Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727150 | XP_003614112.1 | 98.235 | 170 | 3 | 0 | 1 | 170 | 1 | 170 | 1.81e-118 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727150 | sp|Q9QZH3|PPIE_MOUSE | 55.238 | 105 | 42 | 2 | 9 | 113 | 5 | 104 | 3.41e-33 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727150 | A0A2Z6P753 | 98.235 | 170 | 3 | 0 | 1 | 170 | 1 | 170 | 8.63e-119 | 342 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0727150 | 0.811683 | 6.191674e-51 | -8.615850e-47 |
| Msa0017510 | Msa0727150 | 0.801421 | 9.076405e-49 | -8.615850e-47 |
| Msa0027260 | Msa0727150 | 0.829082 | 6.281022e-55 | -8.615850e-47 |
| Msa0035150 | Msa0727150 | 0.802784 | 4.758964e-49 | -8.615850e-47 |
| Msa0037700 | Msa0727150 | 0.816473 | 5.431867e-52 | -8.615850e-47 |
| Msa0051170 | Msa0727150 | 0.813449 | 2.545324e-51 | -8.615850e-47 |
| Msa0051270 | Msa0727150 | 0.804326 | 2.279391e-49 | -8.615850e-47 |
| Msa0064350 | Msa0727150 | 0.814731 | 1.327250e-51 | -8.615850e-47 |
| Msa0065950 | Msa0727150 | 0.832360 | 9.885666e-56 | -8.615850e-47 |
| Msa0069330 | Msa0727150 | 0.826774 | 2.255456e-54 | -8.615850e-47 |
| Msa0075170 | Msa0727150 | 0.804965 | 1.676946e-49 | -8.615850e-47 |
| Msa0078650 | Msa0727150 | 0.800270 | 1.559645e-48 | -8.615850e-47 |
| Msa0104550 | Msa0727150 | 0.825400 | 4.784851e-54 | -8.615850e-47 |
| Msa0692840 | Msa0727150 | 0.818736 | 1.677692e-52 | -8.615850e-47 |
| Msa0692940 | Msa0727150 | 0.809444 | 1.887020e-50 | -8.615850e-47 |
| Msa0697940 | Msa0727150 | 0.800533 | 1.378430e-48 | -8.615850e-47 |
| Msa0713820 | Msa0727150 | 0.837190 | 6.017060e-57 | -8.615850e-47 |
| Msa0722020 | Msa0727150 | 0.828869 | 7.074635e-55 | -8.615850e-47 |
| Msa0727150 | Msa0743720 | 0.807176 | 5.743110e-50 | -8.615850e-47 |
| Msa0727150 | Msa0756060 | 0.841653 | 4.171653e-58 | -8.615850e-47 |
| Msa0727150 | Msa0763020 | 0.829826 | 4.143031e-55 | -8.615850e-47 |
| Msa0727150 | Msa0763070 | 0.833215 | 6.061780e-56 | -8.615850e-47 |
| Msa0727150 | Msa0784380 | 0.803115 | 4.067199e-49 | -8.615850e-47 |
| Msa0727150 | Msa0801110 | 0.816782 | 4.629827e-52 | -8.615850e-47 |
| Msa0727150 | Msa0833310 | 0.808565 | 2.909752e-50 | -8.615850e-47 |
| Msa0727150 | Msa0835280 | 0.808495 | 3.012109e-50 | -8.615850e-47 |
| Msa0727150 | Msa0847080 | 0.829421 | 5.195917e-55 | -8.615850e-47 |
| Msa0727150 | Msa0877410 | 0.813168 | 2.934474e-51 | -8.615850e-47 |
| Msa0727150 | Msa0880140 | 0.801566 | 8.475911e-49 | -8.615850e-47 |
| Msa0727150 | Msa0902760 | 0.802986 | 4.322954e-49 | -8.615850e-47 |
| Msa0727150 | Msa0924470 | 0.802956 | 4.385772e-49 | -8.615850e-47 |
| Msa0727150 | Msa0967370 | 0.807027 | 6.176290e-50 | -8.615850e-47 |
| Msa0727150 | Msa0968590 | 0.802980 | 4.337254e-49 | -8.615850e-47 |
| Msa0727150 | Msa0970030 | 0.824036 | 1.003191e-53 | -8.615850e-47 |
| Msa0727150 | Msa1013040 | 0.812126 | 4.958298e-51 | -8.615850e-47 |
| Msa0727150 | Msa1013400 | 0.804959 | 1.681412e-49 | -8.615850e-47 |
| Msa0727150 | Msa1040400 | 0.800164 | 1.638698e-48 | -8.615850e-47 |
| Msa0727150 | Msa1060220 | 0.817029 | 4.076408e-52 | -8.615850e-47 |
| Msa0727150 | Msa1081930 | 0.803501 | 3.383375e-49 | -8.615850e-47 |
| Msa0727150 | Msa1093530 | 0.802816 | 4.687357e-49 | -8.615850e-47 |
| Msa0727150 | Msa1126510 | 0.818359 | 2.042393e-52 | -8.615850e-47 |
| Msa0727150 | Msa1134110 | 0.835754 | 1.395506e-56 | -8.615850e-47 |
| Msa0727150 | Msa1135470 | 0.806854 | 6.720072e-50 | -8.615850e-47 |
| Msa0727150 | Msa1169550 | 0.802732 | 4.878481e-49 | -8.615850e-47 |
| Msa0727150 | Msa1174040 | 0.822293 | 2.560128e-53 | -8.615850e-47 |
| Msa0727150 | Msa1190930 | 0.800354 | 1.499393e-48 | -8.615850e-47 |
| Msa0727150 | Msa1193290 | 0.802922 | 4.456991e-49 | -8.615850e-47 |
| Msa0727150 | Msa1201120 | 0.803500 | 3.384598e-49 | -8.615850e-47 |
| Msa0727150 | Msa1201560 | 0.809661 | 1.694343e-50 | -8.615850e-47 |
| Msa0727150 | Msa1204250 | 0.819084 | 1.398560e-52 | -8.615850e-47 |
| Msa0727150 | Msa1207270 | 0.817210 | 3.711902e-52 | -8.615850e-47 |
| Msa0727150 | Msa1244610 | 0.813240 | 2.828666e-51 | -8.615850e-47 |
| Msa0727150 | Msa1251160 | 0.828370 | 9.334364e-55 | -8.615850e-47 |
| Msa0727150 | Msa1253020 | 0.815691 | 8.121921e-52 | -8.615850e-47 |
| Msa0727150 | Msa1256470 | 0.818697 | 1.711736e-52 | -8.615850e-47 |
| Msa0727150 | Msa1294480 | 0.815234 | 1.026184e-51 | -8.615850e-47 |
