AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0242230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0242230 MtrunA17_Chr2g0294341 100.000 110 0 0 1 110 1 110 1.49e-74 216
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0242230 AT3G06610.1 80.000 110 21 1 1 109 1 110 2.34e-56 170

Find 40 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGTTCCTATTATATTAA+TGG 0.194107 2_2:+18273841 Msa0242230:three_prime_UTR
TATATAACAGTTGGACAAAA+AGG 0.270788 2_2:+18273544 Msa0242230:intron
GCCCAACAAGCAACAAAATA+TGG 0.274707 2_2:-18273919 None:intergenic
AATATAATAGGAACTTCTTT+AGG 0.285089 2_2:-18273836 None:intergenic
ACTCTGCTGTTGCATGTCTT+TGG 0.288649 2_2:-18270531 None:intergenic
TGCTTCACCATTAATATAAT+AGG 0.338544 2_2:-18273848 None:intergenic
CTGCTTCTGCTGAAGCTGAT+TGG 0.380996 2_2:+18270636 Msa0242230:CDS
CTTTAGGACCAGAAAATTTG+AGG 0.435403 2_2:-18273820 None:intergenic
TGGAGACGAAGGAGTGGAGA+TGG 0.452107 2_2:+18270499 Msa0242230:CDS
AGTGCAAGTAACAAAATAGT+TGG 0.453367 2_2:-18273945 None:intergenic
TAAATCACATTCTGAAACAT+TGG 0.455290 2_2:-18273656 None:intergenic
ATTGGAATGCTATGCGTTTG+AGG 0.478356 2_2:+18270654 Msa0242230:CDS
TATTATATTAATGGTGAAGC+AGG 0.480756 2_2:+18273850 Msa0242230:three_prime_UTR
GATGATATGATATAGTTCAT+TGG 0.482040 2_2:+18273740 Msa0242230:three_prime_UTR
AGGACCTTGCGTGAGCATAA+AGG 0.482732 2_2:+18273575 Msa0242230:CDS
AGCTTCAGCAGAAGCAGCAA+TGG 0.492964 2_2:-18270630 None:intergenic
GGAGGGTGGAGACGAAGGAG+TGG 0.517925 2_2:+18270493 Msa0242230:CDS
TTTAGGACCAGAAAATTTGA+GGG 0.523666 2_2:-18273819 None:intergenic
AGAAGCAGCAATGGAAGCCA+TGG 0.542542 2_2:-18270621 None:intergenic
CGTCATTTGCTTCACTAGTG+TGG 0.560043 2_2:+18273617 Msa0242230:exon
TGGAATGATAAAACCATGGA+AGG 0.560527 2_2:-18273899 None:intergenic
TCAAATGTGACAGCCTTCCA+TGG 0.560662 2_2:+18273886 Msa0242230:three_prime_UTR
AACTCGTGTTCAAGAAGCCA+TGG 0.561938 2_2:+18270604 Msa0242230:CDS
GCGGTCAGTGAGTTTATCGA+AGG 0.611692 2_2:-18270558 None:intergenic
CAGAAACACTAAACTACACA+CGG 0.612945 2_2:-18270433 None:intergenic
AGACGAAGGAGTGGAGATGG+TGG 0.620347 2_2:+18270502 Msa0242230:CDS
AAAATGGAGGGTGGAGACGA+AGG 0.628134 2_2:+18270488 Msa0242230:exon
GAACACGAGTTGAATCAAGC+TGG 0.629690 2_2:-18270592 None:intergenic
GGAAGGCTGTCACATTTGAG+TGG 0.629781 2_2:-18273882 None:intergenic
TATAATTGCAAACGAACTAG+AGG 0.633062 2_2:+18273447 Msa0242230:CDS
TCACATCATAGTATACATTG+AGG 0.637665 2_2:-18273717 None:intergenic
AATATGGAATGATAAAACCA+TGG 0.648249 2_2:-18273903 None:intergenic
CTAGTGAAGCAAATGACGAA+TGG 0.649500 2_2:-18273612 None:intergenic
TAGTGTGGTAGAAACAAACA+AGG 0.650096 2_2:+18273632 Msa0242230:exon
ATCACCTTTATGCTCACGCA+AGG 0.659657 2_2:-18273579 None:intergenic
TAGGACCAGAAAATTTGAGG+GGG 0.670773 2_2:-18273817 None:intergenic
TTAGGACCAGAAAATTTGAG+GGG 0.674228 2_2:-18273818 None:intergenic
ACACTAAACTACACACGGTG+AGG 0.684829 2_2:-18270428 None:intergenic
AGTGTGGTAGAAACAAACAA+GGG 0.777336 2_2:+18273633 Msa0242230:exon
CAAGCTGGCGATCTTCAACG+CGG 0.793472 2_2:-18270577 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTATATACCAAAATAT+AGG - chr2_2:18271146-18271165 None:intergenic 10.0%
!! AATAATCTTAAAACATATTA+TGG + chr2_2:18271301-18271320 Msa0242230:intron 10.0%
