AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0503120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0503120 MtrunA17_Chr3g0101881 95.192 104 5 0 1 104 85 188 1.32e-69 206
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0503120 AT3G13120.3 95.146 103 5 0 2 104 89 191 3.88e-69 205
Msa0503120 AT3G13120.2 95.146 103 5 0 2 104 89 191 3.88e-69 205
Msa0503120 AT3G13120.1 95.146 103 5 0 2 104 89 191 3.88e-69 205

Find 33 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAATCCATGTGCATAATT+TGG 0.219282 3_4:+46074495 None:intergenic
GACACAGTGAATTCGCTTCT+TGG 0.315569 3_4:+46074942 None:intergenic
TGCATCCAGTATCTGCTTGC+AGG 0.346889 3_4:+46075011 None:intergenic
GCTCTAAATATATTTGCTTC+AGG 0.347187 3_4:-46074770 Msa0503120:exon
TGTGTACGTGTGGAGATTTA+AGG 0.348074 3_4:+46074920 None:intergenic
AAACTAACAAAATGATCATT+TGG 0.362526 3_4:+46074636 None:intergenic
GGATTCCTGCAAGCAGATAC+TGG 0.366808 3_4:-46075016 Msa0503120:CDS
TTCTCATTATGTTGTCATCT+AGG 0.397505 3_4:-46074614 Msa0503120:three_prime_UTR
TTCTTGGTTGGTAAAGGAAC+AGG 0.402200 3_4:+46074958 None:intergenic
AGACTTACATTACATTGAAT+AGG 0.410551 3_4:+46074547 None:intergenic
GAATCTATTGTTTGTGCTGT+AGG 0.413081 3_4:+46074838 None:intergenic
AACTTCAACTTCCTAGTAAT+AGG 0.416007 3_4:-46074722 Msa0503120:three_prime_UTR
GCAAATATCTATGTGACAAC+AGG 0.420997 3_4:+46074574 None:intergenic
TTACTTGGTCCCCTTGATAG+AGG 0.436195 3_4:-46075037 Msa0503120:CDS
AATCAAGCTTAGATCTTACT+TGG 0.443706 3_4:-46075052 Msa0503120:CDS
TCGACTCATTTCCTATTACT+AGG 0.459472 3_4:+46074711 None:intergenic
ATTCGCTTCTTGGTTGGTAA+AGG 0.474280 3_4:+46074952 None:intergenic
ATGCAGCTTGATCTTCCTGC+TGG 0.477604 3_4:-46074811 Msa0503120:CDS
GATGAGTTCTGATCTCGAAA+TGG 0.486839 3_4:+46074884 None:intergenic
CTTGCAGGAATCCTCTATCA+AGG 0.519406 3_4:+46075026 None:intergenic
ATGTTTGAACTCAATTCAGT+TGG 0.541671 3_4:-46076499 Msa0503120:five_prime_UTR
CAGTGAATTCGCTTCTTGGT+TGG 0.546112 3_4:+46074946 None:intergenic
ACTTCGACATCAACGCCAGC+AGG 0.555474 3_4:+46074796 None:intergenic
CATTGGGGATAATGCAGACA+TGG 0.557328 3_4:-46076404 Msa0503120:intron
CACACGTACACAAGGATGCT+CGG 0.558591 3_4:-46074909 Msa0503120:CDS
AAAGAAATACATTCAGAGAG+TGG 0.565246 3_4:+46074666 None:intergenic
TTAAGACAGAAAATATGTTG+TGG 0.573239 3_4:+46074446 None:intergenic
ATTCTTCCAAATTATGCACA+TGG 0.574714 3_4:-46074501 Msa0503120:three_prime_UTR
TTGCAGGAATCCTCTATCAA+GGG 0.586905 3_4:+46075027 None:intergenic
CGAGCATCCTTGTGTACGTG+TGG 0.612723 3_4:+46074910 None:intergenic
ATAGGAAATGAGTCGATACT+CGG 0.624257 3_4:-46074704 Msa0503120:three_prime_UTR
TAAATCTCCACACGTACACA+AGG 0.632451 3_4:-46074917 Msa0503120:CDS
TGCAGGAATCCTCTATCAAG+GGG 0.633408 3_4:+46075028 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATATCACATTAATT+CGG + chr3_4:46075043-46075062 None:intergenic 10.0%
!! AAAAATATATCACATTAATT+CGG + chr3_4:46075043-46075062 None:intergenic 10.0%
!! AAAATATATCACATTAATTC+GGG + chr3_4:46075042-46075061 None:intergenic 15.0%
!! AACAGTGAAATAATAAAATA+AGG + chr3_4:46075214-46075233 None:intergenic 15.0%