| Msa0727150 | Msa1305340 | 0.803531 | 3.334902e-49 | -8.615850e-47 |
| Msa0727150 | Msa1305710 | 0.812864 | 3.420130e-51 | -8.615850e-47 |
| Msa0727150 | Msa1315870 | 0.811346 | 7.329383e-51 | -8.615850e-47 |
| Msa0727150 | Msa1333110 | 0.819014 | 1.450218e-52 | -8.615850e-47 |
| Msa0727150 | Msa1340020 | 0.812071 | 5.098313e-51 | -8.615850e-47 |
| Msa0727150 | Msa1345220 | 0.809787 | 1.591740e-50 | -8.615850e-47 |
| Msa0727150 | Msa1348950 | 0.805345 | 1.396451e-49 | -8.615850e-47 |
| Msa0727150 | Msa1356440 | 0.823454 | 1.373153e-53 | -8.615850e-47 |
| Msa0727150 | Msa1367590 | 0.842371 | 2.692982e-58 | -8.615850e-47 |
| Msa0727150 | Msa1370070 | -0.819869 | 9.260192e-53 | -8.615850e-47 |
| Msa0727150 | Msa1379760 | 0.800064 | 1.717137e-48 | -8.615850e-47 |
| Msa0727150 | Msa1411700 | 0.816840 | 4.494289e-52 | -8.615850e-47 |
| Msa0727150 | Msa1451550 | 0.815306 | 9.891454e-52 | -8.615850e-47 |
| Msa0126370 | Msa0727150 | 0.806183 | 9.309906e-50 | -8.615850e-47 |
| Msa0128860 | Msa0727150 | 0.802121 | 6.519802e-49 | -8.615850e-47 |
| Msa0148100 | Msa0727150 | 0.819501 | 1.123660e-52 | -8.615850e-47 |
| Msa0150570 | Msa0727150 | 0.805701 | 1.175699e-49 | -8.615850e-47 |
| Msa0157290 | Msa0727150 | 0.802100 | 6.585667e-49 | -8.615850e-47 |
| Msa0174730 | Msa0727150 | 0.803439 | 3.483521e-49 | -8.615850e-47 |
| Msa0184020 | Msa0727150 | 0.801016 | 1.098368e-48 | -8.615850e-47 |
| Msa0199880 | Msa0727150 | 0.812702 | 3.710949e-51 | -8.615850e-47 |
| Msa0205510 | Msa0727150 | 0.811644 | 6.315658e-51 | -8.615850e-47 |
| Msa0212930 | Msa0727150 | 0.803111 | 4.074892e-49 | -8.615850e-47 |
| Msa0220250 | Msa0727150 | 0.809988 | 1.441290e-50 | -8.615850e-47 |
| Msa0237410 | Msa0727150 | 0.800449 | 1.433709e-48 | -8.615850e-47 |
| Msa0380300 | Msa0727150 | 0.800609 | 1.330364e-48 | -8.615850e-47 |
| Msa0395820 | Msa0727150 | 0.801404 | 9.151585e-49 | -8.615850e-47 |
| Msa0402820 | Msa0727150 | 0.805343 | 1.397480e-49 | -8.615850e-47 |
| Msa0241800 | Msa0727150 | 0.805909 | 1.063319e-49 | -8.615850e-47 |
| Msa0242230 | Msa0727150 | 0.815191 | 1.049252e-51 | -8.615850e-47 |
| Msa0261550 | Msa0727150 | 0.802960 | 4.377922e-49 | -8.615850e-47 |
| Msa0273900 | Msa0727150 | 0.801222 | 9.968102e-49 | -8.615850e-47 |
| Msa0280610 | Msa0727150 | 0.804098 | 2.542726e-49 | -8.615850e-47 |
| Msa0284820 | Msa0727150 | 0.804059 | 2.589996e-49 | -8.615850e-47 |
| Msa0333560 | Msa0727150 | 0.800616 | 1.325427e-48 | -8.615850e-47 |
| Msa0485340 | Msa0727150 | 0.809656 | 1.699160e-50 | -8.615850e-47 |
| Msa0524500 | Msa0727150 | 0.824991 | 5.979816e-54 | -8.615850e-47 |
| Msa0542290 | Msa0727150 | 0.806847 | 6.742914e-50 | -8.615850e-47 |
| Msa0551950 | Msa0727150 | 0.806230 | 9.098565e-50 | -8.615850e-47 |
| Msa0575470 | Msa0727150 | 0.834323 | 3.202310e-56 | -8.615850e-47 |
| Msa0585960 | Msa0727150 | 0.800777 | 1.228999e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727150 | MtrunA17_Chr5g0419351 | 98.235 | 170 | 3 | 0 | 1 | 170 | 1 | 170 | 1.66e-122 | 342 |
| Msa0727150 | MtrunA17_Chr3g0119311 | 45.238 | 84 | 45 | 1 | 10 | 93 | 36 | 118 | 5.58e-16 | 70.5 |
| Msa0727150 | MtrunA17_Chr7g0219021 | 44.000 | 75 | 42 | 0 | 12 | 86 | 42 | 116 | 3.11e-15 | 70.9 |
| Msa0727150 | MtrunA17_Chr4g0061451 | 36.905 | 84 | 53 | 0 | 3 | 86 | 35 | 118 | 4.60e-14 | 68.2 |
| Msa0727150 | MtrunA17_Chr3g0121631 | 34.884 | 86 | 55 | 1 | 1 | 86 | 27 | 111 | 2.01e-13 | 63.9 |
| Msa0727150 | MtrunA17_Chr1g0210241 | 37.647 | 85 | 53 | 0 | 4 | 88 | 1 | 85 | 5.57e-13 | 65.1 |
| Msa0727150 | MtrunA17_Chr4g0035031 | 42.667 | 75 | 43 | 0 | 12 | 86 | 10 | 84 | 2.33e-12 | 62.4 |
| Msa0727150 | MtrunA17_Chr7g0266751 | 37.179 | 78 | 49 | 0 | 12 | 89 | 34 | 111 | 1.50e-11 | 58.9 |
| Msa0727150 | MtrunA17_Chr3g0086861 | 38.667 | 75 | 46 | 0 | 12 | 86 | 46 | 120 | 2.49e-11 | 60.8 |
| Msa0727150 | MtrunA17_Chr4g0035001 | 41.333 | 75 | 44 | 0 | 12 | 86 | 8 | 82 | 3.01e-11 | 58.5 |
| Msa0727150 | MtrunA17_Chr4g0035051 | 40.000 | 75 | 45 | 0 | 12 | 86 | 10 | 84 | 3.47e-11 | 57.4 |
| Msa0727150 | MtrunA17_Chr4g0050781 | 36.709 | 79 | 50 | 0 | 12 | 90 | 9 | 87 | 3.89e-11 | 59.3 |
| Msa0727150 | MtrunA17_Chr8g0393061 | 37.975 | 79 | 49 | 0 | 10 | 88 | 211 | 289 | 5.91e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727150 | AT1G13690.1 | 81.595 | 163 | 29 | 1 | 9 | 170 | 12 | 174 | 1.42e-97 | 280 |
| Msa0727150 | AT5G61030.2 | 45.333 | 75 | 41 | 0 | 12 | 86 | 42 | 116 | 1.18e-16 | 75.9 |
