AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1106580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1106580 MtrunA17_Chr7g0239041 91.736 121 5 1 1 116 62 182 8.12e-63 191
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1106580 AT5G02160.1 85.507 69 10 0 48 116 50 118 3.62e-39 129

Find 30 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACACTAAACTCTTATT+TGG 0.131404 7_3:-46643064 Msa1106580:CDS
GCACCAAAATATTCTCTTCT+AGG 0.231461 7_3:-46641000 Msa1106580:CDS
CTTCCTAGAAGAGAATATTT+TGG 0.256212 7_3:+46640997 None:intergenic
CTCACTTTCTTCAATTTGTT+TGG 0.288692 7_3:-46643161 Msa1106580:five_prime_UTR
TATCTTGTTGCTGGTGCTAT+TGG 0.295597 7_3:-46642944 Msa1106580:CDS
GGCACTATTTATCTTGTTGC+TGG 0.299445 7_3:-46642953 Msa1106580:CDS
AATCCTGCTCCATCACATTC+AGG 0.320237 7_3:+46641596 None:intergenic
AAATAAGAGTTTAGTGTTGT+TGG 0.324277 7_3:+46643066 None:intergenic
GCTATTGGAATTGCTCTTGT+TGG 0.368974 7_3:-46642929 Msa1106580:CDS
ATTGGGAATGATTGTGTTCA+AGG 0.420585 7_3:+46643099 None:intergenic
TCAGTTGTTGTTTCAGCAGT+TGG 0.426749 7_3:-46642992 Msa1106580:CDS
GTGATGGAGCAGGATTTGTT+AGG 0.439652 7_3:-46641589 Msa1106580:CDS
TTGTTATGTTATTGTTGGAT+TGG 0.444344 7_3:+46643221 None:intergenic
AACACTAAACTCTTATTTGG+AGG 0.444395 7_3:-46643061 Msa1106580:CDS
TCTTTACGTGAGAAGATGAT+AGG 0.453999 7_3:+46642896 None:intergenic
GAGAGCAAATGCAGCAAGAA+AGG 0.478276 7_3:-46641549 Msa1106580:CDS
GTTGTTGGAAATTGTAACAT+TGG 0.483393 7_3:+46643081 None:intergenic
CAGGATTTGTTAGGAAAGGT+GGG 0.493196 7_3:-46641580 Msa1106580:CDS
GCAGGATTTGTTAGGAAAGG+TGG 0.494612 7_3:-46641581 Msa1106580:CDS
ATCCTGCTCCATCACATTCA+GGG 0.520813 7_3:+46641597 None:intergenic
TTGTTGGAAATTGTAACATT+GGG 0.522805 7_3:+46643082 None:intergenic
ATTGTTTGTGCTCGTTGTGA+TGG 0.530028 7_3:-46641515 Msa1106580:intron
AATGATTGTGTTCAAGGTCA+TGG 0.560862 7_3:+46643105 None:intergenic
GGAGCAGGATTTGTTAGGAA+AGG 0.574999 7_3:-46641584 Msa1106580:CDS
TGCCCTGAATGTGATGGAGC+AGG 0.576452 7_3:-46641599 Msa1106580:CDS
GTTGGAGATGTATCTTCTGA+TGG 0.593310 7_3:-46642974 Msa1106580:CDS
ATTACATTGTATTAGAAACA+TGG 0.624195 7_3:-46643131 Msa1106580:exon
AGGATTTGTTAGGAAAGGTG+GGG 0.649454 7_3:-46641579 Msa1106580:CDS
ATCAGATGCCCTGAATGTGA+TGG 0.654871 7_3:-46641605 Msa1106580:intron
GATTTGTTATGATATCAGAG+AGG 0.684818 7_3:-46640975 Msa1106580:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATAAATATTTATATT+GGG + chr7_3:46639990-46640009 None:intergenic 0.0%
!! AAAATTATAAATATTTATAT+TGG + chr7_3:46639991-46640010 None:intergenic 0.0%
!!! AATTTTTTTAAAAATATAAT+TGG - chr7_3:46642242-46642261 Msa1106580:intron 0.0%
!! TAAAAAATAAAATCTGATTT+CGG - chr7_3:46639813-46639832 Msa1106580:intron 10.0%
!! AAAAATAGGTTTATAATTAT+TGG + chr7_3:46640417-46640436 None:intergenic 10.0%
!!! TTTATATTTTAAGATAAAAG+AGG + chr7_3:46641550-46641569 None:intergenic 10.0%
!!! TTATAAGAATAATATTTTGT+TGG + chr7_3:46642219-46642238 None:intergenic 10.0%
