AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1230430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1230430 MtrunA17_Chr8g0370511 55.109 597 164 5 2 494 403 999 0.0 611
Msa1230430 MtrunA17_Chr5g0420341 55.184 598 160 6 3 494 405 1000 0.0 596
Msa1230430 MtrunA17_Chr8g0339021 53.963 593 173 7 2 494 397 989 0.0 589
Msa1230430 MtrunA17_Chr5g0420331 54.515 598 164 6 3 494 405 1000 0.0 584
Msa1230430 MtrunA17_Chr8g0339031 53.910 601 164 9 1 494 412 1006 0.0 579
Msa1230430 MtrunA17_Chr8g0339011 53.457 593 169 8 2 488 397 988 0.0 572
Msa1230430 MtrunA17_Chr5g0414761 52.773 595 175 8 2 491 189 782 0.0 565
Msa1230430 MtrunA17_Chr8g0338981 52.181 596 178 8 2 491 401 995 0.0 555
Msa1230430 MtrunA17_Chr8g0338881 53.744 601 170 8 1 494 431 1030 0.0 555
Msa1230430 MtrunA17_Chr8g0338901 51.920 599 181 9 2 494 424 1021 0.0 546
Msa1230430 MtrunA17_Chr3g0085731 52.174 598 166 10 2 490 417 1003 0.0 542
Msa1230430 MtrunA17_Chr7g0223531 52.483 604 175 8 2 494 413 1015 0.0 541
Msa1230430 MtrunA17_Chr2g0296451 68.389 329 84 3 185 494 191 518 1.17e-139 414
Msa1230430 MtrunA17_Chr8g0338841 50.820 427 114 5 138 490 35 439 7.66e-130 387
Msa1230430 MtrunA17_Chr7g0257531 41.137 598 237 8 3 491 63 654 2.07e-129 391
Msa1230430 MtrunA17_Chr5g0430541 46.139 518 163 11 84 494 1 509 1.12e-127 384
Msa1230430 MtrunA17_Chr6g0455131 40.294 613 241 7 3 491 488 1099 1.04e-126 396
Msa1230430 MtrunA17_Chr8g0352211 45.756 542 210 13 2 490 415 925 2.28e-123 397
Msa1230430 MtrunA17_Chr6g0455211 40.101 596 246 8 2 490 447 1038 3.43e-122 382
Msa1230430 MtrunA17_Chr4g0005851 39.444 611 245 9 3 491 433 1040 8.90e-122 382
Msa1230430 MtrunA17_Chr6g0454821 40.661 605 242 7 2 490 443 1046 1.14e-121 383
Msa1230430 MtrunA17_Chr6g0455551 39.024 615 245 9 2 490 479 1089 9.81e-120 377
Msa1230430 MtrunA17_Chr4g0005591 39.379 612 244 9 3 490 473 1081 1.13e-119 377
Msa1230430 MtrunA17_Chr6g0454961 38.862 615 246 9 3 490 430 1041 4.61e-118 373
Msa1230430 MtrunA17_Chr6g0454971 39.933 601 242 10 3 491 444 1037 5.98e-117 369
Msa1230430 MtrunA17_Chr6g0454851 38.487 608 257 9 2 494 495 1100 1.02e-115 367
Msa1230430 MtrunA17_Chr4g0005871 39.607 611 236 11 3 490 529 1129 2.21e-115 367
Msa1230430 MtrunA17_Chr4g0005891 39.733 599 235 10 2 476 443 1039 3.68e-115 365
Msa1230430 MtrunA17_Chr6g0455191 39.052 612 247 8 3 490 712 1321 4.32e-115 369
Msa1230430 MtrunA17_Chr6g0454831 39.708 617 234 11 3 490 404 1011 6.99e-115 363
Msa1230430 MtrunA17_Chr6g0454951 39.174 605 249 11 2 490 489 1090 3.73e-113 360
Msa1230430 MtrunA17_Chr4g0009141 37.847 613 239 12 3 490 921 1516 1.60e-109 357
Msa1230430 MtrunA17_Chr4g0009301 37.561 615 238 12 3 490 941 1536 8.66e-108 352
Msa1230430 MtrunA17_Chr4g0009171 37.255 612 244 11 2 490 1127 1721 4.71e-106 347
Msa1230430 MtrunA17_Chr4g0009171 36.418 335 125 5 3 250 401 734 2.08e-52 191
Msa1230430 MtrunA17_Chr4g0009041 37.194 613 243 12 3 490 909 1504 6.95e-104 340
Msa1230430 MtrunA17_Chr4g0009041 36.275 102 62 2 2 101 405 505 3.59e-11 66.2
Msa1230430 MtrunA17_Chr4g0009101 37.152 611 244 11 3 490 939 1532 2.79e-102 336
Msa1230430 MtrunA17_Chr4g0009101 33.071 127 78 3 3 127 436 557 2.07e-12 70.1
Msa1230430 MtrunA17_Chr4g0009241 36.807 595 252 9 3 490 943 1520 1.72e-101 334
Msa1230430 MtrunA17_Chr4g0009401 36.467 617 248 10 3 490 897 1498 6.07e-100 329
Msa1230430 MtrunA17_Chr7g0255681 36.052 613 266 11 2 490 1411 2021 1.02e-95 317
Msa1230430 MtrunA17_Chr8g0352221 53.560 323 78 4 186 491 646 913 1.71e-91 301
Msa1230430 MtrunA17_Chr6g0455031 36.928 612 255 13 3 491 423 1026 6.37e-91 299
Msa1230430 MtrunA17_Chr3g0114381 62.232 233 69 4 275 491 2 231 1.93e-89 275
Msa1230430 MtrunA17_Chr4g0010711 35.644 606 266 15 3 490 915 1514 1.28e-87 294
Msa1230430 MtrunA17_Chr4g0010711 39.048 105 63 1 3 107 414 517 2.16e-11 66.6
Msa1230430 MtrunA17_Chr4g0014831 42.043 421 150 6 1 330 187 604 7.40e-87 279
Msa1230430 MtrunA17_Chr6g0455221 38.568 433 164 8 3 338 409 836 8.82e-74 253
Msa1230430 MtrunA17_Chr6g0455221 32.432 222 114 3 308 494 893 1113 6.45e-25 108
Msa1230430 MtrunA17_Chr7g0234901 34.211 532 222 11 84 490 1 529 1.66e-73 243
Msa1230430 MtrunA17_Chr6g0455251 45.455 319 157 4 185 490 804 1118 8.20e-70 241
Msa1230430 MtrunA17_Chr6g0455251 33.333 342 135 7 3 255 419 756 3.37e-41 158
Msa1230430 MtrunA17_Chr4g0009361 42.075 347 142 7 186 490 183 512 4.89e-68 231
Msa1230430 MtrunA17_Chr8g0343791 63.218 174 59 3 222 392 1 172 1.54e-65 209
Msa1230430 MtrunA17_Chr3g0114401 54.673 214 66 2 2 184 284 497 1.42e-60 207
Msa1230430 MtrunA17_Chr3g0085541 43.000 300 122 7 2 267 416 700 1.02e-57 203
Msa1230430 MtrunA17_Chr3g0085531 54.974 191 72 2 313 490 4 193 1.63e-57 194
Msa1230430 MtrunA17_Chr4g0009011 40.468 299 131 4 224 490 1 284 1.17e-54 187
Msa1230430 MtrunA17_Chr8g0338821 52.332 193 49 3 30 185 1 187 2.28e-53 178
Msa1230430 MtrunA17_Chr6g0454931 40.345 290 131 4 3 250 471 760 3.74e-52 189
Msa1230430 MtrunA17_Chr6g0454871 51.852 189 90 1 183 371 65 252 1.06e-51 176
Msa1230430 MtrunA17_Chr6g0455181 41.509 265 135 5 185 437 67 323 8.31e-49 171
Msa1230430 MtrunA17_Chr8g0338931 79.412 102 21 0 389 490 32 133 2.42e-48 168