| Msa0727150 | AT5G61030.1 | 45.333 | 75 | 41 | 0 | 12 | 86 | 42 | 116 | 1.18e-16 | 75.9 |
| Msa0727150 | AT3G08000.1 | 43.373 | 83 | 46 | 1 | 12 | 94 | 43 | 124 | 1.56e-16 | 72.4 |
| Msa0727150 | AT4G39260.3 | 42.529 | 87 | 48 | 1 | 12 | 98 | 8 | 92 | 7.63e-15 | 66.6 |
| Msa0727150 | AT4G13850.4 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 1.93e-13 | 63.9 |
| Msa0727150 | AT4G39260.2 | 44.000 | 75 | 42 | 0 | 12 | 86 | 8 | 82 | 2.06e-13 | 63.9 |
| Msa0727150 | AT4G13850.3 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 2.23e-13 | 64.3 |
| Msa0727150 | AT4G13850.2 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 2.68e-13 | 64.3 |
| Msa0727150 | AT4G13850.1 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 2.96e-13 | 64.3 |
| Msa0727150 | AT4G39260.1 | 44.000 | 75 | 42 | 0 | 12 | 86 | 8 | 82 | 5.00e-13 | 63.9 |
| Msa0727150 | AT1G74230.1 | 38.636 | 88 | 50 | 2 | 2 | 86 | 23 | 109 | 5.31e-13 | 65.5 |
| Msa0727150 | AT3G23830.2 | 41.333 | 75 | 44 | 0 | 12 | 86 | 37 | 111 | 1.39e-12 | 62.0 |
| Msa0727150 | AT3G23830.1 | 41.333 | 75 | 44 | 0 | 12 | 86 | 37 | 111 | 1.39e-12 | 62.0 |
| Msa0727150 | AT2G21660.2 | 39.286 | 84 | 51 | 0 | 3 | 86 | 1 | 84 | 3.41e-12 | 61.6 |
| Msa0727150 | AT5G04280.1 | 38.202 | 89 | 52 | 1 | 1 | 89 | 1 | 86 | 3.64e-12 | 63.5 |
| Msa0727150 | AT2G21660.1 | 39.286 | 84 | 51 | 0 | 3 | 86 | 1 | 84 | 4.61e-12 | 61.6 |
| Msa0727150 | AT4G13860.1 | 38.889 | 72 | 44 | 0 | 12 | 83 | 5 | 76 | 1.74e-11 | 57.8 |
| Msa0727150 | AT1G60650.2 | 35.714 | 84 | 54 | 0 | 6 | 89 | 8 | 91 | 6.64e-11 | 59.7 |
| Msa0727150 | AT1G60650.1 | 35.714 | 84 | 54 | 0 | 6 | 89 | 8 | 91 | 6.64e-11 | 59.7 |
Find 76 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAATATATTCATATTATT+TGG | 0.182401 | 5_1:-29353873 | None:intergenic |
| TGCACTTCCTGAAAAGATTA+AGG | 0.202056 | 5_1:+29354352 | Msa0727150:CDS |
| ATTTCAAACAAAACATTAAA+AGG | 0.208687 | 5_1:+29353984 | Msa0727150:five_prime_UTR |
| CTATACTGTTTCATAATCTA+TGG | 0.296043 | 5_1:-29356627 | None:intergenic |
| TTTCAGTTCAGTTAAGAGTT+AGG | 0.312328 | 5_1:-29354069 | None:intergenic |
| AGATTATGAAACAGTATAGA+TGG | 0.355396 | 5_1:+29356631 | Msa0727150:three_prime_UTR |
| TTCCGCCGCCATGGATAATA+TGG | 0.365330 | 5_1:+29354289 | Msa0727150:CDS |
| TTTCTCTCCTTCCCGCTCTT+CGG | 0.397348 | 5_1:-29356370 | None:intergenic |
| ATTCTTCAGAATTCTCAGTT+TGG | 0.398322 | 5_1:-29356733 | None:intergenic |
| TTCAGTTCAGTTAAGAGTTA+GGG | 0.408598 | 5_1:-29354068 | None:intergenic |
| CGGAAGCATCTTCCCTTTCA+AGG | 0.410203 | 5_1:-29354271 | None:intergenic |
| CAGCTTTACTCTCTGCTTCG+AGG | 0.413163 | 5_1:-29356308 | None:intergenic |
| TTTGGGCGGATGCGGATACT+TGG | 0.419214 | 5_1:+29356250 | Msa0727150:CDS |
| AAAATAAAATAAAATAAAGT+TGG | 0.419620 | 5_1:+29354031 | Msa0727150:five_prime_UTR |
| ACGCAGAAGCATCGTTCCTT+CGG | 0.435942 | 5_1:+29354236 | Msa0727150:CDS |
| GCACTTCCTGAAAAGATTAA+GGG | 0.436291 | 5_1:+29354353 | Msa0727150:CDS |
| CGTCGGTGGTTTAGCGGAAG+AGG | 0.445488 | 5_1:+29354136 | Msa0727150:CDS |
| GTTGTTGCAAATTGAGATCA+AGG | 0.446045 | 5_1:+29356441 | Msa0727150:exon |
| GAAGCAAGTAGCCGAAGAGC+GGG | 0.453125 | 5_1:+29356359 | Msa0727150:CDS |
| AACGATGCTTCTGCGTTGCT+TGG | 0.454782 | 5_1:-29354229 | None:intergenic |
| CTTCGTGACTTTCCTTGAAA+GGG | 0.466861 | 5_1:+29354259 | Msa0727150:CDS |
| GCTTCGTGACTTTCCTTGAA+AGG | 0.478500 | 5_1:+29354258 | Msa0727150:CDS |
| ATCAGAGGGAGCACTTGGTA+AGG | 0.483404 | 5_1:+29356532 | Msa0727150:three_prime_UTR |
| TCTCTACGTCGGTGGTTTAG+CGG | 0.487229 | 5_1:+29354130 | Msa0727150:CDS |
| AGAGAGTAAAGCTGCAATGC+TGG | 0.489333 | 5_1:+29356317 | Msa0727150:CDS |
| AGGTTTGTTCAACATAAAGA+TGG | 0.490279 | 5_1:+29356492 | Msa0727150:three_prime_UTR |
| CATACCCTTCGGAGATATCA+AGG | 0.495043 | 5_1:+29354187 | Msa0727150:CDS |
| TGAGATCAAAGATGATCCTA+TGG | 0.502753 | 5_1:+29356401 | Msa0727150:CDS |
| ATGGATGGTGCTGAACTATA+TGG | 0.503881 | 5_1:+29354308 | Msa0727150:CDS |
| AAGGACAATCCTATGGCAAA+AGG | 0.507785 | 5_1:+29356460 | Msa0727150:three_prime_UTR |
| CATGCGGCGTTCATACCCTT+CGG | 0.509469 | 5_1:+29354176 | Msa0727150:CDS |
| TGTAAATCAGAGGGAGCACT+TGG | 0.528749 | 5_1:+29356527 | Msa0727150:three_prime_UTR |
| TGAGATCAAGGACAATCCTA+TGG | 0.532998 | 5_1:+29356453 | Msa0727150:exon |
| GATTATGAAACAGTATAGAT+GGG | 0.535216 | 5_1:+29356632 | Msa0727150:three_prime_UTR |
| AAGATTAAGGGCGGTGAACA+AGG | 0.535741 | 5_1:+29354365 | Msa0727150:CDS |
