AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0333560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0333560 MtrunA17_Chr2g0317131 94.297 491 28 0 1 491 1 491 0.0 917
Msa0333560 MtrunA17_Chr2g0317151 87.780 491 50 2 1 491 1 481 0.0 831
Msa0333560 MtrunA17_Chr2g0317171 81.504 492 83 2 1 491 1 485 0.0 786
Msa0333560 MtrunA17_Chr2g0317161 80.448 491 84 1 1 491 1 479 0.0 783
Msa0333560 MtrunA17_Chr2g0317221 86.514 393 53 0 99 491 7 399 0.0 665
Msa0333560 MtrunA17_Chr6g0483361 42.048 459 249 5 24 476 13 460 3.87e-122 365
Msa0333560 MtrunA17_Chr6g0483381 40.041 482 275 4 11 488 4 475 3.51e-121 363
Msa0333560 MtrunA17_Chr1g0208791 41.379 435 255 0 42 476 42 476 4.77e-120 361
Msa0333560 MtrunA17_Chr8g0392601 39.866 449 264 1 28 476 3 445 1.97e-119 358
Msa0333560 MtrunA17_Chr6g0483341 38.702 447 270 2 43 488 41 484 4.68e-114 345
Msa0333560 MtrunA17_Chr1g0208821 39.362 470 279 2 22 491 23 486 2.31e-113 343
Msa0333560 MtrunA17_Chr6g0477961 40.402 448 260 3 46 488 30 475 2.27e-110 335
Msa0333560 MtrunA17_Chr6g0483331 38.137 451 267 4 43 488 12 455 1.38e-107 328
Msa0333560 MtrunA17_Chr7g0251331 38.789 446 271 1 36 479 17 462 1.78e-103 318
Msa0333560 MtrunA17_Chr4g0024501 36.756 487 297 4 12 487 22 508 4.08e-103 318
Msa0333560 MtrunA17_Chr6g0449061 36.495 485 289 4 6 489 8 474 1.21e-101 313
Msa0333560 MtrunA17_Chr2g0322671 35.050 505 310 4 3 489 2 506 3.63e-101 313
Msa0333560 MtrunA17_Chr6g0483351 41.470 381 213 3 102 476 1 377 1.51e-99 306
Msa0333560 MtrunA17_Chr1g0208881 37.020 443 278 1 43 485 25 466 4.74e-95 296
Msa0333560 MtrunA17_Chr6g0483161 40.000 380 203 3 100 476 1 358 1.94e-91 283
Msa0333560 MtrunA17_Chr1g0208891 35.714 448 277 3 43 485 24 465 2.03e-89 281
Msa0333560 MtrunA17_Chr5g0442331 34.979 466 293 3 34 490 38 502 2.68e-87 276
Msa0333560 MtrunA17_Chr2g0288281 35.492 386 249 0 102 487 1 386 4.02e-84 265
Msa0333560 MtrunA17_Chr8g0368001 33.563 435 288 1 42 476 49 482 3.18e-81 261
Msa0333560 MtrunA17_Chr5g0412771 33.559 444 293 2 44 486 57 499 7.22e-81 260
Msa0333560 MtrunA17_Chr7g0254511 35.870 460 292 2 25 483 12 469 2.33e-80 258
Msa0333560 MtrunA17_Chr5g0397991 32.568 479 300 5 24 486 34 505 6.85e-79 256
Msa0333560 MtrunA17_Chr5g0412541 34.910 444 279 4 54 488 47 489 7.14e-79 254
Msa0333560 MtrunA17_Chr1g0202761 33.473 478 301 6 10 476 3 474 1.36e-78 254
Msa0333560 MtrunA17_Chr1g0203791 33.803 426 276 2 52 474 73 495 3.55e-78 254
Msa0333560 MtrunA17_Chr7g0254521 34.273 461 288 2 43 489 31 490 8.73e-75 244
Msa0333560 MtrunA17_Chr7g0251321 35.200 375 224 1 102 476 1 356 6.52e-74 238
Msa0333560 MtrunA17_Chr6g0468531 34.043 470 297 5 11 476 2 462 1.90e-73 240
Msa0333560 MtrunA17_Chr8g0389801 34.332 434 281 3 42 474 22 452 1.07e-72 237
Msa0333560 MtrunA17_Chr6g0468521 32.218 478 294 6 11 476 2 461 4.73e-72 236
Msa0333560 MtrunA17_Chr6g0473701 31.161 491 307 8 11 474 73 559 2.54e-71 238
Msa0333560 MtrunA17_Chr5g0428251 29.757 494 319 5 12 486 11 495 4.10e-70 233
Msa0333560 MtrunA17_Chr3g0132531 33.491 424 280 2 54 476 57 479 1.45e-69 230
Msa0333560 MtrunA17_Chr7g0254531 36.623 385 240 3 102 485 1 382 2.32e-69 227
Msa0333560 MtrunA17_Chr7g0248051 35.102 490 293 6 6 476 18 501 1.15e-68 228
Msa0333560 MtrunA17_Chr1g0154441 34.400 375 245 1 102 476 1 374 6.56e-67 220
Msa0333560 MtrunA17_Chr6g0468511 32.762 467 306 4 11 476 2 461 2.48e-66 221
Msa0333560 MtrunA17_Chr6g0460541 35.544 377 241 1 100 476 3 377 9.63e-66 218
Msa0333560 MtrunA17_Chr6g0467321 30.000 450 306 3 43 483 42 491 1.79e-63 214
Msa0333560 MtrunA17_Chr3g0140931 29.556 450 308 4 10 455 19 463 6.96e-62 211
Msa0333560 MtrunA17_Chr5g0412571 36.548 394 237 8 100 488 38 423 1.17e-61 207
Msa0333560 MtrunA17_Chr4g0013031 30.569 422 285 4 43 459 66 484 1.04e-59 205
Msa0333560 MtrunA17_Chr4g0025551 62.011 179 45 4 121 299 1 156 8.54e-56 183
Msa0333560 MtrunA17_Chr7g0254501 36.893 309 185 3 187 487 2 308 1.31e-53 183
Msa0333560 MtrunA17_Chr2g0317211 82.000 100 12 1 1 100 1 94 1.24e-50 168
Msa0333560 MtrunA17_Chr3g0132541 27.119 472 279 5 7 476 10 418 5.56e-48 171
Msa0333560 MtrunA17_Chr5g0440661 29.178 377 203 6 102 477 1 314 4.58e-44 157
Msa0333560 MtrunA17_Chr2g0295631 25.442 452 319 3 42 476 19 469 1.08e-43 161
Msa0333560 MtrunA17_Chr8g0364761 31.641 256 174 1 56 310 66 321 3.56e-39 144
Msa0333560 MtrunA17_Chr6g0483264 40.000 195 117 0 282 476 1 195 6.98e-39 140
Msa0333560 MtrunA17_Chr6g0483241 38.122 181 112 0 100 280 1 181 1.56e-38 138
Msa0333560 MtrunA17_Chr8g0364751 43.506 154 87 0 323 476 13 166 1.52e-32 122
Msa0333560 MtrunA17_Chr6g0487091 27.635 351 222 7 145 476 46 383 9.71e-32 126
Msa0333560 MtrunA17_Chr6g0460521 39.394 198 120 0 279 476 1 198 1.92e-30 118
Msa0333560 MtrunA17_Chr6g0483221 43.709 151 79 2 329 476 6 153 2.00e-29 113
Msa0333560 MtrunA17_Chr5g0398571 32.653 196 132 0 281 476 85 280 1.28e-27 112
Msa0333560 MtrunA17_Chr6g0483261 39.865 148 89 0 329 476 6 153 1.99e-24 100
Msa0333560 MtrunA17_Chr6g0460531 30.126 239 164 2 43 280 24 260 6.02e-23 98.2
Msa0333560 MtrunA17_Chr5g0442311 27.374 179 130 0 102 280 1 179 2.78e-19 85.5
Msa0333560 MtrunA17_Chr5g0398551 41.176 85 50 0 38 122 38 122 2.21e-14 70.1
Msa0333560 MtrunA17_Chr7g0254491 35.238 105 66 1 25 129 14 116 3.61e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0333560 AT3G23560.1 59.746 472 189 1 9 480 5 475 0.0 584
Msa0333560 AT3G23550.1 59.957 462 185 0 17 478 4 465 0.0 575
Msa0333560 AT3G23560.2 59.102 401 163 1 9 409 5 404 1.35e-170 487
Msa0333560 AT1G73700.1 41.922 489 261 2 6 486 1 474 2.28e-116 351
Msa0333560 AT2G34360.1 42.984 449 248 3 29 476 12 453 4.01e-116 350
Msa0333560 AT5G52450.1 44.470 434 241 0 43 476 25 458 1.80e-115 349
