AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0353010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0353010 MtrunA17_Chr3g0088441 97.925 530 11 0 1 530 1 530 0.0 1080
Msa0353010 MtrunA17_Chr4g0033311 87.571 531 65 1 1 530 1 531 0.0 988
Msa0353010 MtrunA17_Chr4g0033321 71.760 517 142 2 5 521 4 516 0.0 805
Msa0353010 MtrunA17_Chr4g0033401 75.359 487 120 0 35 521 31 517 0.0 801
Msa0353010 MtrunA17_Chr4g0033331 74.089 494 127 1 25 518 27 519 0.0 800
Msa0353010 MtrunA17_Chr2g0329201 73.251 486 130 0 29 514 22 507 0.0 768
Msa0353010 MtrunA17_Chr2g0329191 69.608 510 153 2 6 514 1 509 0.0 755
Msa0353010 MtrunA17_Chr6g0482131 68.824 510 158 1 8 516 5 514 0.0 753
Msa0353010 MtrunA17_Chr6g0482071 67.251 513 166 1 3 515 4 514 0.0 731
Msa0353010 MtrunA17_Chr4g0033341 67.331 502 160 2 14 514 45 543 0.0 726
Msa0353010 MtrunA17_Chr4g0033201 64.844 512 177 1 3 514 4 512 0.0 723
Msa0353010 MtrunA17_Chr4g0033271 66.406 512 166 2 3 514 6 511 0.0 721
Msa0353010 MtrunA17_Chr4g0033191 65.726 496 170 0 22 517 27 522 0.0 720
Msa0353010 MtrunA17_Chr6g0482081 66.154 520 165 5 1 515 1 514 0.0 706
Msa0353010 MtrunA17_Chr2g0329321 67.490 486 132 1 29 514 29 488 0.0 701
Msa0353010 MtrunA17_Chr4g0033261 61.154 520 171 3 1 515 1 494 0.0 655
Msa0353010 MtrunA17_Chr4g0033231 60.521 499 165 3 23 515 22 494 0.0 635
Msa0353010 MtrunA17_Chr5g0430451 61.260 524 167 3 1 514 1 498 0.0 632
Msa0353010 MtrunA17_Chr4g0010501 59.792 480 187 3 35 514 21 494 0.0 606
Msa0353010 MtrunA17_Chr4g0006111 56.592 493 174 7 34 514 61 525 0.0 561
Msa0353010 MtrunA17_Chr3g0087261 54.314 510 224 6 6 514 8 509 0.0 553
Msa0353010 MtrunA17_Chr4g0006131 56.031 514 179 10 15 513 19 500 0.0 548
Msa0353010 MtrunA17_Chr3g0087271 53.033 511 234 4 4 514 6 510 0.0 544
Msa0353010 MtrunA17_Chr4g0043091 52.282 482 221 5 36 513 26 502 0.0 523
Msa0353010 MtrunA17_Chr4g0042171 50.000 488 238 4 32 516 18 502 3.05e-170 491
Msa0353010 MtrunA17_Chr6g0482941 48.228 508 255 6 8 515 14 513 2.79e-165 478
Msa0353010 MtrunA17_Chr2g0301231 57.279 419 142 6 106 514 1 392 2.14e-163 469
Msa0353010 MtrunA17_Chr6g0482951 47.379 515 255 7 1 515 15 513 4.06e-163 473
Msa0353010 MtrunA17_Chr3g0090111 46.901 484 233 7 38 516 19 483 1.32e-157 458
Msa0353010 MtrunA17_Chr3g0090131 46.778 481 239 7 35 513 18 483 3.56e-156 454
Msa0353010 MtrunA17_Chr4g0074561 45.344 494 252 6 43 526 40 525 3.28e-154 451
Msa0353010 MtrunA17_Chr2g0317821 46.973 479 243 6 38 512 32 503 8.05e-152 445
Msa0353010 MtrunA17_Chr2g0317841 46.347 479 246 6 38 512 32 503 8.87e-152 444
Msa0353010 MtrunA17_Chr2g0288071 45.019 522 266 7 6 524 49 552 2.90e-150 441
Msa0353010 MtrunA17_Chr4g0074551 46.316 475 249 5 43 515 55 525 2.95e-148 437
Msa0353010 MtrunA17_Chr2g0288021 44.835 484 261 5 37 518 34 513 9.47e-144 424
Msa0353010 MtrunA17_Chr7g0242691 44.606 482 249 7 37 515 30 496 6.74e-143 421
Msa0353010 MtrunA17_Chr7g0242681 44.835 484 238 9 38 513 38 500 2.17e-141 418
Msa0353010 MtrunA17_Chr4g0006971 43.699 492 259 7 37 525 26 502 4.13e-140 414
Msa0353010 MtrunA17_Chr5g0428831 43.878 490 246 10 32 513 21 489 1.66e-138 410
Msa0353010 MtrunA17_Chr3g0087201 57.958 333 135 2 182 514 17 344 6.04e-138 402
Msa0353010 MtrunA17_Chr1g0195611 42.945 489 251 8 32 513 21 488 3.19e-135 402
Msa0353010 MtrunA17_Chr7g0234111 43.933 478 248 6 39 515 76 534 1.73e-124 375
Msa0353010 MtrunA17_Chr7g0234091 42.946 482 251 7 39 517 76 536 1.74e-123 372
Msa0353010 MtrunA17_Chr5g0418871 55.518 299 130 2 57 355 2 297 1.41e-121 360
Msa0353010 MtrunA17_Chr7g0234131 42.083 480 249 7 39 512 76 532 5.45e-119 361
Msa0353010 MtrunA17_Chr1g0195641 46.803 391 187 8 40 424 29 404 2.88e-116 349
Msa0353010 MtrunA17_Chr7g0230651 45.777 367 183 5 93 459 26 376 3.77e-100 307
Msa0353010 MtrunA17_Chr3g0087191 69.388 147 45 0 35 181 19 165 2.96e-73 230
Msa0353010 MtrunA17_Chr7g0236731 47.009 234 117 2 127 359 28 255 3.99e-60 200
Msa0353010 MtrunA17_Chr7g0227561 40.074 272 124 5 40 308 48 283 1.15e-59 199
Msa0353010 MtrunA17_Chr4g0068871 26.392 413 223 13 102 504 183 524 1.03e-27 117
Msa0353010 MtrunA17_Chr5g0418861 48.889 90 45 1 424 512 1 90 3.30e-24 96.7
Msa0353010 MtrunA17_Chr8g0352881 38.843 121 64 1 249 359 32 152 1.23e-23 97.4
Msa0353010 MtrunA17_Chr8g0352881 48.571 70 35 1 47 116 7 75 1.39e-13 68.6
Msa0353010 MtrunA17_Chr2g0288031 50.847 59 28 1 189 247 3 60 2.33e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0353010 AT2G44480.1 56.735 490 209 2 25 512 20 508 0.0 590
Msa0353010 AT2G44480.3 56.735 490 209 2 25 512 51 539 0.0 590
Msa0353010 AT5G44640.1 54.688 512 220 4 7 517 6 506 0.0 582