| TTCTGCGTTGCTTGGTCAAG+CGG | 0.538224 | 5_1:-29354221 | None:intergenic |
| CAACAATGGCGATGATGCAA+GGG | 0.542406 | 5_1:+29354093 | Msa0727150:exon |
| TTAAGGGCGGTGAACAAGGA+TGG | 0.546327 | 5_1:+29354369 | Msa0727150:CDS |
| GGAAGATGCTTCCGCCGCCA+TGG | 0.549924 | 5_1:+29354280 | Msa0727150:CDS |
| GCAACAATGGCGATGATGCA+AGG | 0.550286 | 5_1:+29354092 | Msa0727150:exon |
| CACGTCCTTGATATCTCCGA+AGG | 0.553071 | 5_1:-29354192 | None:intergenic |
| TAACAATACAAGTGAGGCAA+TGG | 0.555294 | 5_1:-29356694 | None:intergenic |
| TCTGCTTCAGCCCTTGCCAT+AGG | 0.559803 | 5_1:-29356417 | None:intergenic |
| ATCCATATTATCCATGGCGG+CGG | 0.566198 | 5_1:-29354291 | None:intergenic |
| AACTTGTATTTGTAAATCAG+AGG | 0.572166 | 5_1:+29356517 | Msa0727150:three_prime_UTR |
| TAAGGGCGGTGAACAAGGAT+GGG | 0.577061 | 5_1:+29354370 | Msa0727150:CDS |
| AGCACCATCCATATTATCCA+TGG | 0.577845 | 5_1:-29354297 | None:intergenic |
| AGGGTATGAACGCCGCATGA+AGG | 0.578831 | 5_1:-29354172 | None:intergenic |
| TGTCAGTTGAATCTAATGTA+TGG | 0.580777 | 5_1:+29356592 | Msa0727150:three_prime_UTR |
| GGAAGCAAGTAGCCGAAGAG+CGG | 0.585397 | 5_1:+29356358 | Msa0727150:CDS |
| TCAGAGGGAGCACTTGGTAA+GGG | 0.589642 | 5_1:+29356533 | Msa0727150:three_prime_UTR |
| AATAAAGTTGGTAATTGCAG+AGG | 0.590630 | 5_1:+29354043 | Msa0727150:five_prime_UTR |
| CAAGTAGCCGAAGAGCGGGA+AGG | 0.590737 | 5_1:+29356363 | Msa0727150:CDS |
| GGTATGTGAGCAATTGAAGT+GGG | 0.593620 | 5_1:+29353948 | Msa0727150:five_prime_UTR |
| GGTTCATTTAAAGAATGTGT+AGG | 0.596890 | 5_1:+29356810 | Msa0727150:three_prime_UTR |
| GCCGCCATGGATAATATGGA+TGG | 0.598509 | 5_1:+29354293 | Msa0727150:CDS |
| TGGCTGCTGAAGAACTGCAC+AGG | 0.598798 | 5_1:+29356337 | Msa0727150:CDS |
| TGAACGACAGCAACAAGAAG+AGG | 0.599680 | 5_1:+29356275 | Msa0727150:CDS |
| ATACAAGTGAGGCAATGGAC+AGG | 0.601816 | 5_1:-29356689 | None:intergenic |
| TATGGCAAGGGCTGAAGCAG+AGG | 0.602950 | 5_1:+29356419 | Msa0727150:CDS |
| CAAAGATGATCCTATGGCAA+GGG | 0.603906 | 5_1:+29356407 | Msa0727150:CDS |
| TCAAAGATGATCCTATGGCA+AGG | 0.607783 | 5_1:+29356406 | Msa0727150:CDS |
| AACTGAACTGAAAGCAACAA+TGG | 0.607905 | 5_1:+29354079 | Msa0727150:exon |
| ACTTGTATTTGTAAATCAGA+GGG | 0.609336 | 5_1:+29356518 | Msa0727150:three_prime_UTR |
| ATGGCAAAAGGCTGAAGCAG+AGG | 0.619091 | 5_1:+29356472 | Msa0727150:three_prime_UTR |
| AAGGAAAGTCACGAAGCCGA+AGG | 0.646362 | 5_1:-29354252 | None:intergenic |
| ACGTCCTTGATATCTCCGAA+GGG | 0.665056 | 5_1:-29354191 | None:intergenic |
| AACAATGGCGATGATGCAAG+GGG | 0.670281 | 5_1:+29354094 | Msa0727150:exon |
| GAACGAATCAATCCTTCATG+CGG | 0.674079 | 5_1:+29354160 | Msa0727150:CDS |
| AAGAACACTCTCTACGTCGG+TGG | 0.677653 | 5_1:+29354122 | Msa0727150:CDS |
| ATTATGAAACAGTATAGATG+GGG | 0.678443 | 5_1:+29356633 | Msa0727150:three_prime_UTR |
| ACCATCCATATTATCCATGG+CGG | 0.687486 | 5_1:-29354294 | None:intergenic |
| CTTCCTGAAAAGATTAAGGG+CGG | 0.691139 | 5_1:+29354356 | Msa0727150:CDS |
| CAAAAGAACACTCTCTACGT+CGG | 0.696745 | 5_1:+29354119 | Msa0727150:CDS |
| GGGTATGTGAGCAATTGAAG+TGG | 0.702513 | 5_1:+29353947 | Msa0727150:five_prime_UTR |
| GTATGTGAGCAATTGAAGTG+GGG | 0.720583 | 5_1:+29353949 | Msa0727150:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATGAGATATATAAAA+AGG | + | chr5_1:29354535-29354554 | Msa0727150:intron | 10.0% |
| !! | TATTATGAGATATATAAAAA+GGG | + | chr5_1:29354536-29354555 | Msa0727150:intron | 10.0% |
| !!! | AAACTTATATTTATTTCTTT+AGG | - | chr5_1:29354878-29354897 | None:intergenic | 10.0% |
| !!! | TTTATTTTGTTAAATTGATT+CGG | + | chr5_1:29355292-29355311 | Msa0727150:intron | 10.0% |
| !!! | CATAAATACTTTATTTTTTT+TGG | + | chr5_1:29355499-29355518 | Msa0727150:intron | 10.0% |
| !! | ATTTCAAACAAAACATTAAA+AGG | + | chr5_1:29353984-29354003 | Msa0727150:five_prime_UTR | 15.0% |
| !!! | GACAAATTTTGAAAAAAATT+TGG | + | chr5_1:29354813-29354832 | Msa0727150:intron | 15.0% |
| !!! | AAATTGAGTTTGAAATAAAT+AGG | + | chr5_1:29355318-29355337 | Msa0727150:intron | 15.0% |
| !!! | TAAGTTGAAAAATTAATACT+AGG | - | chr5_1:29355404-29355423 | None:intergenic | 15.0% |
| !!! | AAATACTTTATTTTTTTTGG+TGG | + | chr5_1:29355502-29355521 | Msa0727150:intron | 15.0% |
| !!! | GAAAGTGAAAAATTATTTTA+AGG | + | chr5_1:29355616-29355635 | Msa0727150:intron | 15.0% |
| !!! | TGTATTTTTGGTTATTTGAT+GGG | + | chr5_1:29353927-29353946 | Msa0727150:five_prime_UTR | 20.0% |
| !!! | TTTTTCTTTGATGTGAAATT+GGG | - | chr5_1:29354010-29354029 | None:intergenic | 20.0% |