Msa0333560 AT1G15150.1 38.925 465 277 2 30 491 14 474 2.23e-106 326
Msa0333560 AT1G15170.1 38.351 485 283 3 7 488 4 475 5.69e-103 317
Msa0333560 AT1G66760.2 37.292 480 289 3 11 489 6 474 1.19e-102 316
Msa0333560 AT1G66760.1 37.768 466 279 2 11 476 6 460 2.30e-102 315
Msa0333560 AT1G15160.1 37.740 469 287 2 25 490 9 475 1.91e-101 313
Msa0333560 AT2G04040.1 37.723 448 274 3 44 490 27 470 2.80e-100 310
Msa0333560 AT2G34360.2 38.393 448 228 1 29 476 12 411 3.23e-97 300
Msa0333560 AT1G11670.1 36.712 444 281 0 44 487 50 493 4.88e-97 302
Msa0333560 AT3G21690.1 34.694 490 311 3 7 487 6 495 7.98e-97 301
Msa0333560 AT1G71140.1 36.283 452 272 5 42 482 24 470 1.44e-95 298
Msa0333560 AT2G04080.1 35.938 448 282 3 44 490 27 470 2.91e-95 296
Msa0333560 AT2G04070.1 35.974 467 279 5 32 490 16 470 4.82e-95 296
Msa0333560 AT2G04080.2 36.866 434 272 2 44 476 27 459 1.70e-94 295
Msa0333560 AT2G04100.2 37.076 472 289 5 11 480 2 467 2.62e-94 294
Msa0333560 AT2G04100.1 37.045 467 287 4 11 476 2 462 2.82e-94 294
Msa0333560 AT1G15180.1 38.359 451 265 2 10 457 8 448 3.78e-94 294
Msa0333560 AT2G04050.1 35.041 488 290 5 11 490 2 470 1.08e-93 293
Msa0333560 AT1G61890.1 35.202 446 289 0 42 487 45 490 9.42e-92 288
Msa0333560 AT2G04090.1 36.538 468 288 5 11 476 2 462 3.23e-91 286
Msa0333560 AT1G61890.2 35.632 435 280 0 42 476 45 479 4.87e-91 286
Msa0333560 AT4G21903.1 37.931 406 251 1 71 476 80 484 1.76e-90 285
Msa0333560 AT4G21903.2 37.931 406 251 1 71 476 80 484 2.98e-90 285
Msa0333560 AT1G66780.1 35.461 423 272 1 63 485 54 475 4.05e-90 284
Msa0333560 AT1G47530.1 36.207 464 291 3 13 476 8 466 1.40e-88 280
Msa0333560 AT3G59030.1 34.504 484 300 6 8 476 2 483 7.14e-87 276
Msa0333560 AT4G21910.2 35.335 433 279 1 44 476 57 488 1.66e-86 275
Msa0333560 AT4G21910.4 35.335 433 279 1 44 476 57 488 1.66e-86 275
Msa0333560 AT4G21910.3 34.873 433 281 1 44 476 55 486 1.39e-85 273
Msa0333560 AT4G21910.1 34.873 433 281 1 44 476 55 486 1.39e-85 273
Msa0333560 AT1G64820.1 33.778 450 289 3 40 485 25 469 1.55e-85 272
Msa0333560 AT1G23300.1 36.028 433 276 1 44 476 44 475 3.47e-85 272
Msa0333560 AT1G33090.1 36.501 463 287 2 14 476 12 467 3.49e-84 268
Msa0333560 AT1G15170.2 40.115 349 206 1 140 488 11 356 1.65e-83 263
Msa0333560 AT1G33110.1 34.156 486 302 4 14 488 12 490 1.74e-83 267
Msa0333560 AT1G61890.3 35.627 407 262 0 42 448 45 451 2.01e-83 266
Msa0333560 AT1G15150.2 40.341 352 206 1 140 491 11 358 3.14e-83 262
Msa0333560 AT3G26590.1 33.559 444 293 2 44 486 45 487 3.30e-83 266
Msa0333560 AT4G21903.3 37.067 375 236 0 102 476 1 375 1.96e-82 261
Msa0333560 AT1G66760.4 37.343 399 239 2 11 409 6 393 4.12e-82 260
Msa0333560 AT5G38030.1 32.883 444 296 2 44 486 45 487 1.30e-81 262
Msa0333560 AT1G12950.1 33.853 449 285 4 44 486 67 509 5.74e-81 261
Msa0333560 AT1G33100.1 34.773 463 301 1 25 487 14 475 7.68e-81 259
Msa0333560 AT5G44050.1 34.105 475 302 4 3 476 8 472 7.30e-78 252
Msa0333560 AT1G47530.2 37.067 375 235 1 102 476 1 374 6.72e-77 246
Msa0333560 AT4G00350.1 33.693 463 300 3 15 476 62 518 6.73e-77 251
Msa0333560 AT1G33080.1 33.833 467 301 3 10 476 9 467 1.13e-76 249
Msa0333560 AT1G33080.2 33.833 467 301 3 10 476 9 467 1.42e-76 248
Msa0333560 AT3G26590.2 34.715 386 250 2 102 486 1 385 1.26e-75 243
Msa0333560 AT5G10420.1 35.468 406 257 2 54 457 48 450 1.06e-70 233
Msa0333560 AT5G65380.1 32.415 472 308 5 7 476 7 469 8.70e-70 231
Msa0333560 AT2G38510.1 32.176 432 287 4 43 470 5 434 2.87e-69 229
Msa0333560 AT5G19700.1 29.325 474 334 1 11 483 2 475 5.94e-67 224
Msa0333560 AT4G23030.1 33.406 458 290 5 42 487 30 484 5.16e-66 221
Msa0333560 AT4G29140.1 30.505 436 297 2 42 474 54 486 2.58e-65 220
Msa0333560 AT4G25640.1 32.189 466 309 4 12 476 5 464 2.88e-65 219
Msa0333560 AT1G66760.3 35.045 331 215 0 146 476 2 332 3.02e-65 214
Msa0333560 AT4G25640.2 32.189 466 309 4 12 476 5 464 5.65e-65 219
Msa0333560 AT5G52050.1 29.184 490 320 6 6 485 7 479 2.54e-64 217
Msa0333560 AT5G17700.2 31.635 471 308 8 20 485 14 475 8.10e-64 215
Msa0333560 AT5G17700.1 31.635 471 308 8 20 485 14 475 8.10e-64 215
Msa0333560 AT1G58340.1 30.913 427 294 1 30 455 43 469 2.84e-63 215
Msa0333560 AT1G33110.2 33.501 397 257 2 14 410 12 401 5.73e-62 208
Msa0333560 AT3G03620.2 31.155 459 305 5 19 474 16 466 3.69e-61 208
Msa0333560 AT3G03620.1 31.155 459 305 5 19 474 16 466 3.69e-61 208
Msa0333560 AT4G25640.3 31.871 433 290 3 12 444 5 432 1.80e-60 206
Msa0333560 AT3G59030.2 31.655 417 268 6 7 409 3 416 2.72e-60 204
Msa0333560 AT5G49130.1 30.599 451 295 5 42 476 24 472 9.46e-59 202
Msa0333560 AT1G71870.1 28.261 460 312 3 42 483 22 481 1.05e-58 202
Msa0333560 AT1G15180.2 38.889 270 165 0 140 409 11 280 7.17e-56 192
Msa0333560 AT4G22790.1 30.501 459 310 5 25 476 8 464 3.43e-55 192
Msa0333560 AT5G17700.3 31.218 394 258 7 20 409 14 398 2.16e-49 174
Msa0333560 AT2G04066.1 32.215 149 90 2 342 490 28 165 2.31e-19 85.9

Find 116 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCATTTGTCCTCCATTTC+TGG 0.007321 2_4:+51408597 None:intergenic
CTATGATGATGTAGGGTTTA+TGG 0.149157 2_4:-51403511 Msa0333560:intron
GCAATTCAAGATAAATTATT+TGG 0.162900 2_4:+51408799 None:intergenic
CAAATGGTGGAACAAAATTT+TGG 0.202523 2_4:-51408583 Msa0333560:CDS
TAAGACCAATTTGCATTATA+AGG 0.233144 2_4:-51403873 Msa0333560:intron
ATTGCATGTTTAGCTCTTTC+AGG 0.235007 2_4:+51404272 None:intergenic
GTGCTACTCTTGCTAATTCA+TGG 0.271247 2_4:-51408434 Msa0333560:CDS
CACAAGGATTTCCAATGAAT+TGG 0.272145 2_4:-51404306 Msa0333560:CDS
ATTGCTTACATGATCACTTA+TGG 0.287008 2_4:-51404487 Msa0333560:CDS
CAATTTCATTGATTGCAATA+TGG 0.290681 2_4:-51404607 Msa0333560:intron
TTGGTTTCTGTTATGCTTGT+TGG 0.295934 2_4:-51408483 Msa0333560:CDS
TTATGCAAGTTTGGAGTATT+GGG 0.298247 2_4:-51404681 Msa0333560:intron