Msa1230430 MtrunA17_Chr8g0343801 68.657 134 41 1 2 134 408 541 5.03e-47 171
Msa1230430 MtrunA17_Chr8g0338801 64.516 124 43 1 372 494 75 198 5.95e-45 160
Msa1230430 MtrunA17_Chr6g0454901 39.367 221 102 2 3 191 215 435 3.42e-41 153
Msa1230430 MtrunA17_Chr8g0338851 66.364 110 37 0 1 110 305 414 1.32e-40 151
Msa1230430 MtrunA17_Chr8g0343781 83.544 79 13 0 412 490 1 79 7.76e-38 133
Msa1230430 MtrunA17_Chr8g0338811 75.904 83 20 0 185 267 26 108 4.97e-35 127
Msa1230430 MtrunA17_Chr6g0454911 35.470 234 131 5 275 491 2 232 8.38e-33 125
Msa1230430 MtrunA17_Chr4g0041441 28.188 298 169 8 2 255 397 693 7.94e-30 124
Msa1230430 MtrunA17_Chr4g0009281 39.205 176 74 3 30 174 1 174 3.83e-29 113
Msa1230430 MtrunA17_Chr4g0020591 27.684 354 194 8 2 317 407 736 3.28e-28 119
Msa1230430 MtrunA17_Chr4g0041231 27.463 335 169 8 2 269 414 741 5.00e-27 115
Msa1230430 MtrunA17_Chr6g0482111 26.995 426 244 15 2 377 410 818 7.85e-27 115
Msa1230430 MtrunA17_Chr4g0042011 27.425 299 168 8 2 255 416 710 2.21e-26 113
Msa1230430 MtrunA17_Chr4g0009351 62.353 85 32 0 3 87 316 400 6.26e-26 109
Msa1230430 MtrunA17_Chr6g0486311 28.378 296 165 9 2 255 414 704 9.48e-26 111
Msa1230430 MtrunA17_Chr4g0041941 28.283 297 169 8 2 256 405 699 1.65e-25 110
Msa1230430 MtrunA17_Chr4g0041431 29.018 224 125 4 2 193 230 451 1.96e-25 110
Msa1230430 MtrunA17_Chr3g0081531 29.904 311 171 10 2 270 401 706 4.76e-25 109
Msa1230430 MtrunA17_Chr8g0353001 27.431 288 156 7 3 240 409 693 1.59e-24 107
Msa1230430 MtrunA17_Chr4g0041931 28.417 278 153 4 2 234 417 693 2.04e-24 107
Msa1230430 MtrunA17_Chr6g0485991 28.763 299 164 10 2 256 414 707 2.34e-24 107
Msa1230430 MtrunA17_Chr6g0486221 27.063 303 167 9 2 255 414 711 2.40e-24 107
Msa1230430 MtrunA17_Chr6g0486481 27.181 298 170 8 2 256 414 707 3.17e-24 107
Msa1230430 MtrunA17_Chr7g0248121 27.350 351 165 7 2 263 410 759 6.33e-24 105
Msa1230430 MtrunA17_Chr8g0348541 28.571 364 166 9 2 275 415 774 1.17e-23 105
Msa1230430 MtrunA17_Chr8g0351551 30.222 225 119 3 3 190 409 632 2.47e-23 104
Msa1230430 MtrunA17_Chr5g0439951 27.562 283 151 6 1 231 396 676 3.37e-23 103
Msa1230430 MtrunA17_Chr4g0041611 25.828 302 174 6 2 255 412 711 3.73e-23 103
Msa1230430 MtrunA17_Chr3g0135541 29.870 231 104 6 314 488 40 268 9.53e-23 99.0
Msa1230430 MtrunA17_Chr8g0342911 29.778 225 120 3 3 190 422 645 1.63e-22 101
Msa1230430 MtrunA17_Chr6g0486521 26.797 306 168 9 2 256 414 714 2.18e-22 101
Msa1230430 MtrunA17_Chr8g0350071 51.961 102 47 2 2 102 188 288 2.82e-22 97.8
Msa1230430 MtrunA17_Chr2g0299561 28.289 304 164 11 2 259 414 709 4.88e-22 100
Msa1230430 MtrunA17_Chr4g0041241 26.780 295 174 7 2 255 414 707 6.21e-22 99.8
Msa1230430 MtrunA17_Chr4g0041951 28.223 287 173 6 2 256 470 755 7.02e-22 99.8
Msa1230430 MtrunA17_Chr2g0319851 26.087 276 158 8 3 236 447 718 1.15e-21 99.0
Msa1230430 MtrunA17_Chr6g0486271 27.622 286 162 9 2 247 414 694 2.08e-21 97.8
Msa1230430 MtrunA17_Chr6g0486731 27.425 299 164 9 3 255 415 706 2.84e-21 97.8
Msa1230430 MtrunA17_Chr6g0486301 26.552 290 167 7 2 250 414 698 3.68e-21 97.4
Msa1230430 MtrunA17_Chr3g0084731 27.839 273 154 6 2 233 411 681 4.59e-21 97.1
Msa1230430 MtrunA17_Chr8g0342201 37.857 140 85 2 3 141 446 584 7.09e-21 96.3
Msa1230430 MtrunA17_Chr8g0342791 28.014 282 149 8 2 231 382 661 1.05e-20 96.3
Msa1230430 MtrunA17_Chr6g0486361 25.862 290 169 9 2 250 414 698 1.13e-20 95.9
Msa1230430 MtrunA17_Chr3g0084721 29.670 273 149 6 2 233 413 683 1.29e-20 95.9
Msa1230430 MtrunA17_Chr8g0363851 26.923 364 152 11 3 255 228 588 1.58e-20 95.5
Msa1230430 MtrunA17_Chr8g0372681 37.654 162 86 5 3 160 408 558 3.28e-20 94.4
Msa1230430 MtrunA17_Chr4g0009211 53.012 83 39 0 412 494 6 88 3.94e-20 86.7
Msa1230430 MtrunA17_Chr3g0084841 27.609 297 168 7 2 255 414 706 4.09e-20 94.4
Msa1230430 MtrunA17_Chr3g0135511 41.000 100 58 1 389 488 18 116 8.08e-20 87.0
Msa1230430 MtrunA17_Chr7g0242781 29.204 226 123 7 2 193 188 410 8.85e-20 91.7
Msa1230430 MtrunA17_Chr7g0248521 27.675 271 139 8 2 223 409 671 1.11e-19 92.8
Msa1230430 MtrunA17_Chr3g0135571 41.000 100 58 1 389 488 18 116 1.37e-19 86.3
Msa1230430 MtrunA17_Chr7g0248511 26.496 351 168 7 2 263 416 765 1.41e-19 92.4
Msa1230430 MtrunA17_Chr4g0009021 56.944 72 31 0 3 74 77 148 5.30e-19 84.0
Msa1230430 MtrunA17_Chr7g0242811 28.505 214 116 5 2 181 436 646 1.21e-18 89.7
Msa1230430 MtrunA17_Chr3g0118981 25.138 362 160 9 2 255 412 770 1.34e-18 89.4
Msa1230430 MtrunA17_Chr6g0455171 50.526 95 42 2 46 137 2 94 1.35e-18 82.0
Msa1230430 MtrunA17_Chr8g0342131 26.625 323 168 11 5 285 415 710 1.74e-18 89.0
Msa1230430 MtrunA17_Chr8g0342641 23.614 415 233 12 2 350 388 784 1.76e-18 89.4
Msa1230430 MtrunA17_Chr2g0299851 25.000 356 177 8 2 270 408 760 1.84e-18 89.4
Msa1230430 MtrunA17_Chr4g0014821 42.157 102 57 2 389 490 14 113 3.05e-18 82.4
Msa1230430 MtrunA17_Chr2g0299811 24.507 355 178 9 3 270 257 608 3.77e-18 87.8
Msa1230430 MtrunA17_Chr2g0299921 34.810 158 94 4 2 158 407 556 5.49e-18 87.8
Msa1230430 MtrunA17_Chr4g0005291 27.036 307 168 11 2 255 459 762 5.82e-18 87.4
Msa1230430 MtrunA17_Chr6g0478741 29.073 313 153 13 4 258 404 705 1.03e-17 86.7