!!! TATTATATTTGTTATATTGT+TGG + chr7_3:46642423-46642442 None:intergenic 10.0%
!!! TTATATTCAAATTTGTTTAA+GGG - chr7_3:46642540-46642559 Msa1106580:intron 10.0%
!!! TTTTTTTGTTATGTTATTGT+TGG + chr7_3:46639013-46639032 None:intergenic 15.0%
!! AATAATAATCTCAATAATAG+TGG - chr7_3:46640015-46640034 Msa1106580:intron 15.0%
!!! TAATTATAAACCTATTTTTG+TGG - chr7_3:46640418-46640437 Msa1106580:intron 15.0%
!!! CCATATATATTTTTTTTTTC+CGG - chr7_3:46641103-46641122 Msa1106580:intron 15.0%
!!! TATTATGTTTTGTATGAAAA+AGG + chr7_3:46641580-46641599 None:intergenic 15.0%
!!! CTTATATTCAAATTTGTTTA+AGG - chr7_3:46642539-46642558 Msa1106580:intron 15.0%
!! AAAAAGACAAAAATAAACAT+CGG + chr7_3:46643182-46643201 None:intergenic 15.0%
!!! AAATTAGTTTTTTTTTTCAG+AGG - chr7_3:46643244-46643263 Msa1106580:five_prime_UTR 15.0%
!! ATTACATTGTATTAGAAACA+TGG - chr7_3:46639095-46639114 Msa1106580:intron 20.0%
!!! TTCTAAGAGAAATTTTGTAT+AGG - chr7_3:46639535-46639554 Msa1106580:intron 20.0%
!!! AAATTTTGTATAGGCATTTT+TGG - chr7_3:46639544-46639563 Msa1106580:intron 20.0%
!! AATCTTAAAACCACAAAAAT+AGG + chr7_3:46640431-46640450 None:intergenic 20.0%
!!! TTTTTTCATTGATTCTTGTT+TGG - chr7_3:46640520-46640539 Msa1106580:intron 20.0%
!!! ATAGAAATGCTTTTTTCTTT+TGG - chr7_3:46640761-46640780 Msa1106580:intron 20.0%
!!! TAGATTTTAAAATCCGAATA+GGG + chr7_3:46640822-46640841 None:intergenic 20.0%
!!! TTAGATTTTAAAATCCGAAT+AGG + chr7_3:46640823-46640842 None:intergenic 20.0%
!! CCGGAAAAAAAAAATATATA+TGG + chr7_3:46641106-46641125 None:intergenic 20.0%
!! CTACTTTATATACAAAAAGA+AGG + chr7_3:46641381-46641400 None:intergenic 20.0%
!!! CTTTTTGTATATAAAGTAGA+AGG - chr7_3:46641382-46641401 Msa1106580:intron 20.0%
!! GTGTAATTTAAAAAATTCTC+AGG + chr7_3:46641521-46641540 None:intergenic 20.0%
!!! ATATTTTAAGATAAAAGAGG+AGG + chr7_3:46641547-46641566 None:intergenic 20.0%
!!! GTTGTTAGATAACTTTTATT+AGG + chr7_3:46641871-46641890 None:intergenic 20.0%
!!! TTTGGAACTTGATTAATTAA+TGG + chr7_3:46642079-46642098 None:intergenic 20.0%
!!! AATTTGTTTAAGGGTATAAT+TGG - chr7_3:46642549-46642568 Msa1106580:intron 20.0%
! TTGTTATGTTATTGTTGGAT+TGG + chr7_3:46639008-46639027 None:intergenic 25.0%
! TTGTTGGAAATTGTAACATT+GGG + chr7_3:46639147-46639166 None:intergenic 25.0%
! AAATAAGAGTTTAGTGTTGT+TGG + chr7_3:46639163-46639182 None:intergenic 25.0%
! AACAACACTAAACTCTTATT+TGG - chr7_3:46639162-46639181 Msa1106580:intron 25.0%
!!! CATCGTTATTTTCATTTTCA+TGG - chr7_3:46639367-46639386 Msa1106580:intron 25.0%
!! ATTCTGAGAAAATTAGAGAT+AGG + chr7_3:46639631-46639650 None:intergenic 25.0%
! GGTAAAACTATACTTATCTA+TGG + chr7_3:46639747-46639766 None:intergenic 25.0%
!!! TAAGTATAGTTTTACCTTGA+CGG - chr7_3:46639751-46639770 Msa1106580:intron 25.0%
! GATAATGCATAATATGTGTA+AGG - chr7_3:46639908-46639927 Msa1106580:intron 25.0%
!!! TCCTAGTTTTTTAATCTACT+TGG - chr7_3:46640459-46640478 Msa1106580:intron 25.0%
!!! CCTAGTTTTTTAATCTACTT+GGG - chr7_3:46640460-46640479 Msa1106580:intron 25.0%