!!! AAATTGTTAATTTTGAATTT+TGG + chr2_2:18272702-18272721 Msa0242230:intron 10.0%
!!! AATTGTTAATTTTGAATTTT+GGG + chr2_2:18272703-18272722 Msa0242230:intron 10.0%
!!! AAAGTTTAATTTTTTCTGTA+TGG + chr2_2:18270855-18270874 Msa0242230:intron 15.0%
!!! AAGTTTAATTTTTTCTGTAT+GGG + chr2_2:18270856-18270875 Msa0242230:intron 15.0%
!!! AAATTGCTAATTTTTGAATT+TGG + chr2_2:18272026-18272045 Msa0242230:intron 15.0%
!!! AATTGCTAATTTTTGAATTT+GGG + chr2_2:18272027-18272046 Msa0242230:intron 15.0%
!!! AGTTCTTAAATTTTAATGTT+AGG + chr2_2:18272927-18272946 Msa0242230:intron 15.0%
!!! TTAAATTTTAATGTTAGGTT+TGG + chr2_2:18272932-18272951 Msa0242230:intron 15.0%
!! AAATATCAAAAAAAGAACAA+AGG - chr2_2:18273051-18273070 None:intergenic 15.0%
!!! ATTGATTCATTTTTTCTTTG+TGG + chr2_2:18270692-18270711 Msa0242230:intron 20.0%
!!! TTGATTCATTTTTTCTTTGT+GGG + chr2_2:18270693-18270712 Msa0242230:intron 20.0%
!! TAATCAATGAATCTAAAAAG+TGG - chr2_2:18271109-18271128 None:intergenic 20.0%
!!! AACTTAATGATGGAAATTAT+AGG + chr2_2:18271461-18271480 Msa0242230:intron 20.0%
!! AAAAACTATAGATCAAACTA+TGG + chr2_2:18271894-18271913 Msa0242230:intron 20.0%
!! TCAAAATCTATTTGCAAAAA+AGG - chr2_2:18272003-18272022 None:intergenic 20.0%
!!! ATTGCTAATTTTTGAATTTG+GGG + chr2_2:18272028-18272047 Msa0242230:intron 20.0%
!!! TATTCCTATTTTTTCTTTGT+AGG - chr2_2:18272371-18272390 None:intergenic 20.0%
!!! TCATATGTTCAACATTTTAA+TGG - chr2_2:18272827-18272846 None:intergenic 20.0%
!! TATAATACCAGAACATAAAA+AGG - chr2_2:18273174-18273193 None:intergenic 20.0%
!! ATTATATGTTGTATTACTAG+TGG + chr2_2:18273188-18273207 Msa0242230:intron 20.0%
!!! ATGTATTTTGATTGAATCAT+AGG + chr2_2:18273380-18273399 Msa0242230:intron 20.0%
!!! TGTATTTTGATTGAATCATA+GGG + chr2_2:18273381-18273400 Msa0242230:intron 20.0%
!!! GTAAATTTCTAGATAGATTT+CGG - chr2_2:18273494-18273513 None:intergenic 20.0%
!!! AGAAAAGTATGTTAATTGAT+TGG - chr2_2:18273524-18273543 None:intergenic 20.0%
!!! TACTTTTCTTATATAACAGT+TGG + chr2_2:18273535-18273554 Msa0242230:intron 20.0%
!!! CTTATATTTATTGTTTTGCA+TGG + chr2_2:18273685-18273704 Msa0242230:three_prime_UTR 20.0%
!! AATATAATAGGAACTTCTTT+AGG - chr2_2:18273839-18273858 None:intergenic 20.0%
!! AGAAGTTCCTATTATATTAA+TGG + chr2_2:18273841-18273860 Msa0242230:three_prime_UTR 20.0%
!!! TAGTGTTTCTGAAATTTTCT+AGG + chr2_2:18270445-18270464 Msa0242230:five_prime_UTR 25.0%
!!! AGTGTTTCTGAAATTTTCTA+GGG + chr2_2:18270446-18270465 Msa0242230:five_prime_UTR 25.0%
! AAAGAACAGAATCAGAAAAA+TGG + chr2_2:18270472-18270491 Msa0242230:exon 25.0%
!!! AGAATGAGGTTTTTAGTTAT+TGG + chr2_2:18270752-18270771 Msa0242230:intron 25.0%
!!! GAATGAGGTTTTTAGTTATT+GGG + chr2_2:18270753-18270772 Msa0242230:intron 25.0%
!!! TTTTAGTTATTGGGAATTAG+AGG + chr2_2:18270762-18270781 Msa0242230:intron 25.0%
! TTTAGTTATTGGGAATTAGA+GGG + chr2_2:18270763-18270782 Msa0242230:intron 25.0%
! TTAATGACTCTATAAACAAG+TGG + chr2_2:18270913-18270932 Msa0242230:intron 25.0%
!!! CATATCGATTTTAAGTTAGA+TGG + chr2_2:18270957-18270976 Msa0242230:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG - chr2_2:18271044-18271063 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+AGG - chr2_2:18271085-18271104 None:intergenic 25.0%