| !!! | ATTTTTCTTTGATGTGAAAT+TGG | - | chr5_1:29354011-29354030 | None:intergenic | 20.0% |
| !! | AAGAGAATTAAAGATTTACT+TGG | - | chr5_1:29354404-29354423 | None:intergenic | 20.0% |
| !!! | TTTTGTTGTGTTTATGTTTA+GGG | + | chr5_1:29354450-29354469 | Msa0727150:intron | 20.0% |
| !!! | ACAAAAACAAGTTTGTTATT+AGG | + | chr5_1:29355046-29355065 | Msa0727150:intron | 20.0% |
| !!! | CAAAAACAAGTTTGTTATTA+GGG | + | chr5_1:29355047-29355066 | Msa0727150:intron | 20.0% |
| !!! | AAAAACAAGTTTGTTATTAG+GGG | + | chr5_1:29355048-29355067 | Msa0727150:intron | 20.0% |
| !!! | ATATTAGTAGTTATTTTGTG+AGG | + | chr5_1:29355145-29355164 | Msa0727150:intron | 20.0% |
| !!! | TATTAGTAGTTATTTTGTGA+GGG | + | chr5_1:29355146-29355165 | Msa0727150:intron | 20.0% |
| !!! | ATCAGTTTTAATCCTTTTAA+AGG | + | chr5_1:29355958-29355977 | Msa0727150:intron | 20.0% |
| !!! | AAAAAATTACAAGTTTTACC+TGG | + | chr5_1:29356106-29356125 | Msa0727150:intron | 20.0% |
| !! | ATTTCTTAAGCTATATATGA+AGG | + | chr5_1:29356149-29356168 | Msa0727150:intron | 20.0% |
| !!! | TTTGTTTCAATTTTCAGTTT+GGG | + | chr5_1:29356233-29356252 | Msa0727150:intron | 20.0% |
| !!! | GTGTATTTTTGGTTATTTGA+TGG | + | chr5_1:29353926-29353945 | Msa0727150:five_prime_UTR | 25.0% |
| !!! | GTTTTGTTGTGTTTATGTTT+AGG | + | chr5_1:29354449-29354468 | Msa0727150:intron | 25.0% |
| !!! | AGGATTGTATTAGGTTTTAT+GGG | + | chr5_1:29354477-29354496 | Msa0727150:intron | 25.0% |
| !!! | ATTGGTTCTATTTAGTTTGT+AGG | + | chr5_1:29354507-29354526 | Msa0727150:intron | 25.0% |
| !!! | CTTGATGATTTTATGTTGAA+TGG | + | chr5_1:29354559-29354578 | Msa0727150:intron | 25.0% |
| ! | ATAGTTTGAACAAAATGTGA+TGG | + | chr5_1:29354704-29354723 | Msa0727150:intron | 25.0% |
| ! | TAACTGCTAATTGACAATTA+TGG | - | chr5_1:29354926-29354945 | None:intergenic | 25.0% |
| !! | TAATATGTGTCTTTAGTTCA+GGG | + | chr5_1:29355091-29355110 | Msa0727150:intron | 25.0% |
| !!! | TGAAACTGTTTTTCTTTTAC+AGG | + | chr5_1:29355119-29355138 | Msa0727150:intron | 25.0% |
| !! | GAGTTTGAAATAAATAGGTT+TGG | + | chr5_1:29355323-29355342 | Msa0727150:intron | 25.0% |
| !!! | TACTTTATTTTTTTTGGTGG+TGG | + | chr5_1:29355505-29355524 | Msa0727150:intron | 25.0% |
| ! | ATATGCAATAATGTTGTCTA+AGG | - | chr5_1:29355717-29355736 | None:intergenic | 25.0% |
| ! | ACAACATTATTGCATATTGA+AGG | + | chr5_1:29355720-29355739 | Msa0727150:intron | 25.0% |
| ! | TAATTATCCATCATGAATGA+TGG | - | chr5_1:29355804-29355823 | None:intergenic | 25.0% |
| !!! | AAAAAGCATTTAACATAACC+AGG | - | chr5_1:29355901-29355920 | None:intergenic | 25.0% |
| ! | TAAAATGATCTCAACTTTCT+TGG | + | chr5_1:29356179-29356198 | Msa0727150:intron | 25.0% |
| !!! | GTTCAATTTTTTCACTTATG+TGG | + | chr5_1:29356201-29356220 | Msa0727150:intron | 25.0% |
| !! | GTTTGTTTCAATTTTCAGTT+TGG | + | chr5_1:29356232-29356251 | Msa0727150:intron | 25.0% |
| ! | AACTTGTATTTGTAAATCAG+AGG | + | chr5_1:29356517-29356536 | Msa0727150:three_prime_UTR | 25.0% |
| ! | ACTTGTATTTGTAAATCAGA+GGG | + | chr5_1:29356518-29356537 | Msa0727150:three_prime_UTR | 25.0% |
| ! | CTATACTGTTTCATAATCTA+TGG | - | chr5_1:29356630-29356649 | None:intergenic | 25.0% |
| ! | AGATTATGAAACAGTATAGA+TGG | + | chr5_1:29356631-29356650 | Msa0727150:three_prime_UTR | 25.0% |
| ! | GATTATGAAACAGTATAGAT+GGG | + | chr5_1:29356632-29356651 | Msa0727150:three_prime_UTR | 25.0% |
| ! | ATTATGAAACAGTATAGATG+GGG | + | chr5_1:29356633-29356652 | Msa0727150:three_prime_UTR | 25.0% |
| !!! | GAATTTTAACAATACAAGTG+AGG | - | chr5_1:29356703-29356722 | None:intergenic | 25.0% |
| !! | TCTGATAGTTTTTACTTTGA+AGG | + | chr5_1:29356784-29356803 | Msa0727150:three_prime_UTR | 25.0% |
| AAAAATACACTTGCTCTTGT+TGG | - | chr5_1:29353916-29353935 | None:intergenic | 30.0% | |
| ! | AACAAGAGCAAGTGTATTTT+TGG | + | chr5_1:29353915-29353934 | Msa0727150:five_prime_UTR | 30.0% |
| !! | AATAAAGTTGGTAATTGCAG+AGG | + | chr5_1:29354043-29354062 | Msa0727150:five_prime_UTR | 30.0% |
| TTCAGTTCAGTTAAGAGTTA+GGG | - | chr5_1:29354071-29354090 | None:intergenic | 30.0% | |
| TTTCAGTTCAGTTAAGAGTT+AGG | - | chr5_1:29354072-29354091 | None:intergenic | 30.0% | |
| ! | GAGGATTGTATTAGGTTTTA+TGG | + | chr5_1:29354476-29354495 | Msa0727150:intron | 30.0% |
| TTACTGAACTTAAACATGCT+TGG | + | chr5_1:29354601-29354620 | Msa0727150:intron | 30.0% | |
| !! | AAATGTGATGGTTTTGCAAT+AGG | + | chr5_1:29354716-29354735 | Msa0727150:intron | 30.0% |