! TGCACTTGAAATAAAAATCT+AGG + chr7_3:46640496-46640515 None:intergenic 25.0%
!! TGTTAATGATGTGTTATTGT+TGG - chr7_3:46640590-46640609 Msa1106580:intron 25.0%
! ACATTACATTACACATGAAA+GGG + chr7_3:46640916-46640935 None:intergenic 25.0%
! TACATTACATTACACATGAA+AGG + chr7_3:46640917-46640936 None:intergenic 25.0%
! TTCATAATGTAAGGAGATAA+GGG - chr7_3:46640988-46641007 Msa1106580:CDS 25.0%
!! TATGTTTTGTATGAAAAAGG+AGG + chr7_3:46641577-46641596 None:intergenic 25.0%
! ATGAGAGATGTTTAATAAGA+GGG + chr7_3:46641622-46641641 None:intergenic 25.0%
! AAGAGTTCATCATTATTCTA+TGG + chr7_3:46641650-46641669 None:intergenic 25.0%
!!! TAATGATGAACTCTTTTTTG+TGG - chr7_3:46641655-46641674 Msa1106580:intron 25.0%
!!! AACTCTTTTTTGTGGAAAAA+TGG - chr7_3:46641663-46641682 Msa1106580:intron 25.0%
!!! TCTCTCAATTTTTTAAAGCT+AGG - chr7_3:46641839-46641858 Msa1106580:intron 25.0%
! ACCAAGGTTCATAAAAAATT+GGG + chr7_3:46641909-46641928 None:intergenic 25.0%
! AACCAAGGTTCATAAAAAAT+TGG + chr7_3:46641910-46641929 None:intergenic 25.0%
! TGAGAATAACATATGCTAAA+AGG + chr7_3:46642051-46642070 None:intergenic 25.0%
! GTATATATAAAGCGAATACA+TGG + chr7_3:46642289-46642308 None:intergenic 25.0%
! ATACAATCATCTCTTAAGTT+TGG - chr7_3:46642897-46642916 Msa1106580:CDS 25.0%
! ATTCTCTCCTATTATATCAA+TGG - chr7_3:46643013-46643032 Msa1106580:CDS 25.0%
! ATACAAGCCATTGATATAAT+AGG + chr7_3:46643023-46643042 None:intergenic 25.0%
! ATATACACCGATATAATTAG+GGG + chr7_3:46643084-46643103 None:intergenic 25.0%
! CATATACACCGATATAATTA+GGG + chr7_3:46643085-46643104 None:intergenic 25.0%
! TCATATACACCGATATAATT+AGG + chr7_3:46643086-46643105 None:intergenic 25.0%
! CTCACTTTCTTCAATTTGTT+TGG - chr7_3:46639065-46639084 Msa1106580:intron 30.0%
GTTGTTGGAAATTGTAACAT+TGG + chr7_3:46639148-46639167 None:intergenic 30.0%
! AACACTAAACTCTTATTTGG+AGG - chr7_3:46639165-46639184 Msa1106580:intron 30.0%
TGAACAAATTACACTTGCAA+TGG - chr7_3:46639477-46639496 Msa1106580:intron 30.0%
TCAATAAAAAACATCCGTCA+AGG + chr7_3:46639768-46639787 None:intergenic 30.0%
TCAATAATAGTGGTTGAAAC+TGG - chr7_3:46640025-46640044 Msa1106580:intron 30.0%
TGATAATTGGCAATGATGAT+TGG - chr7_3:46640118-46640137 Msa1106580:intron 30.0%
!!! GTGGTCATAGTAGTTTTAAA+TGG - chr7_3:46640210-46640229 Msa1106580:intron 30.0%
CCCAAGTAGATTAAAAAACT+AGG + chr7_3:46640463-46640482 None:intergenic 30.0%
!! TCATTGATTCTTGTTTGGAA+TGG - chr7_3:46640525-46640544 Msa1106580:intron 30.0%
CACATCATTAACAAACAACA+AGG + chr7_3:46640583-46640602 None:intergenic 30.0%
AGCATTTCTATTTGTCAACT+TGG + chr7_3:46640752-46640771 None:intergenic 30.0%
GTGATGAACTTCATAATGTA+AGG - chr7_3:46640979-46640998 Msa1106580:CDS 30.0%
CTTCATAATGTAAGGAGATA+AGG - chr7_3:46640987-46641006 Msa1106580:CDS 30.0%
TGAACATACTTTGCTTAAAC+CGG + chr7_3:46641125-46641144 None:intergenic 30.0%
! CTTCCTAGAAGAGAATATTT+TGG + chr7_3:46641232-46641251 None:intergenic 30.0%