Msa1230430 MtrunA17_Chr3g0119601 27.922 308 150 9 3 241 406 710 1.05e-17 86.7
Msa1230430 MtrunA17_Chr1g0172831 25.170 294 165 6 1 255 395 672 1.16e-17 86.3
Msa1230430 MtrunA17_Chr2g0319921 27.574 272 150 9 3 230 417 685 1.21e-17 86.7
Msa1230430 MtrunA17_Chr4g0010521 24.496 347 169 9 4 261 405 747 1.28e-17 86.7
Msa1230430 MtrunA17_Chr1g0172811 25.170 294 165 6 1 255 407 684 1.67e-17 86.3
Msa1230430 MtrunA17_Chr2g0299791 38.095 147 85 3 2 147 409 550 1.99e-17 85.9
Msa1230430 MtrunA17_Chr4g0010651 26.032 315 185 10 4 276 407 715 2.14e-17 85.9
Msa1230430 MtrunA17_Chr4g0005391 27.036 307 168 10 2 255 449 752 2.38e-17 85.5
Msa1230430 MtrunA17_Chr6g0474761 33.831 201 89 6 2 163 414 609 2.71e-17 85.1
Msa1230430 MtrunA17_Chr4g0008981 48.101 79 41 0 412 490 6 84 3.66e-17 79.0
Msa1230430 MtrunA17_Chr2g0299881 37.267 161 90 5 2 160 413 564 4.13e-17 85.1
Msa1230430 MtrunA17_Chr6g0474801 26.633 398 212 13 2 335 414 795 6.81e-17 84.0
Msa1230430 MtrunA17_Chr8g0342691 24.535 269 149 6 14 231 410 675 7.27e-17 84.3
Msa1230430 MtrunA17_Chr4g0005331 25.155 322 160 11 2 244 473 792 9.33e-17 83.6
Msa1230430 MtrunA17_Chr7g0242751 27.240 279 150 8 3 234 440 712 1.07e-16 83.2
Msa1230430 MtrunA17_Chr8g0353371 33.129 163 93 5 2 158 421 573 1.21e-16 83.2
Msa1230430 MtrunA17_Chr3g0102261 24.784 347 149 9 4 244 412 752 1.47e-16 83.2
Msa1230430 MtrunA17_Chr3g0102131 24.567 289 150 7 4 230 412 694 2.40e-16 82.4
Msa1230430 MtrunA17_Chr2g0296461 76.596 47 11 0 2 48 190 236 2.56e-16 78.6
Msa1230430 MtrunA17_Chr5g0417071 26.557 305 194 10 2 295 153 438 3.92e-16 81.3
Msa1230430 MtrunA17_Chr6g0479761 25.519 337 161 12 2 255 268 597 4.07e-16 81.3
Msa1230430 MtrunA17_Chr3g0102121 24.658 292 145 8 4 230 412 693 4.23e-16 81.6
Msa1230430 MtrunA17_Chr2g0298531 22.380 353 172 8 2 255 409 758 5.05e-16 81.3
Msa1230430 MtrunA17_Chr8g0342621 25.092 271 147 7 15 231 412 680 5.13e-16 81.3
Msa1230430 MtrunA17_Chr2g0299841 28.390 236 141 8 2 230 450 664 5.16e-16 81.3
Msa1230430 MtrunA17_Chr6g0482511 25.627 359 157 10 2 255 427 780 5.91e-16 81.3
Msa1230430 MtrunA17_Chr3g0084851 35.625 160 94 3 2 160 413 564 7.06e-16 80.9
Msa1230430 MtrunA17_Chr4g0005101 24.221 289 172 8 2 244 443 730 1.07e-15 80.5
Msa1230430 MtrunA17_Chr5g0394041 26.829 205 114 5 12 182 27 229 1.12e-15 80.1
Msa1230430 MtrunA17_Chr4g0005401 22.807 342 182 11 2 265 414 751 1.46e-15 80.1
Msa1230430 MtrunA17_Chr6g0478841 27.900 319 144 14 3 244 403 712 1.73e-15 79.7
Msa1230430 MtrunA17_Chr6g0479841 25.407 307 170 12 2 256 70 369 1.86e-15 79.3
Msa1230430 MtrunA17_Chr2g0319821 26.577 222 126 7 3 190 446 664 2.47e-15 79.3
Msa1230430 MtrunA17_Chr5g0417041 33.333 159 95 6 2 158 71 220 3.22e-15 76.3
Msa1230430 MtrunA17_Chr6g0480051 25.237 317 155 9 3 244 194 503 3.25e-15 78.6
Msa1230430 MtrunA17_Chr1g0153511 28.169 213 116 5 2 181 364 572 3.52e-15 79.0
Msa1230430 MtrunA17_Chr6g0479631 26.994 326 167 13 2 267 411 725 4.51e-15 78.6
Msa1230430 MtrunA17_Chr8g0392051 25.431 232 131 5 2 193 184 413 4.69e-15 77.0
Msa1230430 MtrunA17_Chr7g0256881 25.680 331 149 9 13 254 413 735 5.28e-15 78.2
Msa1230430 MtrunA17_Chr7g0234891 50.000 76 38 0 2 77 324 399 6.03e-15 76.6
Msa1230430 MtrunA17_Chr3g0119001 26.000 300 141 8 2 221 412 710 6.51e-15 77.8
Msa1230430 MtrunA17_Chr5g0417081 36.567 134 81 4 2 133 194 325 8.95e-15 76.3
Msa1230430 MtrunA17_Chr4g0005371 41.000 100 54 3 2 97 189 287 9.41e-15 74.7
Msa1230430 MtrunA17_Chr8g0354701 25.146 342 158 8 2 247 406 745 9.71e-15 77.4
Msa1230430 MtrunA17_Chr6g0479701 35.172 145 77 5 2 134 418 557 1.27e-14 77.0
Msa1230430 MtrunA17_Chr2g0298291 21.813 353 174 8 2 255 404 753 1.35e-14 77.0
Msa1230430 MtrunA17_Chr4g0025741 35.976 164 90 6 2 160 412 565 1.58e-14 76.6
Msa1230430 MtrunA17_Chr6g0480421 24.784 347 176 13 3 272 271 609 1.88e-14 76.3
Msa1230430 MtrunA17_Chr6g0484161 26.140 329 162 11 2 255 436 758 1.98e-14 76.3
Msa1230430 MtrunA17_Chr6g0454861 41.772 79 46 0 416 494 1 79 3.22e-14 68.9
Msa1230430 MtrunA17_Chr6g0479731 27.687 307 160 13 4 270 412 696 3.29e-14 75.5
Msa1230430 MtrunA17_Chr7g0242801 25.472 424 240 20 11 382 493 892 4.30e-14 75.5
Msa1230430 MtrunA17_Chr6g0481331 39.474 114 61 3 1 110 456 565 4.97e-14 75.1
Msa1230430 MtrunA17_Chr4g0005261 25.357 280 155 10 2 230 399 675 1.36e-13 73.6
Msa1230430 MtrunA17_Chr6g0479821 31.250 176 100 6 2 160 415 586 1.44e-13 73.6
Msa1230430 MtrunA17_Chr4g0025751 29.644 253 145 10 2 240 412 645 1.55e-13 73.6
Msa1230430 MtrunA17_Chr6g0481191 38.655 119 58 4 3 110 103 217 1.61e-13 72.4
Msa1230430 MtrunA17_Chr4g0005731 25.000 220 122 5 4 181 399 617 6.61e-13 71.2
Msa1230430 MtrunA17_Chr6g0482321 29.545 176 103 5 3 167 434 599 7.26e-13 71.2
Msa1230430 MtrunA17_Chr4g0025831 34.940 166 91 7 2 160 412 567 8.54e-13 71.2
Msa1230430 MtrunA17_Chr6g0481221 39.655 116 57 4 4 110 414 525 8.97e-13 70.5
Msa1230430 MtrunA17_Chr6g0482491 25.606 289 172 12 3 263 419 692 9.29e-13 71.2
Msa1230430 MtrunA17_Chr8g0350801 35.714 112 64 3 3 110 430 537 9.92e-13 70.9
Msa1230430 MtrunA17_Chr6g0479671 33.333 162 95 5 3 158 413 567 1.06e-12 70.9
