AlfalfaGEDB | Msa1115770

M. sativa cultivar zhongmu-4 / Msa1115770

KEGG: -
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115770	XP_003625189.1	96.850	889	28	0	1	889	1	889	0.0	1731

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115770	sp\|Q9FL51\|Y5694_ARATH	62.618	848	299	8	28	871	32	865	0.0	1024

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115770	A2Q3D8	96.850	889	28	0	1	889	1	889	0.0	1731

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002490	Msa1115770	0.816243	6.115810e-52	-8.615850e-47
Msa0003700	Msa1115770	0.813469	2.519576e-51	-8.615850e-47
Msa0016670	Msa1115770	0.835591	1.535384e-56	-8.615850e-47
Msa0017510	Msa1115770	0.824855	6.438815e-54	-8.615850e-47
Msa0026130	Msa1115770	0.824373	8.359536e-54	-8.615850e-47
Msa0027230	Msa1115770	0.838576	2.649928e-57	-8.615850e-47
Msa0027260	Msa1115770	0.842912	1.934889e-58	-8.615850e-47
Msa0032260	Msa1115770	0.808624	2.826039e-50	-8.615850e-47
Msa0040690	Msa1115770	0.825969	3.507157e-54	-8.615850e-47
Msa0048180	Msa1115770	0.819647	1.040547e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115770	MtrunA17_Chr7g0258081	96.850	889	28	0	1	889	1	889	0.0	1731
Msa1115770	MtrunA17_Chr4g0046511	35.421	974	507	15	6	869	8	969	5.36e-166	509
Msa1115770	MtrunA17_Chr7g0262141	34.909	994	514	18	1	872	10	992	1.00e-164	507
Msa1115770	MtrunA17_Chr1g0183231	33.953	969	506	19	27	872	25	982	2.83e-159	492
Msa1115770	MtrunA17_Chr2g0324931	35.233	965	499	17	32	885	30	979	5.92e-159	491
Msa1115770	MtrunA17_Chr1g0190411	33.566	1001	524	22	1	872	1	989	6.73e-158	489
Msa1115770	MtrunA17_Chr5g0400681	34.298	968	508	23	19	873	18	970	3.45e-154	479
Msa1115770	MtrunA17_Chr2g0282831	34.648	938	501	16	32	873	26	947	1.27e-153	476
Msa1115770	MtrunA17_Chr4g0017251	34.464	943	507	26	24	874	30	953	1.05e-144	453
Msa1115770	MtrunA17_Chr5g0400701	35.679	810	479	15	86	867	201	996	1.27e-140	443

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115770	AT5G06940.1	62.618	848	299	8	28	871	32	865	0.0	1024
Msa1115770	AT1G28440.1	34.418	953	497	14	32	869	23	962	6.39e-162	499
Msa1115770	AT4G28650.1	33.569	992	529	21	1	872	1	982	1.49e-154	480
Msa1115770	AT1G08590.1	33.532	1008	513	25	6	872	15	1006	1.36e-152	476
Msa1115770	AT4G28490.1	34.660	955	484	20	36	869	32	967	3.02e-149	466
Msa1115770	AT3G49670.1	33.229	963	513	19	20	869	19	964	7.12e-148	462
Msa1115770	AT5G49660.1	34.674	920	467	17	45	864	46	931	7.32e-147	459
Msa1115770	AT5G65700.1	32.694	991	517	22	18	885	15	978	1.30e-145	456
Msa1115770	AT5G65700.2	32.694	991	517	22	18	885	15	978	1.30e-145	456
Msa1115770	AT5G65710.1	33.129	981	511	19	24	871	23	991	8.58e-145	454