Msa0353010 AT5G42260.1 56.262 503 208 4 7 508 6 497 0.0 581
Msa0353010 AT2G44450.1 56.904 478 201 2 38 515 31 503 0.0 574
Msa0353010 AT3G60130.1 55.975 477 204 3 38 513 30 501 0.0 556
Msa0353010 AT2G25630.1 54.832 476 192 4 38 512 30 483 0.0 537
Msa0353010 AT5G24550.1 52.236 492 222 6 38 521 32 518 0.0 531
Msa0353010 AT3G60140.1 49.693 489 242 4 29 514 17 504 0.0 526
Msa0353010 AT1G51470.1 52.381 483 216 7 34 514 41 511 0.0 523
Msa0353010 AT1G47600.1 51.346 483 221 7 34 514 41 511 6.80e-179 513
Msa0353010 AT5G24540.1 51.852 486 229 5 38 519 32 516 3.75e-178 512
Msa0353010 AT1G47600.2 51.346 483 220 7 34 514 41 510 4.52e-178 511
Msa0353010 AT2G44470.3 49.167 480 240 4 38 514 29 507 8.15e-177 511
Msa0353010 AT3G60120.1 51.446 484 224 7 37 514 13 491 1.09e-176 509
Msa0353010 AT2G44490.1 50.830 482 231 5 37 513 13 493 1.98e-176 509
Msa0353010 AT2G44480.2 55.718 411 181 1 106 516 1 410 4.76e-176 502
Msa0353010 AT1G26560.1 49.087 493 231 5 30 512 24 506 1.54e-174 502
Msa0353010 AT5G54570.1 50.728 481 228 4 37 512 29 505 4.50e-172 497
Msa0353010 AT2G44460.1 49.390 492 244 5 34 522 25 514 4.63e-171 496
Msa0353010 AT3G18080.1 50.206 486 234 6 33 517 34 512 8.94e-169 488
Msa0353010 AT5G25980.2 46.869 527 269 9 6 528 19 538 1.03e-167 486
Msa0353010 AT3G60130.2 55.000 420 183 3 95 513 35 449 5.03e-166 479
Msa0353010 AT3G18070.3 46.708 486 243 7 33 517 25 495 1.59e-159 463
Msa0353010 AT3G60130.3 53.810 420 177 4 95 513 35 438 1.32e-158 459
Msa0353010 AT3G18070.1 46.708 486 249 7 33 517 25 501 2.23e-158 461
Msa0353010 AT5G36890.2 48.017 479 236 4 40 517 18 484 4.23e-157 457
Msa0353010 AT5G36890.1 48.017 479 236 4 40 517 18 484 4.38e-157 457
Msa0353010 AT3G09260.1 46.488 484 252 6 38 517 35 515 2.80e-156 456
Msa0353010 AT1G75940.1 47.444 489 245 8 38 517 37 522 3.85e-156 456
Msa0353010 AT3G21370.1 46.914 486 244 8 37 513 32 512 4.33e-156 456
Msa0353010 AT3G03640.1 45.661 484 257 4 36 514 32 514 8.50e-156 455
Msa0353010 AT2G32860.1 44.742 485 264 4 37 518 93 576 1.10e-150 445
Msa0353010 AT5G26000.1 45.279 519 261 11 7 512 3 511 1.71e-150 442
Msa0353010 AT2G44470.1 47.518 423 219 3 38 458 29 450 2.36e-150 438
Msa0353010 AT5G28510.1 45.436 493 257 7 29 512 30 519 1.27e-149 439
Msa0353010 AT5G54570.3 50.235 426 204 3 37 458 29 450 1.33e-149 436
Msa0353010 AT2G32860.2 44.628 484 264 4 37 516 93 576 2.92e-149 441
Msa0353010 AT5G24540.2 50.943 424 204 4 38 458 32 454 3.70e-149 436
Msa0353010 AT1G52400.3 43.487 522 283 9 1 515 2 518 4.63e-149 438
Msa0353010 AT1G52400.1 43.487 522 283 9 1 515 2 518 4.63e-149 438
Msa0353010 AT1G66280.1 47.358 492 242 10 30 512 27 510 1.19e-148 437
Msa0353010 AT1G66270.1 45.759 507 262 9 24 523 21 521 1.27e-148 437
Msa0353010 AT3G60140.2 48.363 397 202 3 29 423 17 412 2.46e-145 426
Msa0353010 AT1G66270.2 45.365 507 262 10 24 523 21 519 4.53e-145 427
Msa0353010 AT1G02850.2 46.170 483 239 9 35 513 21 486 1.52e-144 425
Msa0353010 AT5G25980.3 46.930 456 233 7 6 459 19 467 6.09e-144 422
Msa0353010 AT5G25980.1 46.930 456 233 7 6 459 19 467 6.09e-144 422
Msa0353010 AT1G61820.1 43.763 489 269 6 33 518 25 510 6.78e-142 419
Msa0353010 AT1G61810.1 44.654 477 258 5 43 516 38 511 1.44e-141 419
Msa0353010 AT5G54570.2 50.000 412 197 4 106 512 1 408 2.06e-141 415
Msa0353010 AT4G27830.1 44.099 483 249 7 34 512 19 484 1.14e-140 416
Msa0353010 AT4G21760.2 42.085 518 287 7 3 518 21 527 2.13e-140 416
Msa0353010 AT2G44450.2 54.342 357 158 2 159 515 1 352 2.85e-140 409
Msa0353010 AT1G02850.5 44.269 506 238 10 35 513 21 509 4.53e-140 415
Msa0353010 AT1G02850.4 44.576 507 236 11 35 513 21 510 7.58e-139 412
Msa0353010 AT2G44480.4 59.683 315 124 2 25 337 51 364 1.45e-137 404
Msa0353010 AT1G61810.3 44.731 465 249 5 43 501 38 500 1.84e-136 406
Msa0353010 AT1G60090.2 42.798 486 254 8 38 519 24 489 5.92e-136 404
Msa0353010 AT4G21760.1 41.667 516 282 8 3 518 21 517 2.63e-134 400
Msa0353010 AT1G02850.1 44.720 483 219 10 35 513 21 459 1.07e-133 397
Msa0353010 AT4G27820.1 44.583 480 243 7 37 512 22 482 2.07e-133 397
Msa0353010 AT4G22100.1 42.562 484 256 9 40 519 24 489 6.12e-132 393
Msa0353010 AT1G60090.1 41.224 490 263 9 38 519 24 496 6.79e-132 394
Msa0353010 AT5G26000.2 45.043 464 234 9 7 459 3 456 7.27e-132 391
Msa0353010 AT3G62750.1 42.116 482 247 8 35 512 20 473 2.53e-130 389
Msa0353010 AT3G62750.2 41.199 517 269 9 3 512 11 499 5.19e-130 389
Msa0353010 AT2G44470.2 49.851 335 166 2 38 371 29 362 4.06e-128 380
Msa0353010 AT1G45191.4 41.734 496 259 10 39 530 30 499 3.96e-127 381
Msa0353010 AT1G52400.2 43.319 464 252 8 1 458 2 460 2.08e-126 377
Msa0353010 AT1G45191.2 41.331 496 267 10 39 530 30 505 1.67e-125 377