Msa1230430 MtrunA17_Chr6g0480451 38.053 113 61 4 3 110 478 586 1.22e-12 70.5
Msa1230430 MtrunA17_Chr4g0025701 34.146 164 92 7 2 160 412 564 1.24e-12 70.5
Msa1230430 MtrunA17_Chr6g0481141 38.462 117 59 4 3 110 464 576 1.49e-12 70.5
Msa1230430 MtrunA17_Chr6g0482351 36.607 112 63 3 3 110 438 545 2.85e-12 69.7
Msa1230430 MtrunA17_Chr6g0482471 36.607 112 63 3 3 110 438 545 3.31e-12 69.3
Msa1230430 MtrunA17_Chr3g0104861 32.576 132 87 2 2 133 400 529 3.44e-12 68.9
Msa1230430 MtrunA17_Chr6g0482441 35.780 109 68 2 3 110 405 512 3.51e-12 69.3
Msa1230430 MtrunA17_Chr6g0482141 35.780 109 68 2 3 110 444 551 3.53e-12 69.3
Msa1230430 MtrunA17_Chr6g0478451 24.695 328 162 12 2 250 415 736 4.64e-12 68.9
Msa1230430 MtrunA17_Chr3g0077971 34.821 112 65 3 3 110 432 539 4.80e-12 68.9
Msa1230430 MtrunA17_Chr2g0330121 22.014 427 270 10 2 386 225 630 5.21e-12 68.6
Msa1230430 MtrunA17_Chr6g0480181 32.298 161 99 6 1 158 403 556 5.36e-12 68.6
Msa1230430 MtrunA17_Chr6g0481251 36.522 115 65 3 3 110 270 383 5.72e-12 68.6
Msa1230430 MtrunA17_Chr1g0172541 32.824 131 81 4 3 129 406 533 6.15e-12 68.6
Msa1230430 MtrunA17_Chr1g0146421 36.607 112 62 4 3 110 413 519 7.03e-12 68.2
Msa1230430 MtrunA17_Chr6g0480461 23.077 325 175 10 2 255 463 783 3.10e-11 66.2
Msa1230430 MtrunA17_Chr6g0481011 32.704 159 90 6 2 152 419 568 7.31e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1230430 AT5G36930.3 31.877 389 169 7 2 297 402 787 2.14e-43 165
Msa1230430 AT5G36930.4 31.877 389 169 7 2 297 402 787 2.42e-43 165
Msa1230430 AT5G36930.1 31.877 389 169 7 2 297 402 787 2.42e-43 165
Msa1230430 AT5G36930.2 31.877 389 169 7 2 297 405 790 2.61e-43 165
Msa1230430 AT5G17680.1 26.140 329 176 11 2 274 402 719 2.56e-21 98.6
Msa1230430 AT5G17680.2 26.140 329 176 11 2 274 403 720 2.56e-21 98.6
Msa1230430 AT4G36140.2 25.836 329 150 10 6 247 615 936 7.14e-18 87.8
Msa1230430 AT4G36140.1 25.836 329 150 10 6 247 800 1121 8.34e-18 87.8
Msa1230430 AT5G45050.3 25.228 329 151 9 6 246 359 680 1.36e-17 86.7
Msa1230430 AT5G45050.1 25.228 329 151 9 6 246 359 680 1.37e-17 87.0
Msa1230430 AT5G45050.4 25.228 329 151 9 6 246 220 541 1.37e-17 86.7
Msa1230430 AT5G45050.2 26.809 235 115 6 6 186 359 590 7.92e-16 81.3
Msa1230430 AT5G45210.4 25.524 286 159 10 7 255 415 683 1.05e-15 80.5
Msa1230430 AT5G45210.1 25.524 286 159 10 7 255 387 655 1.08e-15 80.5
Msa1230430 AT5G45210.5 25.524 286 159 10 7 255 406 674 1.19e-15 80.5
Msa1230430 AT5G18360.1 25.890 309 169 8 2 255 404 707 2.34e-15 79.7
Msa1230430 AT5G45260.2 24.224 322 170 10 6 257 366 683 2.91e-15 79.3
Msa1230430 AT5G45260.3 24.224 322 170 10 6 257 366 683 2.91e-15 79.3
Msa1230430 AT5G45260.1 24.224 322 170 10 6 257 366 683 3.74e-15 79.3
Msa1230430 AT5G45210.2 26.977 215 119 6 7 185 415 627 1.72e-14 76.6
Msa1230430 AT1G27170.2 33.929 168 95 5 4 158 409 573 8.76e-14 74.7
Msa1230430 AT1G27170.1 33.929 168 95 5 4 158 409 573 9.98e-14 74.7
Msa1230430 AT1G72860.3 24.113 282 155 7 3 230 406 682 2.19e-13 73.6
Msa1230430 AT1G72860.2 24.113 282 155 7 3 230 406 682 2.70e-13 73.2
Msa1230430 AT4G19510.8 27.234 235 139 8 11 230 453 670 3.34e-13 72.8
Msa1230430 AT4G19510.1 27.234 235 139 8 11 230 453 670 3.34e-13 72.8
Msa1230430 AT4G16920.2 24.164 269 154 7 1 230 395 652 9.80e-13 71.6
Msa1230430 AT4G16920.8 24.164 269 154 7 1 230 395 652 9.80e-13 71.6
Msa1230430 AT4G16920.3 24.164 269 154 7 1 230 395 652 1.06e-12 71.2
Msa1230430 AT4G16920.5 24.164 269 154 7 1 230 395 652 1.06e-12 71.2
Msa1230430 AT4G16920.6 24.164 269 154 7 1 230 395 652 1.21e-12 71.2
Msa1230430 AT4G16920.4 24.164 269 154 7 1 230 395 652 1.24e-12 71.2
Msa1230430 AT4G16920.7 24.164 269 154 7 1 230 395 652 1.24e-12 71.2
Msa1230430 AT4G16920.1 24.164 269 154 7 1 230 395 652 1.33e-12 70.9
Msa1230430 AT4G16920.9 24.164 269 154 7 1 230 395 652 1.41e-12 70.9
Msa1230430 AT4G16900.3 25.087 287 177 8 1 261 390 664 3.61e-12 69.3
Msa1230430 AT5G45210.3 36.458 96 60 1 7 102 415 509 3.78e-12 68.9
Msa1230430 AT4G11170.1 25.436 287 161 10 4 245 404 682 5.61e-12 68.9
Msa1230430 AT4G16900.2 24.648 284 176 8 1 258 390 661 6.68e-12 68.6
Msa1230430 AT5G18350.1 24.011 354 187 10 2 281 423 768 7.74e-12 68.6
Msa1230430 AT4G16900.1 24.648 284 176 8 1 258 390 661 1.04e-11 68.2
Msa1230430 AT5G17970.1 23.932 234 135 5 1 193 411 642 1.43e-11 67.4

Find 92 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCAACATCTGAAAATA+TGG 0.157765 8_2:+6436058 Msa1230430:CDS
TGGAAAACTCTTATACTTTC+TGG 0.178208 8_2:+6434949 Msa1230430:CDS
AGAAGTTCCTTCACCTTTAT+AGG 0.217046 8_2:-6435970 None:intergenic
GACATATGTTGTTTCTTTAT+CGG 0.237173 8_2:+6433862 Msa1230430:CDS
ATGAATCCATCTCAGTTCTT+TGG 0.263712 8_2:-6434494 None:intergenic
TCTCAAAACTTAGAAGTGTT+TGG 0.291479 8_2:+6435283 Msa1230430:CDS
TTCTCTTGCACTTGATCATT+GGG 0.300006 8_2:-6433784 None:intergenic
AATAAGCTATGATGGTTTAA+AGG 0.304033 8_2:+6433813 Msa1230430:CDS
GGATGCAGAGAGTAATAATA+TGG 0.305324 8_2:+6435233 Msa1230430:CDS
TTTCAGTCTTAGTATTGAAT+AGG 0.305381 8_2:-6435064 None:intergenic
GAGGTTCAAAAGATATTAAA+TGG 0.311476 8_2:+6433898 Msa1230430:CDS
CTACACCATATTTCTCCATT+TGG 0.320932 8_2:+6435183 Msa1230430:CDS
TTCCTTCTCTCATTTGGTCT+TGG 0.326713 8_2:+6435139 Msa1230430:CDS