!! CATTGATTAACATCAATATC+TGG + chr2_2:18271120-18271139 Msa0242230:intron 25.0%
! TATTCAATGAACCTAAAATG+TGG + chr2_2:18271182-18271201 Msa0242230:intron 25.0%
!!! AACCTAAAATGTGGTTTTTT+AGG + chr2_2:18271191-18271210 Msa0242230:intron 25.0%
!!! TAAAATGTGGTTTTTTAGGT+GGG + chr2_2:18271195-18271214 Msa0242230:intron 25.0%
!! AGATTATTTTCATAAGCTCT+TGG - chr2_2:18271289-18271308 None:intergenic 25.0%
! TACTTAGGTTCTATTTGAAT+TGG - chr2_2:18271416-18271435 None:intergenic 25.0%
! ACCTAAGTACAATAAGTATA+TGG + chr2_2:18271427-18271446 Msa0242230:intron 25.0%
! TCCATATACTTATTGTACTT+AGG - chr2_2:18271431-18271450 None:intergenic 25.0%
! ATGCAATTCTAACTTAATGA+TGG + chr2_2:18271451-18271470 Msa0242230:intron 25.0%
!! CTATTTCTTACTACTTATGT+AGG - chr2_2:18271862-18271881 None:intergenic 25.0%
! ACATAAGTAGTAAGAAATAG+AGG + chr2_2:18271862-18271881 Msa0242230:intron 25.0%
! CATAAGTAGTAAGAAATAGA+GGG + chr2_2:18271863-18271882 Msa0242230:intron 25.0%
!! GTTTGATCTATAGTTTTTCT+TGG - chr2_2:18271892-18271911 None:intergenic 25.0%
! AATCTATTTGCAAAAAAGGT+GGG - chr2_2:18271999-18272018 None:intergenic 25.0%
! AAATCTATTTGCAAAAAAGG+TGG - chr2_2:18272000-18272019 None:intergenic 25.0%
!! TTGCTAATTTTTGAATTTGG+GGG + chr2_2:18272029-18272048 Msa0242230:intron 25.0%
! AAAGATGATGAAAGATCATT+AGG + chr2_2:18272069-18272088 Msa0242230:intron 25.0%
! ACAATACTTGTAATATTGCA+TGG + chr2_2:18272277-18272296 Msa0242230:intron 25.0%
! TAAAGATGCGAATCTTATAT+TGG + chr2_2:18272338-18272357 Msa0242230:intron 25.0%
!! TCTAACATGTTTTCTACAAT+AGG - chr2_2:18272427-18272446 None:intergenic 25.0%
! TATTTACTTCGAAATCTCTA+TGG - chr2_2:18272574-18272593 None:intergenic 25.0%
! ATAGAGATTTCGAAGTAAAT+AGG + chr2_2:18272573-18272592 Msa0242230:intron 25.0%
!!! TAAATACTCAAGTTGAAAAC+TGG - chr2_2:18272999-18273018 None:intergenic 25.0%
!! TCTGAAATTTCTAAAAGCAT+AGG + chr2_2:18273020-18273039 Msa0242230:intron 25.0%
! ATTTCTATACATAACTTCAG+GGG - chr2_2:18273289-18273308 None:intergenic 25.0%
! GATTTCTATACATAACTTCA+GGG - chr2_2:18273290-18273309 None:intergenic 25.0%
! TGATTTCTATACATAACTTC+AGG - chr2_2:18273291-18273310 None:intergenic 25.0%
! TATATAACAGTTGGACAAAA+AGG + chr2_2:18273544-18273563 Msa0242230:intron 25.0%
!!! TAAATCACATTCTGAAACAT+TGG - chr2_2:18273659-18273678 None:intergenic 25.0%
! GATGATATGATATAGTTCAT+TGG + chr2_2:18273740-18273759 Msa0242230:three_prime_UTR 25.0%
! TGCTTCACCATTAATATAAT+AGG - chr2_2:18273851-18273870 None:intergenic 25.0%
! TATTATATTAATGGTGAAGC+AGG + chr2_2:18273850-18273869 Msa0242230:three_prime_UTR 25.0%
! AATATGGAATGATAAAACCA+TGG - chr2_2:18273906-18273925 None:intergenic 25.0%
AACAGAATCAGAAAAATGGA+GGG + chr2_2:18270476-18270495 Msa0242230:exon 30.0%
! GTTCTTCTGTGTGAAAATTT+TGG + chr2_2:18270729-18270748 Msa0242230:intron 30.0%
!! TGTGAAAATTTTGGAGAATG+AGG + chr2_2:18270738-18270757 Msa0242230:intron 30.0%
TTAGTTATTGGGAATTAGAG+GGG + chr2_2:18270764-18270783 Msa0242230:intron 30.0%
!!! TCGATTTTAAGTTAGATGGT+TGG + chr2_2:18270961-18270980 Msa0242230:intron 30.0%
!!! CGATTTTAAGTTAGATGGTT+GGG + chr2_2:18270962-18270981 Msa0242230:intron 30.0%
! TCAATATCTGGCCTATATTT+TGG + chr2_2:18271132-18271151 Msa0242230:intron 30.0%
! CACCTAAAAAACCACATTTT+AGG - chr2_2:18271196-18271215 None:intergenic 30.0%