!!! TATTTTATTATTTCACTGTT+TGG - chr3_4:46075214-46075233 Msa0503120:intron 15.0%
!! TAAAAAAATGCATTAAAATC+TGG + chr3_4:46075490-46075509 None:intergenic 15.0%
!! AAAATATATCACATTAATTC+GGG + chr3_4:46075042-46075061 None:intergenic 15.0%
!! AACAGTGAAATAATAAAATA+AGG + chr3_4:46075214-46075233 None:intergenic 15.0%
!!! TATTTTATTATTTCACTGTT+TGG - chr3_4:46075214-46075233 Msa0503120:intron 15.0%
!! TAAAAAAATGCATTAAAATC+TGG + chr3_4:46075490-46075509 None:intergenic 15.0%
!! ACATATTAAATGACTGAAAA+TGG + chr3_4:46074689-46074708 None:intergenic 20.0%
!! TCAATTTGTAAATTGTGTTT+AGG - chr3_4:46074850-46074869 Msa0503120:CDS 20.0%
!! AAGAATGAAAAAGCTAAATA+GGG + chr3_4:46075307-46075326 None:intergenic 20.0%
!! AAACTAACAAAATGATCATT+TGG + chr3_4:46076353-46076372 None:intergenic 20.0%
!! ACATATTAAATGACTGAAAA+TGG + chr3_4:46074689-46074708 None:intergenic 20.0%
!! TCAATTTGTAAATTGTGTTT+AGG - chr3_4:46074850-46074869 Msa0503120:CDS 20.0%
!! AAGAATGAAAAAGCTAAATA+GGG + chr3_4:46075307-46075326 None:intergenic 20.0%
!! AAACTAACAAAATGATCATT+TGG + chr3_4:46076353-46076372 None:intergenic 20.0%
! TCAAACATTTAGAAAAACGT+AGG + chr3_4:46074475-46074494 None:intergenic 25.0%
! TCTTTGTGATAAAAATGTCT+TGG - chr3_4:46074512-46074531 Msa0503120:three_prime_UTR 25.0%
!!! AAAAATGTCTTGGTGTTTTT+AGG - chr3_4:46074522-46074541 Msa0503120:three_prime_UTR 25.0%
!!! GATTTGCTATTTTCAATAGT+TGG - chr3_4:46074615-46074634 Msa0503120:three_prime_UTR 25.0%
!! GGTTTATATTTGTTTGCTTT+TGG - chr3_4:46074636-46074655 Msa0503120:three_prime_UTR 25.0%
!!! TTATATTTGTTTGCTTTTGG+AGG - chr3_4:46074639-46074658 Msa0503120:three_prime_UTR 25.0%
! ATGTAATAGCAATGAAATCA+TGG - chr3_4:46074705-46074724 Msa0503120:three_prime_UTR 25.0%
! TGTAATAGCAATGAAATCAT+GGG - chr3_4:46074706-46074725 Msa0503120:three_prime_UTR 25.0%
! TTACAAATTGAGTGTATGTT+TGG + chr3_4:46074841-46074860 None:intergenic 25.0%
!! TTTTTGGATGAAAAAAGTGA+TGG + chr3_4:46075131-46075150 None:intergenic 25.0%
!! TTTTTCATCCAAAAAATCGA+AGG - chr3_4:46075136-46075155 Msa0503120:intron 25.0%
! AGCTTACATTGTTAATGAAA+AGG - chr3_4:46075163-46075182 Msa0503120:intron 25.0%
! GAAGAATGAAAAAGCTAAAT+AGG + chr3_4:46075308-46075327 None:intergenic 25.0%
!! GAGTTAACTGATGATTTTTA+TGG - chr3_4:46075800-46075819 Msa0503120:intron 25.0%
!!! TGTTTCTTCGAATTTTTAGA+TGG - chr3_4:46075892-46075911 Msa0503120:intron 25.0%
! AGACTTACATTACATTGAAT+AGG + chr3_4:46076442-46076461 None:intergenic 25.0%
! ATAAATCCATGTGCATAATT+TGG + chr3_4:46076494-46076513 None:intergenic 25.0%
! TCAAACATTTAGAAAAACGT+AGG + chr3_4:46074475-46074494 None:intergenic 25.0%
! TCTTTGTGATAAAAATGTCT+TGG - chr3_4:46074512-46074531 Msa0503120:three_prime_UTR 25.0%
!!! AAAAATGTCTTGGTGTTTTT+AGG - chr3_4:46074522-46074541 Msa0503120:three_prime_UTR 25.0%
!!! GATTTGCTATTTTCAATAGT+TGG - chr3_4:46074615-46074634 Msa0503120:three_prime_UTR 25.0%
!! GGTTTATATTTGTTTGCTTT+TGG - chr3_4:46074636-46074655 Msa0503120:three_prime_UTR 25.0%
!!! TTATATTTGTTTGCTTTTGG+AGG - chr3_4:46074639-46074658 Msa0503120:three_prime_UTR 25.0%
! ATGTAATAGCAATGAAATCA+TGG - chr3_4:46074705-46074724 Msa0503120:three_prime_UTR 25.0%