| AAATTTGTCACGAAAACAGA+AGG | - | chr5_1:29354802-29354821 | None:intergenic | 30.0% | |
| AATTTGGATTTGAGAAGTCA+TGG | + | chr5_1:29354829-29354848 | Msa0727150:intron | 30.0% | |
| TACTGAATAGCGTATTACAA+AGG | - | chr5_1:29354903-29354922 | None:intergenic | 30.0% | |
| ! | GTAATATGTGTCTTTAGTTC+AGG | + | chr5_1:29355090-29355109 | Msa0727150:intron | 30.0% |
| AGAGAAATGTTTGTAGCTAA+TGG | + | chr5_1:29355173-29355192 | Msa0727150:intron | 30.0% | |
| !! | ATATAACTCATTTGGTGTCT+CGG | + | chr5_1:29355214-29355233 | Msa0727150:intron | 30.0% |
| ! | TTTTTCTCTCAAAGCAAGTA+TGG | + | chr5_1:29355364-29355383 | Msa0727150:intron | 30.0% |
| ! | TTTTCTCTCAAAGCAAGTAT+GGG | + | chr5_1:29355365-29355384 | Msa0727150:intron | 30.0% |
| ! | CTTTTATACGAGAAAAACCA+AGG | + | chr5_1:29355436-29355455 | Msa0727150:intron | 30.0% |
| AATTATTCAACTCCATACCT+TGG | - | chr5_1:29355456-29355475 | None:intergenic | 30.0% | |
| !!! | TTATTTTTTTTGGTGGTGGT+TGG | + | chr5_1:29355509-29355528 | Msa0727150:intron | 30.0% |
| !!! | TATTTTTTTTGGTGGTGGTT+GGG | + | chr5_1:29355510-29355529 | Msa0727150:intron | 30.0% |
| TGGACAATGCATAATATATG+CGG | - | chr5_1:29355551-29355570 | None:intergenic | 30.0% | |
| CATCATGAACTATATCATAC+AGG | - | chr5_1:29355836-29355855 | None:intergenic | 30.0% | |
| ATCAGTATCACTCCTTTAAA+AGG | - | chr5_1:29355973-29355992 | None:intergenic | 30.0% | |
| !! | TCTTTGTTTATCCGATGTTT+TGG | + | chr5_1:29356037-29356056 | Msa0727150:intron | 30.0% |
| TTAAGAAGCAACCAAAACAT+CGG | - | chr5_1:29356051-29356070 | None:intergenic | 30.0% | |
| ! | AGGTTTGTTCAACATAAAGA+TGG | + | chr5_1:29356492-29356511 | Msa0727150:three_prime_UTR | 30.0% |
| TGTCAGTTGAATCTAATGTA+TGG | + | chr5_1:29356592-29356611 | Msa0727150:three_prime_UTR | 30.0% | |
| ATTCTTCAGAATTCTCAGTT+TGG | - | chr5_1:29356736-29356755 | None:intergenic | 30.0% | |
| !! | TAGTTTTTACTTTGAAGGCA+TGG | + | chr5_1:29356789-29356808 | Msa0727150:three_prime_UTR | 30.0% |
| AACTGAACTGAAAGCAACAA+TGG | + | chr5_1:29354079-29354098 | Msa0727150:exon | 35.0% | |
| TGCACTTCCTGAAAAGATTA+AGG | + | chr5_1:29354352-29354371 | Msa0727150:CDS | 35.0% | |
| GCACTTCCTGAAAAGATTAA+GGG | + | chr5_1:29354353-29354372 | Msa0727150:CDS | 35.0% | |
| ! | GTGTTTATGTTTAGGGTTTG+AGG | + | chr5_1:29354457-29354476 | Msa0727150:intron | 35.0% |
| TAGGGTTTGAGGATTGTATT+AGG | + | chr5_1:29354468-29354487 | Msa0727150:intron | 35.0% | |
| !! | GTATTAGGTTTTATGGGTAG+AGG | + | chr5_1:29354483-29354502 | Msa0727150:intron | 35.0% |
| TCTCTTGCAATGTTGTCAAA+TGG | + | chr5_1:29354651-29354670 | Msa0727150:intron | 35.0% | |
| AGGACAAAACCTAGATCAAT+AGG | + | chr5_1:29354736-29354755 | Msa0727150:intron | 35.0% | |
| ACCATATTGAAAAGCAGCTA+AGG | - | chr5_1:29354769-29354788 | None:intergenic | 35.0% | |
| TGGAAGTTAAGAATCATACG+AGG | + | chr5_1:29354849-29354868 | Msa0727150:intron | 35.0% | |
| AGTTATATCATTGTACGTCG+CGG | + | chr5_1:29354941-29354960 | Msa0727150:intron | 35.0% | |
| CTATCTTCGATTGACAATGT+TGG | + | chr5_1:29354988-29355007 | Msa0727150:intron | 35.0% | |
| ! | CAGAGTATCCTAATACTTAG+TGG | - | chr5_1:29355021-29355040 | None:intergenic | 35.0% |
| ATGAGTTATATGCAAGTCCA+AGG | - | chr5_1:29355205-29355224 | None:intergenic | 35.0% | |
| GGACTTGCATATAACTCATT+TGG | + | chr5_1:29355206-29355225 | Msa0727150:intron | 35.0% | |
| TTTCTCTCAAAGCAAGTATG+GGG | + | chr5_1:29355366-29355385 | Msa0727150:intron | 35.0% | |
| ATACGAGAAAAACCAAGGTA+TGG | + | chr5_1:29355441-29355460 | Msa0727150:intron | 35.0% | |
| AATGCATAATATATGCGGTC+CGG | - | chr5_1:29355546-29355565 | None:intergenic | 35.0% | |
| TAAGGCATAGTCAATTCTGA+AGG | + | chr5_1:29355634-29355653 | Msa0727150:intron | 35.0% | |
| GAACTATATCATACAGGCAA+TGG | - | chr5_1:29355830-29355849 | None:intergenic | 35.0% | |
| ATGTATCTGCACAATTATGC+TGG | + | chr5_1:29355853-29355872 | Msa0727150:intron | 35.0% | |
| TGTATCTGCACAATTATGCT+GGG | + | chr5_1:29355854-29355873 | Msa0727150:intron | 35.0% | |
| ! | ATACTGATGAAAGAGCATGA+TGG | + | chr5_1:29355985-29356004 | Msa0727150:intron | 35.0% |
| !! | GAATTTTTCAAATCTCAGCC+AGG | - | chr5_1:29356127-29356146 | None:intergenic | 35.0% |
| ! | GTTTCAATTTTCAGTTTGGG+CGG | + | chr5_1:29356236-29356255 | Msa0727150:intron | 35.0% |
| TGAGATCAAAGATGATCCTA+TGG | + | chr5_1:29356401-29356420 | Msa0727150:CDS | 35.0% | |
| GTTGTTGCAAATTGAGATCA+AGG | + | chr5_1:29356441-29356460 | Msa0727150:exon | 35.0% | |