TGTGGCCTAGTGTGTCAAAT+TGG 0.300864 2_4:-51403476 Msa0333560:CDS
TAGGGCAGATGAAAATTTAT+TGG 0.302483 2_4:-51408883 Msa0333560:five_prime_UTR
ACTATGGATATCTATGATAT+TGG 0.310139 2_4:-51405384 Msa0333560:CDS
GATATTCAGTTTAGTCCATT+TGG 0.317374 2_4:+51403427 None:intergenic
TCTGTCCAAGGTGTCTTATC+AGG 0.328815 2_4:-51404089 Msa0333560:intron
GTTATGCTTGTTGGTCATCT+TGG 0.329823 2_4:-51408474 Msa0333560:CDS
TGATAGTCCTATTATCAAAA+AGG 0.356312 2_4:-51404159 Msa0333560:CDS
TTGCAACTTCTATTTCACTA+TGG 0.356695 2_4:-51405400 Msa0333560:CDS
CTGTACCCTATCATTCTTGT+TGG 0.356729 2_4:+51408828 None:intergenic
TGGACAGGTTTGAGTTTCAT+AGG 0.359141 2_4:-51405431 Msa0333560:CDS
CCATCATTATATCAATTGTT+TGG 0.361460 2_4:-51405673 Msa0333560:CDS
ACAAGGATTTCCAATGAATT+GGG 0.362220 2_4:-51404305 Msa0333560:CDS
TTGCATATGGATTTGTTCAA+TGG 0.367870 2_4:-51405451 Msa0333560:CDS
TGATACCTTATAATGCAAAT+TGG 0.372077 2_4:+51403868 None:intergenic
TTATGGATTGGTCTAATTTG+TGG 0.372381 2_4:-51403494 Msa0333560:CDS
GAAATTGTTATTTGTGAGTC+AGG 0.374296 2_4:+51404623 None:intergenic
TTGGACAGAATCTAGTAGTA+TGG 0.375092 2_4:+51404103 None:intergenic
ATTCATGTTGGAATTGCATA+TGG 0.380327 2_4:-51405464 Msa0333560:CDS
ATTATGCAAGTTTGGAGTAT+TGG 0.381254 2_4:-51404682 Msa0333560:intron
ACACTCTGTGGACAAGGATT+TGG 0.381964 2_4:-51405761 Msa0333560:CDS
CATAATGCAGGGGTGGTTAG+AGG 0.384287 2_4:-51403980 Msa0333560:intron
AAATCCATGGAGACATGAAA+TGG 0.396463 2_4:+51403895 None:intergenic
ACGGACCCAACAAGAATGAT+AGG 0.397149 2_4:-51408834 Msa0333560:five_prime_UTR
TTGTCTTAGGTTGGCTTAAG+TGG 0.409422 2_4:-51405794 Msa0333560:intron
CTTGGTGAGCTTCAGCTAGC+TGG 0.410162 2_4:-51408456 Msa0333560:CDS
CTAAAGCTGTCTGTCCTCCT+TGG 0.415938 2_4:-51404239 Msa0333560:CDS
TGAAAACATGAGTTGATGTT+TGG 0.423843 2_4:+51408548 None:intergenic
TGGACTAAACTGAATATCTC+AGG 0.424887 2_4:-51403422 Msa0333560:CDS
TGTCACTGGCGTAGCAGTTA+TGG 0.436994 2_4:-51408406 Msa0333560:intron
GCAGGGGTGGTTAGAGGATG+TGG 0.439484 2_4:-51403974 Msa0333560:intron
TATGGATTTGTTCAATGGAC+AGG 0.441588 2_4:-51405446 Msa0333560:CDS
TGTACCCTATCATTCTTGTT+GGG 0.441968 2_4:+51408829 None:intergenic
ACAAAACACGAGACCAGAAA+TGG 0.447290 2_4:-51408610 Msa0333560:CDS
TTTCCATTACCATGGGTTGT+TGG 0.465555 2_4:+51408633 None:intergenic
GTTGTTATACAGCAATAAGT+TGG 0.467334 2_4:+51403384 None:intergenic
GGACTGAATATGTATGTGTT+TGG 0.469505 2_4:-51403348 Msa0333560:three_prime_UTR
CTGCCAACAACCCATGGTAA+TGG 0.471883 2_4:-51408636 Msa0333560:CDS
CAAAGAAGTTTGAGAATACA+TGG 0.472713 2_4:-51405340 Msa0333560:CDS
TTCCAACATGAATCAATGTT+GGG 0.472995 2_4:+51405474 None:intergenic
TTCTAGCAATGTCTGGTGAT+TGG 0.478680 2_4:+51405618 None:intergenic
AAACTAGCTCTTCCCTCTGC+AGG 0.482981 2_4:-51405272 Msa0333560:CDS
ATTCCAACATGAATCAATGT+TGG 0.483393 2_4:+51405473 None:intergenic
GCAAAGGAATATCACATGTT+GGG 0.494571 2_4:-51405737 Msa0333560:CDS
CATTTATATGAGCTGCCACT+TGG 0.494852 2_4:+51403323 None:intergenic
TTCCCTCTGCAGGAATGGTA+TGG 0.496185 2_4:-51405262 Msa0333560:intron
GACCAGAAATGGAGGACAAA+TGG 0.499736 2_4:-51408599 Msa0333560:CDS
TTACCCATTTCATGTCTCCA+TGG 0.500125 2_4:-51403899 Msa0333560:CDS
TGGATATCTATGATATTGGT+AGG 0.501013 2_4:-51405380 Msa0333560:CDS
AATTCATGGTTTAGTGTCAC+TGG 0.501136 2_4:-51408420 Msa0333560:CDS
GCAAATTGGTCTTAAATCCA+TGG 0.504782 2_4:+51403882 None:intergenic
GTGGCCTAGTGTGTCAAATT+GGG 0.511399 2_4:-51403475 Msa0333560:CDS
GAAGCTGTTCTAGCAATGTC+TGG 0.513096 2_4:+51405611 None:intergenic
TTGGAGTAGTTACTACAAAA+CGG 0.514802 2_4:-51408959 Msa0333560:five_prime_UTR
CCAAACAATTGATATAATGA+TGG 0.515139 2_4:+51405673 None:intergenic
AGTGAAATAGAAGTTGCAAC+TGG 0.517295 2_4:+51405404 None:intergenic
AGCTCTTCCCTCTGCAGGAA+TGG 0.518192 2_4:-51405267 Msa0333560:CDS
GCAAGGCAGAAATATATATG+AGG 0.522170 2_4:-51403153 Msa0333560:three_prime_UTR
ATCCCAACATTGATTCATGT+TGG 0.524947 2_4:-51405476 Msa0333560:CDS
AGGATGTGGTTGGCAGCACT+TGG 0.524967 2_4:-51403960 Msa0333560:CDS
CATGTTTAGCTCTTTCAGGA+TGG 0.526642 2_4:+51404276 None:intergenic
CTAGAAACACTCTGTGGACA+AGG 0.528099 2_4:-51405767 Msa0333560:CDS
AATCCATGGAGACATGAAAT+GGG 0.529512 2_4:+51403896 None:intergenic
TTAGCTTCTCTTCCTTCATG+TGG 0.529966 2_4:+51408727 None:intergenic
TGCAAAGGAATATCACATGT+TGG 0.536998 2_4:-51405738 Msa0333560:CDS
ACGCTATATGCAAATAATCC+TGG 0.537941 2_4:+51405566 None:intergenic
GCGTCTTGCAAAACTTGTTG+AGG 0.540279 2_4:-51405547 Msa0333560:CDS
TCAAAACAAAACAGAATCCA+AGG 0.547423 2_4:+51404222 None:intergenic
TATATGAAGTTTCTTATACC+AGG 0.554707 2_4:-51405584 Msa0333560:CDS
ATGTTGGGAATTTATCTACA+AGG 0.560309 2_4:-51405722 Msa0333560:CDS
TGGGTTGTTGGCAGTAATAG+AGG 0.560816 2_4:+51408645 None:intergenic
CTATTACTGCCAACAACCCA+TGG 0.562222 2_4:-51408642 Msa0333560:CDS
ATGATGTAGGGTTTATGGAT+TGG 0.565269 2_4:-51403506 Msa0333560:intron
GGGTGGTTAGAGGATGTGGT+TGG 0.574146 2_4:-51403970 Msa0333560:CDS
GGACTAAACTGAATATCTCA+GGG 0.578407 2_4:-51403421 Msa0333560:CDS
CAAGGATTTCCAATGAATTG+GGG 0.583001 2_4:-51404304 Msa0333560:CDS
AAGTTTGAGAATACATGGAG+AGG 0.586144 2_4:-51405335 Msa0333560:CDS
ACAATCTGTAGTAATGCCAC+TGG 0.591821 2_4:-51405513 Msa0333560:CDS
ATACTACTAGATTCTGTCCA+AGG 0.600992 2_4:-51404101 Msa0333560:CDS
TACCATACCATTCCTGCAGA+GGG 0.603751 2_4:+51405260 None:intergenic
TCAAACCTGATAAGACACCT+TGG 0.605007 2_4:+51404084 None:intergenic
TTTGTCAATAAAGTTGCGTG+AGG 0.605601 2_4:-51408926 Msa0333560:five_prime_UTR
TGAGAACGCATATTGTTGCA+AGG 0.606112 2_4:-51403170 Msa0333560:three_prime_UTR
CAGAAATGGAGGACAAATGG+TGG 0.611520 2_4:-51408596 Msa0333560:CDS
TCAATGTTGGGATAGCTGAA+AGG 0.615047 2_4:+51405486 None:intergenic
TGGACAAGGATTTGGTGCAA+AGG 0.616863 2_4:-51405753 Msa0333560:CDS
CGGACCCAACAAGAATGATA+GGG 0.619350 2_4:-51408833 Msa0333560:five_prime_UTR