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Find 156 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGAAGTGGAATAGGT+TGG	0.548146	7_3:-63296218	None:intergenic
AACACAAGTCCTTGACTCAA+GGG	0.573602	7_3:-63298600	None:intergenic
AACACACTTAAGTTTAACAA+TGG	0.564384	7_3:+63295867	Msa1115770:exon
AACATGAATTCGGCAATCCA+GGG	0.599373	7_3:-63297442	None:intergenic
AACCATTTATGTAATTGGAC+TGG	0.485913	7_3:+63296048	Msa1115770:CDS
AAGAATGTTGCCAAGATTCT+TGG	0.319173	7_3:+63297836	Msa1115770:CDS
AAGATGATATATCACCAGAT+AGG	0.507281	7_3:-63296140	None:intergenic
AAGGGAATGAAGATGCGGTT+TGG	0.472122	7_3:+63297597	Msa1115770:CDS
AATAATGGTCTTTGTGGCCC+TGG	0.449307	7_3:+63297425	Msa1115770:CDS
AATCTTCAAGTGCTTAACAT+GGG	0.645585	7_3:+63296396	Msa1115770:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCATTTATGTAATTGGAC+TGG	+	chr7_3:63296048-63296067	Msa1115770:CDS	30.0%
TTCCAGTCCAATTACATAAA+TGG	-	chr7_3:63296053-63296072	None:intergenic	30.0%
AAGATGATATATCACCAGAT+AGG	-	chr7_3:63296143-63296162	None:intergenic	30.0%
GGTTAAAGATGTTATTAGCA+AGG	-	chr7_3:63296200-63296219	None:intergenic	30.0%
CTGGAATATTTCCTTCTATA+TGG	-	chr7_3:63296356-63296375	None:intergenic	30.0%
GGAAATATTCCAGATAGTTT+AGG	+	chr7_3:63296363-63296382	Msa1115770:CDS	30.0%
TTCAATGAACCTAAACTATC+TGG	-	chr7_3:63296375-63296394	None:intergenic	30.0%
AATCTTCAAGTGCTTAACAT+GGG	+	chr7_3:63296396-63296415	Msa1115770:CDS	30.0%
GTCAAGTTACCAAAAACTTT+AGG	-	chr7_3:63296447-63296466	None:intergenic	30.0%
TGAGAATAATCTAACTGGTA+AGG	+	chr7_3:63296638-63296657	Msa1115770:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	63295867	63298903	63295867	ID=Msa1115770;Name=Msa1115770
chr7_3	mRNA	63295867	63298903	63295867	ID=Msa1115770-mRNA-1;Parent=Msa1115770;Name=Msa1115770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=19\|1\|1\|1\|1\|1\|2\|236\|889
chr7_3	exon	63295867	63298184	63295867	ID=Msa1115770-mRNA-1:exon:14825;Parent=Msa1115770-mRNA-1
chr7_3	exon	63298297	63298903	63298297	ID=Msa1115770-mRNA-1:exon:14826;Parent=Msa1115770-mRNA-1
chr7_3	five_prime_UTR	63295867	63295885	63295867	ID=Msa1115770-mRNA-1:five_prime_utr;Parent=Msa1115770-mRNA-1
chr7_3	CDS	63295886	63298184	63295886	ID=Msa1115770-mRNA-1:cds;Parent=Msa1115770-mRNA-1
chr7_3	CDS	63298297	63298667	63298297	ID=Msa1115770-mRNA-1:cds;Parent=Msa1115770-mRNA-1
chr7_3	three_prime_UTR	63298668	63298903	63298668	ID=Msa1115770-mRNA-1:three_prime_utr;Parent=Msa1115770-mRNA-1