! TGTAATAGCAATGAAATCAT+GGG - chr3_4:46074706-46074725 Msa0503120:three_prime_UTR 25.0%
! TTACAAATTGAGTGTATGTT+TGG + chr3_4:46074841-46074860 None:intergenic 25.0%
!! TTTTTGGATGAAAAAAGTGA+TGG + chr3_4:46075131-46075150 None:intergenic 25.0%
!! TTTTTCATCCAAAAAATCGA+AGG - chr3_4:46075136-46075155 Msa0503120:intron 25.0%
! AGCTTACATTGTTAATGAAA+AGG - chr3_4:46075163-46075182 Msa0503120:intron 25.0%
! GAAGAATGAAAAAGCTAAAT+AGG + chr3_4:46075308-46075327 None:intergenic 25.0%
!! GAGTTAACTGATGATTTTTA+TGG - chr3_4:46075800-46075819 Msa0503120:intron 25.0%
!!! TGTTTCTTCGAATTTTTAGA+TGG - chr3_4:46075892-46075911 Msa0503120:intron 25.0%
! AGACTTACATTACATTGAAT+AGG + chr3_4:46076442-46076461 None:intergenic 25.0%
! ATAAATCCATGTGCATAATT+TGG + chr3_4:46076494-46076513 None:intergenic 25.0%
ATGTTTGAACTCAATTCAGT+TGG - chr3_4:46074487-46074506 Msa0503120:three_prime_UTR 30.0%
AATTGAGTGTATGTTTGGAT+TGG + chr3_4:46074836-46074855 None:intergenic 30.0%
! AGCTTTTACCTTCGATTTTT+TGG + chr3_4:46075147-46075166 None:intergenic 30.0%
TGTTAATGAAAAGGAACTGA+AGG - chr3_4:46075172-46075191 Msa0503120:intron 30.0%
TGTAAATGAAAAAGCCGAAA+GGG + chr3_4:46075284-46075303 None:intergenic 30.0%
!!! TTAGCTTTTTCATTCTTCTG+AGG - chr3_4:46075310-46075329 Msa0503120:intron 30.0%
!!! TAGCTTTTTCATTCTTCTGA+GGG - chr3_4:46075311-46075330 Msa0503120:intron 30.0%
AATAAGGTGCATATAGAGTA+AGG + chr3_4:46075347-46075366 None:intergenic 30.0%
TACTCTATATGCACCTTATT+TGG - chr3_4:46075347-46075366 Msa0503120:intron 30.0%
! TATATGCACCTTATTTGGTT+TGG - chr3_4:46075352-46075371 Msa0503120:intron 30.0%
TGATAAAGCCAAACCAAATA+AGG + chr3_4:46075363-46075382 None:intergenic 30.0%
AATGTTTCAGAAGAATGGAT+GGG + chr3_4:46075391-46075410 None:intergenic 30.0%
AATCCAATGTTTCAGAAGAA+TGG + chr3_4:46075396-46075415 None:intergenic 30.0%
!! TTCTTCTGAAACATTGGATT+TGG - chr3_4:46075396-46075415 Msa0503120:intron 30.0%
GGTAATAAAAAAGAGGGAAA+AGG - chr3_4:46075677-46075696 Msa0503120:intron 30.0%
! TTGATTCTGATTTTCTGCTT+TGG + chr3_4:46075920-46075939 None:intergenic 30.0%
AATCAAGCTTAGATCTTACT+TGG - chr3_4:46075934-46075953 Msa0503120:intron 30.0%
AACTACCAATGCAAAAACAA+TGG - chr3_4:46076003-46076022 Msa0503120:intron 30.0%
ACTACCAATGCAAAAACAAT+GGG - chr3_4:46076004-46076023 Msa0503120:intron 30.0%
! GCTCTAAATATATTTGCTTC+AGG - chr3_4:46076216-46076235 Msa0503120:intron 30.0%
AACTTCAACTTCCTAGTAAT+AGG - chr3_4:46076264-46076283 Msa0503120:intron 30.0%
AAAGAAATACATTCAGAGAG+TGG + chr3_4:46076323-46076342 None:intergenic 30.0%
TTCTCATTATGTTGTCATCT+AGG - chr3_4:46076372-46076391 Msa0503120:intron 30.0%
ATTCTTCCAAATTATGCACA+TGG - chr3_4:46076485-46076504 Msa0503120:five_prime_UTR 30.0%
ATGTTTGAACTCAATTCAGT+TGG - chr3_4:46074487-46074506 Msa0503120:three_prime_UTR 30.0%
AATTGAGTGTATGTTTGGAT+TGG + chr3_4:46074836-46074855 None:intergenic 30.0%
! AGCTTTTACCTTCGATTTTT+TGG + chr3_4:46075147-46075166 None:intergenic 30.0%
TGTTAATGAAAAGGAACTGA+AGG - chr3_4:46075172-46075191 Msa0503120:intron 30.0%