CTCAAAACTTAGAAGTGTTT+GGG 0.326887 8_2:+6435284 Msa1230430:CDS
GTCTCGCTTGTATATCTTGA+TGG 0.329919 8_2:-6436129 None:intergenic
TTTCTCTTGCACTTGATCAT+TGG 0.333023 8_2:-6433785 None:intergenic
GTCATTGTCTTTAGTGTCCT+TGG 0.333928 8_2:+6435212 Msa1230430:CDS
AAAGAAAGATTTGAGATTTG+TGG 0.347889 8_2:-6435408 None:intergenic
TTCAGTCTTAGTATTGAATA+GGG 0.349768 8_2:-6435063 None:intergenic
AAAGAGAACAGAGAAGAGTA+TGG 0.362756 8_2:-6434307 None:intergenic
TGATGGTTTAAAGGATGATA+TGG 0.363029 8_2:+6433822 Msa1230430:CDS
ATCTCTTGGTTAGCCTATAA+AGG 0.367105 8_2:+6435957 Msa1230430:CDS
ATAGATCTCCCTTGGGAGAT+TGG 0.371384 8_2:-6434914 None:intergenic
GCTCTTTCGTTGAACTTTCA+CGG 0.385181 8_2:-6434041 None:intergenic
TGCCTCCAAATGGAGAAATA+TGG 0.397792 8_2:-6435188 None:intergenic
ATGGGAGCTGAATGTCTTAC+CGG 0.400499 8_2:+6436077 Msa1230430:CDS
CAACTTGTCATCGACACTCT+TGG 0.417571 8_2:+6435462 Msa1230430:CDS
TTCCATTGATAGATCTCCCT+TGG 0.429722 8_2:-6434922 None:intergenic
AAGAACTGAGATGGATTCAT+TGG 0.431173 8_2:+6434497 Msa1230430:CDS
AGATCTATCAATGGAAAACT+TGG 0.439193 8_2:+6434929 Msa1230430:CDS
TTTCTGTTCCCTGCATTTGA+AGG 0.446775 8_2:-6434332 None:intergenic
TTCTTGGTTAGCCTATCTCT+TGG 0.449377 8_2:+6435943 Msa1230430:intron
TGTGAACTTCATGTAGGTAT+TGG 0.452355 8_2:+6433922 Msa1230430:CDS
CACCATATTTCTCCATTTGG+AGG 0.457862 8_2:+6435186 Msa1230430:CDS
GACAATGACATGCCTCCAAA+TGG 0.466574 8_2:-6435198 None:intergenic
GATAGTAATTGTTGCATGAA+AGG 0.468935 8_2:+6436014 Msa1230430:CDS
TCATCAACATCTGAAAATAT+GGG 0.471861 8_2:+6436059 Msa1230430:CDS
TGGGCGTGGATTGATTGTTA+AGG 0.471862 8_2:+6436238 Msa1230430:CDS
AACAGAAACTGTAGAGGGAT+TGG 0.473441 8_2:+6434347 Msa1230430:CDS
TTATAGGCTAACCAAGAGAT+AGG 0.479778 8_2:-6435954 None:intergenic
TCCATTGATAGATCTCCCTT+GGG 0.487491 8_2:-6434921 None:intergenic
AAATTGAGAATAAGCTATGA+TGG 0.498635 8_2:+6433805 Msa1230430:CDS
TTCTTGCAAGCAAACAAAGA+AGG 0.500839 8_2:+6434279 Msa1230430:intron
GGATTGATTGTTAAGGTCAC+AGG 0.502850 8_2:+6436245 Msa1230430:CDS
ATACTAAGACTGAAAAGCAT+TGG 0.503832 8_2:+6435072 Msa1230430:CDS
ATCTTTCCAAAGAACTGAGA+TGG 0.513032 8_2:+6434488 Msa1230430:CDS
GTCATCGGGCATATAGTTGA+AGG 0.522490 8_2:-6434530 None:intergenic
TTCTGTTCCCTGCATTTGAA+GGG 0.524720 8_2:-6434331 None:intergenic
AAATGGAGAAATATGGTGTA+GGG 0.527281 8_2:-6435181 None:intergenic
ATATCCTTGTGTGTATATGA+AGG 0.528332 8_2:+6435099 Msa1230430:CDS
TTTGGCAATCAGTGTTGTCA+AGG 0.534597 8_2:-6435019 None:intergenic
ATGCAACAATTACTATCCTC+AGG 0.537272 8_2:-6436008 None:intergenic
TTTCCCAGATAAAAGTCATC+GGG 0.539370 8_2:-6434544 None:intergenic
GATGCAGAGAGTAATAATAT+GGG 0.543681 8_2:+6435234 Msa1230430:CDS
TTGTTCAAAGATTAACAAGT+TGG 0.547289 8_2:+6434972 Msa1230430:CDS
AATGGTTGTGAACTTCATGT+AGG 0.547628 8_2:+6433916 Msa1230430:CDS
TTTAATGATGAAGATTGGAA+AGG 0.547967 8_2:+6436164 Msa1230430:CDS
TTAACATCAAATCTAGAGAC+TGG 0.549985 8_2:+6436188 Msa1230430:CDS
CAAATGGAGAAATATGGTGT+AGG 0.550036 8_2:-6435182 None:intergenic
GGAAGAAGACATAGTGCAGA+TGG 0.560368 8_2:+6434993 Msa1230430:CDS
GAAAGTTCAACGAAAGAGCT+TGG 0.561467 8_2:+6434045 Msa1230430:CDS
TCCCAAGGGAGATCTATCAA+TGG 0.564251 8_2:+6434920 Msa1230430:CDS
ATGTTGTTTCTTTATCGGCA+AGG 0.570290 8_2:+6433867 Msa1230430:CDS
TAACTTTCCTTGCAGAGCGG+AGG 0.577479 8_2:+6433947 Msa1230430:CDS
TTCCAAGACCAAATGAGAGA+AGG 0.582080 8_2:-6435141 None:intergenic
TTACAAGCCTCCGCTCTGCA+AGG 0.583070 8_2:-6433954 None:intergenic
ATTATTACTCTCTGCATCCA+AGG 0.587992 8_2:-6435229 None:intergenic
CAGTATCAAACAAGTGTGGA+AGG 0.592525 8_2:+6434594 Msa1230430:CDS
GCATGATTTAATAAGAGACA+TGG 0.592895 8_2:+6434005 Msa1230430:CDS
ATTTCCCAGATAAAAGTCAT+CGG 0.594675 8_2:-6434545 None:intergenic
TATCGGCAAGGACAGAGTTG+AGG 0.597380 8_2:+6433879 Msa1230430:CDS
TGGTTAGCCTATAAAGGTGA+AGG 0.598830 8_2:+6435963 Msa1230430:CDS
CAAGTCTTACCAATCTCCCA+AGG 0.601218 8_2:+6434905 Msa1230430:CDS
TTTAAAGGATGATATGGCAA+AGG 0.601660 8_2:+6433828 Msa1230430:CDS
CAAGAGTGTCGATGACAAGT+TGG 0.609185 8_2:-6435461 None:intergenic
CATGATTTAATAAGAGACAT+GGG 0.612652 8_2:+6434006 Msa1230430:CDS
TGGTGTAGGGAATTTACCGT+TGG 0.620543 8_2:-6435168 None:intergenic
CTGAGATGGATTCATTGGCA+AGG 0.628367 8_2:+6434502 Msa1230430:CDS
GCAGGGAACAGAAACTGTAG+AGG 0.643682 8_2:+6434341 Msa1230430:CDS
TTGGTCTTGGAAGTCACCAA+CGG 0.648334 8_2:+6435152 Msa1230430:CDS
GAGTTGAAAACAACATCACA+TGG 0.651153 8_2:+6435384 Msa1230430:CDS
GTAATTAATAATCAAGACAC+CGG 0.652312 8_2:-6436096 None:intergenic
ACAGCAGTATCAAACAAGTG+TGG 0.654899 8_2:+6434590 Msa1230430:CDS
CAGGGAACAGAAACTGTAGA+GGG 0.655554 8_2:+6434342 Msa1230430:CDS
TCTTGGCAAGAACATATCAC+AGG 0.656511 8_2:+6435479 Msa1230430:CDS
TCTAGAGACTGGTGACAGCG+TGG 0.665473 8_2:+6436199 Msa1230430:CDS
ACAAGTGTGGAAGGAAACCA+AGG 0.670081 8_2:+6434603 Msa1230430:CDS
GAGTTAGTTGAATCTCTGAG+TGG 0.675918 8_2:-6435314 None:intergenic
CAAGATATACAAGCGAGACA+CGG 0.677627 8_2:+6436133 Msa1230430:CDS
TAATCCTTCATATACACACA+AGG 0.696540 8_2:-6435103 None:intergenic
GAATAACTTTCCTTGCAGAG+CGG 0.697831 8_2:+6433944 Msa1230430:CDS
AAGTCTTACCAATCTCCCAA+GGG 0.699541 8_2:+6434906 Msa1230430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATAAGTTTTTCTAGATT+CGG - chr8_2:6434795-6434814 None:intergenic 15.0%
