AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0092180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092180 MtrunA17_Chr1g0200261 94.891 137 4 3 1 137 1 134 4.48e-88 252
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092180 AT4G32915.1 62.366 93 34 1 44 135 61 153 8.52e-38 126

Find 44 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTCTTCAGGGACTAAAT+TGG 0.236045 1_2:+74548898 Msa0092180:five_prime_UTR
ATCTTGTACCTTGAATTTCT+TGG 0.244732 1_2:+74551489 Msa0092180:three_prime_UTR
TTTGAGAGCACCTGCTCTTA+TGG 0.251754 1_2:-74549701 None:intergenic
CACCGTTGATCAAATGTTTC+AGG 0.262067 1_2:-74551262 None:intergenic
TAGTCCACATTTAGGACTTT+TGG 0.264895 1_2:-74551416 None:intergenic
TTATTCCAGGTTGAAGAATT+TGG 0.268843 1_2:+74549259 Msa0092180:intron
TGATAATGTATTTGTATATA+TGG 0.296042 1_2:+74551634 Msa0092180:three_prime_UTR
ATGTAAGGCTCCTCATAGTT+TGG 0.335054 1_2:-74551386 None:intergenic
TTTGAGATTGAGAGGGATAA+GGG 0.340057 1_2:+74548962 Msa0092180:five_prime_UTR
AAAATTATCGTATTTATAGA+AGG 0.357766 1_2:+74548857 None:intergenic
GACAATGATGATAACGATAA+TGG 0.386635 1_2:-74549038 None:intergenic
TTATGGAGGGCTCAACGCTT+TGG 0.387176 1_2:-74549684 None:intergenic
CCTAAAATTCAGCAGGTGAT+AGG 0.408712 1_2:+74549283 Msa0092180:CDS
TGTCAGGTTTGGACAGCTGC+AGG 0.412387 1_2:+74549651 Msa0092180:intron
ACCTCCGAATGTGTCTCATT+TGG 0.426635 1_2:+74549139 Msa0092180:CDS
TCCTGCTGAGACTTTCTTCA+AGG 0.428362 1_2:+74551686 Msa0092180:three_prime_UTR
AGCAACTCTAGTCCACATTT+AGG 0.432553 1_2:-74551424 None:intergenic
ATGATGGAAATCAGGTCATA+TGG 0.438172 1_2:+74551548 Msa0092180:three_prime_UTR
AAATGGGAATAACCTCAGTT+GGG 0.447493 1_2:-74549187 None:intergenic
AAAATGGGAATAACCTCAGT+TGG 0.458590 1_2:-74549188 None:intergenic
TTAAAGAACCAAGAAATTCA+AGG 0.469932 1_2:-74551497 None:intergenic
TTTGCCAAATGAGACACATT+CGG 0.492233 1_2:-74549143 None:intergenic
TGGAGGGCTCAACGCTTTGG+AGG 0.493750 1_2:-74549681 None:intergenic
GAAACTGTAACAACTTGTGT+TGG 0.494807 1_2:-74549073 None:intergenic
GAGAGCACCTGCTCTTATGG+AGG 0.507859 1_2:-74549698 None:intergenic
CGCTTCTATTCCAAACTATG+AGG 0.512037 1_2:+74551376 Msa0092180:CDS
ATTTGGTCCTAAAATTCAGC+AGG 0.517843 1_2:+74549276 Msa0092180:CDS
TGAAAATTCAAAATAAGAGA+TGG 0.531211 1_2:-74551526 None:intergenic
ACAAGTTGTTACAGTTTCGT+AGG 0.531872 1_2:+74549078 Msa0092180:CDS
AGAGCACCTGCTCTTATGGA+GGG 0.536053 1_2:-74549697 None:intergenic
AAATTCAGCAGGTGATAGGC+TGG 0.554955 1_2:+74549287 Msa0092180:CDS
ACCTTGAAGAAAGTCTCAGC+AGG 0.555968 1_2:-74551687 None:intergenic
GTTGAGCCCTCCATAAGAGC+AGG 0.560192 1_2:+74549691 Msa0092180:CDS
CACCTGAAACATTTGATCAA+CGG 0.566695 1_2:+74551260 Msa0092180:CDS