| TAACAATACAAGTGAGGCAA+TGG | - | chr5_1:29356697-29356716 | None:intergenic | 35.0% | |
| GGTATGTGAGCAATTGAAGT+GGG | + | chr5_1:29353948-29353967 | Msa0727150:five_prime_UTR | 40.0% | |
| GTATGTGAGCAATTGAAGTG+GGG | + | chr5_1:29353949-29353968 | Msa0727150:five_prime_UTR | 40.0% | |
| CAAAAGAACACTCTCTACGT+CGG | + | chr5_1:29354119-29354138 | Msa0727150:CDS | 40.0% | |
| GAACGAATCAATCCTTCATG+CGG | + | chr5_1:29354160-29354179 | Msa0727150:CDS | 40.0% | |
| CTTCGTGACTTTCCTTGAAA+GGG | + | chr5_1:29354259-29354278 | Msa0727150:CDS | 40.0% | |
| ACCATCCATATTATCCATGG+CGG | - | chr5_1:29354297-29354316 | None:intergenic | 40.0% | |
| AGCACCATCCATATTATCCA+TGG | - | chr5_1:29354300-29354319 | None:intergenic | 40.0% | |
| ! | ATGGATGGTGCTGAACTATA+TGG | + | chr5_1:29354308-29354327 | Msa0727150:CDS | 40.0% |
| CTTCCTGAAAAGATTAAGGG+CGG | + | chr5_1:29354356-29354375 | Msa0727150:CDS | 40.0% | |
| CTTGCAATGTTGTCAAATGG+TGG | + | chr5_1:29354654-29354673 | Msa0727150:intron | 40.0% | |
| !!! | GCCTTAGCTGCTTTTCAATA+TGG | + | chr5_1:29354765-29354784 | Msa0727150:intron | 40.0% |
| GTCTCTTGCCACTAAGTATT+AGG | + | chr5_1:29355010-29355029 | Msa0727150:intron | 40.0% | |
| GGGAATTGCTTAGAATGTAG+AGG | + | chr5_1:29355068-29355087 | Msa0727150:intron | 40.0% | |
| !! | GTAGCTAATGGATTGAACCT+TGG | + | chr5_1:29355185-29355204 | Msa0727150:intron | 40.0% |
| AAACCATTGGGCTACTCATT+TGG | + | chr5_1:29355240-29355259 | Msa0727150:intron | 40.0% | |
| TTTCCAAATGAGTAGCCCAA+TGG | - | chr5_1:29355246-29355265 | None:intergenic | 40.0% | |
| ATGCATAATATATGCGGTCC+GGG | - | chr5_1:29355545-29355564 | None:intergenic | 40.0% | |
| !!! | ATGGTGCAGAGGCATTTTAA+GGG | - | chr5_1:29355785-29355804 | None:intergenic | 40.0% |
| TCAAAGATGATCCTATGGCA+AGG | + | chr5_1:29356406-29356425 | Msa0727150:CDS | 40.0% | |
| CAAAGATGATCCTATGGCAA+GGG | + | chr5_1:29356407-29356426 | Msa0727150:CDS | 40.0% | |
| TGAGATCAAGGACAATCCTA+TGG | + | chr5_1:29356453-29356472 | Msa0727150:exon | 40.0% | |
| AAGGACAATCCTATGGCAAA+AGG | + | chr5_1:29356460-29356479 | Msa0727150:three_prime_UTR | 40.0% | |
| GGGTATGTGAGCAATTGAAG+TGG | + | chr5_1:29353947-29353966 | Msa0727150:five_prime_UTR | 45.0% | |
| CAACAATGGCGATGATGCAA+GGG | + | chr5_1:29354093-29354112 | Msa0727150:exon | 45.0% | |
| AACAATGGCGATGATGCAAG+GGG | + | chr5_1:29354094-29354113 | Msa0727150:exon | 45.0% | |
| CATACCCTTCGGAGATATCA+AGG | + | chr5_1:29354187-29354206 | Msa0727150:CDS | 45.0% | |
| ACGTCCTTGATATCTCCGAA+GGG | - | chr5_1:29354194-29354213 | None:intergenic | 45.0% | |
| GCTTCGTGACTTTCCTTGAA+AGG | + | chr5_1:29354258-29354277 | Msa0727150:CDS | 45.0% | |
| ATCCATATTATCCATGGCGG+CGG | - | chr5_1:29354294-29354313 | None:intergenic | 45.0% | |
| ! | TCACCGCCCTTAATCTTTTC+AGG | - | chr5_1:29354362-29354381 | None:intergenic | 45.0% |
| AAGATTAAGGGCGGTGAACA+AGG | + | chr5_1:29354365-29354384 | Msa0727150:CDS | 45.0% | |
| !! | GGTTTTATGGGTAGAGGCAT+TGG | + | chr5_1:29354489-29354508 | Msa0727150:intron | 45.0% |
| GGCAATGCACCTATTGATCT+AGG | - | chr5_1:29354748-29354767 | None:intergenic | 45.0% | |
| GTGTCTCGGCATAAACCATT+GGG | + | chr5_1:29355228-29355247 | Msa0727150:intron | 45.0% | |
| TGCATAATATATGCGGTCCG+GGG | - | chr5_1:29355544-29355563 | None:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr5_1:29355571-29355590 | None:intergenic | 45.0% |
| !!! | GATGGTGCAGAGGCATTTTA+AGG | - | chr5_1:29355786-29355805 | None:intergenic | 45.0% |
| ! | CATCATGAATGATGGTGCAG+AGG | - | chr5_1:29355796-29355815 | None:intergenic | 45.0% |
| CTCTGCACCATCATTCATGA+TGG | + | chr5_1:29355794-29355813 | Msa0727150:intron | 45.0% | |
| ATTATGCTGGGACACCAATG+CGG | + | chr5_1:29355866-29355885 | Msa0727150:intron | 45.0% | |
| CACATTCTGTCTCTCGACTA+TGG | - | chr5_1:29356011-29356030 | None:intergenic | 45.0% | |
| CATAGTCGAGAGACAGAATG+TGG | + | chr5_1:29356009-29356028 | Msa0727150:intron | 45.0% | |
| ! | ATTTTCAGTTTGGGCGGATG+CGG | + | chr5_1:29356242-29356261 | Msa0727150:intron | 45.0% |
| TGAACGACAGCAACAAGAAG+AGG | + | chr5_1:29356275-29356294 | Msa0727150:CDS | 45.0% | |
| AGAGAGTAAAGCTGCAATGC+TGG | + | chr5_1:29356317-29356336 | Msa0727150:CDS | 45.0% | |
| !! | TGTAAATCAGAGGGAGCACT+TGG | + | chr5_1:29356527-29356546 | Msa0727150:three_prime_UTR | 45.0% |
| ATACAAGTGAGGCAATGGAC+AGG | - | chr5_1:29356692-29356711 | None:intergenic | 45.0% | |
| !! | ATAAATATATTCATATTATT+TGG | - | chr5_1:29353876-29353895 | None:intergenic | 5.0% |