!!! TTCTTTTATAGATGTATTTT+TGG - chr8_2:6435040-6435059 None:intergenic 15.0%
!! TATTATTAATTAAGAGAACA+TGG + chr8_2:6435527-6435546 Msa1230430:intron 15.0%
!!! TTTTAAGTAAAAAATGCAAA+TGG - chr8_2:6435562-6435581 None:intergenic 15.0%
!! TAATTATTATGCTATTAAAC+TGG - chr8_2:6435830-6435849 None:intergenic 15.0%
!! AATTACATAATTAACTAATC+AGG + chr8_2:6435853-6435872 Msa1230430:intron 15.0%
!!! TATTTTACGACAATAACAAT+GGG - chr8_2:6434571-6434590 None:intergenic 20.0%
! AAATTGAGAATAAGCTATGA+TGG + chr8_2:6433805-6433824 Msa1230430:CDS 25.0%
! AATAAGCTATGATGGTTTAA+AGG + chr8_2:6433813-6433832 Msa1230430:CDS 25.0%
!!! GACATATGTTGTTTCTTTAT+CGG + chr8_2:6433862-6433881 Msa1230430:CDS 25.0%
! GAGGTTCAAAAGATATTAAA+TGG + chr8_2:6433898-6433917 Msa1230430:CDS 25.0%
! CATGATTTAATAAGAGACAT+GGG + chr8_2:6434006-6434025 Msa1230430:CDS 25.0%
!! GTATTTTACGACAATAACAA+TGG - chr8_2:6434572-6434591 None:intergenic 25.0%
! GAAAAGAAAATATGATACCT+TGG - chr8_2:6434623-6434642 None:intergenic 25.0%
! ATTTATCTTCTTGCAGTTAT+TGG + chr8_2:6434701-6434720 Msa1230430:intron 25.0%
!!! TCGGTAATTTTGAAAAATCA+GGG - chr8_2:6434776-6434795 None:intergenic 25.0%
!!! TTCGGTAATTTTGAAAAATC+AGG - chr8_2:6434777-6434796 None:intergenic 25.0%
! TTGTTCAAAGATTAACAAGT+TGG + chr8_2:6434972-6434991 Msa1230430:CDS 25.0%
!! TTCAGTCTTAGTATTGAATA+GGG - chr8_2:6435066-6435085 None:intergenic 25.0%
!! TTTCAGTCTTAGTATTGAAT+AGG - chr8_2:6435067-6435086 None:intergenic 25.0%
!! AAAGAAAGATTTGAGATTTG+TGG - chr8_2:6435411-6435430 None:intergenic 25.0%
! GAATGTAGAAAAACTGAAAA+AGG - chr8_2:6435662-6435681 None:intergenic 25.0%
! GTATAAGATGAAGATAAACT+AGG - chr8_2:6435746-6435765 None:intergenic 25.0%
! ATGTTTAAGAAATAACAGCT+CGG - chr8_2:6435768-6435787 None:intergenic 25.0%
! GTGTCAATCAAAATTCTAAA+AGG - chr8_2:6435796-6435815 None:intergenic 25.0%
! ACTAATTGTTCTAGTAACTT+TGG + chr8_2:6435899-6435918 Msa1230430:intron 25.0%
! TTCATCAACATCTGAAAATA+TGG + chr8_2:6436058-6436077 Msa1230430:CDS 25.0%
! TCATCAACATCTGAAAATAT+GGG + chr8_2:6436059-6436078 Msa1230430:CDS 25.0%
! GTAATTAATAATCAAGACAC+CGG - chr8_2:6436099-6436118 None:intergenic 25.0%
!! TGTCTTTTAATGATGAAGAT+TGG + chr8_2:6436159-6436178 Msa1230430:CDS 25.0%
! TTTAATGATGAAGATTGGAA+AGG + chr8_2:6436164-6436183 Msa1230430:CDS 25.0%
TGATGGTTTAAAGGATGATA+TGG + chr8_2:6433822-6433841 Msa1230430:CDS 30.0%
TTTAAAGGATGATATGGCAA+AGG + chr8_2:6433828-6433847 Msa1230430:CDS 30.0%
GCATGATTTAATAAGAGACA+TGG + chr8_2:6434005-6434024 Msa1230430:CDS 30.0%
AATAATACATCAACTTGCCA+GGG - chr8_2:6434259-6434278 None:intergenic 30.0%
AAATAATACATCAACTTGCC+AGG - chr8_2:6434260-6434279 None:intergenic 30.0%
!! TTTGAGTACTGATACTTTCA+AGG + chr8_2:6434401-6434420 Msa1230430:intron 30.0%
ATTTCCCAGATAAAAGTCAT+CGG - chr8_2:6434548-6434567 None:intergenic 30.0%
GTTTCAAAGAAAAATTAGCG+AGG - chr8_2:6434681-6434700 None:intergenic 30.0%
!! CGGTAATTTTGAAAAATCAG+GGG - chr8_2:6434775-6434794 None:intergenic 30.0%
TCTACTTCTGTTGAATTTCA+AGG + chr8_2:6434876-6434895 Msa1230430:intron 30.0%
AGATCTATCAATGGAAAACT+TGG + chr8_2:6434929-6434948 Msa1230430:CDS 30.0%
TGGAAAACTCTTATACTTTC+TGG + chr8_2:6434949-6434968 Msa1230430:CDS 30.0%
! ATACTAAGACTGAAAAGCAT+TGG + chr8_2:6435072-6435091 Msa1230430:CDS 30.0%
ATATCCTTGTGTGTATATGA+AGG + chr8_2:6435099-6435118 Msa1230430:CDS 30.0%
TAATCCTTCATATACACACA+AGG - chr8_2:6435106-6435125 None:intergenic 30.0%
! ATGTTTTTCCTTCTCTCATT+TGG + chr8_2:6435133-6435152 Msa1230430:CDS 30.0%
AAATGGAGAAATATGGTGTA+GGG - chr8_2:6435184-6435203 None:intergenic 30.0%
GATGCAGAGAGTAATAATAT+GGG + chr8_2:6435234-6435253 Msa1230430:CDS 30.0%
!! TCTCAAAACTTAGAAGTGTT+TGG + chr8_2:6435283-6435302 Msa1230430:CDS 30.0%
!! CTCAAAACTTAGAAGTGTTT+GGG + chr8_2:6435284-6435303 Msa1230430:CDS 30.0%
!!! ATGTGATGTTGTTTTCAACT+CGG - chr8_2:6435385-6435404 None:intergenic 30.0%
!!! TCTTTGAGATCACTTTTGAT+TGG + chr8_2:6435426-6435445 Msa1230430:CDS 30.0%
!! AGATCACTTTTGATTGGAAT+GGG + chr8_2:6435432-6435451 Msa1230430:CDS 30.0%
! AGTCTAAACTTAGGGATTTT+TGG - chr8_2:6435586-6435605 None:intergenic 30.0%
ATGTCACAAGTCTAAACTTA+GGG - chr8_2:6435594-6435613 None:intergenic 30.0%
TATGTCACAAGTCTAAACTT+AGG - chr8_2:6435595-6435614 None:intergenic 30.0%
GATAGTAATTGTTGCATGAA+AGG + chr8_2:6436014-6436033 Msa1230430:CDS 30.0%
TTAACATCAAATCTAGAGAC+TGG + chr8_2:6436188-6436207 Msa1230430:CDS 30.0%
! TGGAGAATTTTGTAGCTTTT+GGG + chr8_2:6436219-6436238 Msa1230430:CDS 30.0%
TTCTCTTGCACTTGATCATT+GGG - chr8_2:6433787-6433806 None:intergenic 35.0%
TTTCTCTTGCACTTGATCAT+TGG - chr8_2:6433788-6433807 None:intergenic 35.0%
!! ATGTTGTTTCTTTATCGGCA+AGG + chr8_2:6433867-6433886 Msa1230430:CDS 35.0%
AATGGTTGTGAACTTCATGT+AGG + chr8_2:6433916-6433935 Msa1230430:CDS 35.0%
TGTGAACTTCATGTAGGTAT+TGG + chr8_2:6433922-6433941 Msa1230430:CDS 35.0%
TTGGTAAACGAAGTAGATTG+TGG + chr8_2:6434064-6434083 Msa1230430:intron 35.0%
TTCTTGCAAGCAAACAAAGA+AGG + chr8_2:6434279-6434298 Msa1230430:intron 35.0%
AAAGAGAACAGAGAAGAGTA+TGG - chr8_2:6434310-6434329 None:intergenic 35.0%
AGTACTCAAAAAATCCCTAC+TGG - chr8_2:6434391-6434410 None:intergenic 35.0%