Msa0353010 AT1G45191.6 41.046 497 272 9 39 530 30 510 1.43e-124 375
Msa0353010 AT1G45191.1 40.631 507 272 10 39 530 30 522 3.51e-122 369
Msa0353010 AT3G62740.1 39.148 493 271 10 24 512 11 478 4.04e-121 365
Msa0353010 AT1G02850.3 45.894 414 189 7 35 423 21 424 8.67e-120 360
Msa0353010 AT1G61810.5 44.282 411 223 5 109 516 4 411 7.35e-117 352
Msa0353010 AT2G44460.2 49.593 369 182 4 157 522 1 368 7.21e-116 350
Msa0353010 AT5G48375.1 42.404 441 186 6 38 477 38 411 6.45e-115 347
Msa0353010 AT1G51490.1 49.857 349 158 7 45 390 27 361 4.48e-113 342
Msa0353010 AT3G62750.4 41.628 430 220 7 35 461 46 447 6.47e-113 343
Msa0353010 AT1G61810.4 44.531 384 208 4 43 423 38 419 2.37e-112 340
Msa0353010 AT2G44480.5 51.325 302 146 1 215 516 6 306 9.20e-112 335
Msa0353010 AT4G27830.2 42.579 411 217 6 106 512 1 396 4.10e-110 334
Msa0353010 AT3G18070.4 48.308 325 162 4 33 357 25 343 2.06e-108 328
Msa0353010 AT3G62750.7 45.455 341 166 5 35 371 20 344 6.17e-106 322
Msa0353010 AT3G62750.8 45.455 341 166 5 35 371 20 344 6.17e-106 322
Msa0353010 AT3G62740.2 39.269 438 238 9 24 458 11 423 1.01e-105 323
Msa0353010 AT3G62750.3 45.161 341 167 4 35 371 46 370 6.85e-105 322
Msa0353010 AT1G45191.5 47.335 319 160 3 39 357 30 340 7.46e-105 320
Msa0353010 AT1G45191.3 47.335 319 160 3 39 357 30 340 8.72e-105 320
Msa0353010 AT1G60270.1 45.533 347 178 5 38 381 24 362 9.14e-105 319
Msa0353010 AT4G27820.2 42.579 411 218 6 106 512 1 397 9.50e-103 315
Msa0353010 AT4G27820.3 42.579 411 218 6 106 512 1 397 9.50e-103 315
Msa0353010 AT3G18070.2 46.364 330 172 4 189 517 99 424 3.03e-102 314
Msa0353010 AT3G18070.2 48.529 68 34 1 33 100 25 91 3.05e-14 75.1
Msa0353010 AT1G61820.3 43.243 370 205 5 152 518 4 371 3.24e-102 312
Msa0353010 AT3G62750.6 39.659 411 221 7 106 512 1 388 3.12e-98 303
Msa0353010 AT3G62750.5 39.659 411 221 7 106 512 1 388 3.12e-98 303
Msa0353010 AT3G18070.7 45.886 316 166 4 203 517 1 312 1.75e-96 295
Msa0353010 AT1G61810.2 51.321 265 127 2 43 307 38 300 4.78e-92 284
Msa0353010 AT1G60270.2 45.126 277 145 4 108 381 3 275 1.92e-77 246
Msa0353010 AT3G18070.5 45.570 237 127 2 190 425 100 335 2.60e-68 224
Msa0353010 AT3G18070.5 48.529 68 34 1 33 100 25 91 1.78e-14 75.5
Msa0353010 AT3G18070.6 44.643 224 122 2 203 425 1 223 6.32e-63 206
Msa0353010 AT5G16580.1 36.093 302 160 8 178 469 21 299 2.21e-50 175
Msa0353010 AT3G06510.2 27.865 445 230 19 101 513 159 544 2.91e-28 119
Msa0353010 AT3G06510.1 26.761 426 225 15 101 513 159 510 1.10e-27 117

Find 111 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATGCAGAACTTTGCTTTA+AGG 0.085798 3_1:+22550162 Msa0353010:CDS
GTTGATTGATTACAGGTTTA+TGG 0.107499 3_1:+22550904 Msa0353010:intron
TATATATACCTGGATATTTA+TGG 0.130865 3_1:-22549189 None:intergenic
GAACTTTGCTTTAAGGAATT+TGG 0.144947 3_1:+22550169 Msa0353010:CDS
CAATTTCATCAACGAGTTAT+TGG 0.173141 3_1:+22549848 Msa0353010:CDS
TTCCCCAAAGGATTTATATT+TGG 0.190969 3_1:+22548846 Msa0353010:CDS
TTGATTTACATCACTGAAAA+TGG 0.211288 3_1:+22551444 Msa0353010:CDS
GAATCACCACCGGTACAATT+TGG 0.249774 3_1:-22550298 None:intergenic
TAGCTACTTGACAGATTCTT+TGG 0.267402 3_1:+22551102 Msa0353010:CDS
AGCGGCTTTCTGATCGGATT+TGG 0.284454 3_1:-22550631 None:intergenic
GAAACTCAAAAGGGTGTAAT+AGG 0.287265 3_1:+22550567 Msa0353010:CDS
TGGGAAACCTATTGGTATTA+AGG 0.294593 3_1:+22551253 Msa0353010:CDS
TGCTCCAAATATAAATCCTT+TGG 0.329647 3_1:-22548850 None:intergenic
CCATGGAGTTACAGTCAAAA+TGG 0.331262 3_1:+22550226 Msa0353010:CDS
ATATATACCTGGATATTTAT+GGG 0.337606 3_1:-22549188 None:intergenic
TTGGTGATAGAGTGAAATAT+TGG 0.342182 3_1:+22550188 Msa0353010:CDS
GTGGTAGAACACCAAGTATA+TGG 0.346943 3_1:+22549155 Msa0353010:CDS
TTTATTTATGATTAGTTTGA+AGG 0.349443 3_1:+22549118 Msa0353010:intron
GCTCCAAATATAAATCCTTT+GGG 0.358972 3_1:-22548849 None:intergenic
GCACAAGTGCAAAAGCAATT+AGG 0.372097 3_1:-22548743 None:intergenic
TGGTAGTGCGTGACAATATA+GGG 0.377896 3_1:-22550331 None:intergenic
CACCAGGTCGTTGTTCTAGT+TGG 0.391277 3_1:+22550269 Msa0353010:CDS
ATCAACGAGTTATTGGCTAA+TGG 0.391833 3_1:+22549855 Msa0353010:CDS
TCGGGTTATTCCGTGAGATT+TGG 0.395849 3_1:+22551850 Msa0353010:CDS
CTTTGTCTTGTACACATTGA+CGG 0.398620 3_1:-22550374 None:intergenic
TTGGTAGTGCGTGACAATAT+AGG 0.399199 3_1:-22550332 None:intergenic
CTTGTACACATTGACGGCTT+CGG 0.403989 3_1:-22550368 None:intergenic
AAGTGTCCATGAGCGATTCT+TGG 0.413109 3_1:-22551624 None:intergenic
ACATTTGTGGATTACAAGAA+TGG 0.418146 3_1:+22551877 Msa0353010:CDS
TGACTTACCTTAATACCAAT+AGG 0.418238 3_1:-22551260 None:intergenic
GATAATATAGATGACGATAA+TGG 0.420645 3_1:-22551660 None:intergenic