!!! CTAAAATGTGGTTTTTTAGG+TGG + chr2_2:18271194-18271213 Msa0242230:intron 30.0%
! CTTTTCATAACTTTGGATGA+AGG - chr2_2:18271528-18271547 None:intergenic 30.0%
CTTCATCCAAAGTTATGAAA+AGG + chr2_2:18271526-18271545 Msa0242230:intron 30.0%
TAGAGGAAGATGTAAACAAT+AGG + chr2_2:18271549-18271568 Msa0242230:intron 30.0%
AACTTTACTGCACAACTATA+AGG + chr2_2:18271629-18271648 Msa0242230:intron 30.0%
TGGTGTCTACAAAGAAAAAT+AGG + chr2_2:18271745-18271764 Msa0242230:intron 30.0%
! TGCTATGTTTTCTACAATGA+GGG - chr2_2:18271801-18271820 None:intergenic 30.0%
ATCAAACTATGGTGATTTAG+AGG + chr2_2:18271905-18271924 Msa0242230:intron 30.0%
TTATCTTTGAACTTGATGCA+TGG + chr2_2:18271936-18271955 Msa0242230:intron 30.0%
ATCTATTTGCAAAAAAGGTG+GGG - chr2_2:18271998-18272017 None:intergenic 30.0%
TGAGTAATGAATAAGTTGCT+CGG + chr2_2:18272118-18272137 Msa0242230:intron 30.0%
!! AATTTTCCTTCAGGTTTGAA+TGG - chr2_2:18272245-18272264 None:intergenic 30.0%
TATTGCATGGAATTGAATGT+TGG + chr2_2:18272290-18272309 Msa0242230:intron 30.0%
ATGCGAATCTTATATTGGAT+TGG + chr2_2:18272343-18272362 Msa0242230:intron 30.0%
TTCAATGATTAGAGAGAGAT+AGG + chr2_2:18272395-18272414 Msa0242230:intron 30.0%
TCAATGATTAGAGAGAGATA+GGG + chr2_2:18272396-18272415 Msa0242230:intron 30.0%
ACATGTTAGAGTTTCATCTT+AGG + chr2_2:18272437-18272456 Msa0242230:intron 30.0%
ATAGAGGAAGTCAATATTGT+AGG + chr2_2:18272543-18272562 Msa0242230:intron 30.0%
CGAAGTAAATAGGTTATCTT+CGG + chr2_2:18272583-18272602 Msa0242230:intron 30.0%
! AAAACCCTTTTCCATTAGAT+GGG - chr2_2:18272659-18272678 None:intergenic 30.0%
!!! ATTTTGGGATTACTTACACA+AGG + chr2_2:18272718-18272737 Msa0242230:intron 30.0%
AAATGTTGAACATATGAAGC+AGG + chr2_2:18272830-18272849 Msa0242230:intron 30.0%
AATGTTGAACATATGAAGCA+GGG + chr2_2:18272831-18272850 Msa0242230:intron 30.0%
GTTGAAATTTACCAGTGTTT+GGG + chr2_2:18272853-18272872 Msa0242230:intron 30.0%
AATTTAAGAACTTTGTCTCG+AGG - chr2_2:18272919-18272938 None:intergenic 30.0%
! GAAATTTCTAAAAGCATAGG+AGG + chr2_2:18273023-18273042 Msa0242230:intron 30.0%
GTTCATCATTACAATGCAAA+GGG - chr2_2:18273152-18273171 None:intergenic 30.0%
! TGATGAACCTTTTTATGTTC+TGG + chr2_2:18273164-18273183 Msa0242230:intron 30.0%
!! AAGTACTTGTTTAGTTCTGA+AGG + chr2_2:18273218-18273237 Msa0242230:intron 30.0%
TTTACAAATACAGCCAAAAC+AGG - chr2_2:18273330-18273349 None:intergenic 30.0%
TATAATTGCAAACGAACTAG+AGG + chr2_2:18273447-18273466 Msa0242230:CDS 30.0%
TCACATCATAGTATACATTG+AGG - chr2_2:18273720-18273739 None:intergenic 30.0%
! TTTAGGACCAGAAAATTTGA+GGG - chr2_2:18273822-18273841 None:intergenic 30.0%
!! TTCCATATTTTGTTGCTTGT+TGG + chr2_2:18273917-18273936 Msa0242230:three_prime_UTR 30.0%
!! TCCATATTTTGTTGCTTGTT+GGG + chr2_2:18273918-18273937 Msa0242230:three_prime_UTR 30.0%
AGTGCAAGTAACAAAATAGT+TGG - chr2_2:18273948-18273967 None:intergenic 30.0%
CAGAAACACTAAACTACACA+CGG - chr2_2:18270436-18270455 None:intergenic 35.0%
GAACAGAATCAGAAAAATGG+AGG + chr2_2:18270475-18270494 Msa0242230:exon 35.0%
TAGTTATTGGGAATTAGAGG+GGG + chr2_2:18270765-18270784 Msa0242230:intron 35.0%
AGAGATGTGAAGTTAAGTCT+TGG + chr2_2:18271006-18271025 Msa0242230:intron 35.0%
GGAAACACAATATTCCTGTT+TGG + chr2_2:18271027-18271046 Msa0242230:intron 35.0%