ATCTTTCCAAAGAACTGAGA+TGG + chr8_2:6434488-6434507 Msa1230430:CDS 35.0%
ATGAATCCATCTCAGTTCTT+TGG - chr8_2:6434497-6434516 None:intergenic 35.0%
! AAGAACTGAGATGGATTCAT+TGG + chr8_2:6434497-6434516 Msa1230430:CDS 35.0%
TTTCCCAGATAAAAGTCATC+GGG - chr8_2:6434547-6434566 None:intergenic 35.0%
! CTTTTCACACTCAAAGTTGA+TGG + chr8_2:6434637-6434656 Msa1230430:intron 35.0%
CAAAGAAAAATTAGCGAGGT+GGG - chr8_2:6434677-6434696 None:intergenic 35.0%
TCAAAGAAAAATTAGCGAGG+TGG - chr8_2:6434678-6434697 None:intergenic 35.0%
TGTCAGTCATTCTAGATACT+AGG + chr8_2:6434743-6434762 Msa1230430:intron 35.0%
GAATTCTCCATGTTTGTATG+AGG + chr8_2:6434825-6434844 Msa1230430:intron 35.0%
TCAACAGAAGTAGATTCCTA+AGG - chr8_2:6434870-6434889 None:intergenic 35.0%
CAAATGGAGAAATATGGTGT+AGG - chr8_2:6435185-6435204 None:intergenic 35.0%
CTACACCATATTTCTCCATT+TGG + chr8_2:6435183-6435202 Msa1230430:CDS 35.0%
ATTATTACTCTCTGCATCCA+AGG - chr8_2:6435232-6435251 None:intergenic 35.0%
GGATGCAGAGAGTAATAATA+TGG + chr8_2:6435233-6435252 Msa1230430:CDS 35.0%
GAGTTGAAAACAACATCACA+TGG + chr8_2:6435384-6435403 Msa1230430:CDS 35.0%
!! GAGATCACTTTTGATTGGAA+TGG + chr8_2:6435431-6435450 Msa1230430:CDS 35.0%
!! GATCACTTTTGATTGGAATG+GGG + chr8_2:6435433-6435452 Msa1230430:CDS 35.0%
! TCATACCTTTTTCCAGACTA+TGG + chr8_2:6435698-6435717 Msa1230430:intron 35.0%
AAAAGAAAACAGCCATAGTC+TGG - chr8_2:6435713-6435732 None:intergenic 35.0%
CAAGAAGGATAATTGTCACT+AGG - chr8_2:6435929-6435948 None:intergenic 35.0%
CTAGTGACAATTATCCTTCT+TGG + chr8_2:6435927-6435946 Msa1230430:intron 35.0%
TTATAGGCTAACCAAGAGAT+AGG - chr8_2:6435957-6435976 None:intergenic 35.0%
!! ATCTCTTGGTTAGCCTATAA+AGG + chr8_2:6435957-6435976 Msa1230430:CDS 35.0%
AGAAGTTCCTTCACCTTTAT+AGG - chr8_2:6435973-6435992 None:intergenic 35.0%
!!! TGTACTTTTTCAAGTTCCTG+AGG + chr8_2:6435992-6436011 Msa1230430:CDS 35.0%
ATGCAACAATTACTATCCTC+AGG - chr8_2:6436011-6436030 None:intergenic 35.0%
! GTGGAGAATTTTGTAGCTTT+TGG + chr8_2:6436218-6436237 Msa1230430:CDS 35.0%
GAATAACTTTCCTTGCAGAG+CGG + chr8_2:6433944-6433963 Msa1230430:CDS 40.0%
GCTCTTTCGTTGAACTTTCA+CGG - chr8_2:6434044-6434063 None:intergenic 40.0%
GAAAGTTCAACGAAAGAGCT+TGG + chr8_2:6434045-6434064 Msa1230430:CDS 40.0%
AAGTAGATTGTGGTATCGTG+AGG + chr8_2:6434074-6434093 Msa1230430:intron 40.0%
AGTAGATTGTGGTATCGTGA+GGG + chr8_2:6434075-6434094 Msa1230430:intron 40.0%
! TCTCTTTTCCCTTCAAATGC+AGG + chr8_2:6434323-6434342 Msa1230430:CDS 40.0%
! CTCTTTTCCCTTCAAATGCA+GGG + chr8_2:6434324-6434343 Msa1230430:CDS 40.0%
TTCTGTTCCCTGCATTTGAA+GGG - chr8_2:6434334-6434353 None:intergenic 40.0%
TTTCTGTTCCCTGCATTTGA+AGG - chr8_2:6434335-6434354 None:intergenic 40.0%
AACAGAAACTGTAGAGGGAT+TGG + chr8_2:6434347-6434366 Msa1230430:CDS 40.0%
!!! TGTAGAGGGATTGGTTTTGA+AGG + chr8_2:6434356-6434375 Msa1230430:CDS 40.0%
! TATGCCCGATGACTTTTATC+TGG + chr8_2:6434540-6434559 Msa1230430:CDS 40.0%
! ATGCCCGATGACTTTTATCT+GGG + chr8_2:6434541-6434560 Msa1230430:CDS 40.0%
ACAGCAGTATCAAACAAGTG+TGG + chr8_2:6434590-6434609 Msa1230430:CDS 40.0%
CAGTATCAAACAAGTGTGGA+AGG + chr8_2:6434594-6434613 Msa1230430:CDS 40.0%
CATGTTTGTATGAGGTACAC+CGG + chr8_2:6434833-6434852 Msa1230430:intron 40.0%
TAGATTCCTAAGGTCTCCAA+TGG - chr8_2:6434860-6434879 None:intergenic 40.0%
AAGTCTTACCAATCTCCCAA+GGG + chr8_2:6434906-6434925 Msa1230430:CDS 40.0%
TCCATTGATAGATCTCCCTT+GGG - chr8_2:6434924-6434943 None:intergenic 40.0%
TTCCATTGATAGATCTCCCT+TGG - chr8_2:6434925-6434944 None:intergenic 40.0%
TTTGGCAATCAGTGTTGTCA+AGG - chr8_2:6435022-6435041 None:intergenic 40.0%
TTCCTTCTCTCATTTGGTCT+TGG + chr8_2:6435139-6435158 Msa1230430:CDS 40.0%
TTCCAAGACCAAATGAGAGA+AGG - chr8_2:6435144-6435163 None:intergenic 40.0%
CACCATATTTCTCCATTTGG+AGG + chr8_2:6435186-6435205 Msa1230430:CDS 40.0%
TGCCTCCAAATGGAGAAATA+TGG - chr8_2:6435191-6435210 None:intergenic 40.0%
GTCATTGTCTTTAGTGTCCT+TGG + chr8_2:6435212-6435231 Msa1230430:CDS 40.0%
GAGTTAGTTGAATCTCTGAG+TGG - chr8_2:6435317-6435336 None:intergenic 40.0%
TCTTGGCAAGAACATATCAC+AGG + chr8_2:6435479-6435498 Msa1230430:CDS 40.0%
AACAGCCATAGTCTGGAAAA+AGG - chr8_2:6435706-6435725 None:intergenic 40.0%
AATCAGGTGCTCATGATACA+TGG + chr8_2:6435869-6435888 Msa1230430:intron 40.0%
AAGAGATAGGCTAACCAAGA+AGG - chr8_2:6435944-6435963 None:intergenic 40.0%
!! TTCTTGGTTAGCCTATCTCT+TGG + chr8_2:6435943-6435962 Msa1230430:intron 40.0%
!! TGGTTAGCCTATAAAGGTGA+AGG + chr8_2:6435963-6435982 Msa1230430:CDS 40.0%
GTCTCGCTTGTATATCTTGA+TGG - chr8_2:6436132-6436151 None:intergenic 40.0%
CAAGATATACAAGCGAGACA+CGG + chr8_2:6436133-6436152 Msa1230430:CDS 40.0%
! AATTTTGTAGCTTTTGGGCG+TGG + chr8_2:6436224-6436243 Msa1230430:CDS 40.0%
GGATTGATTGTTAAGGTCAC+AGG + chr8_2:6436245-6436264 Msa1230430:CDS 40.0%
GTAGATTGTGGTATCGTGAG+GGG + chr8_2:6434076-6434095 Msa1230430:intron 45.0%
CAGGGAACAGAAACTGTAGA+GGG + chr8_2:6434342-6434361 Msa1230430:CDS 45.0%
! TGAAGGTGCAAAGAACCAGT+AGG + chr8_2:6434373-6434392 Msa1230430:intron 45.0%
! GAAGGTGCAAAGAACCAGTA+GGG + chr8_2:6434374-6434393 Msa1230430:intron 45.0%
GTGATAGATAGTCTCCTGTG+AGG - chr8_2:6434467-6434486 None:intergenic 45.0%