TGTAAATGAAAAAGCCGAAA+GGG + chr3_4:46075284-46075303 None:intergenic 30.0%
!!! TTAGCTTTTTCATTCTTCTG+AGG - chr3_4:46075310-46075329 Msa0503120:intron 30.0%
!!! TAGCTTTTTCATTCTTCTGA+GGG - chr3_4:46075311-46075330 Msa0503120:intron 30.0%
AATAAGGTGCATATAGAGTA+AGG + chr3_4:46075347-46075366 None:intergenic 30.0%
TACTCTATATGCACCTTATT+TGG - chr3_4:46075347-46075366 Msa0503120:intron 30.0%
! TATATGCACCTTATTTGGTT+TGG - chr3_4:46075352-46075371 Msa0503120:intron 30.0%
TGATAAAGCCAAACCAAATA+AGG + chr3_4:46075363-46075382 None:intergenic 30.0%
AATGTTTCAGAAGAATGGAT+GGG + chr3_4:46075391-46075410 None:intergenic 30.0%
AATCCAATGTTTCAGAAGAA+TGG + chr3_4:46075396-46075415 None:intergenic 30.0%
!! TTCTTCTGAAACATTGGATT+TGG - chr3_4:46075396-46075415 Msa0503120:intron 30.0%
GGTAATAAAAAAGAGGGAAA+AGG - chr3_4:46075677-46075696 Msa0503120:intron 30.0%
! TTGATTCTGATTTTCTGCTT+TGG + chr3_4:46075920-46075939 None:intergenic 30.0%
AATCAAGCTTAGATCTTACT+TGG - chr3_4:46075934-46075953 Msa0503120:intron 30.0%
AACTACCAATGCAAAAACAA+TGG - chr3_4:46076003-46076022 Msa0503120:intron 30.0%
ACTACCAATGCAAAAACAAT+GGG - chr3_4:46076004-46076023 Msa0503120:intron 30.0%
! GCTCTAAATATATTTGCTTC+AGG - chr3_4:46076216-46076235 Msa0503120:intron 30.0%
AACTTCAACTTCCTAGTAAT+AGG - chr3_4:46076264-46076283 Msa0503120:intron 30.0%
AAAGAAATACATTCAGAGAG+TGG + chr3_4:46076323-46076342 None:intergenic 30.0%
TTCTCATTATGTTGTCATCT+AGG - chr3_4:46076372-46076391 Msa0503120:intron 30.0%
ATTCTTCCAAATTATGCACA+TGG - chr3_4:46076485-46076504 Msa0503120:five_prime_UTR 30.0%
!!! GTGTTTTTAGGTTGATGACT+TGG - chr3_4:46074534-46074553 Msa0503120:three_prime_UTR 35.0%
! ATGCTAATTTTTGACGTGCT+TGG + chr3_4:46074565-46074584 None:intergenic 35.0%
AGCACGTCAAAAATTAGCAT+TGG - chr3_4:46074565-46074584 Msa0503120:three_prime_UTR 35.0%
GCACGTCAAAAATTAGCATT+GGG - chr3_4:46074566-46074585 Msa0503120:three_prime_UTR 35.0%
CACGTCAAAAATTAGCATTG+GGG - chr3_4:46074567-46074586 Msa0503120:three_prime_UTR 35.0%
!! TTTTGGAGGCTTCTTATATG+TGG - chr3_4:46074653-46074672 Msa0503120:three_prime_UTR 35.0%
! TTAGTGCATCTTTGGATTAG+CGG - chr3_4:46074734-46074753 Msa0503120:three_prime_UTR 35.0%
! ATGATTTGGCAAAATTGCAG+TGG + chr3_4:46074783-46074802 None:intergenic 35.0%
! ACTGCAATTTTGCCAAATCA+TGG - chr3_4:46074782-46074801 Msa0503120:exon 35.0%
! CTATGCCATACTTTTGACAA+GGG + chr3_4:46074917-46074936 None:intergenic 35.0%
! ACTATGCCATACTTTTGACA+AGG + chr3_4:46074918-46074937 None:intergenic 35.0%
TATGGCATAGTTTCAGAACA+AGG - chr3_4:46074927-46074946 Msa0503120:CDS 35.0%
GTTTCAGAACAAGGTTACAT+TGG - chr3_4:46074936-46074955 Msa0503120:CDS 35.0%
AAGGGTAAGTGAAAGACTTT+GGG + chr3_4:46075266-46075285 None:intergenic 35.0%
AAAGGGTAAGTGAAAGACTT+TGG + chr3_4:46075267-46075286 None:intergenic 35.0%
AAGTCTTTCACTTACCCTTT+CGG - chr3_4:46075267-46075286 Msa0503120:intron 35.0%
GTGTAAATGAAAAAGCCGAA+AGG + chr3_4:46075285-46075304 None:intergenic 35.0%
CAATGTTTCAGAAGAATGGA+TGG + chr3_4:46075392-46075411 None:intergenic 35.0%
!! CATCCATTCTTCTGAAACAT+TGG - chr3_4:46075390-46075409 Msa0503120:intron 35.0%