GAATAACCTTGGTAGCTAAC+TGG 0.426224 3_1:+22550589 Msa0353010:CDS
AGCAAAGTTCTGCATAGTCT+TGG 0.429056 3_1:-22550156 None:intergenic
TGGTGATAGAGTGAAATATT+GGG 0.433375 3_1:+22550189 Msa0353010:CDS
TAATTGCAGTTGAGCGAAAT+GGG 0.439736 3_1:+22551234 Msa0353010:intron
GGATAATCTCCTGTTGTAAG+TGG 0.441211 3_1:-22550929 None:intergenic
TTAATTGCAGTTGAGCGAAA+TGG 0.450417 3_1:+22551233 Msa0353010:intron
TTTATGGATCCACTTACAAC+AGG 0.454541 3_1:+22550920 Msa0353010:CDS
ACATGTGCAGGAAACTCAAA+AGG 0.455499 3_1:+22550557 Msa0353010:intron
GAGCGAAATGGGAAACCTAT+TGG 0.456595 3_1:+22551245 Msa0353010:CDS
TTATGCAGATTGCTTCTGAT+TGG 0.460654 3_1:+22551355 Msa0353010:intron
TTTCAGTGATGTAAATCAAC+GGG 0.461224 3_1:-22551440 None:intergenic
AGTCAAAATGGCTATGCAAA+TGG 0.462239 3_1:+22550238 Msa0353010:CDS
AAAGGATTTATATTTGGAGC+AGG 0.463085 3_1:+22548852 Msa0353010:CDS
GGTCTAGCATTGCTTAGAAA+TGG 0.463232 3_1:-22551079 None:intergenic
CAAGCTTTAGAAGATGAGTA+TGG 0.466616 3_1:+22550010 Msa0353010:CDS
TGTGTACAAGACAAAGTATC+AGG 0.470745 3_1:+22550381 Msa0353010:CDS
AAATGTCAATTGCATTGAAA+CGG 0.472883 3_1:+22548776 Msa0353010:CDS
CATACAGATTCTCCTTATCC+TGG 0.474985 3_1:+22549660 Msa0353010:CDS
AAAAGCATGAGATCCCTTGT+TGG 0.489756 3_1:+22550953 Msa0353010:CDS
TCCATAATAGAAGGAAAGCT+TGG 0.491667 3_1:+22549789 Msa0353010:intron
GAGATTTGGAATGACATTTG+TGG 0.496815 3_1:+22551864 Msa0353010:CDS
TTTGAAGGTGCAGCAAATGA+AGG 0.505148 3_1:+22549133 Msa0353010:CDS
TCTTTCAGCGGCTTTCTGAT+CGG 0.508451 3_1:-22550637 None:intergenic
TACTCATCTTCTAAAGCTTG+TGG 0.509391 3_1:-22550007 None:intergenic
ACGTCCAAGGATATTACATA+TGG 0.509867 3_1:+22551800 Msa0353010:CDS
CAAAAGCAATTAGGCAGAGA+AGG 0.515479 3_1:-22548734 None:intergenic
ACTCATCTTCTAAAGCTTGT+GGG 0.518122 3_1:-22550006 None:intergenic
AATCATCAAGGATATGAACT+TGG 0.522377 3_1:+22549634 Msa0353010:CDS
TGGTAGAACACCAAGTATAT+GGG 0.523979 3_1:+22549156 Msa0353010:CDS
AGGACCATATGTAATATCCT+TGG 0.529150 3_1:-22551804 None:intergenic
CTTCGGCATGAGCTAGAAGT+TGG 0.529575 3_1:-22550351 None:intergenic
GTAATTAATTACCTGGTATG+AGG 0.530752 3_1:-22548880 None:intergenic
ATTTGGAATCTGAGAGTGGC+AGG 0.533648 3_1:-22550614 None:intergenic
CAATATTCTAGACCAGGATA+AGG 0.535004 3_1:-22549672 None:intergenic
AGCAGGATCTTCCTCATACC+AGG 0.542249 3_1:+22548869 Msa0353010:CDS
TGATCTTCTGTTATATACAA+AGG 0.542723 3_1:+22551404 Msa0353010:CDS
AAAGAATCTGTCAAGTAGCT+AGG 0.542781 3_1:-22551100 None:intergenic
ACTTTCACCCATAAATATCC+AGG 0.543624 3_1:+22549181 Msa0353010:CDS
AGAGCTGTCGACTTCATGTA+TGG 0.545221 3_1:+22550657 Msa0353010:CDS
AATTCAATGCAAAACAAGCT+AGG 0.547970 3_1:+22550990 Msa0353010:CDS
TTGGTAATCTTGCTCCAACA+AGG 0.556284 3_1:-22550967 None:intergenic
AAACAAGCTAGGCTACTCAT+TGG 0.560590 3_1:+22551001 Msa0353010:CDS
TGGTAATCTTGCTCCAACAA+GGG 0.565723 3_1:-22550966 None:intergenic
GCAAATGGACGAATGGCACC+AGG 0.570578 3_1:+22550253 Msa0353010:CDS
GTAGTTGTGATATGAATCAA+TGG 0.572496 3_1:-22549353 None:intergenic
CTGTCGACTTCATGTATGGA+TGG 0.573667 3_1:+22550661 Msa0353010:CDS
TGGTTGAATCCAAATTGTAC+CGG 0.574157 3_1:+22550289 Msa0353010:CDS
GGAAGATGTTAGAATCATCA+AGG 0.575017 3_1:+22549622 Msa0353010:intron
ATCGGTCCAAGAATCGCTCA+TGG 0.576413 3_1:+22551618 Msa0353010:CDS
AATGAAGCAACATCAAGAAG+TGG 0.577727 3_1:-22548810 None:intergenic
AGTAGAAACAGTTTCCCCAA+AGG 0.582354 3_1:+22548834 Msa0353010:CDS
GTGAAAGTATCCCATATACT+TGG 0.583793 3_1:-22549166 None:intergenic
TTGGAAACTCACACTATGAG+AGG 0.585684 3_1:-22550046 None:intergenic
ATAATAGAAGGAAAGCTTGG+TGG 0.588790 3_1:+22549792 Msa0353010:intron
TGGCTATGCAAATGGACGAA+TGG 0.589653 3_1:+22550246 Msa0353010:CDS
ATACAGTGATCCTACACTAT+CGG 0.591032 3_1:+22551600 Msa0353010:CDS
GCTTAGAAATGGTGCATCTG+AGG 0.591574 3_1:-22551068 None:intergenic
ATAGAAGGAAAGCTTGGTGG+TGG 0.595097 3_1:+22549795 Msa0353010:intron
AAATGTCATTCCAAATCTCA+CGG 0.598464 3_1:-22551860 None:intergenic
CTCCAAATATAAATCCTTTG+GGG 0.598486 3_1:-22548848 None:intergenic
ACGAGAAACTTTCTGCGCTG+TGG 0.609827 3_1:+22551911 Msa0353010:CDS
GGTGGTGGTATAAATCAAGA+AGG 0.611882 3_1:+22549810 Msa0353010:CDS
CAGGTACCAGTTAGCTACCA+AGG 0.618729 3_1:-22550595 None:intergenic
ACTTGGCAATATTCTAGACC+AGG 0.618905 3_1:-22549678 None:intergenic
AGAAGATCACGAATTCCTCT+CGG 0.618923 3_1:-22551390 None:intergenic
GGGTTACTTTGAATGAACCA+TGG 0.621045 3_1:+22550209 Msa0353010:CDS
GCTTTAGAAGATGAGTATGG+TGG 0.623267 3_1:+22550013 Msa0353010:CDS
AGGCAAGGTGCAAACGTCCA+AGG 0.624303 3_1:+22551787 Msa0353010:intron
CCATTCAAAATTGTCGAACA+AGG 0.625604 3_1:-22551824 None:intergenic
TGGTTGTATGTTTATCCGAG+AGG 0.627108 3_1:+22551375 Msa0353010:CDS
CATGTGCAGGAAACTCAAAA+GGG 0.627665 3_1:+22550558 Msa0353010:intron