Gene Sequence

>Msa1115770

ATGGCTACTACTACATTCTGTATATTCCTATTCCTTCTTTCTCTAACCTTCCAAATCTTCAACCTCACTTCATCTTCATCAGAAGTTGATACCCTTCTCTCCTTCAAATCCACCATTCAAGACTCTAAAAAAGCTTTATCAACTTGGTCAAACACTTCATCAAACCATTTATGTAATTGGACTGGAATCTCTTGTTCTTCCACTACACCTTCTGATTCACTCTCAGTAACTTCTGTTAATCTTCAAAGCTTAAACCTATCTGGTGATATATCATCTTCTATATGTGACCTTCCTAATCTTTCTTATCTTAACCTTGCTAATAACATCTTTAACCAACCTATTCCACTTCATCTTTCTCAATGTAGTTCATTGAAAAGCTTGAATCTAAGTAATAATCTTATTTGGGGTACTATCCCTTCTCAGATTTCTCAGTTTGTTTCTTTGTCAGTGCTTGATTTAAGTAGAAACCATATAGAAGGAAATATTCCAGATAGTTTAGGTTCATTGAAGAATCTTCAAGTGCTTAACATGGGAAGTAACTTGCTTTCAGGTGATGTACCTAAAGTTTTTGGTAACTTGACTAAGCTAGAAGTTCTTGATTTGTCTATGAATCCTTACCTGGTGAGTGAGATTCCAGAAGATGTTGGTGAGCTTGGAAATCTAAAGCAACTTTTGTTGCAGGGTTCTTCTTTTCAAGGTGAAGTTCCTGAGTCTTTGAAGGGTTTGATTAGTTTAACTCATTTAGATCTCTCTGAGAATAATCTAACTGGTAAGGTTCCAAACACTCTTGTAAGTTCTCTCATGAACTTGGTTTCTTTTGATGTTTCACAAAACAAGCTTTTAGGTTCATTTCCAAATGGTTTATGTAAAGGAAAAGGGCTTGTAAATCTAAGTCTTCATACAAATAGGTTCACTGGTTTAATACCTAACTCAACTAGTGAATGTAAGAGTCTTGAGAGATTCCAAGTTCAGAACAATGGTTTCTCTGGTGATTTCCCAATTGTGTTATTTTCACTTCCTAAAATTAAGCTCATTAGAGGTGAAAACAACAGATTCACAGGACAAATACCTGAGTCAATCTCAGAAGCTGTTCAGTTAGAGCAAGTTCAGCTTGATAACAATCTTTTTGATGGTAAAATTCCTTCAGGTCTTGGATTTGTTAAAAGCTTATACAGATTTTCTGCTTCTCTAAATCATTTTTATGGTGAACTTCCACCTAATTTTTGTGACTCACCAGTTATGAGTATAGTGAATCTCTCTCACAATTCTCTTTCTGGTTCTATCCCGCAGCTGAAAAAATGCAGGAAACTAGTTTCACTTTCTTTAGCTGATAACAGTTTAACAGGAGAAATTCCTAATTCTCTTGCTGAACTTCCTGTGCTCACTTACCTTGATCTTTCTGATAACAATCTCACTGGTTCAATCCCACAAAGTCTTCAAAACTTGAAACTTGCTCTTTTCAACGTGTCATTCAATCAGTTATCAGGTAAAGTACCATACTCTTTGATTTCTGGTCTTCCTGCATCCTTTTTGGAAGGAAATAATGGTCTTTGTGGCCCTGGATTGCCGAATTCATGTTCTGATGATGGAAAGCCAATACACCATACTGCTTCTGGTTTAACAACCTTAACATGTGCTTTGATCTCTCTAGCATTTGTTGCTGGAACTGTTCTTGTTGCCAGTGGATTTATATTGTATAGGAGATCTTGCAAAGGGAATGAAGATGCGGTTTGGCGTTCGGTCTTTTTCTATCCACTTAGAATTACTGAGCATGATCTTGTTATAGGGATGAATGAGAAAAGTTCAATAGGAAATGGAGATTTTGGTAATGTTTATGTTGTGAGTTTACCTAGTGGTGATTTAGTATCTGTAAAGAAATTGGTAAAATTTGGAAACCAGTCTTCAAAGAGTTTGAAAGTTGAGGTCAAAACATTGGCTAAAATTAGGCATAAGAATGTTGCCAAGATTCTTGGGTTCTGTCATTCTGATGAATCAGTTTTTCTCATCTATGAGTACTTGCATGGTGGAAGCTTAGGGGACTTGATTTGTAGTCAAAACTTTCAGTTGCATTGGGGAGTTAGATTAAAGATTGCTATTGGAGTTGCTCAAGGACTCGCATATCTTCACAAGGACTATGTACCACACTTGGTTCATAGAAATCTCAAGTCAAAGAACATTCTGTTGGATGTTAACTTTGAGCCAAAATTGACACATTTTGCTCTTGATAGGATTGTTGGAGAAGCTGCATTTCAATCTACTTTGGATTCTGAAGCTGCATCTTCTTGTTACATTGCTCCAGAATATGGTTACAATAAGAAAGCAAGTGAGCAATTGGATGTGTACAGCTTTGGTGTTGTATTGCTAGAGCTAGTTTGTGGAAGACAAGCGGAGGAAAAAGATTCAAGTGACTCCTCACTTGATATAGTGAAATGGGTTAGAAGGAAAGTGAATATTACTAATGGGGTGCAACAAGTTCTTGACACTAGAATATCACATTCTTGTCACCAAGAAATGATTGGTGCTTTAGATATTGCTCTACGTTGCACTTCTGTGGTACCTGAGAAAAGGCCATCAATGTTAGAAGTTGTTAGAGGTCTTCAGTCCCTTGAGTCAAGGACTTGTGTTGCAAATTTGCAGGGTGCAAATGATGAACCCTCCATTCTAGTTTGA

Protein sequence

>Msa1115770

MATTTFCIFLFLLSLTFQIFNLTSSSSEVDTLLSFKSTIQDSKKALSTWSNTSSNHLCNWTGISCSSTTPSDSLSVTSVNLQSLNLSGDISSSICDLPNLSYLNLANNIFNQPIPLHLSQCSSLKSLNLSNNLIWGTIPSQISQFVSLSVLDLSRNHIEGNIPDSLGSLKNLQVLNMGSNLLSGDVPKVFGNLTKLEVLDLSMNPYLVSEIPEDVGELGNLKQLLLQGSSFQGEVPESLKGLISLTHLDLSENNLTGKVPNTLVSSLMNLVSFDVSQNKLLGSFPNGLCKGKGLVNLSLHTNRFTGLIPNSTSECKSLERFQVQNNGFSGDFPIVLFSLPKIKLIRGENNRFTGQIPESISEAVQLEQVQLDNNLFDGKIPSGLGFVKSLYRFSASLNHFYGELPPNFCDSPVMSIVNLSHNSLSGSIPQLKKCRKLVSLSLADNSLTGEIPNSLAELPVLTYLDLSDNNLTGSIPQSLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLEGNNGLCGPGLPNSCSDDGKPIHHTASGLTTLTCALISLAFVAGTVLVASGFILYRRSCKGNEDAVWRSVFFYPLRITEHDLVIGMNEKSSIGNGDFGNVYVVSLPSGDLVSVKKLVKFGNQSSKSLKVEVKTLAKIRHKNVAKILGFCHSDESVFLIYEYLHGGSLGDLICSQNFQLHWGVRLKIAIGVAQGLAYLHKDYVPHLVHRNLKSKNILLDVNFEPKLTHFALDRIVGEAAFQSTLDSEAASSCYIAPEYGYNKKASEQLDVYSFGVVLLELVCGRQAEEKDSSDSSLDIVKWVRRKVNITNGVQQVLDTRISHSCHQEMIGALDIALRCTSVVPEKRPSMLEVVRGLQSLESRTCVANLQGANDEPSILV*