!! GATTTGTTATGATATCAGAG+AGG - chr7_3:46641251-46641270 Msa1106580:intron 30.0%
TTTCACTTGTCTACTTCAAA+CGG - chr7_3:46641303-46641322 Msa1106580:intron 30.0%
TAGAAGGTGATTTGATACAA+GGG - chr7_3:46641398-46641417 Msa1106580:intron 30.0%
AACATAGAAGAACATTCTTG+AGG + chr7_3:46641452-46641471 None:intergenic 30.0%
GATGAGAGATGTTTAATAAG+AGG + chr7_3:46641623-46641642 None:intergenic 30.0%
!!! TCTTTTTTGTGGAAAAATGG+TGG - chr7_3:46641666-46641685 Msa1106580:intron 30.0%
AAGACAACCAATTTATACCA+CGG + chr7_3:46641701-46641720 None:intergenic 30.0%
AGTTGTCGACGTAAAAATAA+TGG - chr7_3:46641727-46641746 Msa1106580:intron 30.0%
AGTTATCTAACAACCAACTT+AGG - chr7_3:46641877-46641896 Msa1106580:intron 30.0%
!!! ACCCAATTTTTTATGAACCT+TGG - chr7_3:46641905-46641924 Msa1106580:intron 30.0%
!! AGCATTGATGGTAACATAAT+AGG - chr7_3:46641943-46641962 Msa1106580:intron 30.0%
CAAATGATTGTAGTTCTCAA+GGG - chr7_3:46642095-46642114 Msa1106580:intron 30.0%
! TAAAGCGAATACATGGTTTT+GGG + chr7_3:46642282-46642301 None:intergenic 30.0%
! ATAAAGCGAATACATGGTTT+TGG + chr7_3:46642283-46642302 None:intergenic 30.0%
ACATTAGTGCAATAAGAAGA+CGG + chr7_3:46642337-46642356 None:intergenic 30.0%
! TGTTTAAGGGTATAATTGGA+AGG - chr7_3:46642553-46642572 Msa1106580:intron 30.0%
!!! TAACGCTATTTTTGTTGCAA+AGG - chr7_3:46642860-46642879 Msa1106580:intron 30.0%
!! TATTTTTGTTGCAAAGGAGA+AGG - chr7_3:46642866-46642885 Msa1106580:intron 30.0%
AAAAATGAGTTTAACGGTAC+TGG + chr7_3:46642960-46642979 None:intergenic 30.0%
!! ACCGTTAAACTCATTTTTCT+CGG - chr7_3:46642962-46642981 Msa1106580:CDS 30.0%
ACCGAGAAAAATGAGTTTAA+CGG + chr7_3:46642966-46642985 None:intergenic 30.0%
TATACACCGATATAATTAGG+GGG + chr7_3:46643083-46643102 None:intergenic 30.0%
!! AAAAAAAGTACTCATGCAAG+AGG - chr7_3:46643152-46643171 Msa1106580:five_prime_UTR 30.0%
AATGATTGTGTTCAAGGTCA+TGG + chr7_3:46639124-46639143 None:intergenic 35.0%
ATTGGGAATGATTGTGTTCA+AGG + chr7_3:46639130-46639149 None:intergenic 35.0%
TCTTTACGTGAGAAGATGAT+AGG + chr7_3:46639333-46639352 None:intergenic 35.0%
TTGAACTTTGCTCAGTTGAT+AGG - chr7_3:46639885-46639904 Msa1106580:intron 35.0%
! TGAACTTTGCTCAGTTGATA+GGG - chr7_3:46639886-46639905 Msa1106580:intron 35.0%
TGCATAATATGTGTAAGGTC+CGG - chr7_3:46639913-46639932 Msa1106580:intron 35.0%
!!! TTTTTTTTTCGTGCTAGCCA+AGG + chr7_3:46639947-46639966 None:intergenic 35.0%
ACAATGATCGGAGTGATAAT+TGG - chr7_3:46640105-46640124 Msa1106580:intron 35.0%
TAATTGGCAATGATGATTGG+CGG - chr7_3:46640121-46640140 Msa1106580:intron 35.0%
!! GTTTTAAATGGTGATCACAG+TGG - chr7_3:46640222-46640241 Msa1106580:intron 35.0%
TAGAGGTGATCTAAGAAAGT+TGG - chr7_3:46640288-46640307 Msa1106580:intron 35.0%
ATCTAAGAAAGTTGGAGTGA+TGG - chr7_3:46640296-46640315 Msa1106580:intron 35.0%
TCATAGGATGGAAAAAGAAG+CGG - chr7_3:46640878-46640897 Msa1106580:intron 35.0%
GTTATCCAGCTGATTATTTG+TGG - chr7_3:46641151-46641170 Msa1106580:intron 35.0%
GATTATTTGTGGCATGTTCT+AGG - chr7_3:46641162-46641181 Msa1106580:intron 35.0%