GGGTGTAATAGGAATAACCT+TGG 0.642396 3_1:+22550578 Msa0353010:CDS
CTCAATCGCAGAATCACCAC+CGG 0.647712 3_1:-22550308 None:intergenic
GAAGTCGACAGCTCTTTCAG+CGG 0.650445 3_1:-22550649 None:intergenic
TGATTCATATCACAACTACA+AGG 0.653125 3_1:+22549357 Msa0353010:CDS
GATTCTTGGACCGATAGTGT+AGG 0.670328 3_1:-22551610 None:intergenic
GAAGGTGCAGCAAATGAAGG+TGG 0.681013 3_1:+22549136 Msa0353010:CDS
TCGGATTTGGAATCTGAGAG+TGG 0.684688 3_1:-22550618 None:intergenic
TTGAATCCAAATTGTACCGG+TGG 0.691051 3_1:+22550292 Msa0353010:CDS
AACCAACTAGAACAACGACC+TGG 0.698527 3_1:-22550271 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTTTATATATACC+TGG - chr3_1:22549202-22549221 None:intergenic 10.0%
!!! AATAAATTGTCAATAATTTT+AGG + chr3_1:22549947-22549966 Msa0353010:intron 10.0%
!!! TTTATTTATGATTAGTTTGA+AGG + chr3_1:22549118-22549137 Msa0353010:intron 15.0%
!!! TTGTTGTTCATATATATTAT+AGG + chr3_1:22549601-22549620 Msa0353010:intron 15.0%
!! TTATCAATATTAAACTTACT+TGG - chr3_1:22549698-22549717 None:intergenic 15.0%
!! ATGTACAAAAGATAAAAATA+TGG + chr3_1:22550769-22550788 Msa0353010:intron 15.0%
!!! TAAAAATATGGATTAACATT+AGG + chr3_1:22550781-22550800 Msa0353010:intron 15.0%
!!! AAAAATATGGATTAACATTA+GGG + chr3_1:22550782-22550801 Msa0353010:intron 15.0%
!!! ATCAACTTTTGATTAATATT+TGG - chr3_1:22550890-22550909 None:intergenic 15.0%
!! ACTAAATGTAATATAAAGTT+AGG - chr3_1:22551478-22551497 None:intergenic 15.0%
!!! CTCATTTTAAATCATCAAAT+TGG - chr3_1:22548907-22548926 None:intergenic 20.0%
!! ATATATACCTGGATATTTAT+GGG - chr3_1:22549191-22549210 None:intergenic 20.0%
!! TATATATACCTGGATATTTA+TGG - chr3_1:22549192-22549211 None:intergenic 20.0%
!!! GTAATATTGATTTTGTGTTT+AGG + chr3_1:22549557-22549576 Msa0353010:intron 20.0%
!! AACTATTTATCCATAATAGA+AGG + chr3_1:22549780-22549799 Msa0353010:intron 20.0%
!! ATCATCAAGAACAAAATATA+AGG - chr3_1:22549924-22549943 None:intergenic 20.0%
!!! AATTTTAGGTATAAAACCAT+TGG + chr3_1:22549961-22549980 Msa0353010:intron 20.0%
!!! AACATTAAGCTATATTGTTT+TGG - chr3_1:22550068-22550087 None:intergenic 20.0%
!! TTCTATTTAAAGACACTAAA+CGG + chr3_1:22550506-22550525 Msa0353010:intron 20.0%
!! AAATAAATCAAAAAGAGTGA+GGG - chr3_1:22550702-22550721 None:intergenic 20.0%
!! AAAATAAATCAAAAAGAGTG+AGG - chr3_1:22550703-22550722 None:intergenic 20.0%
!! TAAGGTTTATAAACATTTCT+AGG + chr3_1:22550825-22550844 Msa0353010:intron 20.0%
!!! GTCATATATTTTTTGTGATA+TGG + chr3_1:22550847-22550866 Msa0353010:intron 20.0%
!!! ATTGGTTCATTTGATTTTAT+TGG + chr3_1:22551019-22551038 Msa0353010:CDS 20.0%
! AAATGTCAATTGCATTGAAA+CGG + chr3_1:22548776-22548795 Msa0353010:CDS 25.0%
! AATTGGAGTAATTAATTACC+TGG - chr3_1:22548890-22548909 None:intergenic 25.0%
! TGCATTACACTTATATCTAA+GGG + chr3_1:22549477-22549496 Msa0353010:intron 25.0%
!!! TGGAAATCTTTTCTGAAAAA+TGG - chr3_1:22550139-22550158 None:intergenic 25.0%
! TTACTCATCGATACTTTATA+TGG - chr3_1:22550457-22550476 None:intergenic 25.0%
! AGTAAATGATTTATCGACAA+CGG + chr3_1:22550472-22550491 Msa0353010:intron 25.0%
! AATAAATCAAAAAGAGTGAG+GGG - chr3_1:22550701-22550720 None:intergenic 25.0%
!!! TTGTTATCATTGGTTTTCTA+AGG + chr3_1:22550807-22550826 Msa0353010:intron 25.0%
! GATATGGTTAAATGAATTTG+TGG + chr3_1:22550863-22550882 Msa0353010:intron 25.0%
!! ATCAAAAGTTGATTGATTAC+AGG + chr3_1:22550897-22550916 Msa0353010:intron 25.0%
!! TTGCATATCTTTTCTATTTG+TGG + chr3_1:22551210-22551229 Msa0353010:intron 25.0%
! TGATCTTCTGTTATATACAA+AGG + chr3_1:22551404-22551423 Msa0353010:CDS 25.0%
!! TTTTCAGTGATGTAAATCAA+CGG - chr3_1:22551444-22551463 None:intergenic 25.0%
! TTGATTTACATCACTGAAAA+TGG + chr3_1:22551444-22551463 Msa0353010:CDS 25.0%
! GATAATATAGATGACGATAA+TGG - chr3_1:22551663-22551682 None:intergenic 25.0%
! TAGAACATCGTTAAATTGAT+TGG - chr3_1:22551744-22551763 None:intergenic 25.0%
TTCCCCAAAGGATTTATATT+TGG + chr3_1:22548846-22548865 Msa0353010:CDS 30.0%
CTCCAAATATAAATCCTTTG+GGG - chr3_1:22548851-22548870 None:intergenic 30.0%
GCTCCAAATATAAATCCTTT+GGG - chr3_1:22548852-22548871 None:intergenic 30.0%
TGCTCCAAATATAAATCCTT+TGG - chr3_1:22548853-22548872 None:intergenic 30.0%
! AAAGGATTTATATTTGGAGC+AGG + chr3_1:22548852-22548871 Msa0353010:CDS 30.0%
GTAATTAATTACCTGGTATG+AGG - chr3_1:22548883-22548902 None:intergenic 30.0%
GTAGTTGTGATATGAATCAA+TGG - chr3_1:22549356-22549375 None:intergenic 30.0%
TGATTCATATCACAACTACA+AGG + chr3_1:22549357-22549376 Msa0353010:CDS 30.0%
GTGCATTACACTTATATCTA+AGG + chr3_1:22549476-22549495 Msa0353010:intron 30.0%
AATCATCAAGGATATGAACT+TGG + chr3_1:22549634-22549653 Msa0353010:CDS 30.0%
CAATTTCATCAACGAGTTAT+TGG + chr3_1:22549848-22549867 Msa0353010:CDS 30.0%