!! AGTGACAGGAATGGATTAAA+TGG - chr2_2:18271071-18271090 None:intergenic 35.0%
GCTTATAATAGTGACAGGAA+TGG - chr2_2:18271080-18271099 None:intergenic 35.0%
CATTGAATAACTGACGTATC+TGG - chr2_2:18271171-18271190 None:intergenic 35.0%
! ATGCTGCAATTCATCGTTTT+TGG + chr2_2:18271492-18271511 Msa0242230:intron 35.0%
!!! ATTCATCGTTTTTGGTACCT+TGG + chr2_2:18271500-18271519 Msa0242230:intron 35.0%
!!! TTCATCGTTTTTGGTACCTT+GGG + chr2_2:18271501-18271520 Msa0242230:intron 35.0%
! CCTCTACCTTTTCATAACTT+TGG - chr2_2:18271535-18271554 None:intergenic 35.0%
CCAAAGTTATGAAAAGGTAG+AGG + chr2_2:18271532-18271551 Msa0242230:intron 35.0%
AAAGAAACACTCAAACCTTG+AGG + chr2_2:18271604-18271623 Msa0242230:intron 35.0%
CATGGAGTTGAATATTGGTA+TGG + chr2_2:18271664-18271683 Msa0242230:intron 35.0%
GAGTTGAATATTGGTATGGA+TGG + chr2_2:18271668-18271687 Msa0242230:intron 35.0%
ACAGCACTAAATTTCCTTGT+TGG - chr2_2:18271701-18271720 None:intergenic 35.0%
TAGAGATGAGAATCTTGTAC+TGG + chr2_2:18271720-18271739 Msa0242230:intron 35.0%
ATGAGAATCTTGTACTGGAT+TGG + chr2_2:18271725-18271744 Msa0242230:intron 35.0%
! CTGCTATGTTTTCTACAATG+AGG - chr2_2:18271802-18271821 None:intergenic 35.0%
CATACCAAACAACCTAAGAT+GGG - chr2_2:18271828-18271847 None:intergenic 35.0%
ACATACCAAACAACCTAAGA+TGG - chr2_2:18271829-18271848 None:intergenic 35.0%
TTTGAACTTGATGCATGGAA+GGG + chr2_2:18271941-18271960 Msa0242230:intron 35.0%
ATTTGGGGGTAAATTACACA+TGG + chr2_2:18272043-18272062 Msa0242230:intron 35.0%
! TGAAAGATCATTAGGCCTTT+TGG + chr2_2:18272077-18272096 Msa0242230:intron 35.0%
!!! ATTAGGCCTTTTGGTTTGAT+GGG + chr2_2:18272086-18272105 Msa0242230:intron 35.0%
TGAATAAGTTGCTCGGTTAA+AGG + chr2_2:18272125-18272144 Msa0242230:intron 35.0%
TCTAAGTAGAGTGGATCAAA+TGG + chr2_2:18272182-18272201 Msa0242230:intron 35.0%
! TGAGCAGTAAATTTTCCTTC+AGG - chr2_2:18272254-18272273 None:intergenic 35.0%
GGTGCCTACAAAGAAAAAAT+AGG + chr2_2:18272364-18272383 Msa0242230:intron 35.0%
TGTTAGAGTTTCATCTTAGG+TGG + chr2_2:18272440-18272459 Msa0242230:intron 35.0%
AGTTTCATCTTAGGTGGTTT+GGG + chr2_2:18272446-18272465 Msa0242230:intron 35.0%
GAGAAAACCTGTATAAGCAA+TGG + chr2_2:18272477-18272496 Msa0242230:intron 35.0%
AAACCTGTATAAGCAATGGT+TGG + chr2_2:18272481-18272500 Msa0242230:intron 35.0%
AACCTGTATAAGCAATGGTT+GGG + chr2_2:18272482-18272501 Msa0242230:intron 35.0%
AGTCATACAGTAAGAGATAG+AGG + chr2_2:18272527-18272546 Msa0242230:intron 35.0%
AAATAGGTTATCTTCGGACA+TGG + chr2_2:18272589-18272608 Msa0242230:intron 35.0%
! CAAAACCCTTTTCCATTAGA+TGG - chr2_2:18272660-18272679 None:intergenic 35.0%
! CATCTAATGGAAAAGGGTTT+TGG + chr2_2:18272658-18272677 Msa0242230:intron 35.0%
GAAGTTCATGAAAGACCATT+AGG + chr2_2:18272744-18272763 Msa0242230:intron 35.0%
!!! ATTAGGCCTTTTGGCTTAAT+GGG + chr2_2:18272761-18272780 Msa0242230:intron 35.0%
!! GTAATGACTAGGTTGGTTAA+AGG + chr2_2:18272796-18272815 Msa0242230:intron 35.0%
GGTTGAAATTTACCAGTGTT+TGG + chr2_2:18272852-18272871 Msa0242230:intron 35.0%
AACATGCTAGTGTAAGTACT+AGG + chr2_2:18272884-18272903 Msa0242230:intron 35.0%
TAGTGTAAGTACTAGGAACA+GGG + chr2_2:18272891-18272910 Msa0242230:intron 35.0%
! GAAAACTGGCACAGTTTTTA+GGG - chr2_2:18272985-18273004 None:intergenic 35.0%
