRCLDDPGICLVTCFCPCVTFGLIAEIVDKGNSTCTCDGTIYGALLAVSGLACLYSCYYRSKLRAQYDLPEAPCMDCLVHFCCETCALCQEYRELKNRGYDMSIGT*