!! ATTGGTGACTCTTTTTCATT+GGG + chr3_1:22549979-22549998 Msa0353010:CDS 30.0%
!! GAACTTTGCTTTAAGGAATT+TGG + chr3_1:22550169-22550188 Msa0353010:CDS 30.0%
! TTGGTGATAGAGTGAAATAT+TGG + chr3_1:22550188-22550207 Msa0353010:CDS 30.0%
TGGTGATAGAGTGAAATATT+GGG + chr3_1:22550189-22550208 Msa0353010:CDS 30.0%
ATATGGCAAAAGTCTAACAA+TGG - chr3_1:22550440-22550459 None:intergenic 30.0%
TGTTTATATGTTACATGTGC+AGG + chr3_1:22550545-22550564 Msa0353010:intron 30.0%
!!! CATTAGGGTTTTGTTATCAT+TGG + chr3_1:22550797-22550816 Msa0353010:intron 30.0%
GTTGATTGATTACAGGTTTA+TGG + chr3_1:22550904-22550923 Msa0353010:intron 30.0%
!!! GCTTGTTTTGCATTGAATTT+TGG - chr3_1:22550989-22551008 None:intergenic 30.0%
AATTCAATGCAAAACAAGCT+AGG + chr3_1:22550990-22551009 Msa0353010:CDS 30.0%
! GAAATTAGTTTCTTACATGC+AGG - chr3_1:22551133-22551152 None:intergenic 30.0%
TAGTAAGAGAACTCATAGAA+TGG - chr3_1:22551158-22551177 None:intergenic 30.0%
TGACTTACCTTAATACCAAT+AGG - chr3_1:22551263-22551282 None:intergenic 30.0%
TTTCAGTGATGTAAATCAAC+GGG - chr3_1:22551443-22551462 None:intergenic 30.0%
TAGTCTCTTACATCTCTAAA+AGG + chr3_1:22551704-22551723 Msa0353010:intron 30.0%
CTGTCATACATAAAGGAAAA+TGG - chr3_1:22551769-22551788 None:intergenic 30.0%
! CATTTTCCTTTATGTATGAC+AGG + chr3_1:22551767-22551786 Msa0353010:intron 30.0%
AAATGTCATTCCAAATCTCA+CGG - chr3_1:22551863-22551882 None:intergenic 30.0%
! ACATTTGTGGATTACAAGAA+TGG + chr3_1:22551877-22551896 Msa0353010:CDS 30.0%
AATGAAGCAACATCAAGAAG+TGG - chr3_1:22548813-22548832 None:intergenic 35.0%
TGGTAGAACACCAAGTATAT+GGG + chr3_1:22549156-22549175 Msa0353010:CDS 35.0%
!! GTGAAAGTATCCCATATACT+TGG - chr3_1:22549169-22549188 None:intergenic 35.0%
ACTTTCACCCATAAATATCC+AGG + chr3_1:22549181-22549200 Msa0353010:CDS 35.0%
GGAAGATGTTAGAATCATCA+AGG + chr3_1:22549622-22549641 Msa0353010:intron 35.0%
CAATATTCTAGACCAGGATA+AGG - chr3_1:22549675-22549694 None:intergenic 35.0%
TCCATAATAGAAGGAAAGCT+TGG + chr3_1:22549789-22549808 Msa0353010:intron 35.0%
ACCAAGCTTTCCTTCTATTA+TGG - chr3_1:22549793-22549812 None:intergenic 35.0%
ATAATAGAAGGAAAGCTTGG+TGG + chr3_1:22549792-22549811 Msa0353010:intron 35.0%
! ATCAACGAGTTATTGGCTAA+TGG + chr3_1:22549855-22549874 Msa0353010:CDS 35.0%
CAATGAAAAAGAGTCACCAA+TGG - chr3_1:22549980-22549999 None:intergenic 35.0%
!! CATTGGTGACTCTTTTTCAT+TGG + chr3_1:22549978-22549997 Msa0353010:CDS 35.0%
!! ACTCATCTTCTAAAGCTTGT+GGG - chr3_1:22550009-22550028 None:intergenic 35.0%
!! TACTCATCTTCTAAAGCTTG+TGG - chr3_1:22550010-22550029 None:intergenic 35.0%
!! CAAGCTTTAGAAGATGAGTA+TGG + chr3_1:22550010-22550029 Msa0353010:CDS 35.0%
CTATGCAGAACTTTGCTTTA+AGG + chr3_1:22550162-22550181 Msa0353010:CDS 35.0%
AGTCAAAATGGCTATGCAAA+TGG + chr3_1:22550238-22550257 Msa0353010:CDS 35.0%
TGGTTGAATCCAAATTGTAC+CGG + chr3_1:22550289-22550308 Msa0353010:CDS 35.0%
CTTTGTCTTGTACACATTGA+CGG - chr3_1:22550377-22550396 None:intergenic 35.0%
! TGTGTACAAGACAAAGTATC+AGG + chr3_1:22550381-22550400 Msa0353010:CDS 35.0%
! GAAACTCAAAAGGGTGTAAT+AGG + chr3_1:22550567-22550586 Msa0353010:CDS 35.0%
TTTATGGATCCACTTACAAC+AGG + chr3_1:22550920-22550939 Msa0353010:CDS 35.0%
AAAGAATCTGTCAAGTAGCT+AGG - chr3_1:22551103-22551122 None:intergenic 35.0%
TAGCTACTTGACAGATTCTT+TGG + chr3_1:22551102-22551121 Msa0353010:CDS 35.0%
TTAATTGCAGTTGAGCGAAA+TGG + chr3_1:22551233-22551252 Msa0353010:intron 35.0%
TAATTGCAGTTGAGCGAAAT+GGG + chr3_1:22551234-22551253 Msa0353010:intron 35.0%
TGGGAAACCTATTGGTATTA+AGG + chr3_1:22551253-22551272 Msa0353010:CDS 35.0%
CAGCAAAATCGTTAGAAGAA+AGG - chr3_1:22551292-22551311 None:intergenic 35.0%
! CTTTCTTCTAACGATTTTGC+TGG + chr3_1:22551290-22551309 Msa0353010:intron 35.0%
TTATGCAGATTGCTTCTGAT+TGG + chr3_1:22551355-22551374 Msa0353010:intron 35.0%
ATACAGTGATCCTACACTAT+CGG + chr3_1:22551600-22551619 Msa0353010:CDS 35.0%
ACGTCCAAGGATATTACATA+TGG + chr3_1:22551800-22551819 Msa0353010:CDS 35.0%
AGGACCATATGTAATATCCT+TGG - chr3_1:22551807-22551826 None:intergenic 35.0%
CCATTCAAAATTGTCGAACA+AGG - chr3_1:22551827-22551846 None:intergenic 35.0%
! CCTTGTTCGACAATTTTGAA+TGG + chr3_1:22551824-22551843 Msa0353010:CDS 35.0%
! GAGATTTGGAATGACATTTG+TGG + chr3_1:22551864-22551883 Msa0353010:CDS 35.0%
CAAAAGCAATTAGGCAGAGA+AGG - chr3_1:22548737-22548756 None:intergenic 40.0%
GCACAAGTGCAAAAGCAATT+AGG - chr3_1:22548746-22548765 None:intergenic 40.0%
AGTAGAAACAGTTTCCCCAA+AGG + chr3_1:22548834-22548853 Msa0353010:CDS 40.0%
! TTTGAAGGTGCAGCAAATGA+AGG + chr3_1:22549133-22549152 Msa0353010:CDS 40.0%
GTGGTAGAACACCAAGTATA+TGG + chr3_1:22549155-22549174 Msa0353010:CDS 40.0%
CATACAGATTCTCCTTATCC+TGG + chr3_1:22549660-22549679 Msa0353010:CDS 40.0%