| !! | AAAATAAAATAAAATAAAGT+TGG | + | chr5_1:29354031-29354050 | Msa0727150:five_prime_UTR | 5.0% |
| GCAACAATGGCGATGATGCA+AGG | + | chr5_1:29354092-29354111 | Msa0727150:exon | 50.0% | |
| AAGAACACTCTCTACGTCGG+TGG | + | chr5_1:29354122-29354141 | Msa0727150:CDS | 50.0% | |
| TCTCTACGTCGGTGGTTTAG+CGG | + | chr5_1:29354130-29354149 | Msa0727150:CDS | 50.0% | |
| CACGTCCTTGATATCTCCGA+AGG | - | chr5_1:29354195-29354214 | None:intergenic | 50.0% | |
| TTCTGCGTTGCTTGGTCAAG+CGG | - | chr5_1:29354224-29354243 | None:intergenic | 50.0% | |
| AACGATGCTTCTGCGTTGCT+TGG | - | chr5_1:29354232-29354251 | None:intergenic | 50.0% | |
| !! | ACGCAGAAGCATCGTTCCTT+CGG | + | chr5_1:29354236-29354255 | Msa0727150:CDS | 50.0% |
| AAGGAAAGTCACGAAGCCGA+AGG | - | chr5_1:29354255-29354274 | None:intergenic | 50.0% | |
| !! | CGGAAGCATCTTCCCTTTCA+AGG | - | chr5_1:29354274-29354293 | None:intergenic | 50.0% |
| TTCCGCCGCCATGGATAATA+TGG | + | chr5_1:29354289-29354308 | Msa0727150:CDS | 50.0% | |
| GCCGCCATGGATAATATGGA+TGG | + | chr5_1:29354293-29354312 | Msa0727150:CDS | 50.0% | |
| TTAAGGGCGGTGAACAAGGA+TGG | + | chr5_1:29354369-29354388 | Msa0727150:CDS | 50.0% | |
| TAAGGGCGGTGAACAAGGAT+GGG | + | chr5_1:29354370-29354389 | Msa0727150:CDS | 50.0% | |
| GGTGTCTCGGCATAAACCAT+TGG | + | chr5_1:29355227-29355246 | Msa0727150:intron | 50.0% | |
| CCTTGTGAGCTTAGCTCAGT+TGG | - | chr5_1:29355576-29355595 | None:intergenic | 50.0% | |
| CCAACTGAGCTAAGCTCACA+AGG | + | chr5_1:29355573-29355592 | Msa0727150:intron | 50.0% | |
| CCAGGATTCATAAGCCGCAT+TGG | - | chr5_1:29355883-29355902 | None:intergenic | 50.0% | |
| CCAATGCGGCTTATGAATCC+TGG | + | chr5_1:29355880-29355899 | Msa0727150:intron | 50.0% | |
| CAGCTTTACTCTCTGCTTCG+AGG | - | chr5_1:29356311-29356330 | None:intergenic | 50.0% | |
| TTTCTCTCCTTCCCGCTCTT+CGG | - | chr5_1:29356373-29356392 | None:intergenic | 50.0% | |
| ! | CTGCTTCAGCCTTTTGCCAT+AGG | - | chr5_1:29356472-29356491 | None:intergenic | 50.0% |
| ATGGCAAAAGGCTGAAGCAG+AGG | + | chr5_1:29356472-29356491 | Msa0727150:three_prime_UTR | 50.0% | |
| !! | ATCAGAGGGAGCACTTGGTA+AGG | + | chr5_1:29356532-29356551 | Msa0727150:three_prime_UTR | 50.0% |
| !! | TCAGAGGGAGCACTTGGTAA+GGG | + | chr5_1:29356533-29356552 | Msa0727150:three_prime_UTR | 50.0% |
| AGGGTATGAACGCCGCATGA+AGG | - | chr5_1:29354175-29354194 | None:intergenic | 55.0% | |
| CATGCGGCGTTCATACCCTT+CGG | + | chr5_1:29354176-29354195 | Msa0727150:CDS | 55.0% | |
| GGTGGCTGTAGCACTAGCAA+AGG | + | chr5_1:29354672-29354691 | Msa0727150:intron | 55.0% | |
| TTTGGGCGGATGCGGATACT+TGG | + | chr5_1:29356250-29356269 | Msa0727150:CDS | 55.0% | |
| TGGCTGCTGAAGAACTGCAC+AGG | + | chr5_1:29356337-29356356 | Msa0727150:CDS | 55.0% | |
| GGAAGCAAGTAGCCGAAGAG+CGG | + | chr5_1:29356358-29356377 | Msa0727150:CDS | 55.0% | |
| GAAGCAAGTAGCCGAAGAGC+GGG | + | chr5_1:29356359-29356378 | Msa0727150:CDS | 55.0% | |
| TCTGCTTCAGCCCTTGCCAT+AGG | - | chr5_1:29356420-29356439 | None:intergenic | 55.0% | |
| TATGGCAAGGGCTGAAGCAG+AGG | + | chr5_1:29356419-29356438 | Msa0727150:CDS | 55.0% | |
| CGTCGGTGGTTTAGCGGAAG+AGG | + | chr5_1:29354136-29354155 | Msa0727150:CDS | 60.0% | |
| GTGGTTGGGAACTCGAACCC+CGG | + | chr5_1:29355524-29355543 | Msa0727150:intron | 60.0% | |
| CAAGTAGCCGAAGAGCGGGA+AGG | + | chr5_1:29356363-29356382 | Msa0727150:CDS | 60.0% | |
| GGAAGATGCTTCCGCCGCCA+TGG | + | chr5_1:29354280-29354299 | Msa0727150:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 29353867 | 29356830 | 29353867 | ID=Msa0727150;Name=Msa0727150 |
| chr5_1 | mRNA | 29353867 | 29356830 | 29353867 | ID=Msa0727150-mRNA-1;Parent=Msa0727150;Name=Msa0727150-mRNA-1;_AED=0.00;_eAED=0.00;_QI=231|1|1|1|1|1|2|375|170 |
| chr5_1 | exon | 29353867 | 29354404 | 29353867 | ID=Msa0727150-mRNA-1:exon:10001;Parent=Msa0727150-mRNA-1 |
| chr5_1 | exon | 29356250 | 29356830 | 29356250 | ID=Msa0727150-mRNA-1:exon:10002;Parent=Msa0727150-mRNA-1 |
| chr5_1 | five_prime_UTR | 29353867 | 29354097 | 29353867 | ID=Msa0727150-mRNA-1:five_prime_utr;Parent=Msa0727150-mRNA-1 |
| chr5_1 | CDS | 29354098 | 29354404 | 29354098 | ID=Msa0727150-mRNA-1:cds;Parent=Msa0727150-mRNA-1 |
| chr5_1 | CDS | 29356250 | 29356455 | 29356250 | ID=Msa0727150-mRNA-1:cds;Parent=Msa0727150-mRNA-1 |
| chr5_1 | three_prime_UTR | 29356456 | 29356830 | 29356456 | ID=Msa0727150-mRNA-1:three_prime_utr;Parent=Msa0727150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