GCACCAAAATATTCTCTTCT+AGG - chr7_3:46641226-46641245 Msa1106580:intron 35.0%
TGTTATGATATCAGAGAGGT+AGG - chr7_3:46641255-46641274 Msa1106580:intron 35.0%
! CATGTTTTCCAAACCTCTTA+TGG + chr7_3:46641351-46641370 None:intergenic 35.0%
GTAGAAGGTGATTTGATACA+AGG - chr7_3:46641397-46641416 Msa1106580:intron 35.0%
ATTTGATACAAGGGCAAACA+AGG - chr7_3:46641407-46641426 Msa1106580:intron 35.0%
TTTGATACAAGGGCAAACAA+GGG - chr7_3:46641408-46641427 Msa1106580:intron 35.0%
TTAAAAAATTCTCAGGCGAG+AGG + chr7_3:46641514-46641533 None:intergenic 35.0%
AGATGTTTAATAAGAGGGAG+GGG + chr7_3:46641617-46641636 None:intergenic 35.0%
GAGATGTTTAATAAGAGGGA+GGG + chr7_3:46641618-46641637 None:intergenic 35.0%
AGAGATGTTTAATAAGAGGG+AGG + chr7_3:46641619-46641638 None:intergenic 35.0%
TGTCGACGTAAAAATAATGG+TGG - chr7_3:46641730-46641749 Msa1106580:intron 35.0%
ACGTAAAAATAATGGTGGCA+TGG - chr7_3:46641735-46641754 Msa1106580:intron 35.0%
! TAATGGTGGCATGGATTTTA+AGG - chr7_3:46641744-46641763 Msa1106580:intron 35.0%
AATTGGGTTATTGCCTAAGT+TGG + chr7_3:46641893-46641912 None:intergenic 35.0%
!! TTGAATGCTGAAAGCATTGA+TGG - chr7_3:46641931-46641950 Msa1106580:intron 35.0%
AACTATCCACAGTAAACTCA+CGG + chr7_3:46641981-46642000 None:intergenic 35.0%
CAATTCATCATTCCAACTCT+TGG + chr7_3:46642019-46642038 None:intergenic 35.0%
GTTGGAATGATGAATTGCTA+AGG - chr7_3:46642022-46642041 Msa1106580:intron 35.0%
CCTTGAGAACTACAATCATT+TGG + chr7_3:46642097-46642116 None:intergenic 35.0%
CCAAATGATTGTAGTTCTCA+AGG - chr7_3:46642094-46642113 Msa1106580:intron 35.0%
CATTAGTGCAATAAGAAGAC+GGG + chr7_3:46642336-46642355 None:intergenic 35.0%
! CTTTTCCCCCCTAATTATAT+CGG - chr7_3:46643074-46643093 Msa1106580:CDS 35.0%
ATACACCGATATAATTAGGG+GGG + chr7_3:46643082-46643101 None:intergenic 35.0%
TATATGACAAGATAACCTCG+TGG - chr7_3:46643099-46643118 Msa1106580:CDS 35.0%
!! TCAGTTGTTGTTTCAGCAGT+TGG - chr7_3:46639234-46639253 Msa1106580:intron 40.0%
GTTGGAGATGTATCTTCTGA+TGG - chr7_3:46639252-46639271 Msa1106580:intron 40.0%
GGCACTATTTATCTTGTTGC+TGG - chr7_3:46639273-46639292 Msa1106580:intron 40.0%
!! TATCTTGTTGCTGGTGCTAT+TGG - chr7_3:46639282-46639301 Msa1106580:intron 40.0%
GCTATTGGAATTGCTCTTGT+TGG - chr7_3:46639297-46639316 Msa1106580:intron 40.0%
GCATAATATGTGTAAGGTCC+GGG - chr7_3:46639914-46639933 Msa1106580:intron 40.0%
CATAATATGTGTAAGGTCCG+GGG - chr7_3:46639915-46639934 Msa1106580:intron 40.0%
TGGTTGAAACTGGTTGTTGT+TGG - chr7_3:46640035-46640054 Msa1106580:intron 40.0%
! TTGAAACTGGTTGTTGTTGG+AGG - chr7_3:46640038-46640057 Msa1106580:intron 40.0%
CAAACAGTGGCTACAATGAT+CGG - chr7_3:46640093-46640112 Msa1106580:intron 40.0%
GCAACGATCAGAATGATGAT+TGG - chr7_3:46640154-46640173 Msa1106580:intron 40.0%
ACGATCAGAATGATGATTGG+TGG - chr7_3:46640157-46640176 Msa1106580:intron 40.0%
! AGAATGATGATTGGTGGACA+AGG - chr7_3:46640163-46640182 Msa1106580:intron 40.0%
! GAATGATGATTGGTGGACAA+GGG - chr7_3:46640164-46640183 Msa1106580:intron 40.0%
! CTATGACCACTAATTGACTC+CGG + chr7_3:46640200-46640219 None:intergenic 40.0%
AGTGGTGATCAGAGTATATG+TGG - chr7_3:46640240-46640259 Msa1106580:intron 40.0%
!! GAGTATATGTGGTGTCATAG+TGG - chr7_3:46640251-46640270 Msa1106580:intron 40.0%
!! TATATGTGGTGTCATAGTGG+TGG - chr7_3:46640254-46640273 Msa1106580:intron 40.0%
AACGTTTCATGTTACCACCA+AGG + chr7_3:46640385-46640404 None:intergenic 40.0%
!! CAGGATTTGTTAGGAAAGGT+GGG - chr7_3:46640646-46640665 Msa1106580:intron 40.0%
!! AGGATTTGTTAGGAAAGGTG+GGG - chr7_3:46640647-46640666 Msa1106580:intron 40.0%
ATTGTTTGTGCTCGTTGTGA+TGG - chr7_3:46640711-46640730 Msa1106580:intron 40.0%
TCATAGGGTGGGAAAAGTAA+TGG + chr7_3:46640787-46640806 None:intergenic 40.0%
ACATGCCACAAATAATCAGC+TGG + chr7_3:46641159-46641178 None:intergenic 40.0%
ACTTCAAACGGAGAGAATTG+AGG - chr7_3:46641315-46641334 Msa1106580:intron 40.0%
CCAATTTATACCACGGCTAT+TGG + chr7_3:46641694-46641713 None:intergenic 40.0%
CCAATAGCCGTGGTATAAAT+TGG - chr7_3:46641691-46641710 Msa1106580:intron 40.0%
CAAGAGATTGTCACTCTGTT+TGG + chr7_3:46641819-46641838 None:intergenic 40.0%
CTTTCAGCATTCAACAACCA+AGG + chr7_3:46641925-46641944 None:intergenic 40.0%
GTAACAACCATTCCAAGAGT+TGG - chr7_3:46642004-46642023 Msa1106580:intron 40.0%
CATCATTCCAACTCTTGGAA+TGG + chr7_3:46642014-46642033 None:intergenic 40.0%
ATGATTGTAGTTCTCAAGGG+AGG - chr7_3:46642098-46642117 Msa1106580:intron 40.0%
TGATTGTAGTTCTCAAGGGA+GGG - chr7_3:46642099-46642118 Msa1106580:intron 40.0%
AATAAGAAGACGGGACAGAT+GGG + chr7_3:46642327-46642346 None:intergenic 40.0%
CAGTCAAAGAAGTGAAGAGA+CGG - chr7_3:46642822-46642841 Msa1106580:intron 40.0%
AAATAGCGTTAAGACGAGCA+CGG + chr7_3:46642851-46642870 None:intergenic 40.0%
CGATATAATTAGGGGGGAAA+AGG + chr7_3:46643076-46643095 None:intergenic 40.0%
TTGTATATTCCTTGTCCACG+AGG + chr7_3:46643117-46643136 None:intergenic 40.0%
! AAACTGGTTGTTGTTGGAGG+AGG - chr7_3:46640041-46640060 Msa1106580:intron 45.0%
!! AGGAGGTGTTGGACAACTAT+CGG - chr7_3:46640058-46640077 Msa1106580:intron 45.0%
GAGTGGTGAATAGCAAACAG+TGG - chr7_3:46640080-46640099 Msa1106580:intron 45.0%
AGTTGGAGTGATGGTTGACT+TGG - chr7_3:46640305-46640324 Msa1106580:intron 45.0%
!! GTCTTAGTGTTGGTCGTTGA+TGG - chr7_3:46640351-46640370 Msa1106580:intron 45.0%
ATCAGATGCCCTGAATGTGA+TGG - chr7_3:46640621-46640640 Msa1106580:intron 45.0%
ATCCTGCTCCATCACATTCA+GGG + chr7_3:46640632-46640651 None:intergenic 45.0%
AATCCTGCTCCATCACATTC+AGG + chr7_3:46640633-46640652 None:intergenic 45.0%
! GTGATGGAGCAGGATTTGTT+AGG - chr7_3:46640637-46640656 Msa1106580:intron 45.0%
!! GGAGCAGGATTTGTTAGGAA+AGG - chr7_3:46640642-46640661 Msa1106580:intron 45.0%
!! GCAGGATTTGTTAGGAAAGG+TGG - chr7_3:46640645-46640664 Msa1106580:intron 45.0%
GAGAGCAAATGCAGCAAGAA+AGG - chr7_3:46640677-46640696 Msa1106580:intron 45.0%
TTGTGCTCGTTGTGATGGTT+TGG - chr7_3:46640716-46640735 Msa1106580:intron 45.0%
TGTGCTCGTTGTGATGGTTT+GGG - chr7_3:46640717-46640736 Msa1106580:intron 45.0%
AGTTTCTCGTGGACCCTATT+CGG - chr7_3:46640806-46640825 Msa1106580:intron 45.0%
TCAAACGGAGAGAATTGAGG+TGG - chr7_3:46641318-46641337 Msa1106580:intron 45.0%
GAGGTGAACCATAAGAGGTT+TGG - chr7_3:46641340-46641359 Msa1106580:intron 45.0%
! TGGCCAAGTTGAAAGCAGAT+GGG + chr7_3:46641771-46641790 None:intergenic 45.0%
! ATGGCCAAGTTGAAAGCAGA+TGG + chr7_3:46641772-46641791 None:intergenic 45.0%
TTGGCCATGCTCGATAAACA+AGG - chr7_3:46641784-46641803 Msa1106580:intron 45.0%
TGGCCATGCTCGATAAACAA+GGG - chr7_3:46641785-46641804 Msa1106580:intron 45.0%
ATTCGTCCGTGAGTTTACTG+TGG - chr7_3:46641972-46641991 Msa1106580:intron 45.0%
GATTGTAGTTCTCAAGGGAG+GGG - chr7_3:46642100-46642119 Msa1106580:intron 45.0%
CAATAAGAAGACGGGACAGA+TGG + chr7_3:46642328-46642347 None:intergenic 45.0%
ACAAGATAACCTCGTGGACA+AGG - chr7_3:46643105-46643124 Msa1106580:CDS 45.0%
!! AAATATAATTTAAATTGTAT+AGG - chr7_3:46640842-46640861 Msa1106580:intron 5.0%
!! AATATAATTTAAATTGTATA+GGG - chr7_3:46640843-46640862 Msa1106580:intron 5.0%
! GTTGTTGTTGGAGGAGGTGT+TGG - chr7_3:46640047-46640066 Msa1106580:intron 50.0%
GTGTTGGACAACTATCGGAG+TGG - chr7_3:46640063-46640082 Msa1106580:intron 50.0%
! AATGATGATTGGCGGACAGG+TGG - chr7_3:46640129-46640148 Msa1106580:intron 50.0%
! TGGTGGACAAGGGATTGCAA+TGG - chr7_3:46640174-46640193 Msa1106580:intron 50.0%
CAATGGCCGGAGTCAATTAG+TGG - chr7_3:46640191-46640210 Msa1106580:intron 50.0%
!! TGTGGTGTCATAGTGGTGGT+TGG - chr7_3:46640258-46640277 Msa1106580:intron 50.0%
!! GGAGTGATGGTTGACTTGGT+CGG - chr7_3:46640309-46640328 Msa1106580:intron 50.0%
!! GTTGGTGGTGGTCTTAGTGT+TGG - chr7_3:46640341-46640360 Msa1106580:intron 50.0%
!! CGTTGATGGTCATCGATCCT+TGG - chr7_3:46640365-46640384 Msa1106580:intron 50.0%
TGATGGTCATCGATCCTTGG+TGG - chr7_3:46640368-46640387 Msa1106580:intron 50.0%
CCACGAGAAACTCATAGGGT+GGG + chr7_3:46640798-46640817 None:intergenic 50.0%
TCCACGAGAAACTCATAGGG+TGG + chr7_3:46640799-46640818 None:intergenic 50.0%
GGGTCCACGAGAAACTCATA+GGG + chr7_3:46640802-46640821 None:intergenic 50.0%
AGGGTCCACGAGAAACTCAT+AGG + chr7_3:46640803-46640822 None:intergenic 50.0%
CGCGTGAGAAACTCATAGGA+TGG - chr7_3:46640866-46640885 Msa1106580:intron 50.0%
AACGGAGAGAATTGAGGTGG+AGG - chr7_3:46641321-46641340 Msa1106580:intron 50.0%
AGGTGGAGGTGAACCATAAG+AGG - chr7_3:46641335-46641354 Msa1106580:intron 50.0%
GGACCCATCTGCTTTCAACT+TGG - chr7_3:46641765-46641784 Msa1106580:intron 50.0%
! CCACCCTTGTTTATCGAGCA+TGG + chr7_3:46641791-46641810 None:intergenic 50.0%
CCATGCTCGATAAACAAGGG+TGG - chr7_3:46641788-46641807 Msa1106580:intron 50.0%
AAGGTCCGGGGTTCAAACCT+TGG - chr7_3:46639927-46639946 Msa1106580:intron 55.0%
GCTAGCCAAGGTTTGAACCC+CGG + chr7_3:46639935-46639954 None:intergenic 55.0%
! GGCAATGATGATTGGCGGAC+AGG - chr7_3:46640126-46640145 Msa1106580:intron 55.0%
GGACAAGGGATTGCAATGGC+CGG - chr7_3:46640178-46640197 Msa1106580:intron 55.0%