ACTTGGCAATATTCTAGACC+AGG - chr3_1:22549681-22549700 None:intergenic 40.0%
! GGTGGTGGTATAAATCAAGA+AGG + chr3_1:22549810-22549829 Msa0353010:CDS 40.0%
!! GCTTTAGAAGATGAGTATGG+TGG + chr3_1:22550013-22550032 Msa0353010:CDS 40.0%
TTGGAAACTCACACTATGAG+AGG - chr3_1:22550049-22550068 None:intergenic 40.0%
AGCAAAGTTCTGCATAGTCT+TGG - chr3_1:22550159-22550178 None:intergenic 40.0%
! GGGTTACTTTGAATGAACCA+TGG + chr3_1:22550209-22550228 Msa0353010:CDS 40.0%
!!! CCATTTTGACTGTAACTCCA+TGG - chr3_1:22550229-22550248 None:intergenic 40.0%
CCATGGAGTTACAGTCAAAA+TGG + chr3_1:22550226-22550245 Msa0353010:CDS 40.0%
TTGAATCCAAATTGTACCGG+TGG + chr3_1:22550292-22550311 Msa0353010:CDS 40.0%
! TGGTAGTGCGTGACAATATA+GGG - chr3_1:22550334-22550353 None:intergenic 40.0%
!! TTGGTAGTGCGTGACAATAT+AGG - chr3_1:22550335-22550354 None:intergenic 40.0%
ACATGTGCAGGAAACTCAAA+AGG + chr3_1:22550557-22550576 Msa0353010:intron 40.0%
CATGTGCAGGAAACTCAAAA+GGG + chr3_1:22550558-22550577 Msa0353010:intron 40.0%
GGGTGTAATAGGAATAACCT+TGG + chr3_1:22550578-22550597 Msa0353010:CDS 40.0%
! GAATAACCTTGGTAGCTAAC+TGG + chr3_1:22550589-22550608 Msa0353010:CDS 40.0%
GGATAATCTCCTGTTGTAAG+TGG - chr3_1:22550932-22550951 None:intergenic 40.0%
! ACAAGGGATCTCATGCTTTT+TGG - chr3_1:22550953-22550972 None:intergenic 40.0%
! AAAAGCATGAGATCCCTTGT+TGG + chr3_1:22550953-22550972 Msa0353010:CDS 40.0%
TGGTAATCTTGCTCCAACAA+GGG - chr3_1:22550969-22550988 None:intergenic 40.0%
! TTGGTAATCTTGCTCCAACA+AGG - chr3_1:22550970-22550989 None:intergenic 40.0%
AAACAAGCTAGGCTACTCAT+TGG + chr3_1:22551001-22551020 Msa0353010:CDS 40.0%
GGTCTAGCATTGCTTAGAAA+TGG - chr3_1:22551082-22551101 None:intergenic 40.0%
TGGTTGTATGTTTATCCGAG+AGG + chr3_1:22551375-22551394 Msa0353010:CDS 40.0%
AGAAGATCACGAATTCCTCT+CGG - chr3_1:22551393-22551412 None:intergenic 40.0%
GACGTGCATACTTCACTTAT+AGG + chr3_1:22551568-22551587 Msa0353010:intron 40.0%
TCCTTTATGTATGACAGGCA+AGG + chr3_1:22551772-22551791 Msa0353010:intron 40.0%
ACCTTGCCTGTCATACATAA+AGG - chr3_1:22551776-22551795 None:intergenic 40.0%
! CGACAATTTTGAATGGTGCT+CGG + chr3_1:22551831-22551850 Msa0353010:CDS 40.0%
! GACAATTTTGAATGGTGCTC+GGG + chr3_1:22551832-22551851 Msa0353010:CDS 40.0%
! ATAGAAGGAAAGCTTGGTGG+TGG + chr3_1:22549795-22549814 Msa0353010:intron 45.0%
TGGCTATGCAAATGGACGAA+TGG + chr3_1:22550246-22550265 Msa0353010:CDS 45.0%
AACCAACTAGAACAACGACC+TGG - chr3_1:22550274-22550293 None:intergenic 45.0%
GAATCACCACCGGTACAATT+TGG - chr3_1:22550301-22550320 None:intergenic 45.0%
CTTGTACACATTGACGGCTT+CGG - chr3_1:22550371-22550390 None:intergenic 45.0%
! ATTTGGAATCTGAGAGTGGC+AGG - chr3_1:22550617-22550636 None:intergenic 45.0%
! TCGGATTTGGAATCTGAGAG+TGG - chr3_1:22550621-22550640 None:intergenic 45.0%
TCTTTCAGCGGCTTTCTGAT+CGG - chr3_1:22550640-22550659 None:intergenic 45.0%
!! AGAGCTGTCGACTTCATGTA+TGG + chr3_1:22550657-22550676 Msa0353010:CDS 45.0%
!! CTGTCGACTTCATGTATGGA+TGG + chr3_1:22550661-22550680 Msa0353010:CDS 45.0%
TCAAAAAGAGTGAGGGGAAG+AGG - chr3_1:22550695-22550714 None:intergenic 45.0%
GCTTAGAAATGGTGCATCTG+AGG - chr3_1:22551071-22551090 None:intergenic 45.0%
GAGCGAAATGGGAAACCTAT+TGG + chr3_1:22551245-22551264 Msa0353010:CDS 45.0%
GATTCTTGGACCGATAGTGT+AGG - chr3_1:22551613-22551632 None:intergenic 45.0%
AAGTGTCCATGAGCGATTCT+TGG - chr3_1:22551627-22551646 None:intergenic 45.0%
TCGGGTTATTCCGTGAGATT+TGG + chr3_1:22551850-22551869 Msa0353010:CDS 45.0%
AGCAGGATCTTCCTCATACC+AGG + chr3_1:22548869-22548888 Msa0353010:CDS 50.0%
! GAAGGTGCAGCAAATGAAGG+TGG + chr3_1:22549136-22549155 Msa0353010:CDS 50.0%
CACCAGGTCGTTGTTCTAGT+TGG + chr3_1:22550269-22550288 Msa0353010:CDS 50.0%
CTCAATCGCAGAATCACCAC+CGG - chr3_1:22550311-22550330 None:intergenic 50.0%
CTTCGGCATGAGCTAGAAGT+TGG - chr3_1:22550354-22550373 None:intergenic 50.0%
CAGGTACCAGTTAGCTACCA+AGG - chr3_1:22550598-22550617 None:intergenic 50.0%
AGCGGCTTTCTGATCGGATT+TGG - chr3_1:22550634-22550653 None:intergenic 50.0%
GAAGTCGACAGCTCTTTCAG+CGG - chr3_1:22550652-22550671 None:intergenic 50.0%
ATCGGTCCAAGAATCGCTCA+TGG + chr3_1:22551618-22551637 Msa0353010:CDS 50.0%
ACGAGAAACTTTCTGCGCTG+TGG + chr3_1:22551911-22551930 Msa0353010:CDS 50.0%
GCAAATGGACGAATGGCACC+AGG + chr3_1:22550253-22550272 Msa0353010:CDS 55.0%
AGGCAAGGTGCAAACGTCCA+AGG + chr3_1:22551787-22551806 Msa0353010:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 22548720 22552005 22548720 ID=Msa0353010;Name=Msa0353010
chr3_1 mRNA 22548720 22552005 22548720 ID=Msa0353010-mRNA-1;Parent=Msa0353010;Name=Msa0353010-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|13|0|530