! CTGAGATGGATTCATTGGCA+AGG + chr8_2:6434502-6434521 Msa1230430:CDS 45.0%
GTCATCGGGCATATAGTTGA+AGG - chr8_2:6434533-6434552 None:intergenic 45.0%
ACAAGTGTGGAAGGAAACCA+AGG + chr8_2:6434603-6434622 Msa1230430:CDS 45.0%
CGGTGTACCTCATACAAACA+TGG - chr8_2:6434835-6434854 None:intergenic 45.0%
CAAGTCTTACCAATCTCCCA+AGG + chr8_2:6434905-6434924 Msa1230430:CDS 45.0%
ATAGATCTCCCTTGGGAGAT+TGG - chr8_2:6434917-6434936 None:intergenic 45.0%
TCCCAAGGGAGATCTATCAA+TGG + chr8_2:6434920-6434939 Msa1230430:CDS 45.0%
GGAAGAAGACATAGTGCAGA+TGG + chr8_2:6434993-6435012 Msa1230430:CDS 45.0%
!! TTGGTCTTGGAAGTCACCAA+CGG + chr8_2:6435152-6435171 Msa1230430:CDS 45.0%
TGGTGTAGGGAATTTACCGT+TGG - chr8_2:6435171-6435190 None:intergenic 45.0%
GACAATGACATGCCTCCAAA+TGG - chr8_2:6435201-6435220 None:intergenic 45.0%
!! CAAGAGTGTCGATGACAAGT+TGG - chr8_2:6435464-6435483 None:intergenic 45.0%
CAACTTGTCATCGACACTCT+TGG + chr8_2:6435462-6435481 Msa1230430:CDS 45.0%
ATGGGAGCTGAATGTCTTAC+CGG + chr8_2:6436077-6436096 Msa1230430:CDS 45.0%
! TGGGCGTGGATTGATTGTTA+AGG + chr8_2:6436238-6436257 Msa1230430:CDS 45.0%
!! TAATTAATAATAATAAAGTA+AGG - chr8_2:6435519-6435538 None:intergenic 5.0%
TATCGGCAAGGACAGAGTTG+AGG + chr8_2:6433879-6433898 Msa1230430:CDS 50.0%
TAACTTTCCTTGCAGAGCGG+AGG + chr8_2:6433947-6433966 Msa1230430:CDS 50.0%
AGTGTGTGTAAGTTGCACCC+TGG + chr8_2:6434239-6434258 Msa1230430:intron 50.0%
GCAGGGAACAGAAACTGTAG+AGG + chr8_2:6434341-6434360 Msa1230430:CDS 50.0%
CTTGATCATGCTGTCCTCAC+AGG + chr8_2:6434450-6434469 Msa1230430:intron 50.0%
TATGAGGTACACCGGTCCAT+TGG + chr8_2:6434841-6434860 Msa1230430:intron 50.0%
TCCTAAGGTCTCCAATGGAC+CGG - chr8_2:6434855-6434874 None:intergenic 50.0%
TTACAAGCCTCCGCTCTGCA+AGG - chr8_2:6433957-6433976 None:intergenic 55.0%
ACCGGTCCATTGGAGACCTT+AGG + chr8_2:6434851-6434870 Msa1230430:intron 55.0%
TCTAGAGACTGGTGACAGCG+TGG + chr8_2:6436199-6436218 Msa1230430:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 6433754 6436286 6433754 ID=Msa1230430;Name=Msa1230430
chr8_2 mRNA 6433754 6436286 6433754 ID=Msa1230430-mRNA-1;Parent=Msa1230430;Name=Msa1230430-mRNA-1;_AED=0.18;_eAED=0.19;_QI=0|0|0|1|1|1|5|0|496
chr8_2 exon 6433754 6434066 6433754 ID=Msa1230430-mRNA-1:exon:2398;Parent=Msa1230430-mRNA-1
chr8_2 exon 6434289 6434377 6434289 ID=Msa1230430-mRNA-1:exon:2399;Parent=Msa1230430-mRNA-1
chr8_2 exon 6434472 6434624 6434472 ID=Msa1230430-mRNA-1:exon:2400;Parent=Msa1230430-mRNA-1
chr8_2 exon 6434898 6435500 6434898 ID=Msa1230430-mRNA-1:exon:2401;Parent=Msa1230430-mRNA-1
chr8_2 exon 6435954 6436286 6435954 ID=Msa1230430-mRNA-1:exon:2402;Parent=Msa1230430-mRNA-1
chr8_2 CDS 6433754 6434066 6433754 ID=Msa1230430-mRNA-1:cds;Parent=Msa1230430-mRNA-1
chr8_2 CDS 6434289 6434377 6434289 ID=Msa1230430-mRNA-1:cds;Parent=Msa1230430-mRNA-1
chr8_2 CDS 6434472 6434624 6434472 ID=Msa1230430-mRNA-1:cds;Parent=Msa1230430-mRNA-1
chr8_2 CDS 6434898 6435500 6434898 ID=Msa1230430-mRNA-1:cds;Parent=Msa1230430-mRNA-1
chr8_2 CDS 6435954 6436286 6435954 ID=Msa1230430-mRNA-1:cds;Parent=Msa1230430-mRNA-1
Gene Sequence

>Msa1230430

ATGAGTGTACTGTCAAAAATAAAGAGAATTCCCAATGATCAAGTGCAAGAGAAATTGAGAATAAGCTATGATGGTTTAAAGGATGATATGGCAAAGGATAGATTTCTTGACATATGTTGTTTCTTTATCGGCAAGGACAGAGTTGAGGTTCAAAAGATATTAAATGGTTGTGAACTTCATGTAGGTATTGGAATAACTTTCCTTGCAGAGCGGAGGCTTGTAAAAATTGAAAAGAATAACAAGCTTAGAATGCATGATTTAATAAGAGACATGGGAAGAGAAATTGTCCGTGAAAGTTCAACGAAAGAGCTTGCAAACAAAGAAGGTTTATCCATACTCTTCTCTGTTCTCTTTTCCCTTCAAATGCAGGGAACAGAAACTGTAGAGGGATTGGTTTTGAAGGAGACTATCTATCACTATCTTTCCAAAGAACTGAGATGGATTCATTGGCAAGGATGTACCTTCAACTATATGCCCGATGACTTTTATCTGGGAAATCCCATTGTTATTGTCGTAAAATACAGCAGTATCAAACAAGTGTGGAAGGAAACCAAGGACTGTACAAGTCTTACCAATCTCCCAAGGGAGATCTATCAATGGAAAACTTGGAAAACTCTTATACTTTCTGGTTGTTCAAAGATTAACAAGTTGGAAGAAGACATAGTGCAGATGGAATCCTTGACAACACTGATTGCCAAAAATACATCTATAAAAGAAGTTCCCTATTCAATACTAAGACTGAAAAGCATTGGATATATATCCTTGTGTGTATATGAAGGATTATCATGTGATGTTTTTCCTTCTCTCATTTGGTCTTGGAAGTCACCAACGGTAAATTCCCTACACCATATTTCTCCATTTGGAGGCATGTCATTGTCTTTAGTGTCCTTGGATGCAGAGAGTAATAATATGGGATATCGATCATCAGTGCTTACGAGTCTCTCAAAACTTAGAAGTGTTTGGGTTCAATGCCACTCAGAGATTCAACTAACTCAAGAATTAAGAAAATTTGTTGATGATCTATATGATGTAAAGTTTACCGAGTTGAAAACAACATCACATGGACCACAAATCTCAAATCTTTCTTTGAGATCACTTTTGATTGGAATGGGGAGTTTCCAACTTGTCATCGACACTCTTGGCAAGAACATATCACAGCCTATCTCTTGGTTAGCCTATAAAGGTGAAGGAACTTCTGTACTTTTTCAAGTTCCTGAGGATAGTAATTGTTGCATGAAAGGAATAATCTTATGTGTTGTTTATTCATCAACATCTGAAAATATGGGAGCTGAATGTCTTACCGGTGTCTTGATTATTAATTACACAAAGTGCACCATCAAGATATACAAGCGAGACACGGTTATGTCTTTTAATGATGAAGATTGGAAAGGTTTAACATCAAATCTAGAGACTGGTGACAGCGTGGAGAATTTTGTAGCTTTTGGGCGTGGATTGATTGTTAAGGTCACAGGCTCACAGCTGCATATCTAA

Protein sequence

>Msa1230430

MSVLSKIKRIPNDQVQEKLRISYDGLKDDMAKDRFLDICCFFIGKDRVEVQKILNGCELHVGIGITFLAERRLVKIEKNNKLRMHDLIRDMGREIVRESSTKELANKEGLSILFSVLFSLQMQGTETVEGLVLKETIYHYLSKELRWIHWQGCTFNYMPDDFYLGNPIVIVVKYSSIKQVWKETKDCTSLTNLPREIYQWKTWKTLILSGCSKINKLEEDIVQMESLTTLIAKNTSIKEVPYSILRLKSIGYISLCVYEGLSCDVFPSLIWSWKSPTVNSLHHISPFGGMSLSLVSLDAESNNMGYRSSVLTSLSKLRSVWVQCHSEIQLTQELRKFVDDLYDVKFTELKTTSHGPQISNLSLRSLLIGMGSFQLVIDTLGKNISQPISWLAYKGEGTSVLFQVPEDSNCCMKGIILCVVYSSTSENMGAECLTGVLIINYTKCTIKIYKRDTVMSFNDEDWKGLTSNLETGDSVENFVAFGRGLIVKVTGSQLHI*