AATCATAACAGACCACATGA+AGG 0.629970 2_4:-51408739 Msa0333560:five_prime_UTR
ATGGTCTTAGTGCAGCTGCA+AGG 0.630564 2_4:-51404468 Msa0333560:intron
CAATGTCTGGTGATTGGTGA+AGG 0.631557 2_4:+51405624 None:intergenic
AAACACGAGACCAGAAATGG+AGG 0.636830 2_4:-51408607 Msa0333560:CDS
AGTATGGAAATAGCAAGCAA+AGG 0.641984 2_4:+51404119 None:intergenic
GCAGCAAGTATCATTTCAGA+CGG 0.643990 2_4:-51408678 Msa0333560:CDS
GTGTCCCAATTTGACACACT+AGG 0.649634 2_4:+51403471 None:intergenic
ATACCATACCATTCCTGCAG+AGG 0.653111 2_4:+51405259 None:intergenic
AAGGATTTCCAATGAATTGG+GGG 0.656984 2_4:-51404303 Msa0333560:CDS
TGGCAGCTCATATAAATGCG+TGG 0.670185 2_4:-51403318 Msa0333560:three_prime_UTR
ACAGGTTTGAGTTTCATAGG+TGG 0.681266 2_4:-51405428 Msa0333560:CDS
AAGATAGTTCAAAATTCACA+TGG 0.684402 2_4:-51408700 Msa0333560:exon
ATAACAACTGAACTATACGT+AGG 0.698814 2_4:-51403369 Msa0333560:exon
ATAGCTGAAAGGATAACCAG+TGG 0.728809 2_4:+51405497 None:intergenic
GACTAAACTGAATATCTCAG+GGG 0.730170 2_4:-51403420 Msa0333560:CDS
GGTGCACTAGAAACACTCTG+TGG 0.762528 2_4:-51405773 Msa0333560:CDS
AAACAAAACAGAATCCAAGG+AGG 0.770094 2_4:+51404225 None:intergenic
TGTATGTGTTTGGAACCAAG+TGG 0.823659 2_4:-51403338 Msa0333560:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTTATTAAATAACTTTA+GGG - chr2_4:51403839-51403858 Msa0333560:intron 10.0%
!! AAAATTATAATAAAGAATTG+AGG + chr2_4:51404221-51404240 None:intergenic 10.0%
!! AAAATATTATACTCTATAAT+GGG + chr2_4:51404798-51404817 None:intergenic 10.0%
!! ATTTATTTCATTATAAAAAG+TGG + chr2_4:51404884-51404903 None:intergenic 10.0%
!! AAACAAATAAAAAAATGATA+AGG + chr2_4:51405902-51405921 None:intergenic 10.0%
!! AATAAGTTTGTAAAAATCAT+TGG + chr2_4:51403591-51403610 None:intergenic 15.0%
!!! ATTTTATTACTTGATTACTT+TGG - chr2_4:51403608-51403627 Msa0333560:intron 15.0%
!! CAATGTTATTAAATAACTTT+AGG - chr2_4:51403838-51403857 Msa0333560:intron 15.0%
!! CAAATATGAAAATAATTCAT+TGG + chr2_4:51403982-51404001 None:intergenic 15.0%
!!! ATAAACTTTTTCTTATAACA+AGG + chr2_4:51404485-51404504 None:intergenic 15.0%
!!! ACTTGATTCTTATTTTTTTT+AGG - chr2_4:51404665-51404684 Msa0333560:CDS 15.0%
!!! CTTGATTCTTATTTTTTTTA+GGG - chr2_4:51404666-51404685 Msa0333560:CDS 15.0%
!! AAATATTATACTCTATAATG+GGG + chr2_4:51404797-51404816 None:intergenic 15.0%
!! CAAAATATTATACTCTATAA+TGG + chr2_4:51404799-51404818 None:intergenic 15.0%
!!! CATTATAGAGTATAATATTT+TGG - chr2_4:51404797-51404816 Msa0333560:intron 15.0%
!! TCTTATATTTGATTCTTAAA+TGG + chr2_4:51405038-51405057 None:intergenic 15.0%
!! ATAATCAATTGAAGTAAATT+TGG - chr2_4:51405173-51405192 Msa0333560:intron 15.0%
!! TAATCAATTGAAGTAAATTT+GGG - chr2_4:51405174-51405193 Msa0333560:intron 15.0%
!! TAAAAAAACAAAAATTAGTG+AGG + chr2_4:51405675-51405694 None:intergenic 15.0%
!!! AAATTTGTTTATATGAGAAT+TGG - chr2_4:51405977-51405996 Msa0333560:intron 15.0%
!!! TCTAAAATCAATCATAAAAA+AGG + chr2_4:51406907-51406926 None:intergenic 15.0%
!!! ATTGATCATTTAAGTTATTT+TGG - chr2_4:51407097-51407116 Msa0333560:intron 15.0%
!! ATAGTAAGATTCATAATATA+AGG + chr2_4:51407397-51407416 None:intergenic 15.0%
!!! TTTAGTAAAAATTCTCTTTT+CGG + chr2_4:51408346-51408365 None:intergenic 15.0%
!! CATAAAAATTAGTTCAATTA+AGG - chr2_4:51408497-51408516 Msa0333560:CDS 15.0%
!! GCAATTCAAGATAAATTATT+TGG + chr2_4:51403314-51403333 None:intergenic 20.0%
!! GCGTAAACATTTATATTTAT+TGG + chr2_4:51404120-51404139 None:intergenic 20.0%
!!! TATTTAATACGGTGTTAAAT+AGG + chr2_4:51404770-51404789 None:intergenic 20.0%
!! TATTTAACACCGTATTAAAT+AGG - chr2_4:51404769-51404788 Msa0333560:intron 20.0%
!!! AGTAATTTCTTTTGAAGTTT+TGG - chr2_4:51404952-51404971 Msa0333560:intron 20.0%
!! TTTCGTGCATAATTTAATAA+AGG - chr2_4:51405445-51405464 Msa0333560:CDS 20.0%
!! TTATATTAAAGAATGCTCTA+AGG - chr2_4:51405469-51405488 Msa0333560:CDS 20.0%
!! AAAACAACAAAAACAAAATG+GGG + chr2_4:51405943-51405962 None:intergenic 20.0%
!! CAAAACAACAAAAACAAAAT+GGG + chr2_4:51405944-51405963 None:intergenic 20.0%
!! ACAAAACAACAAAAACAAAA+TGG + chr2_4:51405945-51405964 None:intergenic 20.0%
!! AAAAGGACAAATAAATTGAA+AGG + chr2_4:51406890-51406909 None:intergenic 20.0%
!!! ACAAAGTTTGCTAAATTATT+AGG - chr2_4:51406929-51406948 Msa0333560:intron 20.0%
!!! TATATTAGACTTTTGATTGT+TGG - chr2_4:51407031-51407050 Msa0333560:intron 20.0%
!!! TATTTTGTATTATGCAAGTT+TGG - chr2_4:51407420-51407439 Msa0333560:intron 20.0%
!! TTCATTGACAAAAAAATCTT+AGG - chr2_4:51408092-51408111 Msa0333560:intron 20.0%
!! TCATTGACAAAAAAATCTTA+GGG - chr2_4:51408093-51408112 Msa0333560:intron 20.0%
!!! TAAACAAAAATTCTCTTTTC+AGG + chr2_4:51408443-51408462 None:intergenic 20.0%
!!! AAGTGAATTTTTTGGGTATT+GGG - chr2_4:51403253-51403272 Msa0333560:three_prime_UTR 25.0%
! AAGATAGTTCAAAATTCACA+TGG - chr2_4:51403410-51403429 Msa0333560:CDS 25.0%
! ATTGTTCATATGAACATCTA+TGG + chr2_4:51403771-51403790 None:intergenic 25.0%
! TTCATATGAACAATTCTTGT+GGG - chr2_4:51403777-51403796 Msa0333560:intron 25.0%
! ACATATCATGTTAAAGTTAC+GGG + chr2_4:51404044-51404063 None:intergenic 25.0%
! CACATATCATGTTAAAGTTA+CGG + chr2_4:51404045-51404064 None:intergenic 25.0%
!! TATTGATTAACTGATGTATC+TGG + chr2_4:51404299-51404318 None:intergenic 25.0%
!!! TTGCTTTAAAAAGACTTAAG+AGG - chr2_4:51404407-51404426 Msa0333560:intron 25.0%
! CATTGAATAACTGATGTATT+TGG + chr2_4:51404554-51404573 None:intergenic 25.0%
! TCATAACGCTATACTTTATT+TGG + chr2_4:51404612-51404631 None:intergenic 25.0%
!!! ATTTCTTTTGAAGTTTTGGT+TGG - chr2_4:51404956-51404975 Msa0333560:intron 25.0%
! AAATATAAGATGCTATGTTG+TGG - chr2_4:51405048-51405067 Msa0333560:intron 25.0%
! AAAGTTGTTGCAAACATTAA+TGG + chr2_4:51405124-51405143 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG + chr2_4:51405295-51405314 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr2_4:51405294-51405313 Msa0333560:CDS 25.0%