chr3_1 exon 22548720 22548890 22548720 ID=Msa0353010-mRNA-1:exon:5073;Parent=Msa0353010-mRNA-1
chr3_1 exon 22549133 22549202 22549133 ID=Msa0353010-mRNA-1:exon:5074;Parent=Msa0353010-mRNA-1
chr3_1 exon 22549320 22549378 22549320 ID=Msa0353010-mRNA-1:exon:5075;Parent=Msa0353010-mRNA-1
chr3_1 exon 22549623 22549698 22549623 ID=Msa0353010-mRNA-1:exon:5076;Parent=Msa0353010-mRNA-1
chr3_1 exon 22549799 22549876 22549799 ID=Msa0353010-mRNA-1:exon:5077;Parent=Msa0353010-mRNA-1
chr3_1 exon 22549969 22550056 22549969 ID=Msa0353010-mRNA-1:exon:5078;Parent=Msa0353010-mRNA-1
chr3_1 exon 22550147 22550402 22550147 ID=Msa0353010-mRNA-1:exon:5079;Parent=Msa0353010-mRNA-1
chr3_1 exon 22550567 22550682 22550567 ID=Msa0353010-mRNA-1:exon:5080;Parent=Msa0353010-mRNA-1
chr3_1 exon 22550919 22551136 22550919 ID=Msa0353010-mRNA-1:exon:5081;Parent=Msa0353010-mRNA-1
chr3_1 exon 22551243 22551274 22551243 ID=Msa0353010-mRNA-1:exon:5082;Parent=Msa0353010-mRNA-1
chr3_1 exon 22551363 22551465 22551363 ID=Msa0353010-mRNA-1:exon:5083;Parent=Msa0353010-mRNA-1
chr3_1 exon 22551590 22551698 22551590 ID=Msa0353010-mRNA-1:exon:5084;Parent=Msa0353010-mRNA-1
chr3_1 exon 22551789 22552005 22551789 ID=Msa0353010-mRNA-1:exon:5085;Parent=Msa0353010-mRNA-1
chr3_1 CDS 22548720 22548890 22548720 ID=Msa0353010-mRNA-1:cds;Parent=Msa0353010-mRNA-1
chr3_1 CDS 22549133 22549202 22549133 ID=Msa0353010-mRNA-1:cds;Parent=Msa0353010-mRNA-1
chr3_1 CDS 22549320 22549378 22549320 ID=Msa0353010-mRNA-1:cds;Parent=Msa0353010-mRNA-1
chr3_1 CDS 22549623 22549698 22549623 ID=Msa0353010-mRNA-1:cds;Parent=Msa0353010-mRNA-1
chr3_1 CDS 22549799 22549876 22549799 ID=Msa0353010-mRNA-1:cds;Parent=Msa0353010-mRNA-1
chr3_1 CDS 22549969 22550056 22549969 ID=Msa0353010-mRNA-1:cds;Parent=Msa0353010-mRNA-1
chr3_1 CDS 22550147 22550402 22550147 ID=Msa0353010-mRNA-1:cds;Parent=Msa0353010-mRNA-1
chr3_1 CDS 22550567 22550682 22550567 ID=Msa0353010-mRNA-1:cds;Parent=Msa0353010-mRNA-1
chr3_1 CDS 22550919 22551136 22550919 ID=Msa0353010-mRNA-1:cds;Parent=Msa0353010-mRNA-1
chr3_1 CDS 22551243 22551274 22551243 ID=Msa0353010-mRNA-1:cds;Parent=Msa0353010-mRNA-1
chr3_1 CDS 22551363 22551465 22551363 ID=Msa0353010-mRNA-1:cds;Parent=Msa0353010-mRNA-1
chr3_1 CDS 22551590 22551698 22551590 ID=Msa0353010-mRNA-1:cds;Parent=Msa0353010-mRNA-1
chr3_1 CDS 22551789 22552005 22551789 ID=Msa0353010-mRNA-1:cds;Parent=Msa0353010-mRNA-1
Gene Sequence

>Msa0353010

ATGACATTCAATTACCTTCTCTGCCTAATTGCTTTTGCACTTGTGCTTAGCAAAACAAATGTCAATTGCATTGAAACGGTTGAAGTTGATCCACTTCTTGATGTTGCTTCATTGAGTAGAAACAGTTTCCCCAAAGGATTTATATTTGGAGCAGGATCTTCCTCATACCAGTTTGAAGGTGCAGCAAATGAAGGTGGTAGAACACCAAGTATATGGGATACTTTCACCCATAAATATCCAGAAAAGATCAAAGATAGAAGCAATGCAGATGTAGCCATTGATTCATATCACAACTACAAGGAAGATGTTAGAATCATCAAGGATATGAACTTGGATTCATACAGATTCTCCTTATCCTGGTCTAGAATATTGCCAAAAGGAAAGCTTGGTGGTGGTATAAATCAAGAAGGAATCAACTATTACAACAATTTCATCAACGAGTTATTGGCTAATGGTATAAAACCATTGGTGACTCTTTTTCATTGGGATCTCCCACAAGCTTTAGAAGATGAGTATGGTGGTTTCTTAAGTCCTCTCATAGTAAAAGATTTCCAAGACTATGCAGAACTTTGCTTTAAGGAATTTGGTGATAGAGTGAAATATTGGGTTACTTTGAATGAACCATGGAGTTACAGTCAAAATGGCTATGCAAATGGACGAATGGCACCAGGTCGTTGTTCTAGTTGGTTGAATCCAAATTGTACCGGTGGTGATTCTGCGATTGAGCCCTATATTGTCACGCACTACCAACTTCTAGCTCATGCCGAAGCCGTCAATGTGTACAAGACAAAGTATCAGGAAACTCAAAAGGGTGTAATAGGAATAACCTTGGTAGCTAACTGGTACCTGCCACTCTCAGATTCCAAATCCGATCAGAAAGCCGCTGAAAGAGCTGTCGACTTCATGTATGGATGGTTTATGGATCCACTTACAACAGGAGATTATCCAAAAAGCATGAGATCCCTTGTTGGAGCAAGATTACCAAAATTCAATGCAAAACAAGCTAGGCTACTCATTGGTTCATTTGATTTTATTGGTTTGAACTATTATTCTTCAACATATGCCTCAGATGCACCATTTCTAAGCAATGCTAGACCTAGCTACTTGACAGATTCTTTGGTTAATCCTGCATTTGAGCGAAATGGGAAACCTATTGGTATTAAGATTGCTTCTGATTGGTTGTATGTTTATCCGAGAGGAATTCGTGATCTTCTGTTATATACAAAGGAAAAGTACAATAACCCGTTGATTTACATCACTGAAAATGGTATTAACGAATACAGTGATCCTACACTATCGGTCCAAGAATCGCTCATGGACACTTTTCGAATTGATTACCATTATCGTCATCTATATTATCTTCGATCTGCAATTGAGCAAGGTGCAAACGTCCAAGGATATTACATATGGTCCTTGTTCGACAATTTTGAATGGTGCTCGGGTTATTCCGTGAGATTTGGAATGACATTTGTGGATTACAAGAATGGTTTGAAAAGATACGAGAAACTTTCTGCGCTGTGGTTCAAGAATTTTCTCAGAAAAGAAACTAAACTTATGTTTCTTGTGAGAAAAGTTATTAGTTTTATTCATTAA
Protein sequence

>Msa0353010

MTFNYLLCLIAFALVLSKTNVNCIETVEVDPLLDVASLSRNSFPKGFIFGAGSSSYQFEGAANEGGRTPSIWDTFTHKYPEKIKDRSNADVAIDSYHNYKEDVRIIKDMNLDSYRFSLSWSRILPKGKLGGGINQEGINYYNNFINELLANGIKPLVTLFHWDLPQALEDEYGGFLSPLIVKDFQDYAELCFKEFGDRVKYWVTLNEPWSYSQNGYANGRMAPGRCSSWLNPNCTGGDSAIEPYIVTHYQLLAHAEAVNVYKTKYQETQKGVIGITLVANWYLPLSDSKSDQKAAERAVDFMYGWFMDPLTTGDYPKSMRSLVGARLPKFNAKQARLLIGSFDFIGLNYYSSTYASDAPFLSNARPSYLTDSLVNPAFERNGKPIGIKIASDWLYVYPRGIRDLLLYTKEKYNNPLIYITENGINEYSDPTLSVQESLMDTFRIDYHYRHLYYLRSAIEQGANVQGYYIWSLFDNFEWCSGYSVRFGMTFVDYKNGLKRYEKLSALWFKNFLRKETKLMFLVRKVISFIH*