TAGAATTAAAGGAAGATGAG+TGG 0.581872 1_2:+74548990 Msa0092180:exon
GTTTGGAATAGAAGCGAGGA+TGG 0.592379 1_2:-74551369 None:intergenic
GTCAGGTTTGGACAGCTGCA+GGG 0.601581 1_2:+74549652 Msa0092180:intron
AGTTCCAAAAGTCCTAAATG+TGG 0.611769 1_2:+74551412 Msa0092180:CDS
AATGGGAATAACCTCAGTTG+GGG 0.623565 1_2:-74549186 None:intergenic
CACATTCGGAGGTTCAAGAG+AGG 0.641198 1_2:-74549129 None:intergenic
GCCAAATGAGACACATTCGG+AGG 0.666539 1_2:-74549140 None:intergenic
GGCAAAGTGTTGTTACTCAG+AGG 0.669633 1_2:+74549011 Msa0092180:CDS
CATAGTTTGGAATAGAAGCG+AGG 0.676889 1_2:-74551373 None:intergenic
TATCTCTCTTACCCCAACTG+AGG 0.701029 1_2:+74549175 Msa0092180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAAGAAAAAAAAAAAT+GGG - chr1_2:74549206-74549225 None:intergenic 10.0%
!! ATTGAAAAGAAAAAAAAAAA+TGG - chr1_2:74549207-74549226 None:intergenic 10.0%
!!! TTTAAAATTTCTAATAGTAA+TGG + chr1_2:74549227-74549246 Msa0092180:intron 10.0%
!!! AAAACTCTTTTTATTTTATT+TGG + chr1_2:74549322-74549341 Msa0092180:intron 10.0%
!!! TTTTATAGTAATTTTATGAT+AGG + chr1_2:74549349-74549368 Msa0092180:intron 10.0%
!!! GTTTTTTTTTTTTTTTACAA+AGG + chr1_2:74550955-74550974 Msa0092180:intron 10.0%
!!! TTTATTTTATCATAAACAAA+GGG + chr1_2:74551010-74551029 Msa0092180:intron 10.0%
!! TCACTTAATATATTAAATAA+TGG - chr1_2:74551082-74551101 None:intergenic 10.0%
!! TTTATTCATTATTTGTAAAT+TGG + chr1_2:74551290-74551309 Msa0092180:intron 10.0%
!! TTATTCATTATTTGTAAATT+GGG + chr1_2:74551291-74551310 Msa0092180:intron 10.0%
!! AAATTGGAAATTAAAAAAAC+CGG + chr1_2:74548914-74548933 Msa0092180:five_prime_UTR 15.0%
!! ATATTTGTATTTCAAAAGTA+AGG - chr1_2:74549809-74549828 None:intergenic 15.0%
!!! TTGAAATACAAATATTTTCA+TGG + chr1_2:74549814-74549833 Msa0092180:intron 15.0%
!! TTCATCATTGAAATAAAAAA+TGG + chr1_2:74550029-74550048 Msa0092180:intron 15.0%
!!! AAATTATGATGCTTTTATTT+AGG + chr1_2:74550355-74550374 Msa0092180:intron 15.0%
!!! ATATTTTATATTTCATACAG+TGG + chr1_2:74550925-74550944 Msa0092180:intron 15.0%
!! TTGTTTATGATAAAATAAAG+TGG - chr1_2:74551009-74551028 None:intergenic 15.0%
!!! CTTTATTTTATCATAAACAA+AGG + chr1_2:74551009-74551028 Msa0092180:intron 15.0%
!!! ATAATGGAAATTTATTGTAA+GGG - chr1_2:74551066-74551085 None:intergenic 15.0%
!!! AATAATGGAAATTTATTGTA+AGG - chr1_2:74551067-74551086 None:intergenic 15.0%
!!! TGATAATGTATTTGTATATA+TGG + chr1_2:74551634-74551653 Msa0092180:three_prime_UTR 15.0%
!!! TCATAATTTTCAATTTCTTC+AGG + chr1_2:74548887-74548906 Msa0092180:five_prime_UTR 20.0%
!!! CATAATTTTCAATTTCTTCA+GGG + chr1_2:74548888-74548907 Msa0092180:five_prime_UTR 20.0%
!!! ATTTTATGATAGGATAATTG+AGG + chr1_2:74549359-74549378 Msa0092180:intron 20.0%
!!! TCAATCTAAATTTGAAGTTT+TGG - chr1_2:74549625-74549644 None:intergenic 20.0%
!! GAAATGAGAAATTAGAATAT+TGG - chr1_2:74549728-74549747 None:intergenic 20.0%
!!! AATTTTTTTTAGTGCAAAGT+CGG + chr1_2:74550661-74550680 Msa0092180:intron 20.0%
!! TGAAAATTCAAAATAAGAGA+TGG - chr1_2:74551529-74551548 None:intergenic 20.0%
!!! CTTATTTTGAATTTTCATGA+TGG + chr1_2:74551532-74551551 Msa0092180:three_prime_UTR 20.0%
!!! TAAGGGTTTTGTAGAATTAA+AGG + chr1_2:74548979-74548998 Msa0092180:five_prime_UTR 25.0%
!!! GCTTAACATTTTGTTTCTAA+AGG + chr1_2:74549597-74549616 Msa0092180:intron 25.0%
! ATTAGAGAAACTTCAAAACA+AGG - chr1_2:74549755-74549774 None:intergenic 25.0%
! TGTATTTCAAAAGTAAGGTT+CGG - chr1_2:74549804-74549823 None:intergenic 25.0%
!! TACAAATATTTTCATGGAGA+TGG + chr1_2:74549820-74549839 Msa0092180:intron 25.0%
! TATTGTATGTTAGTTGTTCA+TGG + chr1_2:74549863-74549882 Msa0092180:intron 25.0%
! CTAAGATTACAAACACAAAT+AGG + chr1_2:74550086-74550105 Msa0092180:intron 25.0%
!! TCTGAAAACTATGTTGTTTA+TGG + chr1_2:74550258-74550277 Msa0092180:intron 25.0%
!! CTGAAAACTATGTTGTTTAT+GGG + chr1_2:74550259-74550278 Msa0092180:intron 25.0%
! ACTCATTTAAAAAACGTTCA+TGG - chr1_2:74551141-74551160 None:intergenic 25.0%
!!! ATGAACGTTTTTTAAATGAG+TGG + chr1_2:74551140-74551159 Msa0092180:intron 25.0%
!!! ACTTTTGGAACTTTAATGTA+AGG - chr1_2:74551404-74551423 None:intergenic 25.0%
! TTAAAGAACCAAGAAATTCA+AGG - chr1_2:74551500-74551519 None:intergenic 25.0%
AATTTCTTCAGGGACTAAAT+TGG + chr1_2:74548898-74548917 Msa0092180:five_prime_UTR 30.0%
!! TTAACACGTTGTTTTATCAC+CGG - chr1_2:74548936-74548955 Msa0092170:five_prime_UTR 30.0%
!!! AATAGAGTTTTGAGATTGAG+AGG + chr1_2:74548954-74548973 Msa0092180:five_prime_UTR 30.0%
!!! ATAGAGTTTTGAGATTGAGA+GGG + chr1_2:74548955-74548974 Msa0092180:five_prime_UTR 30.0%
TAGAATTAAAGGAAGATGAG+TGG + chr1_2:74548990-74549009 Msa0092180:exon 30.0%
! GACAATGATGATAACGATAA+TGG - chr1_2:74549041-74549060 None:intergenic 30.0%
! AACAACTTGTGTTGGATTTT+CGG - chr1_2:74549068-74549087 None:intergenic 30.0%
! TTATTCCAGGTTGAAGAATT+TGG + chr1_2:74549259-74549278 Msa0092180:intron 30.0%
!!! TATTTTAACAAACAGGTGGT+GGG - chr1_2:74549410-74549429 None:intergenic 30.0%
ATGCAACACAATATCAAACA+TGG - chr1_2:74549547-74549566 None:intergenic 30.0%
!! TTTAGATTGATTTGTGTGTC+AGG + chr1_2:74549635-74549654 Msa0092180:intron 30.0%
TATGTTAGTTGTTCATGGTT+TGG + chr1_2:74549868-74549887 Msa0092180:intron 30.0%
! TAGTTCAGTTCATACTTTTC+TGG - chr1_2:74549928-74549947 None:intergenic 30.0%
ATTGCTACATGCTAAACAAA+AGG - chr1_2:74549997-74550016 None:intergenic 30.0%
ATGAGAATCATAAGGTTGAA+AGG - chr1_2:74550061-74550080 None:intergenic 30.0%
TAGTCACTATGAGAATCATA+AGG - chr1_2:74550069-74550088 None:intergenic 30.0%
GTTTATTAACTCTTACACGT+AGG + chr1_2:74550172-74550191 Msa0092180:intron 30.0%
TAAACTATCAGTTATCTCAC+AGG - chr1_2:74550511-74550530 None:intergenic 30.0%
! TGTTTTCAGTTCATGAATGA+AGG - chr1_2:74550755-74550774 None:intergenic 30.0%
CGAGAAGAAAGCAAATAATA+TGG - chr1_2:74550861-74550880 None:intergenic 30.0%
! TACAAAGGAGCAAATTTTCT+AGG + chr1_2:74550970-74550989 Msa0092180:intron 30.0%
! ACAAAGGAGCAAATTTTCTA+GGG + chr1_2:74550971-74550990 Msa0092180:intron 30.0%
ATCATAAACAAAGGGAAGAA+AGG + chr1_2:74551018-74551037 Msa0092180:intron 30.0%
ACGTTCATGGAATTAAAATC+AGG - chr1_2:74551128-74551147 None:intergenic 30.0%
AAATGAGTGGTAGAAAACAT+TGG + chr1_2:74551153-74551172 Msa0092180:intron 30.0%
! AGTCTTCATGAGTTTCTTTT+AGG - chr1_2:74551466-74551485 None:intergenic 30.0%
ATCTTGTACCTTGAATTTCT+TGG + chr1_2:74551489-74551508 Msa0092180:three_prime_UTR 30.0%
!! GAATTTTCATGATGGAAATC+AGG + chr1_2:74551540-74551559 Msa0092180:three_prime_UTR 30.0%
!!! TTTTGAGATTGAGAGGGATA+AGG + chr1_2:74548961-74548980 Msa0092180:five_prime_UTR 35.0%
! TTTGAGATTGAGAGGGATAA+GGG + chr1_2:74548962-74548981 Msa0092180:five_prime_UTR 35.0%
GAAACTGTAACAACTTGTGT+TGG - chr1_2:74549076-74549095 None:intergenic 35.0%
ACAAGTTGTTACAGTTTCGT+AGG + chr1_2:74549078-74549097 Msa0092180:CDS 35.0%
TTTGCCAAATGAGACACATT+CGG - chr1_2:74549146-74549165 None:intergenic 35.0%
AAATGGGAATAACCTCAGTT+GGG - chr1_2:74549190-74549209 None:intergenic 35.0%
AAAATGGGAATAACCTCAGT+TGG - chr1_2:74549191-74549210 None:intergenic 35.0%
ATGGTGATTCATGTTATTCC+AGG + chr1_2:74549246-74549265 Msa0092180:intron 35.0%
ATTTGGTCCTAAAATTCAGC+AGG + chr1_2:74549276-74549295 Msa0092180:CDS 35.0%
!!! GTATTTTAACAAACAGGTGG+TGG - chr1_2:74549411-74549430 None:intergenic 35.0%
!!! GAAGGGGTATTTTAACAAAC+AGG - chr1_2:74549417-74549436 None:intergenic 35.0%
! GAATCCAGTGTTGGAATAAA+AGG - chr1_2:74549446-74549465 None:intergenic 35.0%
AAACAACATGAATCCAGTGT+TGG - chr1_2:74549455-74549474 None:intergenic 35.0%
AACACTGGATTCATGTTGTT+TGG + chr1_2:74549454-74549473 Msa0092180:intron 35.0%
! ACACTGGATTCATGTTGTTT+GGG + chr1_2:74549455-74549474 Msa0092180:intron 35.0%
ACATCCATGCTAACAAACAT+TGG - chr1_2:74549482-74549501 None:intergenic 35.0%
!! ATTGATTTGTGTGTCAGGTT+TGG + chr1_2:74549640-74549659 Msa0092180:intron 35.0%
!!! TTTTCTGGTTCAGTTTCGTT+CGG - chr1_2:74549913-74549932 None:intergenic 35.0%
GTTTGTGACATTCCAGATTT+AGG + chr1_2:74550317-74550336 Msa0092180:intron 35.0%
CGAACACTAAATCCTAAATC+TGG - chr1_2:74550332-74550351 None:intergenic 35.0%
TTGGTGCAAATTGTTCTTTC+CGG + chr1_2:74550570-74550589 Msa0092180:intron 35.0%
TTGTGCTGAACTGTACAAAA+TGG + chr1_2:74550635-74550654 Msa0092180:intron 35.0%
AACAAAGGGAAGAAAGGAAT+AGG + chr1_2:74551024-74551043 Msa0092180:intron 35.0%
ACAAAGGGAAGAAAGGAATA+GGG + chr1_2:74551025-74551044 Msa0092180:intron 35.0%
! TAGAAAACATTGGTGCTTGT+TGG + chr1_2:74551163-74551182 Msa0092180:intron 35.0%
CACCTGAAACATTTGATCAA+CGG + chr1_2:74551260-74551279 Msa0092180:CDS 35.0%
ATAGATTGCTATCCTTGACA+GGG + chr1_2:74551343-74551362 Msa0092180:intron 35.0%
AGTTCCAAAAGTCCTAAATG+TGG + chr1_2:74551412-74551431 Msa0092180:CDS 35.0%
!! TAGTCCACATTTAGGACTTT+TGG - chr1_2:74551419-74551438 None:intergenic 35.0%
! ATGATGGAAATCAGGTCATA+TGG + chr1_2:74551548-74551567 Msa0092180:three_prime_UTR 35.0%
AATGGGAATAACCTCAGTTG+GGG - chr1_2:74549189-74549208 None:intergenic 40.0%
TAGGACCAAATTCTTCAACC+TGG - chr1_2:74549267-74549286 None:intergenic 40.0%
! CCTATCACCTGCTGAATTTT+AGG - chr1_2:74549286-74549305 None:intergenic 40.0%
CCTAAAATTCAGCAGGTGAT+AGG + chr1_2:74549283-74549302 Msa0092180:CDS 40.0%
GGATAATTGAGGAACAACAC+TGG + chr1_2:74549370-74549389 Msa0092180:intron 40.0%
!!! GGGGTATTTTAACAAACAGG+TGG - chr1_2:74549414-74549433 None:intergenic 40.0%
! CCAGTGTTGGAATAAAAGGT+GGG - chr1_2:74549442-74549461 None:intergenic 40.0%
! TCCAGTGTTGGAATAAAAGG+TGG - chr1_2:74549443-74549462 None:intergenic 40.0%
!! AGTTGTTCATGGTTTGGTTC+AGG + chr1_2:74549874-74549893 Msa0092180:intron 40.0%
GAGTTACTGACATGCTACAA+AGG - chr1_2:74550420-74550439 None:intergenic 40.0%
TATCAGTTATCTCACAGGTC+AGG - chr1_2:74550506-74550525 None:intergenic 40.0%
!! TGCTCGATTCGTGAACTTTT+TGG + chr1_2:74550551-74550570 Msa0092180:intron 40.0%
! TAGCAGTTCGGTTCAGATTT+TGG + chr1_2:74550691-74550710 Msa0092180:intron 40.0%
! AGCAGTTCGGTTCAGATTTT+GGG + chr1_2:74550692-74550711 Msa0092180:intron 40.0%
! TAACAGCCCTTGTTATGAGT+TGG + chr1_2:74550719-74550738 Msa0092180:intron 40.0%
AGCCTACCAACTCATAACAA+GGG - chr1_2:74550728-74550747 None:intergenic 40.0%
TGCTTTCCTATACTTCACCT+TGG + chr1_2:74550882-74550901 Msa0092180:intron 40.0%
GGAATTAAAATCAGGTGCAG+AGG - chr1_2:74551120-74551139 None:intergenic 40.0%
CACCGTTGATCAAATGTTTC+AGG - chr1_2:74551265-74551284 None:intergenic 40.0%
GTCAAGGATAGCAATCTATC+AGG - chr1_2:74551342-74551361 None:intergenic 40.0%
GATAGATTGCTATCCTTGAC+AGG + chr1_2:74551342-74551361 Msa0092180:intron 40.0%
! CATAGTTTGGAATAGAAGCG+AGG - chr1_2:74551376-74551395 None:intergenic 40.0%
CGCTTCTATTCCAAACTATG+AGG + chr1_2:74551376-74551395 Msa0092180:CDS 40.0%
ATGTAAGGCTCCTCATAGTT+TGG - chr1_2:74551389-74551408 None:intergenic 40.0%
AGCAACTCTAGTCCACATTT+AGG - chr1_2:74551427-74551446 None:intergenic 40.0%
!! GGCAAAGTGTTGTTACTCAG+AGG + chr1_2:74549011-74549030 Msa0092180:CDS 45.0%
ACCTCCGAATGTGTCTCATT+TGG + chr1_2:74549139-74549158 Msa0092180:CDS 45.0%
TATCTCTCTTACCCCAACTG+AGG + chr1_2:74549175-74549194 Msa0092180:CDS 45.0%
AAATTCAGCAGGTGATAGGC+TGG + chr1_2:74549287-74549306 Msa0092180:CDS 45.0%
GAATAAAAGGTGGGTGGAAG+GGG - chr1_2:74549433-74549452 None:intergenic 45.0%
GGAATAAAAGGTGGGTGGAA+GGG - chr1_2:74549434-74549453 None:intergenic 45.0%
TGGAATAAAAGGTGGGTGGA+AGG - chr1_2:74549435-74549454 None:intergenic 45.0%
GTGTTGGAATAAAAGGTGGG+TGG - chr1_2:74549439-74549458 None:intergenic 45.0%
! CCCACCTTTTATTCCAACAC+TGG + chr1_2:74549439-74549458 Msa0092180:intron 45.0%
! GGGTCCAATGTTTGTTAGCA+TGG + chr1_2:74549475-74549494 Msa0092180:intron 45.0%
!! TTTGAGAGCACCTGCTCTTA+TGG - chr1_2:74549704-74549723 None:intergenic 45.0%
! TCTGGAATGTCACAAACCTG+CGG - chr1_2:74550314-74550333 None:intergenic 45.0%
TTGTTCTTTCCGGTGCAGTT+TGG + chr1_2:74550580-74550599 Msa0092180:intron 45.0%
CAGTTCAGCACAAACTGAAC+TGG - chr1_2:74550628-74550647 None:intergenic 45.0%
! GTCGGTTCAGTTTAGCAGTT+CGG + chr1_2:74550679-74550698 Msa0092180:intron 45.0%
!! AGCCCTTGTTATGAGTTGGT+AGG + chr1_2:74550723-74550742 Msa0092180:intron 45.0%
CAGCCTACCAACTCATAACA+AGG - chr1_2:74550729-74550748 None:intergenic 45.0%
GAAACAAACTTGCACGACCA+AGG - chr1_2:74550902-74550921 None:intergenic 45.0%
! AACATTGGTGCTTGTTGGCT+TGG + chr1_2:74551168-74551187 Msa0092180:intron 45.0%
CATATTGCGTAGCCAACTGA+CGG + chr1_2:74551314-74551333 Msa0092180:intron 45.0%
! GTTTGGAATAGAAGCGAGGA+TGG - chr1_2:74551372-74551391 None:intergenic 45.0%
TCCTGCTGAGACTTTCTTCA+AGG + chr1_2:74551686-74551705 Msa0092180:three_prime_UTR 45.0%
ACCTTGAAGAAAGTCTCAGC+AGG - chr1_2:74551690-74551709 None:intergenic 45.0%
!!! AATATAATATTTTTTTATCT+AGG + chr1_2:74550443-74550462 Msa0092180:intron 5.0%
CACATTCGGAGGTTCAAGAG+AGG - chr1_2:74549132-74549151 None:intergenic 50.0%
GCCAAATGAGACACATTCGG+AGG - chr1_2:74549143-74549162 None:intergenic 50.0%
TCGAAATGTGACAGCTCACG+AGG + chr1_2:74549575-74549594 Msa0092180:intron 50.0%
TTATGGAGGGCTCAACGCTT+TGG - chr1_2:74549687-74549706 None:intergenic 50.0%
! AGAGCACCTGCTCTTATGGA+GGG - chr1_2:74549700-74549719 None:intergenic 50.0%
GTTCGCTAACCAAACTGCAC+CGG - chr1_2:74550592-74550611 None:intergenic 50.0%
GCACGACCAAGGTGAAGTAT+AGG - chr1_2:74550891-74550910 None:intergenic 50.0%
! ATCTATCAGGCACCGTCAGT+TGG - chr1_2:74551329-74551348 None:intergenic 50.0%
TGTCAGGTTTGGACAGCTGC+AGG + chr1_2:74549651-74549670 Msa0092180:intron 55.0%
GTCAGGTTTGGACAGCTGCA+GGG + chr1_2:74549652-74549671 Msa0092180:intron 55.0%
GTTGAGCCCTCCATAAGAGC+AGG + chr1_2:74549691-74549710 Msa0092180:CDS 55.0%
!! GAGAGCACCTGCTCTTATGG+AGG - chr1_2:74549701-74549720 None:intergenic 55.0%
!! TTCCATGTCTGAAGCACCGC+AGG + chr1_2:74550295-74550314 Msa0092180:intron 55.0%
AACCTGCGGTGCTTCAGACA+TGG - chr1_2:74550300-74550319 None:intergenic 55.0%
! ATCAGGTGCAGAGGCATGTC+AGG - chr1_2:74551111-74551130 None:intergenic 55.0%
CGAGGATGGTATCCCTGTCA+AGG - chr1_2:74551358-74551377 None:intergenic 55.0%
TGGAGGGCTCAACGCTTTGG+AGG - chr1_2:74549684-74549703 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 74548867 74551715 74548867 ID=Msa0092180;Name=Msa0092180
chr1_2 mRNA 74548867 74551715 74548867 ID=Msa0092180-mRNA-1;Parent=Msa0092180;Name=Msa0092180-mRNA-1;_AED=0.07;_eAED=0.07;_QI=138|1|1|1|1|1|5|276|137
chr1_2 exon 74548867 74549196 74548867 ID=Msa0092180-mRNA-1:exon:26257;Parent=Msa0092180-mRNA-1
chr1_2 exon 74549268 74549308 74549268 ID=Msa0092180-mRNA-1:exon:26258;Parent=Msa0092180-mRNA-1
chr1_2 exon 74549657 74549712 74549657 ID=Msa0092180-mRNA-1:exon:26259;Parent=Msa0092180-mRNA-1
chr1_2 exon 74551233 74551281 74551233 ID=Msa0092180-mRNA-1:exon:26260;Parent=Msa0092180-mRNA-1
chr1_2 exon 74551364 74551715 74551364 ID=Msa0092180-mRNA-1:exon:26261;Parent=Msa0092180-mRNA-1
chr1_2 five_prime_UTR 74548867 74549004 74548867 ID=Msa0092180-mRNA-1:five_prime_utr;Parent=Msa0092180-mRNA-1
chr1_2 CDS 74549005 74549196 74549005 ID=Msa0092180-mRNA-1:cds;Parent=Msa0092180-mRNA-1
chr1_2 CDS 74549268 74549308 74549268 ID=Msa0092180-mRNA-1:cds;Parent=Msa0092180-mRNA-1
chr1_2 CDS 74549657 74549712 74549657 ID=Msa0092180-mRNA-1:cds;Parent=Msa0092180-mRNA-1
chr1_2 CDS 74551233 74551281 74551233 ID=Msa0092180-mRNA-1:cds;Parent=Msa0092180-mRNA-1
chr1_2 CDS 74551364 74551439 74551364 ID=Msa0092180-mRNA-1:cds;Parent=Msa0092180-mRNA-1
chr1_2 three_prime_UTR 74551440 74551715 74551440 ID=Msa0092180-mRNA-1:three_prime_utr;Parent=Msa0092180-mRNA-1
Gene Sequence

>Msa0092180

ATGAGTGGCAAAGTGTTGTTACTCAGAGGAACACCATTATCGTTATCATCATTGTCGAATCCGAAAATCCAACACAAGTTGTTACAGTTTCGTAGGTTGTCTTCAAAAAAAACTAATTGTTGTTCCTCTCTTGAACCTCCGAATGTGTCTCATTTGGCAAAAACAGCTCATATCTCTCTTACCCCAACTGAGGTTGAAGAATTTGGTCCTAAAATTCAGCAGGTGATAGGCTGGTTTGGACAGCTGCAGGGTGTTGACCTCCAAAGCGTTGAGCCCTCCATAAGAGCAGATACTGAAAACAATTTGCGTGACAATACACCTGAAACATTTGATCAACGGGATACCATCCTCGCTTCTATTCCAAACTATGAGGAGCCTTACATTAAAGTTCCAAAAGTCCTAAATGTGGACTAG

Protein sequence

>Msa0092180

MSGKVLLLRGTPLSLSSLSNPKIQHKLLQFRRLSSKKTNCCSSLEPPNVSHLAKTAHISLTPTEVEEFGPKIQQVIGWFGQLQGVDLQSVEPSIRADTENNLRDNTPETFDQRDTILASIPNYEEPYIKVPKVLNVD*