! TTCTTATTGGTCAAAAACTA+TGG - chr2_4:51405307-51405326 Msa0333560:CDS 25.0%
!!! AACCATTTTTTGACAACTTT+TGG + chr2_4:51405392-51405411 None:intergenic 25.0%
! TACTAGGAAAAGAGAAATTA+GGG - chr2_4:51405544-51405563 Msa0333560:CDS 25.0%
! GTATGTTCATCATAAACTTT+AGG - chr2_4:51405727-51405746 Msa0333560:CDS 25.0%
!! CATATAAACAAATTTTGCAG+AGG + chr2_4:51405972-51405991 None:intergenic 25.0%
!!! GTAGTTGCAGTTTATTTTAT+GGG + chr2_4:51406068-51406087 None:intergenic 25.0%
!!! TGTAGTTGCAGTTTATTTTA+TGG + chr2_4:51406069-51406088 None:intergenic 25.0%
! AGTTTAACCTTGTAAATTCA+AGG - chr2_4:51406114-51406133 Msa0333560:intron 25.0%
! ACTTTAAATTTCCTTGAACA+TGG - chr2_4:51406142-51406161 Msa0333560:intron 25.0%
!!! TAATTTTTCAACCATGTTCA+AGG + chr2_4:51406156-51406175 None:intergenic 25.0%
! GTCTGAATATGTAAAATTAG+AGG - chr2_4:51406214-51406233 Msa0333560:intron 25.0%
! CCAAACAATTGATATAATGA+TGG + chr2_4:51406440-51406459 None:intergenic 25.0%
! CCATCATTATATCAATTGTT+TGG - chr2_4:51406437-51406456 Msa0333560:intron 25.0%
! TATATGAAGTTTCTTATACC+AGG - chr2_4:51406526-51406545 Msa0333560:intron 25.0%
! ACTATGGATATCTATGATAT+TGG - chr2_4:51406726-51406745 Msa0333560:intron 25.0%
! GAAAACGTTTACAAACTTAA+AGG + chr2_4:51407216-51407235 None:intergenic 25.0%
!! ACATAAGTCATTTAAGTTTG+AGG + chr2_4:51407287-51407306 None:intergenic 25.0%
!!! ATTGGTCCTTTAAGTTATTT+TGG + chr2_4:51407314-51407333 None:intergenic 25.0%
! TTAAGTGTGATGTAACATAT+TGG + chr2_4:51407332-51407351 None:intergenic 25.0%
!! CAATTTCATTGATTGCAATA+TGG - chr2_4:51407503-51407522 Msa0333560:intron 25.0%
!!! TTGAACTTTTTTATAGCACA+AGG - chr2_4:51407788-51407807 Msa0333560:intron 25.0%
!!! TTTGTTTTGATGCTTTTGTT+TGG - chr2_4:51407901-51407920 Msa0333560:intron 25.0%
!!! TTTTGTTTGGTCATGATATA+TGG - chr2_4:51407914-51407933 Msa0333560:intron 25.0%
! TGATAGTCCTATTATCAAAA+AGG - chr2_4:51407951-51407970 Msa0333560:intron 25.0%
! CATTGACAAAAAAATCTTAG+GGG - chr2_4:51408094-51408113 Msa0333560:intron 25.0%
! TAAACCAATGAGATAAAAAG+TGG + chr2_4:51408194-51408213 None:intergenic 25.0%
! TAAGACCAATTTGCATTATA+AGG - chr2_4:51408237-51408256 Msa0333560:intron 25.0%
! TGATACCTTATAATGCAAAT+TGG + chr2_4:51408245-51408264 None:intergenic 25.0%
!! TAACAATGATAAGAGTATGT+AGG - chr2_4:51408463-51408482 Msa0333560:CDS 25.0%
!!! AATTTTGTCTATGATGATGT+AGG - chr2_4:51408591-51408610 Msa0333560:CDS 25.0%
!!! ATTTTGTCTATGATGATGTA+GGG - chr2_4:51408592-51408611 Msa0333560:CDS 25.0%
!!! TATCCAACTAGTTTTTCAGT+AGG - chr2_4:51403208-51403227 Msa0333560:three_prime_UTR 30.0%
!!! ATCCAACTAGTTTTTCAGTA+GGG - chr2_4:51403209-51403228 Msa0333560:three_prime_UTR 30.0%
TAGGGCAGATGAAAATTTAT+TGG - chr2_4:51403227-51403246 Msa0333560:three_prime_UTR 30.0%
!!! ATTGGTGCAAGTGAATTTTT+TGG - chr2_4:51403245-51403264 Msa0333560:three_prime_UTR 30.0%
!!! TTGGTGCAAGTGAATTTTTT+GGG - chr2_4:51403246-51403265 Msa0333560:three_prime_UTR 30.0%
!!! CAAGTGAATTTTTTGGGTAT+TGG - chr2_4:51403252-51403271 Msa0333560:three_prime_UTR 30.0%
!!! GTTTTGTTTTCCATTACCAT+GGG + chr2_4:51403487-51403506 None:intergenic 30.0%
!!! TGTTTTGTTTTCCATTACCA+TGG + chr2_4:51403488-51403507 None:intergenic 30.0%
!! CAAATGGTGGAACAAAATTT+TGG - chr2_4:51403527-51403546 Msa0333560:intron 30.0%
!! TGAAAACATGAGTTGATGTT+TGG + chr2_4:51403565-51403584 None:intergenic 30.0%
GTTCATATGAACAATTCTTG+TGG - chr2_4:51403776-51403795 Msa0333560:intron 30.0%
!! AATTATTAACTTGTGCCTTG+AGG - chr2_4:51404002-51404021 Msa0333560:intron 30.0%
!! ATTATTAACTTGTGCCTTGA+GGG - chr2_4:51404003-51404022 Msa0333560:intron 30.0%
ACTTCAGAGGAGATTATTTA+TGG + chr2_4:51405089-51405108 None:intergenic 30.0%
! TTTGTTACCATTGATGCTTT+TGG + chr2_4:51405152-51405171 None:intergenic 30.0%
!! TTGGGAAAGTACTAGTAAAT+TGG - chr2_4:51405192-51405211 Msa0333560:intron 30.0%
!! TGGGAAAGTACTAGTAAATT+GGG - chr2_4:51405193-51405212 Msa0333560:intron 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr2_4:51405269-51405288 None:intergenic 30.0%
AAAACTATGGAGAGAGAAAA+AGG - chr2_4:51405320-51405339 Msa0333560:CDS 30.0%
GTCCAAAAGTTGTCAAAAAA+TGG - chr2_4:51405387-51405406 Msa0333560:CDS 30.0%
TACTTTCTTAAACCACTACT+AGG - chr2_4:51405528-51405547 Msa0333560:CDS 30.0%
! AATTTCTCTTTTCCTAGTAG+TGG + chr2_4:51405543-51405562 None:intergenic 30.0%
CTACTAGGAAAAGAGAAATT+AGG - chr2_4:51405543-51405562 Msa0333560:CDS 30.0%
AAAATCCCTCACAAATTCTT+TGG - chr2_4:51405591-51405610 Msa0333560:CDS 30.0%
TTGGTCGCAAAATTTAGTTA+CGG - chr2_4:51405610-51405629 Msa0333560:CDS 30.0%
TAGTGAGGAAAATTTAGAGA+GGG + chr2_4:51405660-51405679 None:intergenic 30.0%
TTAGTGAGGAAAATTTAGAG+AGG + chr2_4:51405661-51405680 None:intergenic 30.0%
AAGTTTATGATGAACATACG+TGG + chr2_4:51405726-51405745 None:intergenic 30.0%
GTCATTTATTTCACGCAAAT+TGG - chr2_4:51406029-51406048 Msa0333560:intron 30.0%
ATTTATTTCACGCAAATTGG+AGG - chr2_4:51406032-51406051 Msa0333560:intron 30.0%
GTTCATACCTTGAATTTACA+AGG + chr2_4:51406124-51406143 None:intergenic 30.0%
ATGTTGGGAATTTATCTACA+AGG - chr2_4:51406388-51406407 Msa0333560:intron 30.0%
TTCCAACATGAATCAATGTT+GGG + chr2_4:51406639-51406658 None:intergenic 30.0%
ATTCCAACATGAATCAATGT+TGG + chr2_4:51406640-51406659 None:intergenic 30.0%
ATTCATGTTGGAATTGCATA+TGG - chr2_4:51406646-51406665 Msa0333560:intron 30.0%
! TTGCATATGGATTTGTTCAA+TGG - chr2_4:51406659-51406678 Msa0333560:intron 30.0%
TTGCAACTTCTATTTCACTA+TGG - chr2_4:51406710-51406729 Msa0333560:intron 30.0%
TGGATATCTATGATATTGGT+AGG - chr2_4:51406730-51406749 Msa0333560:intron 30.0%
CAAAGAAGTTTGAGAATACA+TGG - chr2_4:51406770-51406789 Msa0333560:intron 30.0%
!! AGTTTGCTAAATTATTAGGC+CGG - chr2_4:51406933-51406952 Msa0333560:intron 30.0%