! TGAAAACTGGCACAGTTTTT+AGG - chr2_2:18272986-18273005 None:intergenic 35.0%
ATCTTTGTTGCGCAAATGAA+TGG - chr2_2:18273077-18273096 None:intergenic 35.0%
GGTTCATCATTACAATGCAA+AGG - chr2_2:18273153-18273172 None:intergenic 35.0%
ATAACAGTTGGACAAAAAGG+TGG + chr2_2:18273547-18273566 Msa0242230:intron 35.0%
TAGTGTGGTAGAAACAAACA+AGG + chr2_2:18273632-18273651 Msa0242230:exon 35.0%
AGTGTGGTAGAAACAAACAA+GGG + chr2_2:18273633-18273652 Msa0242230:exon 35.0%
TTAGGACCAGAAAATTTGAG+GGG - chr2_2:18273821-18273840 None:intergenic 35.0%
!! CTTTAGGACCAGAAAATTTG+AGG - chr2_2:18273823-18273842 None:intergenic 35.0%
TGGAATGATAAAACCATGGA+AGG - chr2_2:18273902-18273921 None:intergenic 35.0%
AGAATCAGAAAAATGGAGGG+TGG + chr2_2:18270479-18270498 Msa0242230:exon 40.0%
ATTGGAATGCTATGCGTTTG+AGG + chr2_2:18270654-18270673 Msa0242230:CDS 40.0%
!!! TTAGAGGGGGTGTAGTTTTT+TGG + chr2_2:18270778-18270797 Msa0242230:intron 40.0%
!!! TAGAGGGGGTGTAGTTTTTT+GGG + chr2_2:18270779-18270798 Msa0242230:intron 40.0%
! GTGCAGTAAAGTTTTCCTCA+AGG - chr2_2:18271622-18271641 None:intergenic 40.0%
TACTGCACAACTATAAGGCT+TGG + chr2_2:18271634-18271653 Msa0242230:intron 40.0%
TGCTGCATGGAGTTGAATAT+TGG + chr2_2:18271659-18271678 Msa0242230:intron 40.0%
TGGATGGTATACAACCAACA+AGG + chr2_2:18271684-18271703 Msa0242230:intron 40.0%
CTTTGAACTTGATGCATGGA+AGG + chr2_2:18271940-18271959 Msa0242230:intron 40.0%
TGATGCATGGAAGGGATTTA+TGG + chr2_2:18271949-18271968 Msa0242230:intron 40.0%
ATTTGCAAAAAAGGTGGGGT+CGG - chr2_2:18271994-18272013 None:intergenic 40.0%
!!! CATTAGGCCTTTTGGTTTGA+TGG + chr2_2:18272085-18272104 Msa0242230:intron 40.0%
!!! TTAGGCCTTTTGGTTTGATG+GGG + chr2_2:18272087-18272106 Msa0242230:intron 40.0%
AATAGCCCCATCAAACCAAA+AGG - chr2_2:18272095-18272114 None:intergenic 40.0%
ATAAGTTGCTCGGTTAAAGG+TGG + chr2_2:18272128-18272147 Msa0242230:intron 40.0%
ACAAGCACGGTTAAAATGCT+GGG + chr2_2:18272152-18272171 Msa0242230:intron 40.0%
AAGTAGAGTGGATCAAATGG+AGG + chr2_2:18272185-18272204 Msa0242230:intron 40.0%
! GAAGTACCATTCAAACCTGA+AGG + chr2_2:18272236-18272255 Msa0242230:intron 40.0%
GCATGGAATTGAATGTTGGA+TGG + chr2_2:18272294-18272313 Msa0242230:intron 40.0%
GAGTTTCATCTTAGGTGGTT+TGG + chr2_2:18272445-18272464 Msa0242230:intron 40.0%
TTATCTTCGGACATGGTACA+TGG + chr2_2:18272596-18272615 Msa0242230:intron 40.0%
ATATAGCCGATCCCATCTAA+TGG + chr2_2:18272645-18272664 Msa0242230:intron 40.0%
! CCTTTTCCATTAGATGGGAT+CGG - chr2_2:18272654-18272673 None:intergenic 40.0%
CGATCCCATCTAATGGAAAA+GGG + chr2_2:18272652-18272671 Msa0242230:intron 40.0%
!!! GGGTTTTGGTTGATGCAAAT+AGG + chr2_2:18272672-18272691 Msa0242230:intron 40.0%
! TGGTTGATGCAAATAGGTTG+AGG + chr2_2:18272678-18272697 Msa0242230:intron 40.0%
! TGAAAGACCATTAGGCCTTT+TGG + chr2_2:18272752-18272771 Msa0242230:intron 40.0%
CATTAAGCCAAAAGGCCTAA+TGG - chr2_2:18272762-18272781 None:intergenic 40.0%
!!! CATTAGGCCTTTTGGCTTAA+TGG + chr2_2:18272760-18272779 Msa0242230:intron 40.0%
AATGGTCCCATTAAGCCAAA+AGG - chr2_2:18272770-18272789 None:intergenic 40.0%
CCTAGTCATTACCAAGTGAA+TGG - chr2_2:18272788-18272807 None:intergenic 40.0%
!! CCATTCACTTGGTAATGACT+AGG + chr2_2:18272785-18272804 Msa0242230:intron 40.0%