ACCATTGGATAGAAATCAGA+CGG + chr3_4:46075549-46075568 None:intergenic 35.0%
TCCTGAGGGTAATAAAAAAG+AGG - chr3_4:46075670-46075689 Msa0503120:intron 35.0%
CCTGAGGGTAATAAAAAAGA+GGG - chr3_4:46075671-46075690 Msa0503120:intron 35.0%
TAGTCATCATCCAATTTCCA+TGG - chr3_4:46075753-46075772 Msa0503120:intron 35.0%
TGTGACCTATAACTTATCTG+TGG - chr3_4:46075838-46075857 Msa0503120:intron 35.0%
AGAGTCCACAGATAAGTTAT+AGG + chr3_4:46075846-46075865 None:intergenic 35.0%
GAATCTATTGTTTGTGCTGT+AGG + chr3_4:46076151-46076170 None:intergenic 35.0%
TCGACTCATTTCCTATTACT+AGG + chr3_4:46076278-46076297 None:intergenic 35.0%
ATAGGAAATGAGTCGATACT+CGG - chr3_4:46076282-46076301 Msa0503120:intron 35.0%
GCAAATATCTATGTGACAAC+AGG + chr3_4:46076415-46076434 None:intergenic 35.0%
!!! GTGTTTTTAGGTTGATGACT+TGG - chr3_4:46074534-46074553 Msa0503120:three_prime_UTR 35.0%
! ATGCTAATTTTTGACGTGCT+TGG + chr3_4:46074565-46074584 None:intergenic 35.0%
AGCACGTCAAAAATTAGCAT+TGG - chr3_4:46074565-46074584 Msa0503120:three_prime_UTR 35.0%
GCACGTCAAAAATTAGCATT+GGG - chr3_4:46074566-46074585 Msa0503120:three_prime_UTR 35.0%
CACGTCAAAAATTAGCATTG+GGG - chr3_4:46074567-46074586 Msa0503120:three_prime_UTR 35.0%
!! TTTTGGAGGCTTCTTATATG+TGG - chr3_4:46074653-46074672 Msa0503120:three_prime_UTR 35.0%
! TTAGTGCATCTTTGGATTAG+CGG - chr3_4:46074734-46074753 Msa0503120:three_prime_UTR 35.0%
! ATGATTTGGCAAAATTGCAG+TGG + chr3_4:46074783-46074802 None:intergenic 35.0%
! ACTGCAATTTTGCCAAATCA+TGG - chr3_4:46074782-46074801 Msa0503120:exon 35.0%
! CTATGCCATACTTTTGACAA+GGG + chr3_4:46074917-46074936 None:intergenic 35.0%
! ACTATGCCATACTTTTGACA+AGG + chr3_4:46074918-46074937 None:intergenic 35.0%
TATGGCATAGTTTCAGAACA+AGG - chr3_4:46074927-46074946 Msa0503120:CDS 35.0%
GTTTCAGAACAAGGTTACAT+TGG - chr3_4:46074936-46074955 Msa0503120:CDS 35.0%
AAGGGTAAGTGAAAGACTTT+GGG + chr3_4:46075266-46075285 None:intergenic 35.0%
AAAGGGTAAGTGAAAGACTT+TGG + chr3_4:46075267-46075286 None:intergenic 35.0%
AAGTCTTTCACTTACCCTTT+CGG - chr3_4:46075267-46075286 Msa0503120:intron 35.0%
GTGTAAATGAAAAAGCCGAA+AGG + chr3_4:46075285-46075304 None:intergenic 35.0%
CAATGTTTCAGAAGAATGGA+TGG + chr3_4:46075392-46075411 None:intergenic 35.0%
!! CATCCATTCTTCTGAAACAT+TGG - chr3_4:46075390-46075409 Msa0503120:intron 35.0%
ACCATTGGATAGAAATCAGA+CGG + chr3_4:46075549-46075568 None:intergenic 35.0%
TCCTGAGGGTAATAAAAAAG+AGG - chr3_4:46075670-46075689 Msa0503120:intron 35.0%
CCTGAGGGTAATAAAAAAGA+GGG - chr3_4:46075671-46075690 Msa0503120:intron 35.0%
TAGTCATCATCCAATTTCCA+TGG - chr3_4:46075753-46075772 Msa0503120:intron 35.0%
TGTGACCTATAACTTATCTG+TGG - chr3_4:46075838-46075857 Msa0503120:intron 35.0%
AGAGTCCACAGATAAGTTAT+AGG + chr3_4:46075846-46075865 None:intergenic 35.0%
GAATCTATTGTTTGTGCTGT+AGG + chr3_4:46076151-46076170 None:intergenic 35.0%
TCGACTCATTTCCTATTACT+AGG + chr3_4:46076278-46076297 None:intergenic 35.0%
ATAGGAAATGAGTCGATACT+CGG - chr3_4:46076282-46076301 Msa0503120:intron 35.0%
GCAAATATCTATGTGACAAC+AGG + chr3_4:46076415-46076434 None:intergenic 35.0%