AAATGTTGCTCAAAGTAAAC+CGG + chr2_4:51406955-51406974 None:intergenic 30.0%
!! ATCATCGTTTTTGTAACGTT+TGG + chr2_4:51407177-51407196 None:intergenic 30.0%
! GTTTGAGGTTTGTAACAAAT+TGG + chr2_4:51407272-51407291 None:intergenic 30.0%
GTGTGACCAAAATAACTTAA+AGG - chr2_4:51407305-51407324 Msa0333560:intron 30.0%
ACAAAGTCTAAATTACACCA+GGG + chr2_4:51407359-51407378 None:intergenic 30.0%
AACAAAGTCTAAATTACACC+AGG + chr2_4:51407360-51407379 None:intergenic 30.0%
! ATTATGCAAGTTTGGAGTAT+TGG - chr2_4:51407428-51407447 Msa0333560:intron 30.0%
! TTATGCAAGTTTGGAGTATT+GGG - chr2_4:51407429-51407448 Msa0333560:intron 30.0%
!!! GTATTGGGCTTTTGAAATTT+TGG - chr2_4:51407444-51407463 Msa0333560:intron 30.0%
!!! GAAATTTTGGTTTTCTTAGC+TGG - chr2_4:51407457-51407476 Msa0333560:intron 30.0%
!! GAAATTGTTATTTGTGAGTC+AGG + chr2_4:51407490-51407509 None:intergenic 30.0%
! TCATTGATTGCAATATGGTA+TGG - chr2_4:51407508-51407527 Msa0333560:intron 30.0%
ATTGCTTACATGATCACTTA+TGG - chr2_4:51407623-51407642 Msa0333560:intron 30.0%
ACAAGGATTTCCAATGAATT+GGG - chr2_4:51407805-51407824 Msa0333560:intron 30.0%
TCAAAACAAAACAGAATCCA+AGG + chr2_4:51407891-51407910 None:intergenic 30.0%
!! GCAAACTCCTTTTTGATAAT+AGG + chr2_4:51407961-51407980 None:intergenic 30.0%
AAAAATGTCTTGCATAATGC+AGG - chr2_4:51408118-51408137 Msa0333560:intron 30.0%
AAAATGTCTTGCATAATGCA+GGG - chr2_4:51408119-51408138 Msa0333560:intron 30.0%
!! TTATGGATTGGTCTAATTTG+TGG - chr2_4:51408616-51408635 Msa0333560:CDS 30.0%
GATATTCAGTTTAGTCCATT+TGG + chr2_4:51408686-51408705 None:intergenic 30.0%
GTTGTTATACAGCAATAAGT+TGG + chr2_4:51408729-51408748 None:intergenic 30.0%
ATAACAACTGAACTATACGT+AGG - chr2_4:51408741-51408760 Msa0333560:five_prime_UTR 30.0%
TTTGTCAATAAAGTTGCGTG+AGG - chr2_4:51403184-51403203 Msa0333560:three_prime_UTR 35.0%
!!! GAATTTTTTGGGTATTGGGA+CGG - chr2_4:51403257-51403276 Msa0333560:three_prime_UTR 35.0%
TGTACCCTATCATTCTTGTT+GGG + chr2_4:51403284-51403303 None:intergenic 35.0%
AATCATAACAGACCACATGA+AGG - chr2_4:51403371-51403390 Msa0333560:exon 35.0%
! GTGGAACAAAATTTTGGACA+TGG - chr2_4:51403533-51403552 Msa0333560:intron 35.0%
! GAACAAAATTTTGGACATGG+AGG - chr2_4:51403536-51403555 Msa0333560:intron 35.0%
TTGGTTTCTGTTATGCTTGT+TGG - chr2_4:51403627-51403646 Msa0333560:intron 35.0%
AATTCATGGTTTAGTGTCAC+TGG - chr2_4:51403690-51403709 Msa0333560:intron 35.0%
CACGGACATTCAAAAACATA+TGG - chr2_4:51403813-51403832 Msa0333560:intron 35.0%
TAGTGTTAAATTGTGCCCTT+AGG - chr2_4:51403862-51403881 Msa0333560:intron 35.0%
AGTGTTAAATTGTGCCCTTA+GGG - chr2_4:51403863-51403882 Msa0333560:intron 35.0%
TTTCTTAACATGTGCCCTAA+GGG + chr2_4:51403880-51403899 None:intergenic 35.0%
ATTTCTTAACATGTGCCCTA+AGG + chr2_4:51403881-51403900 None:intergenic 35.0%
AAGTATAGCGTTATGAAGTC+CGG - chr2_4:51404616-51404635 Msa0333560:CDS 35.0%
! AAGCCTTTTATTCTACCAAG+TGG + chr2_4:51404644-51404663 None:intergenic 35.0%
GAAACACTCGTCATTATAGA+TGG + chr2_4:51404746-51404765 None:intergenic 35.0%
AATGGGGAGCCTATTTAATA+CGG + chr2_4:51404781-51404800 None:intergenic 35.0%
TGCAAACATTAATGGTCCAT+TGG + chr2_4:51405116-51405135 None:intergenic 35.0%
TAGGAAAAGAGAAATTAGGG+AGG - chr2_4:51405547-51405566 Msa0333560:CDS 35.0%
AGGAAAAGAGAAATTAGGGA+GGG - chr2_4:51405548-51405567 Msa0333560:CDS 35.0%
TTTAGTTACGGAATCAGAGA+TGG - chr2_4:51405622-51405641 Msa0333560:CDS 35.0%
ATGATGAACATACGTGGAAA+TGG + chr2_4:51405720-51405739 None:intergenic 35.0%
ATAAACTGCAACTACACAAG+AGG - chr2_4:51406073-51406092 Msa0333560:intron 35.0%
TGCAAAGGAATATCACATGT+TGG - chr2_4:51406372-51406391 Msa0333560:intron 35.0%
GCAAAGGAATATCACATGTT+GGG - chr2_4:51406373-51406392 Msa0333560:intron 35.0%
ACGCTATATGCAAATAATCC+TGG + chr2_4:51406547-51406566 None:intergenic 35.0%
!! ATCCCAACATTGATTCATGT+TGG - chr2_4:51406634-51406653 Msa0333560:intron 35.0%
! TATGGATTTGTTCAATGGAC+AGG - chr2_4:51406664-51406683 Msa0333560:intron 35.0%
AGTGAAATAGAAGTTGCAAC+TGG + chr2_4:51406709-51406728 None:intergenic 35.0%
AAGTTTGAGAATACATGGAG+AGG - chr2_4:51406775-51406794 Msa0333560:intron 35.0%
! TACATGGAGAGGATTTTCAA+TGG - chr2_4:51406786-51406805 Msa0333560:intron 35.0%
ATTGTTGGCGAAATTACATC+TGG - chr2_4:51407046-51407065 Msa0333560:intron 35.0%
TTGTTGGCGAAATTACATCT+GGG - chr2_4:51407047-51407066 Msa0333560:intron 35.0%
!!! TCTGGGGTCTTTTAAGTTTA+AGG - chr2_4:51407064-51407083 Msa0333560:intron 35.0%
! TGTAACGTTTGGTTCACATA+GGG + chr2_4:51407166-51407185 None:intergenic 35.0%
! TTGTAACGTTTGGTTCACAT+AGG + chr2_4:51407167-51407186 None:intergenic 35.0%
ACGTTACAAAAACGATGATG+TGG - chr2_4:51407178-51407197 Msa0333560:intron 35.0%
AACAGAATCCATTCCTTCAT+AGG - chr2_4:51407681-51407700 Msa0333560:intron 35.0%
ACAGAATCCATTCCTTCATA+GGG - chr2_4:51407682-51407701 Msa0333560:intron 35.0%
CAATAAAATGACCCCTATGA+AGG + chr2_4:51407697-51407716 None:intergenic 35.0%
!! CTTCATAGGGGTCATTTTAT+TGG - chr2_4:51407695-51407714 Msa0333560:intron 35.0%
CACAAGGATTTCCAATGAAT+TGG - chr2_4:51407804-51407823 Msa0333560:intron 35.0%
CAAGGATTTCCAATGAATTG+GGG - chr2_4:51407806-51407825 Msa0333560:intron 35.0%
AAGGATTTCCAATGAATTGG+GGG - chr2_4:51407807-51407826 Msa0333560:intron 35.0%
!! ATTGCATGTTTAGCTCTTTC+AGG + chr2_4:51407841-51407860 None:intergenic 35.0%
AAACAAAACAGAATCCAAGG+AGG + chr2_4:51407888-51407907 None:intergenic 35.0%
AGTATGGAAATAGCAAGCAA+AGG + chr2_4:51407994-51408013 None:intergenic 35.0%
TTGGACAGAATCTAGTAGTA+TGG + chr2_4:51408010-51408029 None:intergenic 35.0%
ATACTACTAGATTCTGTCCA+AGG - chr2_4:51408009-51408028 Msa0333560:intron 35.0%
AAATGTCTTGCATAATGCAG+GGG - chr2_4:51408120-51408139 Msa0333560:intron 35.0%
CAATGAGATAAAAAGTGGCA+AGG + chr2_4:51408189-51408208 None:intergenic 35.0%