! GGTGTCATAGTGGTGGTTGG+TGG - chr7_3:46640261-46640280 Msa1106580:intron 55.0%
!! GTCATAGTGGTGGTTGGTGG+TGG - chr7_3:46640264-46640283 Msa1106580:intron 55.0%
!! TGGTGGTTGGTGGTGGTTAG+AGG - chr7_3:46640271-46640290 Msa1106580:intron 55.0%
!! GTGATGGTTGACTTGGTCGG+TGG - chr7_3:46640312-46640331 Msa1106580:intron 55.0%
!! TTGACTTGGTCGGTGGTGAG+TGG - chr7_3:46640319-46640338 Msa1106580:intron 55.0%
! TGCCCTGAATGTGATGGAGC+AGG - chr7_3:46640627-46640646 Msa1106580:intron 55.0%
CCCACCCTATGAGTTTCTCG+TGG - chr7_3:46640795-46640814 Msa1106580:intron 55.0%
AGGGCGCGTGAGAAACTCAT+AGG - chr7_3:46640862-46640881 Msa1106580:intron 55.0%
! AATGGTGGTGCCAATAGCCG+TGG - chr7_3:46641681-46641700 Msa1106580:intron 55.0%
CTTGGTCGGTGGTGAGTGGT+TGG - chr7_3:46640323-46640342 Msa1106580:intron 60.0%
GGTCGGTGGTGAGTGGTTGG+TGG - chr7_3:46640326-46640345 Msa1106580:intron 65.0%
!! CGGTGGTGAGTGGTTGGTGG+TGG - chr7_3:46640329-46640348 Msa1106580:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 46638969 46643279 46638969 ID=Msa1106580;Name=Msa1106580
chr7_3 mRNA 46638969 46643279 46638969 ID=Msa1106580-mRNA-1;Parent=Msa1106580;Name=Msa1106580-mRNA-1;_AED=0.31;_eAED=0.31;_QI=145|0.25|0.2|0.4|0.25|0.6|5|0|142
chr7_3 exon 46638969 46638984 46638969 ID=Msa1106580-mRNA-1:exon:9571;Parent=Msa1106580-mRNA-1
chr7_3 exon 46640845 46640850 46640845 ID=Msa1106580-mRNA-1:exon:9570;Parent=Msa1106580-mRNA-1
chr7_3 exon 46640976 46641033 46640976 ID=Msa1106580-mRNA-1:exon:9569;Parent=Msa1106580-mRNA-1
chr7_3 exon 46641516 46641622 46641516 ID=Msa1106580-mRNA-1:exon:9568;Parent=Msa1106580-mRNA-1
chr7_3 exon 46642893 46643279 46642893 ID=Msa1106580-mRNA-1:exon:9567;Parent=Msa1106580-mRNA-1
chr7_3 five_prime_UTR 46643135 46643279 46643135 ID=Msa1106580-mRNA-1:five_prime_utr;Parent=Msa1106580-mRNA-1
chr7_3 CDS 46642893 46643134 46642893 ID=Msa1106580-mRNA-1:cds;Parent=Msa1106580-mRNA-1
chr7_3 CDS 46641516 46641622 46641516 ID=Msa1106580-mRNA-1:cds;Parent=Msa1106580-mRNA-1
chr7_3 CDS 46640976 46641033 46640976 ID=Msa1106580-mRNA-1:cds;Parent=Msa1106580-mRNA-1
chr7_3 CDS 46640845 46640850 46640845 ID=Msa1106580-mRNA-1:cds;Parent=Msa1106580-mRNA-1
chr7_3 CDS 46638969 46638984 46638969 ID=Msa1106580-mRNA-1:cds;Parent=Msa1106580-mRNA-1
Gene Sequence

>Msa1106580

ATGGCATCCATGACCTTGAACACAATCATTCCCAATGTTACAATTTCCAACAACACTAAACTCTTATTTGGAGGCTCAACAAATGTGTCATGTAACAAGATTCATCAGAAGAGATCTTCATCAGTTGTTGTTTCAGCAGTTGGAGATGTATCTTCTGATGGCACTATTTATCTTGTTGCTGGTGCTATTGGAATTGCTCTTGTTGGAACTGCATTTCCTATCATCTTCTCACGTAAAGACACATGCCCTGAATGTGATGGAGCAGGATTTGTTAGGAAAGGTGGGGTGACATTGAGAGCAAATGCAGCAAGAAAGGATCAAACTCAAATTGTTTGTGCTCGTTGTGATGATTTTTCAGCAGCACCAAAATATTCTCTTCTAGGAAGATTTGTTATGATATCAGAGAGTAGAAGAGGAAATATTAGTTAA

Protein sequence

>Msa1106580

MASMTLNTIIPNVTISNNTKLLFGGSTNVSCNKIHQKRSSSVVVSAVGDVSSDGTIYLVAGAIGIALVGTAFPIIFSRKDTCPECDGAGFVRKGGVTLRANAARKDQTQIVCARCDDFSAAPKYSLLGRFVMISESRRGNIS*