!! GGGACATTTTAGTGCATCTT+TGG - chr3_4:46074726-46074745 Msa0503120:three_prime_UTR 40.0%
TGAGTTAGGCAAAATCACAC+TGG + chr3_4:46074810-46074829 None:intergenic 40.0%
! TGAGTGTATGTTTGGATTGG+CGG + chr3_4:46074833-46074852 None:intergenic 40.0%
ATGTTTCACTGCTGAGTAAC+TGG + chr3_4:46074889-46074908 None:intergenic 40.0%
ATGCTCCCTTGTCAAAAGTA+TGG - chr3_4:46074909-46074928 Msa0503120:CDS 40.0%
ACCGTCTGATTTCTATCCAA+TGG - chr3_4:46075545-46075564 Msa0503120:intron 40.0%
AATCCAAATCCCTGAAACAC+AGG - chr3_4:46075623-46075642 Msa0503120:intron 40.0%
!!! CCCTCTTTTTTATTACCCTC+AGG + chr3_4:46075674-46075693 None:intergenic 40.0%
!! CCTCACTTTTCCATGGAAAT+TGG + chr3_4:46075766-46075785 None:intergenic 40.0%
CCAATTTCCATGGAAAAGTG+AGG - chr3_4:46075763-46075782 Msa0503120:intron 40.0%
!! TTCTACTCCTCACTTTTCCA+TGG + chr3_4:46075773-46075792 None:intergenic 40.0%
TTGCAGGAATCCTCTATCAA+GGG + chr3_4:46075962-46075981 None:intergenic 40.0%
!!! AGGACCCATTGTTTTTGCAT+TGG + chr3_4:46076011-46076030 None:intergenic 40.0%
!! TTCTTGGTTGGTAAAGGAAC+AGG + chr3_4:46076031-46076050 None:intergenic 40.0%
!! ATTCGCTTCTTGGTTGGTAA+AGG + chr3_4:46076037-46076056 None:intergenic 40.0%
TGTGTACGTGTGGAGATTTA+AGG + chr3_4:46076069-46076088 None:intergenic 40.0%
TAAATCTCCACACGTACACA+AGG - chr3_4:46076069-46076088 Msa0503120:intron 40.0%
! GATGAGTTCTGATCTCGAAA+TGG + chr3_4:46076105-46076124 None:intergenic 40.0%
!! GGGACATTTTAGTGCATCTT+TGG - chr3_4:46074726-46074745 Msa0503120:three_prime_UTR 40.0%
TGAGTTAGGCAAAATCACAC+TGG + chr3_4:46074810-46074829 None:intergenic 40.0%
! TGAGTGTATGTTTGGATTGG+CGG + chr3_4:46074833-46074852 None:intergenic 40.0%
ATGTTTCACTGCTGAGTAAC+TGG + chr3_4:46074889-46074908 None:intergenic 40.0%
ATGCTCCCTTGTCAAAAGTA+TGG - chr3_4:46074909-46074928 Msa0503120:CDS 40.0%
ACCGTCTGATTTCTATCCAA+TGG - chr3_4:46075545-46075564 Msa0503120:intron 40.0%
AATCCAAATCCCTGAAACAC+AGG - chr3_4:46075623-46075642 Msa0503120:intron 40.0%
!!! CCCTCTTTTTTATTACCCTC+AGG + chr3_4:46075674-46075693 None:intergenic 40.0%
!! CCTCACTTTTCCATGGAAAT+TGG + chr3_4:46075766-46075785 None:intergenic 40.0%
CCAATTTCCATGGAAAAGTG+AGG - chr3_4:46075763-46075782 Msa0503120:intron 40.0%
!! TTCTACTCCTCACTTTTCCA+TGG + chr3_4:46075773-46075792 None:intergenic 40.0%
TTGCAGGAATCCTCTATCAA+GGG + chr3_4:46075962-46075981 None:intergenic 40.0%
!!! AGGACCCATTGTTTTTGCAT+TGG + chr3_4:46076011-46076030 None:intergenic 40.0%
!! TTCTTGGTTGGTAAAGGAAC+AGG + chr3_4:46076031-46076050 None:intergenic 40.0%
!! ATTCGCTTCTTGGTTGGTAA+AGG + chr3_4:46076037-46076056 None:intergenic 40.0%
TGTGTACGTGTGGAGATTTA+AGG + chr3_4:46076069-46076088 None:intergenic 40.0%
TAAATCTCCACACGTACACA+AGG - chr3_4:46076069-46076088 Msa0503120:intron 40.0%
! GATGAGTTCTGATCTCGAAA+TGG + chr3_4:46076105-46076124 None:intergenic 40.0%
CATTGGGGATAATGCAGACA+TGG - chr3_4:46074582-46074601 Msa0503120:three_prime_UTR 45.0%
ATCACACTGGCACCATGATT+TGG + chr3_4:46074797-46074816 None:intergenic 45.0%
! AGTGTTGGATCGAGACTAGA+CGG - chr3_4:46075463-46075482 Msa0503120:intron 45.0%
TCATGGACGTAGGTAACCAT+TGG + chr3_4:46075564-46075583 None:intergenic 45.0%
CCACATAGTGTGATTGCACA+AGG + chr3_4:46075649-46075668 None:intergenic 45.0%
CCTTGTGCAATCACACTATG+TGG - chr3_4:46075646-46075665 Msa0503120:intron 45.0%
ATCACACTATGTGGTTCCTG+AGG - chr3_4:46075655-46075674 Msa0503120:intron 45.0%
TCACACTATGTGGTTCCTGA+GGG - chr3_4:46075656-46075675 Msa0503120:intron 45.0%
TTACTTGGTCCCCTTGATAG+AGG - chr3_4:46075949-46075968 Msa0503120:intron 45.0%
TGCAGGAATCCTCTATCAAG+GGG + chr3_4:46075961-46075980 None:intergenic 45.0%
CTTGCAGGAATCCTCTATCA+AGG + chr3_4:46075963-46075982 None:intergenic 45.0%
CAGTGAATTCGCTTCTTGGT+TGG + chr3_4:46076043-46076062 None:intergenic 45.0%
GACACAGTGAATTCGCTTCT+TGG + chr3_4:46076047-46076066 None:intergenic 45.0%
CATTGGGGATAATGCAGACA+TGG - chr3_4:46074582-46074601 Msa0503120:three_prime_UTR 45.0%
ATCACACTGGCACCATGATT+TGG + chr3_4:46074797-46074816 None:intergenic 45.0%
! AGTGTTGGATCGAGACTAGA+CGG - chr3_4:46075463-46075482 Msa0503120:intron 45.0%
TCATGGACGTAGGTAACCAT+TGG + chr3_4:46075564-46075583 None:intergenic 45.0%
CCACATAGTGTGATTGCACA+AGG + chr3_4:46075649-46075668 None:intergenic 45.0%
CCTTGTGCAATCACACTATG+TGG - chr3_4:46075646-46075665 Msa0503120:intron 45.0%
ATCACACTATGTGGTTCCTG+AGG - chr3_4:46075655-46075674 Msa0503120:intron 45.0%
TCACACTATGTGGTTCCTGA+GGG - chr3_4:46075656-46075675 Msa0503120:intron 45.0%
TTACTTGGTCCCCTTGATAG+AGG - chr3_4:46075949-46075968 Msa0503120:intron 45.0%
TGCAGGAATCCTCTATCAAG+GGG + chr3_4:46075961-46075980 None:intergenic 45.0%
CTTGCAGGAATCCTCTATCA+AGG + chr3_4:46075963-46075982 None:intergenic 45.0%
CAGTGAATTCGCTTCTTGGT+TGG + chr3_4:46076043-46076062 None:intergenic 45.0%
GACACAGTGAATTCGCTTCT+TGG + chr3_4:46076047-46076066 None:intergenic 45.0%
!! GTTTGGATTGGCGGTGAGTT+AGG + chr3_4:46074824-46074843 None:intergenic 50.0%
TTCCACACATTCACGCAGTC+TGG - chr3_4:46075430-46075449 Msa0503120:intron 50.0%
TCCACACATTCACGCAGTCT+GGG - chr3_4:46075431-46075450 Msa0503120:intron 50.0%
! ATTCACGCAGTCTGGGATGT+CGG - chr3_4:46075438-46075457 Msa0503120:intron 50.0%
AGTCATGGTCTCATGGACGT+AGG + chr3_4:46075574-46075593 None:intergenic 50.0%
TTCACGCAGTCATGGTCTCA+TGG + chr3_4:46075581-46075600 None:intergenic 50.0%
AGGCCTGTGTTTCAGGGATT+TGG + chr3_4:46075629-46075648 None:intergenic 50.0%
TGCACAAGGCCTGTGTTTCA+GGG + chr3_4:46075635-46075654 None:intergenic 50.0%
TTGCACAAGGCCTGTGTTTC+AGG + chr3_4:46075636-46075655 None:intergenic 50.0%
GGATTCCTGCAAGCAGATAC+TGG - chr3_4:46075970-46075989 Msa0503120:intron 50.0%
TGCATCCAGTATCTGCTTGC+AGG + chr3_4:46075978-46075997 None:intergenic 50.0%
CACACGTACACAAGGATGCT+CGG - chr3_4:46076077-46076096 Msa0503120:intron 50.0%
ATGCAGCTTGATCTTCCTGC+TGG - chr3_4:46076175-46076194 Msa0503120:intron 50.0%
!! GTTTGGATTGGCGGTGAGTT+AGG + chr3_4:46074824-46074843 None:intergenic 50.0%
TTCCACACATTCACGCAGTC+TGG - chr3_4:46075430-46075449 Msa0503120:intron 50.0%
TCCACACATTCACGCAGTCT+GGG - chr3_4:46075431-46075450 Msa0503120:intron 50.0%
! ATTCACGCAGTCTGGGATGT+CGG - chr3_4:46075438-46075457 Msa0503120:intron 50.0%
AGTCATGGTCTCATGGACGT+AGG + chr3_4:46075574-46075593 None:intergenic 50.0%
TTCACGCAGTCATGGTCTCA+TGG + chr3_4:46075581-46075600 None:intergenic 50.0%
AGGCCTGTGTTTCAGGGATT+TGG + chr3_4:46075629-46075648 None:intergenic 50.0%
TGCACAAGGCCTGTGTTTCA+GGG + chr3_4:46075635-46075654 None:intergenic 50.0%
TTGCACAAGGCCTGTGTTTC+AGG + chr3_4:46075636-46075655 None:intergenic 50.0%
GGATTCCTGCAAGCAGATAC+TGG - chr3_4:46075970-46075989 Msa0503120:intron 50.0%
TGCATCCAGTATCTGCTTGC+AGG + chr3_4:46075978-46075997 None:intergenic 50.0%
CACACGTACACAAGGATGCT+CGG - chr3_4:46076077-46076096 Msa0503120:intron 50.0%
ATGCAGCTTGATCTTCCTGC+TGG - chr3_4:46076175-46076194 Msa0503120:intron 50.0%
TCCCAGACTGCGTGAATGTG+TGG + chr3_4:46075435-46075454 None:intergenic 55.0%
! TCTGGGATGTCGGTGAGTGT+TGG - chr3_4:46075448-46075467 Msa0503120:intron 55.0%
GGTGCACATTCACGCAGTCA+TGG + chr3_4:46075589-46075608 None:intergenic 55.0%
ACTGCGTGAATGTGCACCTG+CGG - chr3_4:46075591-46075610 Msa0503120:intron 55.0%
TTGGATTTGACGCTGTCCGC+AGG + chr3_4:46075610-46075629 None:intergenic 55.0%
CGAGCATCCTTGTGTACGTG+TGG + chr3_4:46076079-46076098 None:intergenic 55.0%
ACTTCGACATCAACGCCAGC+AGG + chr3_4:46076193-46076212 None:intergenic 55.0%
TCCCAGACTGCGTGAATGTG+TGG + chr3_4:46075435-46075454 None:intergenic 55.0%
! TCTGGGATGTCGGTGAGTGT+TGG - chr3_4:46075448-46075467 Msa0503120:intron 55.0%
GGTGCACATTCACGCAGTCA+TGG + chr3_4:46075589-46075608 None:intergenic 55.0%
ACTGCGTGAATGTGCACCTG+CGG - chr3_4:46075591-46075610 Msa0503120:intron 55.0%
TTGGATTTGACGCTGTCCGC+AGG + chr3_4:46075610-46075629 None:intergenic 55.0%
CGAGCATCCTTGTGTACGTG+TGG + chr3_4:46076079-46076098 None:intergenic 55.0%
ACTTCGACATCAACGCCAGC+AGG + chr3_4:46076193-46076212 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 46074459 46076549 46074459 ID=Msa0503120;Name=Msa0503120
chr3_4 mRNA 46074459 46076549 46074459 ID=Msa0503120-mRNA-1;Parent=Msa0503120;Name=Msa0503120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=142|1|1|1|1|1|2|327|104
chr3_4 exon 46074459 46075097 46074459 ID=Msa0503120-mRNA-1:exon:9835;Parent=Msa0503120-mRNA-1
chr3_4 exon 46076405 46076549 46076405 ID=Msa0503120-mRNA-1:exon:9834;Parent=Msa0503120-mRNA-1
chr3_4 five_prime_UTR 46076408 46076549 46076408 ID=Msa0503120-mRNA-1:five_prime_utr;Parent=Msa0503120-mRNA-1
chr3_4 CDS 46076405 46076407 46076405 ID=Msa0503120-mRNA-1:cds;Parent=Msa0503120-mRNA-1
chr3_4 CDS 46074786 46075097 46074786 ID=Msa0503120-mRNA-1:cds;Parent=Msa0503120-mRNA-1
chr3_4 three_prime_UTR 46074459 46074785 46074459 ID=Msa0503120-mRNA-1:three_prime_utr;Parent=Msa0503120-mRNA-1
Gene Sequence

>Msa0503120

ATGATGGCACCAAAGCAGAAAATCAGAATCAAGCTTAGATCTTACTTGGTCCCCTTGATAGAGGATTCCTGCAAGCAGATACTGGATGCAGCAAGAACTACCAATGCAAAAACAATGGGTCCTGTTCCTTTACCAACCAAGAAGCGAATTCACTGTGTCCTTAAATCTCCACACGTACACAAGGATGCTCGGTTCCATTTCGAGATCAGAACTCATCAGCGTGTCATTGATATTCTGTTTCCTACAGCACAAACAATAGATTCTCTTATGCAGCTTGATCTTCCTGCTGGCGTTGATGTCGAAGTCAAGCTCTAA

Protein sequence

>Msa0503120

MMAPKQKIRIKLRSYLVPLIEDSCKQILDAARTTNAKTMGPVPLPTKKRIHCVLKSPHVHKDARFHFEIRTHQRVIDILFPTAQTIDSLMQLDLPAGVDVEVKL*