!!! CTTGCCACTTTTTATCTCAT+TGG - chr2_4:51408187-51408206 Msa0333560:intron 35.0%
AATCCATGGAGACATGAAAT+GGG + chr2_4:51408217-51408236 None:intergenic 35.0%
AAATCCATGGAGACATGAAA+TGG + chr2_4:51408218-51408237 None:intergenic 35.0%
!! GCAAATTGGTCTTAAATCCA+TGG + chr2_4:51408231-51408250 None:intergenic 35.0%
! CTATGATGATGTAGGGTTTA+TGG - chr2_4:51408599-51408618 Msa0333560:CDS 35.0%
ATGATGTAGGGTTTATGGAT+TGG - chr2_4:51408604-51408623 Msa0333560:CDS 35.0%
TGGACTAAACTGAATATCTC+AGG - chr2_4:51408688-51408707 Msa0333560:exon 35.0%
GGACTAAACTGAATATCTCA+GGG - chr2_4:51408689-51408708 Msa0333560:exon 35.0%
GACTAAACTGAATATCTCAG+GGG - chr2_4:51408690-51408709 Msa0333560:exon 35.0%
GGACTGAATATGTATGTGTT+TGG - chr2_4:51408762-51408781 Msa0333560:five_prime_UTR 35.0%
TGCCCTACTGAAAAACTAGT+TGG + chr2_4:51403214-51403233 None:intergenic 40.0%
CTGTACCCTATCATTCTTGT+TGG + chr2_4:51403285-51403304 None:intergenic 40.0%
TTAGCTTCTCTTCCTTCATG+TGG + chr2_4:51403386-51403405 None:intergenic 40.0%
GCAGCAAGTATCATTTCAGA+CGG - chr2_4:51403432-51403451 Msa0333560:CDS 40.0%
! TTTCCATTACCATGGGTTGT+TGG + chr2_4:51403480-51403499 None:intergenic 40.0%
ACAAAACACGAGACCAGAAA+TGG - chr2_4:51403500-51403519 Msa0333560:CDS 40.0%
! GTTATGCTTGTTGGTCATCT+TGG - chr2_4:51403636-51403655 Msa0333560:intron 40.0%
! GTGCTACTCTTGCTAATTCA+TGG - chr2_4:51403676-51403695 Msa0333560:intron 40.0%
! GTGGGTTCATTGATTAGACA+CGG - chr2_4:51403795-51403814 Msa0333560:intron 40.0%
! AATGATAACTTGTGCCCTCA+AGG + chr2_4:51404020-51404039 None:intergenic 40.0%
TTTATTCTACCAAGTGGTGC+CGG + chr2_4:51404638-51404657 None:intergenic 40.0%
GCACCACTTGGTAGAATAAA+AGG - chr2_4:51404638-51404657 Msa0333560:CDS 40.0%
!! TTGTCCTCCAAAAGCATCAA+TGG - chr2_4:51405142-51405161 Msa0333560:intron 40.0%
! GTTACCATTGATGCTTTTGG+AGG + chr2_4:51405149-51405168 None:intergenic 40.0%
TGCGACCAAAGAATTTGTGA+GGG + chr2_4:51405599-51405618 None:intergenic 40.0%
TTGCGACCAAAGAATTTGTG+AGG + chr2_4:51405600-51405619 None:intergenic 40.0%
ATACGTGGAAATGGTCTTCA+GGG + chr2_4:51405711-51405730 None:intergenic 40.0%
!! TTGTCTTAGGTTGGCTTAAG+TGG - chr2_4:51406316-51406335 Msa0333560:intron 40.0%
TTCTAGCAATGTCTGGTGAT+TGG + chr2_4:51406495-51406514 None:intergenic 40.0%
ACAATCTGTAGTAATGCCAC+TGG - chr2_4:51406597-51406616 Msa0333560:intron 40.0%
ATAGCTGAAAGGATAACCAG+TGG + chr2_4:51406616-51406635 None:intergenic 40.0%
TCAATGTTGGGATAGCTGAA+AGG + chr2_4:51406627-51406646 None:intergenic 40.0%
! TGGACAGGTTTGAGTTTCAT+AGG - chr2_4:51406679-51406698 Msa0333560:intron 40.0%
! ACAGGTTTGAGTTTCATAGG+TGG - chr2_4:51406682-51406701 Msa0333560:intron 40.0%
AAACTAGAAGCTAAGTGACC+GGG + chr2_4:51407003-51407022 None:intergenic 40.0%
CAAACTAGAAGCTAAGTGAC+CGG + chr2_4:51407004-51407023 None:intergenic 40.0%
TGTTGGCGAAATTACATCTG+GGG - chr2_4:51407048-51407067 Msa0333560:intron 40.0%
ACATCACACTTAAAAGACCC+TGG - chr2_4:51407339-51407358 Msa0333560:intron 40.0%
CAGAATCCATTCCTTCATAG+GGG - chr2_4:51407683-51407702 Msa0333560:intron 40.0%
AAATGACCCCTATGAAGGAA+TGG + chr2_4:51407692-51407711 None:intergenic 40.0%
!! CATGTTTAGCTCTTTCAGGA+TGG + chr2_4:51407837-51407856 None:intergenic 40.0%
TCAAACCTGATAAGACACCT+TGG + chr2_4:51408029-51408048 None:intergenic 40.0%
GCTGAAGTTAAAACGAGATG+AGG + chr2_4:51408055-51408074 None:intergenic 40.0%
TTACCCATTTCATGTCTCCA+TGG - chr2_4:51408211-51408230 Msa0333560:intron 40.0%
!! GGACACTCTTACTTTTGACA+AGG - chr2_4:51408656-51408675 Msa0333560:CDS 40.0%
! TTTTGACAAGGCATGCCAAA+TGG - chr2_4:51408668-51408687 Msa0333560:CDS 40.0%
! TGTATGTGTTTGGAACCAAG+TGG - chr2_4:51408772-51408791 Msa0333560:five_prime_UTR 40.0%
CATTTATATGAGCTGCCACT+TGG + chr2_4:51408790-51408809 None:intergenic 40.0%
TGAGAACGCATATTGTTGCA+AGG - chr2_4:51408940-51408959 Msa0333560:five_prime_UTR 40.0%
ACGGACCCAACAAGAATGAT+AGG - chr2_4:51403276-51403295 Msa0333560:three_prime_UTR 45.0%
CGGACCCAACAAGAATGATA+GGG - chr2_4:51403277-51403296 Msa0333560:three_prime_UTR 45.0%
TGGGTTGTTGGCAGTAATAG+AGG + chr2_4:51403468-51403487 None:intergenic 45.0%
CTATTACTGCCAACAACCCA+TGG - chr2_4:51403468-51403487 Msa0333560:CDS 45.0%
AAACACGAGACCAGAAATGG+AGG - chr2_4:51403503-51403522 Msa0333560:intron 45.0%
GACCAGAAATGGAGGACAAA+TGG - chr2_4:51403511-51403530 Msa0333560:intron 45.0%
CACCATTTGTCCTCCATTTC+TGG + chr2_4:51403516-51403535 None:intergenic 45.0%
CAGAAATGGAGGACAAATGG+TGG - chr2_4:51403514-51403533 Msa0333560:intron 45.0%
CATACGTGGAAATGGTCTTC+AGG + chr2_4:51405712-51405731 None:intergenic 45.0%
ACCTAAGACAACGAAGAGCA+AGG + chr2_4:51406307-51406326 None:intergenic 45.0%
TGCTCTTCGTTGTCTTAGGT+TGG - chr2_4:51406307-51406326 Msa0333560:intron 45.0%
CTAGAAACACTCTGTGGACA+AGG - chr2_4:51406343-51406362 Msa0333560:intron 45.0%
ACACTCTGTGGACAAGGATT+TGG - chr2_4:51406349-51406368 Msa0333560:intron 45.0%
!! TGGACAAGGATTTGGTGCAA+AGG - chr2_4:51406357-51406376 Msa0333560:intron 45.0%
CAATGTCTGGTGATTGGTGA+AGG + chr2_4:51406489-51406508 None:intergenic 45.0%
GAAGCTGTTCTAGCAATGTC+TGG + chr2_4:51406502-51406521 None:intergenic 45.0%
!! GCGTCTTGCAAAACTTGTTG+AGG - chr2_4:51406563-51406582 Msa0333560:intron 45.0%
TACCATACCATTCCTGCAGA+GGG + chr2_4:51406853-51406872 None:intergenic 45.0%
ATACCATACCATTCCTGCAG+AGG + chr2_4:51406854-51406873 None:intergenic 45.0%
AACTAGAAGCTAAGTGACCG+GGG + chr2_4:51407002-51407021 None:intergenic 45.0%
ATTTCCAATGAATTGGGGGC+AGG - chr2_4:51407811-51407830 Msa0333560:intron 45.0%
! TCTGTCCAAGGTGTCTTATC+AGG - chr2_4:51408021-51408040 Msa0333560:intron 45.0%
TGTGGCCTAGTGTGTCAAAT+TGG - chr2_4:51408634-51408653 Msa0333560:CDS 45.0%
GTGGCCTAGTGTGTCAAATT+GGG - chr2_4:51408635-51408654 Msa0333560:CDS 45.0%
GTGTCCCAATTTGACACACT+AGG + chr2_4:51408642-51408661 None:intergenic 45.0%
TGGCAGCTCATATAAATGCG+TGG - chr2_4:51408792-51408811 Msa0333560:five_prime_UTR 45.0%
!! AATATTTATTAAAATACTAA+AGG + chr2_4:51404074-51404093 None:intergenic 5.0%
!!! TTATAAAATTTTATCTAAAT+TGG + chr2_4:51405225-51405244 None:intergenic 5.0%
CTGCCAACAACCCATGGTAA+TGG - chr2_4:51403474-51403493 Msa0333560:CDS 50.0%
TGTCACTGGCGTAGCAGTTA+TGG - chr2_4:51403704-51403723 Msa0333560:intron 50.0%
TTATGAAGTCCGGCACCACT+TGG - chr2_4:51404626-51404645 Msa0333560:CDS 50.0%
!! CTCCTCTGAAGTGTAGCCAA+TGG - chr2_4:51405097-51405116 Msa0333560:intron 50.0%
! GTCCATTGGCTACACTTCAG+AGG + chr2_4:51405102-51405121 None:intergenic 50.0%
GCCTTGCTCTTCGTTGTCTT+AGG - chr2_4:51406303-51406322 Msa0333560:intron 50.0%
GGTGCACTAGAAACACTCTG+TGG - chr2_4:51406337-51406356 Msa0333560:intron 50.0%
! AAACTAGCTCTTCCCTCTGC+AGG - chr2_4:51406838-51406857 Msa0333560:intron 50.0%
TTCCCTCTGCAGGAATGGTA+TGG - chr2_4:51406848-51406867 Msa0333560:intron 50.0%
AGTTGAGTTACCCAATCCCC+CGG - chr2_4:51406982-51407001 Msa0333560:intron 50.0%
ACTAGAAGCTAAGTGACCGG+GGG + chr2_4:51407001-51407020 None:intergenic 50.0%
! ATGGTCTTAGTGCAGCTGCA+AGG - chr2_4:51407642-51407661 Msa0333560:intron 50.0%
AGTGCAGCTGCAAGGTTAGT+TGG - chr2_4:51407650-51407669 Msa0333560:intron 50.0%
CTAAAGCTGTCTGTCCTCCT+TGG - chr2_4:51407871-51407890 Msa0333560:intron 50.0%
TGTCTTGCATAATGCAGGGG+TGG - chr2_4:51408123-51408142 Msa0333560:intron 50.0%
CTTGGTGAGCTTCAGCTAGC+TGG - chr2_4:51403654-51403673 Msa0333560:intron 55.0%
AGCTCTTCCCTCTGCAGGAA+TGG - chr2_4:51406843-51406862 Msa0333560:intron 55.0%
GGGGGATTGGGTAACTCAAC+TGG + chr2_4:51406983-51407002 None:intergenic 55.0%
AGCTAAGTGACCGGGGGATT+GGG + chr2_4:51406995-51407014 None:intergenic 55.0%
AAGCTAAGTGACCGGGGGAT+TGG + chr2_4:51406996-51407015 None:intergenic 55.0%
ATGGCCTGCCCCCAATTCAT+TGG + chr2_4:51407818-51407837 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 51403153 51408979 51403153 ID=Msa0333560;Name=Msa0333560
chr2_4 mRNA 51403153 51408979 51403153 ID=Msa0333560-mRNA-1;Parent=Msa0333560;Name=Msa0333560-mRNA-1;_AED=0.08;_eAED=0.08;_QI=276|1|1|1|1|1|7|235|491
chr2_4 exon 51403153 51403519 51403153 ID=Msa0333560-mRNA-1:exon:15395;Parent=Msa0333560-mRNA-1
chr2_4 exon 51403874 51403992 51403874 ID=Msa0333560-mRNA-1:exon:15394;Parent=Msa0333560-mRNA-1
chr2_4 exon 51404090 51404328 51404090 ID=Msa0333560-mRNA-1:exon:15393;Parent=Msa0333560-mRNA-1
chr2_4 exon 51404469 51404525 51404469 ID=Msa0333560-mRNA-1:exon:15392;Parent=Msa0333560-mRNA-1
chr2_4 exon 51404608 51404694 51404608 ID=Msa0333560-mRNA-1:exon:15391;Parent=Msa0333560-mRNA-1
chr2_4 exon 51405263 51405807 51405263 ID=Msa0333560-mRNA-1:exon:15390;Parent=Msa0333560-mRNA-1
chr2_4 exon 51408407 51408979 51408407 ID=Msa0333560-mRNA-1:exon:15389;Parent=Msa0333560-mRNA-1
chr2_4 five_prime_UTR 51408704 51408979 51408704 ID=Msa0333560-mRNA-1:five_prime_utr;Parent=Msa0333560-mRNA-1
chr2_4 CDS 51408407 51408703 51408407 ID=Msa0333560-mRNA-1:cds;Parent=Msa0333560-mRNA-1
chr2_4 CDS 51405263 51405807 51405263 ID=Msa0333560-mRNA-1:cds;Parent=Msa0333560-mRNA-1
chr2_4 CDS 51404608 51404694 51404608 ID=Msa0333560-mRNA-1:cds;Parent=Msa0333560-mRNA-1
chr2_4 CDS 51404469 51404525 51404469 ID=Msa0333560-mRNA-1:cds;Parent=Msa0333560-mRNA-1
chr2_4 CDS 51404090 51404328 51404090 ID=Msa0333560-mRNA-1:cds;Parent=Msa0333560-mRNA-1
chr2_4 CDS 51403874 51403992 51403874 ID=Msa0333560-mRNA-1:cds;Parent=Msa0333560-mRNA-1
chr2_4 CDS 51403388 51403519 51403388 ID=Msa0333560-mRNA-1:cds;Parent=Msa0333560-mRNA-1
chr2_4 three_prime_UTR 51403153 51403387 51403153 ID=Msa0333560-mRNA-1:three_prime_utr;Parent=Msa0333560-mRNA-1
Gene Sequence

>Msa0333560

ATGGCAGCAAGTATCATTTCAGACGGCACAGAAACACCTCTATTACTGCCAACAACCCATGGTAATGGAAAACAAAACACGAGACCAGAAATGGAGGACAAATGGTGGAACAAAATTTTGGACATGGAGGAAGCCAAACATCAACTCATGTTTTCACTACCAATGATTTTTACAAACTTATTTTATTACTTGATTACTTTGGTTTCTGTTATGCTTGTTGGTCATCTTGGTGAGCTTCAGCTAGCTGGTGCTACTCTTGCTAATTCATGGTTTAGTGTCACTGGCGTAGCAGTTATGGTTGGCTTAAGTGGTGCACTAGAAACACTCTGTGGACAAGGATTTGGTGCAAAGGAATATCACATGTTGGGAATTTATCTACAAGGCTCTTGCATTATATCTTTTATTTTTTCCATCATTATATCAATTGTTTGGTTCTACACAGAACACATTCTAGTGTTCCTTCACCAATCACCAGACATTGCTAGAACAGCTTCACTCTATATGAAGTTTCTTATACCAGGATTATTTGCATATAGCGTCTTGCAAAACTTGTTGAGGTTTCTACAAACACAATCTGTAGTAATGCCACTGGTTATCCTTTCAGCTATCCCAACATTGATTCATGTTGGAATTGCATATGGATTTGTTCAATGGACAGGTTTGAGTTTCATAGGTGGACCAGTTGCAACTTCTATTTCACTATGGATATCTATGATATTGGTAGGTTTTTATGTCTTGTATGCAAAGAAGTTTGAGAATACATGGAGAGGATTTTCAATGGAGTCATTTCAGTACTTGTATACAAACATGAAACTAGCTCTTCCCTCTGCAGGAATGGTATGTTTGGAGTATTGGGCTTTTGAAATTTTGGTTTTCTTAGCTGGATTAATGCCTGACTCACAAATAACAATTTCATTGATTGCAATATGTGAAAACACAGAATTCATTGCTTACATGATCACTTATGGTCTTAGTGCAGCTGCAAGCACAAGGATTTCCAATGAATTGGGGGCAGGCCATCCTGAAAGAGCTAAACATGCAATGAGAGTCACTCTAAAGCTGTCTGTCCTCCTTGGATTCTGTTTTGTTTTGATGCTTTTGTTTGGTCATGATATATGGATTCAAATGTTTAGTGATAGTCCTATTATCAAAAAGGAGTTTGCTTCAATAACACCTTTGCTTGCTATTTCCATACTACTAGATTCTGTCCAAGGTGTCTTATCAGGGGTGGTTAGAGGATGTGGTTGGCAGCACTTGGTTGTTTATGTCAACCTTGCCACTTTTTATCTCATTGGTTTACCCATTTCATGTCTCCATGGATTTAAGACCAATTTGCATTATAAGGGTTTATGGATTGGTCTAATTTGTGGCCTAGTGTGTCAAATTGGGACACTCTTACTTTTGACAAGGCATGCCAAATGGACTAAACTGAATATCTCAGGGGACAGAGATAAAGACCAACTTATTGCTGTATAA
Protein sequence

>Msa0333560

MAASIISDGTETPLLLPTTHGNGKQNTRPEMEDKWWNKILDMEEAKHQLMFSLPMIFTNLFYYLITLVSVMLVGHLGELQLAGATLANSWFSVTGVAVMVGLSGALETLCGQGFGAKEYHMLGIYLQGSCIISFIFSIIISIVWFYTEHILVFLHQSPDIARTASLYMKFLIPGLFAYSVLQNLLRFLQTQSVVMPLVILSAIPTLIHVGIAYGFVQWTGLSFIGGPVATSISLWISMILVGFYVLYAKKFENTWRGFSMESFQYLYTNMKLALPSAGMVCLEYWAFEILVFLAGLMPDSQITISLIAICENTEFIAYMITYGLSAAASTRISNELGAGHPERAKHAMRVTLKLSVLLGFCFVLMLLFGHDIWIQMFSDSPIIKKEFASITPLLAISILLDSVQGVLSGVVRGCGWQHLVVYVNLATFYLIGLPISCLHGFKTNLHYKGLWIGLICGLVCQIGTLLLLTRHAKWTKLNISGDRDKDQLIAV*