!! TCACTTGGTAATGACTAGGT+TGG + chr2_2:18272789-18272808 Msa0242230:intron 40.0%
CTAGTGTAAGTACTAGGAAC+AGG + chr2_2:18272890-18272909 Msa0242230:intron 40.0%
ACAAATACAGCCAAAACAGG+AGG - chr2_2:18273327-18273346 None:intergenic 40.0%
TTCCTTGTCTCTCTAAACTG+TGG + chr2_2:18273356-18273375 Msa0242230:intron 40.0%
TACCACAGTTTAGAGAGACA+AGG - chr2_2:18273361-18273380 None:intergenic 40.0%
CTAGTGAAGCAAATGACGAA+TGG - chr2_2:18273615-18273634 None:intergenic 40.0%
TAGGACCAGAAAATTTGAGG+GGG - chr2_2:18273820-18273839 None:intergenic 40.0%
GCCCAACAAGCAACAAAATA+TGG - chr2_2:18273922-18273941 None:intergenic 40.0%
ACACTAAACTACACACGGTG+AGG - chr2_2:18270431-18270450 None:intergenic 45.0%
ACTCTGCTGTTGCATGTCTT+TGG - chr2_2:18270534-18270553 None:intergenic 45.0%
! GAACACGAGTTGAATCAAGC+TGG - chr2_2:18270595-18270614 None:intergenic 45.0%
AACTCGTGTTCAAGAAGCCA+TGG + chr2_2:18270604-18270623 Msa0242230:CDS 45.0%
!!! AGAGGGGGTGTAGTTTTTTG+GGG + chr2_2:18270780-18270799 Msa0242230:intron 45.0%
AACTTTGGATGAAGGACCCA+AGG - chr2_2:18271520-18271539 None:intergenic 45.0%
ATAAGGCTTGGAATGCTGCA+TGG + chr2_2:18271646-18271665 Msa0242230:intron 45.0%
ACATAGCAGAGTCCCATCTT+AGG + chr2_2:18271813-18271832 Msa0242230:intron 45.0%
! GAGTCCCATCTTAGGTTGTT+TGG + chr2_2:18271821-18271840 Msa0242230:intron 45.0%
CACAAGCACGGTTAAAATGC+TGG + chr2_2:18272151-18272170 Msa0242230:intron 45.0%
CAAGCACGGTTAAAATGCTG+GGG + chr2_2:18272153-18272172 Msa0242230:intron 45.0%
ACGGTTAAAATGCTGGGGAT+AGG + chr2_2:18272158-18272177 Msa0242230:intron 45.0%
GGGATAGGATCTAAGTAGAG+TGG + chr2_2:18272173-18272192 Msa0242230:intron 45.0%
CTCCCAACCATTGCTTATAC+AGG - chr2_2:18272487-18272506 None:intergenic 45.0%
!! GGAGTGTTGAGAAGATGGAA+AGG + chr2_2:18272503-18272522 Msa0242230:intron 45.0%
CCGATCCCATCTAATGGAAA+AGG + chr2_2:18272651-18272670 Msa0242230:intron 45.0%
GCTTAATGGGACCATTCACT+TGG + chr2_2:18272774-18272793 Msa0242230:intron 45.0%
GTTGTAACAGACCCAAACAC+TGG - chr2_2:18272867-18272886 None:intergenic 45.0%
!!! ACTGGCACAGTTTTTAGGGT+GGG - chr2_2:18272981-18273000 None:intergenic 45.0%
!! AACTGGCACAGTTTTTAGGG+TGG - chr2_2:18272982-18273001 None:intergenic 45.0%
! CTCCATTGTACCTCCTGTTT+TGG + chr2_2:18273314-18273333 Msa0242230:intron 45.0%
! AGCCAAAACAGGAGGTACAA+TGG - chr2_2:18273319-18273338 None:intergenic 45.0%
TGGACAAAAAGGTGGCTGAA+AGG + chr2_2:18273555-18273574 Msa0242230:CDS 45.0%
ATCACCTTTATGCTCACGCA+AGG - chr2_2:18273582-18273601 None:intergenic 45.0%
CGTCATTTGCTTCACTAGTG+TGG + chr2_2:18273617-18273636 Msa0242230:exon 45.0%
ACCAGAAAATTTGAGGGGGT+GGG - chr2_2:18273816-18273835 None:intergenic 45.0%
TCAAATGTGACAGCCTTCCA+TGG + chr2_2:18273886-18273905 Msa0242230:three_prime_UTR 45.0%
AAAATGGAGGGTGGAGACGA+AGG + chr2_2:18270488-18270507 Msa0242230:exon 50.0%
GCGGTCAGTGAGTTTATCGA+AGG - chr2_2:18270561-18270580 None:intergenic 50.0%
AGAAGCAGCAATGGAAGCCA+TGG - chr2_2:18270624-18270643 None:intergenic 50.0%
AGCTTCAGCAGAAGCAGCAA+TGG - chr2_2:18270633-18270652 None:intergenic 50.0%
CTGCTTCTGCTGAAGCTGAT+TGG + chr2_2:18270636-18270655 Msa0242230:CDS 50.0%
!!! GAGGGGGTGTAGTTTTTTGG+GGG + chr2_2:18270781-18270800 Msa0242230:intron 50.0%
!!! GGGTGTAGTTTTTTGGGGGA+GGG + chr2_2:18270785-18270804 Msa0242230:intron 50.0%
!!! GGTGTAGTTTTTTGGGGGAG+GGG + chr2_2:18270786-18270805 Msa0242230:intron 50.0%
!!! GTGTAGTTTTTTGGGGGAGG+GGG + chr2_2:18270787-18270806 Msa0242230:intron 50.0%
GGTTAAAGGTGGCACAAGCA+CGG + chr2_2:18272139-18272158 Msa0242230:intron 50.0%
! TTAGGTGGTTTGGGCATGTG+CGG + chr2_2:18272455-18272474 Msa0242230:intron 50.0%
!! GGTTGGGAGTGTTGAGAAGA+TGG + chr2_2:18272498-18272517 Msa0242230:intron 50.0%
TTCGGACATGGTACATGGCA+GGG + chr2_2:18272601-18272620 Msa0242230:intron 50.0%
! TGGTACATGGCAGGGCATTA+TGG + chr2_2:18272609-18272628 Msa0242230:intron 50.0%
!!! CTGGCACAGTTTTTAGGGTG+GGG - chr2_2:18272980-18272999 None:intergenic 50.0%
AGGACCTTGCGTGAGCATAA+AGG + chr2_2:18273575-18273594 Msa0242230:CDS 50.0%
CAGAAAATTTGAGGGGGTGG+GGG - chr2_2:18273814-18273833 None:intergenic 50.0%
CCAGAAAATTTGAGGGGGTG+GGG - chr2_2:18273815-18273834 None:intergenic 50.0%
GACCAGAAAATTTGAGGGGG+TGG - chr2_2:18273817-18273836 None:intergenic 50.0%
GGAAGGCTGTCACATTTGAG+TGG - chr2_2:18273885-18273904 None:intergenic 50.0%
TGGAGACGAAGGAGTGGAGA+TGG + chr2_2:18270499-18270518 Msa0242230:CDS 55.0%
AGACGAAGGAGTGGAGATGG+TGG + chr2_2:18270502-18270521 Msa0242230:CDS 55.0%
CAAGCTGGCGATCTTCAACG+CGG - chr2_2:18270580-18270599 None:intergenic 55.0%
!!! GGGGTGTAGTTTTTTGGGGG+AGG + chr2_2:18270784-18270803 Msa0242230:intron 55.0%
!!! TTTTTTGGGGGAGGGGGTGT+TGG + chr2_2:18270793-18270812 Msa0242230:intron 55.0%
CTTCGGACATGGTACATGGC+AGG + chr2_2:18272600-18272619 Msa0242230:intron 55.0%
! CCCCACCCCCTCAAATTTTC+TGG + chr2_2:18273812-18273831 Msa0242230:three_prime_UTR 55.0%
GGAGGGTGGAGACGAAGGAG+TGG + chr2_2:18270493-18270512 Msa0242230:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 18270409 18273973 18270409 ID=Msa0242230;Name=Msa0242230
chr2_2 mRNA 18270409 18273973 18270409 ID=Msa0242230-mRNA-1;Parent=Msa0242230;Name=Msa0242230-mRNA-1;_AED=0.02;_eAED=0.02;_QI=82|1|1|1|1|1|3|339|110
chr2_2 exon 18270409 18270675 18270409 ID=Msa0242230-mRNA-1:exon:7435;Parent=Msa0242230-mRNA-1
chr2_2 exon 18273402 18273468 18273402 ID=Msa0242230-mRNA-1:exon:7436;Parent=Msa0242230-mRNA-1
chr2_2 exon 18273554 18273973 18273554 ID=Msa0242230-mRNA-1:exon:7437;Parent=Msa0242230-mRNA-1
chr2_2 five_prime_UTR 18270409 18270490 18270409 ID=Msa0242230-mRNA-1:five_prime_utr;Parent=Msa0242230-mRNA-1
chr2_2 CDS 18270491 18270675 18270491 ID=Msa0242230-mRNA-1:cds;Parent=Msa0242230-mRNA-1
chr2_2 CDS 18273402 18273468 18273402 ID=Msa0242230-mRNA-1:cds;Parent=Msa0242230-mRNA-1
chr2_2 CDS 18273554 18273634 18273554 ID=Msa0242230-mRNA-1:cds;Parent=Msa0242230-mRNA-1
chr2_2 three_prime_UTR 18273635 18273973 18273635 ID=Msa0242230-mRNA-1:three_prime_utr;Parent=Msa0242230-mRNA-1
Gene Sequence

>Msa0242230

ATGGAGGGTGGAGACGAAGGAGTGGAGATGGTGGTTGATTCCAAAGACATGCAACAGCAGAGTAAAGCCTTCGATAAACTCACTGACCGCGTTGAAGATCGCCAGCTTGATTCAACTCGTGTTCAAGAAGCCATGGCTTCCATTGCTGCTTCTGCTGAAGCTGATTGGAATGCTATGCGTTTGAGGGAGAAAGAATTAGCTGCTGTTAAGATAAATGCAGCAGATGTTGATATAATTGCAAACGAACTAGAGTTGGACAAAAAGGTGGCTGAAAGGACCTTGCGTGAGCATAAAGGTGATGCAGTTGCTGCCATTCGTCATTTGCTTCACTAG

Protein sequence

>Msa0242230

MEGGDEGVEMVVDSKDMQQQSKAFDKLTDRVEDRQLDSTRVQEAMASIAASAEADWNAMRLREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLLH*