AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0177280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177280 MtrunA17_Chr1g0200261 94.891 137 4 3 1 137 1 134 4.48e-88 252
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177280 AT4G32915.1 62.366 93 34 1 44 135 61 153 8.52e-38 126

Find 45 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTCTTCAGGGACTAAAT+TGG 0.236045 1_4:+64174630 Msa0177280:five_prime_UTR
ATCTTGTACCTTGAATTTCT+TGG 0.244732 1_4:+64177247 Msa0177280:three_prime_UTR
TTTGAGAGCACCTGCTCTTA+TGG 0.251754 1_4:-64175459 None:intergenic
CACCGTTGATCAAATGTTTC+AGG 0.262067 1_4:-64177020 None:intergenic
TAGTCCACATTTAGGACTTT+TGG 0.264895 1_4:-64177174 None:intergenic
TTATTCCAGGTTGAAGAATT+TGG 0.268843 1_4:+64175018 Msa0177280:intron
AAAATTATCTTATTTATAGA+AGG 0.307382 1_4:+64174589 None:intergenic
ATGTAAGGCTCCTCATAGTT+TGG 0.335054 1_4:-64177144 None:intergenic
ATTGAGATTGAGAGGGATAA+GGG 0.335680 1_4:+64174702 Msa0177280:five_prime_UTR
GATTGAGATTGAGAGGGATA+AGG 0.343169 1_4:+64174701 Msa0177280:five_prime_UTR
GTGATAATGTATTTAATATA+TGG 0.367855 1_4:+64177391 Msa0177280:three_prime_UTR
GACAATGATGATAACGATAA+TGG 0.386635 1_4:-64174778 None:intergenic
TTATGGAGGGCTCAACGCTT+TGG 0.387176 1_4:-64175442 None:intergenic
CCTAAAATTCAGCAGGTGAT+AGG 0.408712 1_4:+64175042 Msa0177280:CDS
TGTCAGGTTTGGACAGCTGC+AGG 0.412387 1_4:+64175409 Msa0177280:intron
ACCTCCGAATGTGTCTCATT+TGG 0.426635 1_4:+64174879 Msa0177280:CDS
TCCTGCTGAGACTTTCTTCA+AGG 0.428362 1_4:+64177443 Msa0177280:three_prime_UTR
AGCAACTCTAGTCCACATTT+AGG 0.432553 1_4:-64177182 None:intergenic
ATGATGGAAATCAGGTCATA+TGG 0.438172 1_4:+64177306 Msa0177280:three_prime_UTR
AAATGGGAATAACCTCAGTT+GGG 0.447493 1_4:-64174927 None:intergenic
AAAATGGGAATAACCTCAGT+TGG 0.458590 1_4:-64174928 None:intergenic
TTAAAGAACCAAGAAATTCA+AGG 0.469932 1_4:-64177255 None:intergenic
TTTGCCAAATGAGACACATT+CGG 0.492233 1_4:-64174883 None:intergenic
TGGAGGGCTCAACGCTTTGG+AGG 0.493750 1_4:-64175439 None:intergenic
GAAACTGTAACAACTTGTGT+TGG 0.494807 1_4:-64174813 None:intergenic
GAGAGCACCTGCTCTTATGG+AGG 0.507859 1_4:-64175456 None:intergenic
CGCTTCTATTCCAAACTATG+AGG 0.512037 1_4:+64177134 Msa0177280:CDS
ATTTGGTCCTAAAATTCAGC+AGG 0.517843 1_4:+64175035 Msa0177280:CDS
TGAAAATTCAAAATAAGAGA+TGG 0.531211 1_4:-64177284 None:intergenic
ACAAGTTGTTACAGTTTCGT+AGG 0.531872 1_4:+64174818 Msa0177280:CDS
AGAGCACCTGCTCTTATGGA+GGG 0.536053 1_4:-64175455 None:intergenic
AAATTCAGCAGGTGATAGGC+TGG 0.554955 1_4:+64175046 Msa0177280:CDS
ACCTTGAAGAAAGTCTCAGC+AGG 0.555968 1_4:-64177444 None:intergenic
GTTGAGCCCTCCATAAGAGC+AGG 0.560192 1_4:+64175449 Msa0177280:CDS
CACCTGAAACATTTGATCAA+CGG 0.566695 1_4:+64177018 Msa0177280:CDS
TAGAATTAAAGGAAGATGAG+TGG 0.581872 1_4:+64174730 Msa0177280:exon
GTTTGGAATAGAAGCGAGGA+TGG 0.592379 1_4:-64177127 None:intergenic
GTCAGGTTTGGACAGCTGCA+GGG 0.601581 1_4:+64175410 Msa0177280:intron
AGTTCCAAAAGTCCTAAATG+TGG 0.611769 1_4:+64177170 Msa0177280:CDS
AATGGGAATAACCTCAGTTG+GGG 0.623565 1_4:-64174926 None:intergenic
CACATTCGGAGGTTCAAGAG+AGG 0.641198 1_4:-64174869 None:intergenic
GCCAAATGAGACACATTCGG+AGG 0.666539 1_4:-64174880 None:intergenic
GGCAAAGTGTTGTTACTCAG+AGG 0.669633 1_4:+64174751 Msa0177280:CDS
CATAGTTTGGAATAGAAGCG+AGG 0.676889 1_4:-64177131 None:intergenic
TATCTCTCTTACCCCAACTG+AGG 0.701029 1_4:+64174915 Msa0177280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGGAAAAAAAAAAAAAAT+GGG - chr1_4:64174946-64174965 None:intergenic 10.0%
!! AAAAGGAAAAAAAAAAAAAA+TGG - chr1_4:64174947-64174966 None:intergenic 10.0%
!!! TTTAAAATTTCTAATAGTAA+TGG + chr1_4:64174986-64175005 Msa0177280:intron 10.0%
!!! AAAACTCTTTTTATTTTATT+TGG + chr1_4:64175081-64175100 Msa0177280:intron 10.0%
!!! TTTTATAGTAATTTTATGAT+AGG + chr1_4:64175108-64175127 Msa0177280:intron 10.0%
!!! GTTTTTTTTTTTTTTTACAA+AGG + chr1_4:64176713-64176732 Msa0177280:intron 10.0%
!!! TTTATTTTATCATAAACAAA+GGG + chr1_4:64176768-64176787 Msa0177280:intron 10.0%
!! TCACTTAATATATTAAATAA+TGG - chr1_4:64176840-64176859 None:intergenic 10.0%
!! TTTATTCATTATTTGTAAAT+TGG + chr1_4:64177048-64177067 Msa0177280:intron 10.0%
!! TTATTCATTATTTGTAAATT+GGG + chr1_4:64177049-64177068 Msa0177280:intron 10.0%
!! AAATTGGAAATTAAAAAAAC+CGG + chr1_4:64174646-64174665 Msa0177280:five_prime_UTR 15.0%
!!! AGAATATTTCTAATTTGAAA+AGG - chr1_4:64174964-64174983 None:intergenic 15.0%
!! ATATTTGTATTTCAAAAGTA+AGG - chr1_4:64175567-64175586 None:intergenic 15.0%
!!! TTGAAATACAAATATTTTCA+TGG + chr1_4:64175572-64175591 Msa0177280:intron 15.0%
!! TTCATCATTGAAATAAAAAA+TGG + chr1_4:64175787-64175806 Msa0177280:intron 15.0%
!!! AAATTATGATGCTTTTATTT+AGG + chr1_4:64176113-64176132 Msa0177280:intron 15.0%
!!! ATATTTTATATTTCATACAG+TGG + chr1_4:64176683-64176702 Msa0177280:intron 15.0%
!! TTGTTTATGATAAAATAAAG+TGG - chr1_4:64176767-64176786 None:intergenic 15.0%
!!! CTTTATTTTATCATAAACAA+AGG + chr1_4:64176767-64176786 Msa0177280:intron 15.0%
!!! ATAATGGAAATTTATTGTAA+GGG - chr1_4:64176824-64176843 None:intergenic 15.0%
!!! AATAATGGAAATTTATTGTA+AGG - chr1_4:64176825-64176844 None:intergenic 15.0%
!!! GTGATAATGTATTTAATATA+TGG + chr1_4:64177391-64177410 Msa0177280:three_prime_UTR 15.0%
!!! TCATAATTTTCAATTTCTTC+AGG + chr1_4:64174619-64174638 Msa0177280:five_prime_UTR 20.0%
!!! CATAATTTTCAATTTCTTCA+GGG + chr1_4:64174620-64174639 Msa0177280:five_prime_UTR 20.0%
!!! ATTTTATGATAGGATAATTG+AGG + chr1_4:64175118-64175137 Msa0177280:intron 20.0%
!!! TCAATCTAAATTTGAAGTTT+TGG - chr1_4:64175383-64175402 None:intergenic 20.0%
!! GAAATGAGAAATTAGAATAT+TGG - chr1_4:64175486-64175505 None:intergenic 20.0%
!!! AATTTTTTTTAGTGCAAAGT+CGG + chr1_4:64176419-64176438 Msa0177280:intron 20.0%
!! TGAAAATTCAAAATAAGAGA+TGG - chr1_4:64177287-64177306 None:intergenic 20.0%
!!! CTTATTTTGAATTTTCATGA+TGG + chr1_4:64177290-64177309 Msa0177280:three_prime_UTR 20.0%
!!! TAAGGGTTTTGTAGAATTAA+AGG + chr1_4:64174719-64174738 Msa0177280:five_prime_UTR 25.0%
!!! GCTTAACATTTTGTTTCTAA+AGG + chr1_4:64175355-64175374 Msa0177280:intron 25.0%
! TGTATTTCAAAAGTAAGGTT+CGG - chr1_4:64175562-64175581 None:intergenic 25.0%
!! TACAAATATTTTCATGGAGA+TGG + chr1_4:64175578-64175597 Msa0177280:intron 25.0%
! TATTGTATGTTAGTTGTTCA+TGG + chr1_4:64175621-64175640 Msa0177280:intron 25.0%
! CTAAGATTACAAACACAAAT+AGG + chr1_4:64175844-64175863 Msa0177280:intron 25.0%
!! TCTGAAAACTATGTTGTTTA+TGG + chr1_4:64176016-64176035 Msa0177280:intron 25.0%
!! CTGAAAACTATGTTGTTTAT+GGG + chr1_4:64176017-64176036 Msa0177280:intron 25.0%
! ACTCATTTAAAAAACGTTCA+TGG - chr1_4:64176899-64176918 None:intergenic 25.0%
!!! ATGAACGTTTTTTAAATGAG+TGG + chr1_4:64176898-64176917 Msa0177280:intron 25.0%
!!! ACTTTTGGAACTTTAATGTA+AGG - chr1_4:64177162-64177181 None:intergenic 25.0%
! TTAAAGAACCAAGAAATTCA+AGG - chr1_4:64177258-64177277 None:intergenic 25.0%
AATTTCTTCAGGGACTAAAT+TGG + chr1_4:64174630-64174649 Msa0177280:five_prime_UTR 30.0%
!! TTAACACGTTGTTTTATCAC+CGG - chr1_4:64174668-64174687 Msa0177270:five_prime_UTR 30.0%
!!! TTTTGAGATTGAGATTGAGA+GGG + chr1_4:64174695-64174714 Msa0177280:five_prime_UTR 30.0%
TAGAATTAAAGGAAGATGAG+TGG + chr1_4:64174730-64174749 Msa0177280:exon 30.0%
! GACAATGATGATAACGATAA+TGG - chr1_4:64174781-64174800 None:intergenic 30.0%
! AACAACTTGTGTTGGATTTT+CGG - chr1_4:64174808-64174827 None:intergenic 30.0%
! TTATTCCAGGTTGAAGAATT+TGG + chr1_4:64175018-64175037 Msa0177280:intron 30.0%
!!! TATTTTAACAAACAGGTGGT+GGG - chr1_4:64175168-64175187 None:intergenic 30.0%
ATGCAACACAATATCAAACA+TGG - chr1_4:64175305-64175324 None:intergenic 30.0%
!! TTTAGATTGATTTGTGTGTC+AGG + chr1_4:64175393-64175412 Msa0177280:intron 30.0%
!! CTCATTTCATATCCTTGTTT+TGG + chr1_4:64175498-64175517 Msa0177280:intron 30.0%
ATTAGAGAAACTCCAAAACA+AGG - chr1_4:64175513-64175532 None:intergenic 30.0%
TATGTTAGTTGTTCATGGTT+TGG + chr1_4:64175626-64175645 Msa0177280:intron 30.0%
! TAGTTCAGTTCATACTTTTC+TGG - chr1_4:64175686-64175705 None:intergenic 30.0%
ATTGCTACATGCTAAACAAA+AGG - chr1_4:64175755-64175774 None:intergenic 30.0%
ATGAGAATCATAAGGTTGAA+AGG - chr1_4:64175819-64175838 None:intergenic 30.0%
TAGTCACTATGAGAATCATA+AGG - chr1_4:64175827-64175846 None:intergenic 30.0%
GTTTATTAACTCTTACACGT+AGG + chr1_4:64175930-64175949 Msa0177280:intron 30.0%
TAAACTATCAGTTATCTCAC+AGG - chr1_4:64176269-64176288 None:intergenic 30.0%
! TGTTTTCAGTTCATGAATGA+AGG - chr1_4:64176513-64176532 None:intergenic 30.0%
CGAGAAGAAAGCAAATAATA+TGG - chr1_4:64176619-64176638 None:intergenic 30.0%
! TACAAAGGAGCAAATTTTCT+AGG + chr1_4:64176728-64176747 Msa0177280:intron 30.0%
! ACAAAGGAGCAAATTTTCTA+GGG + chr1_4:64176729-64176748 Msa0177280:intron 30.0%
ATCATAAACAAAGGGAAGAA+AGG + chr1_4:64176776-64176795 Msa0177280:intron 30.0%
ACGTTCATGGAATTAAAATC+AGG - chr1_4:64176886-64176905 None:intergenic 30.0%
AAATGAGTGGTAGAAAACAT+TGG + chr1_4:64176911-64176930 Msa0177280:intron 30.0%
! AGTCTTCATGAGTTTCTTTT+AGG - chr1_4:64177224-64177243 None:intergenic 30.0%
ATCTTGTACCTTGAATTTCT+TGG + chr1_4:64177247-64177266 Msa0177280:three_prime_UTR 30.0%
!! GAATTTTCATGATGGAAATC+AGG + chr1_4:64177298-64177317 Msa0177280:three_prime_UTR 30.0%
!!! GTTTTGAGATTGAGATTGAG+AGG + chr1_4:64174694-64174713 Msa0177280:five_prime_UTR 35.0%
ATTGAGATTGAGAGGGATAA+GGG + chr1_4:64174702-64174721 Msa0177280:five_prime_UTR 35.0%
GAAACTGTAACAACTTGTGT+TGG - chr1_4:64174816-64174835 None:intergenic 35.0%
ACAAGTTGTTACAGTTTCGT+AGG + chr1_4:64174818-64174837 Msa0177280:CDS 35.0%
TTTGCCAAATGAGACACATT+CGG - chr1_4:64174886-64174905 None:intergenic 35.0%
AAATGGGAATAACCTCAGTT+GGG - chr1_4:64174930-64174949 None:intergenic 35.0%
AAAATGGGAATAACCTCAGT+TGG - chr1_4:64174931-64174950 None:intergenic 35.0%
ATGGTGATTCATGTTATTCC+AGG + chr1_4:64175005-64175024 Msa0177280:intron 35.0%
ATTTGGTCCTAAAATTCAGC+AGG + chr1_4:64175035-64175054 Msa0177280:CDS 35.0%
!!! GTATTTTAACAAACAGGTGG+TGG - chr1_4:64175169-64175188 None:intergenic 35.0%
!!! GAAGGGGTATTTTAACAAAC+AGG - chr1_4:64175175-64175194 None:intergenic 35.0%
! GAATCCAGTGTTGGAATAAA+AGG - chr1_4:64175204-64175223 None:intergenic 35.0%
AAACAACATGAATCCAGTGT+TGG - chr1_4:64175213-64175232 None:intergenic 35.0%
AACACTGGATTCATGTTGTT+TGG + chr1_4:64175212-64175231 Msa0177280:intron 35.0%
! ACACTGGATTCATGTTGTTT+GGG + chr1_4:64175213-64175232 Msa0177280:intron 35.0%
ACATCCATGCTAACAAACAT+TGG - chr1_4:64175240-64175259 None:intergenic 35.0%
!! ATTGATTTGTGTGTCAGGTT+TGG + chr1_4:64175398-64175417 Msa0177280:intron 35.0%
!!! TTTTCTGGTTCAGTTTCGTT+CGG - chr1_4:64175671-64175690 None:intergenic 35.0%
GTTTGTGACATTCCAGATTT+AGG + chr1_4:64176075-64176094 Msa0177280:intron 35.0%
CGAACACTAAATCCTAAATC+TGG - chr1_4:64176090-64176109 None:intergenic 35.0%
TTGGTGCAAATTGTTCTTTC+CGG + chr1_4:64176328-64176347 Msa0177280:intron 35.0%
TTGTGCTGAACTGTACAAAA+TGG + chr1_4:64176393-64176412 Msa0177280:intron 35.0%
AACAAAGGGAAGAAAGGAAT+AGG + chr1_4:64176782-64176801 Msa0177280:intron 35.0%
ACAAAGGGAAGAAAGGAATA+GGG + chr1_4:64176783-64176802 Msa0177280:intron 35.0%
! TAGAAAACATTGGTGCTTGT+TGG + chr1_4:64176921-64176940 Msa0177280:intron 35.0%
CACCTGAAACATTTGATCAA+CGG + chr1_4:64177018-64177037 Msa0177280:CDS 35.0%
ATAGATTGCTATCCTTGACA+GGG + chr1_4:64177101-64177120 Msa0177280:intron 35.0%
AGTTCCAAAAGTCCTAAATG+TGG + chr1_4:64177170-64177189 Msa0177280:CDS 35.0%
!! TAGTCCACATTTAGGACTTT+TGG - chr1_4:64177177-64177196 None:intergenic 35.0%
! ATGATGGAAATCAGGTCATA+TGG + chr1_4:64177306-64177325 Msa0177280:three_prime_UTR 35.0%
GATTGAGATTGAGAGGGATA+AGG + chr1_4:64174701-64174720 Msa0177280:five_prime_UTR 40.0%
AATGGGAATAACCTCAGTTG+GGG - chr1_4:64174929-64174948 None:intergenic 40.0%
TAGGACCAAATTCTTCAACC+TGG - chr1_4:64175026-64175045 None:intergenic 40.0%
! CCTATCACCTGCTGAATTTT+AGG - chr1_4:64175045-64175064 None:intergenic 40.0%
CCTAAAATTCAGCAGGTGAT+AGG + chr1_4:64175042-64175061 Msa0177280:CDS 40.0%
GGATAATTGAGGAACAACAC+TGG + chr1_4:64175129-64175148 Msa0177280:intron 40.0%
!!! GGGGTATTTTAACAAACAGG+TGG - chr1_4:64175172-64175191 None:intergenic 40.0%
! CCAGTGTTGGAATAAAAGGT+GGG - chr1_4:64175200-64175219 None:intergenic 40.0%
! TCCAGTGTTGGAATAAAAGG+TGG - chr1_4:64175201-64175220 None:intergenic 40.0%
!! AGTTGTTCATGGTTTGGTTC+AGG + chr1_4:64175632-64175651 Msa0177280:intron 40.0%
GAGTTACTGACATGCTACAA+AGG - chr1_4:64176178-64176197 None:intergenic 40.0%
TATCAGTTATCTCACAGGTC+AGG - chr1_4:64176264-64176283 None:intergenic 40.0%
! TGCTCGATTCGTGAACTATT+TGG + chr1_4:64176309-64176328 Msa0177280:intron 40.0%
! TAGCAGTTCGGTTCAGATTT+TGG + chr1_4:64176449-64176468 Msa0177280:intron 40.0%
! AGCAGTTCGGTTCAGATTTT+GGG + chr1_4:64176450-64176469 Msa0177280:intron 40.0%
! TAACAGCCCTTGTTATGAGT+TGG + chr1_4:64176477-64176496 Msa0177280:intron 40.0%
AGCCTACCAACTCATAACAA+GGG - chr1_4:64176486-64176505 None:intergenic 40.0%
TGCTTTCCTATACTTCACCT+TGG + chr1_4:64176640-64176659 Msa0177280:intron 40.0%
GGAATTAAAATCAGGTGCAG+AGG - chr1_4:64176878-64176897 None:intergenic 40.0%
CACCGTTGATCAAATGTTTC+AGG - chr1_4:64177023-64177042 None:intergenic 40.0%
GTCAAGGATAGCAATCTATC+AGG - chr1_4:64177100-64177119 None:intergenic 40.0%
GATAGATTGCTATCCTTGAC+AGG + chr1_4:64177100-64177119 Msa0177280:intron 40.0%
! CATAGTTTGGAATAGAAGCG+AGG - chr1_4:64177134-64177153 None:intergenic 40.0%
CGCTTCTATTCCAAACTATG+AGG + chr1_4:64177134-64177153 Msa0177280:CDS 40.0%
ATGTAAGGCTCCTCATAGTT+TGG - chr1_4:64177147-64177166 None:intergenic 40.0%
AGCAACTCTAGTCCACATTT+AGG - chr1_4:64177185-64177204 None:intergenic 40.0%
!! GGCAAAGTGTTGTTACTCAG+AGG + chr1_4:64174751-64174770 Msa0177280:CDS 45.0%
ACCTCCGAATGTGTCTCATT+TGG + chr1_4:64174879-64174898 Msa0177280:CDS 45.0%
TATCTCTCTTACCCCAACTG+AGG + chr1_4:64174915-64174934 Msa0177280:CDS 45.0%
AAATTCAGCAGGTGATAGGC+TGG + chr1_4:64175046-64175065 Msa0177280:CDS 45.0%
GAATAAAAGGTGGGTGGAAG+GGG - chr1_4:64175191-64175210 None:intergenic 45.0%
GGAATAAAAGGTGGGTGGAA+GGG - chr1_4:64175192-64175211 None:intergenic 45.0%
TGGAATAAAAGGTGGGTGGA+AGG - chr1_4:64175193-64175212 None:intergenic 45.0%
GTGTTGGAATAAAAGGTGGG+TGG - chr1_4:64175197-64175216 None:intergenic 45.0%
! CCCACCTTTTATTCCAACAC+TGG + chr1_4:64175197-64175216 Msa0177280:intron 45.0%
! GGGTCCAATGTTTGTTAGCA+TGG + chr1_4:64175233-64175252 Msa0177280:intron 45.0%
!! TTTGAGAGCACCTGCTCTTA+TGG - chr1_4:64175462-64175481 None:intergenic 45.0%
! TCTGGAATGTCACAAACCTG+CGG - chr1_4:64176072-64176091 None:intergenic 45.0%
TTGTTCTTTCCGGTGCAGTT+TGG + chr1_4:64176338-64176357 Msa0177280:intron 45.0%
CAGTTCAGCACAAACTGAAC+TGG - chr1_4:64176386-64176405 None:intergenic 45.0%
! GTCGGTTCAGTTTAGCAGTT+CGG + chr1_4:64176437-64176456 Msa0177280:intron 45.0%
!! AGCCCTTGTTATGAGTTGGT+AGG + chr1_4:64176481-64176500 Msa0177280:intron 45.0%
CAGCCTACCAACTCATAACA+AGG - chr1_4:64176487-64176506 None:intergenic 45.0%
GAAACAAACTTGCACGACCA+AGG - chr1_4:64176660-64176679 None:intergenic 45.0%
! AACATTGGTGCTTGTTGGCT+TGG + chr1_4:64176926-64176945 Msa0177280:intron 45.0%
CATATTGCGTAGCCAACTGA+CGG + chr1_4:64177072-64177091 Msa0177280:intron 45.0%
! GTTTGGAATAGAAGCGAGGA+TGG - chr1_4:64177130-64177149 None:intergenic 45.0%
TCCTGCTGAGACTTTCTTCA+AGG + chr1_4:64177443-64177462 Msa0177280:three_prime_UTR 45.0%
ACCTTGAAGAAAGTCTCAGC+AGG - chr1_4:64177447-64177466 None:intergenic 45.0%
!!! AATATAATATTTTTTTATCT+AGG + chr1_4:64176201-64176220 Msa0177280:intron 5.0%
CACATTCGGAGGTTCAAGAG+AGG - chr1_4:64174872-64174891 None:intergenic 50.0%
GCCAAATGAGACACATTCGG+AGG - chr1_4:64174883-64174902 None:intergenic 50.0%
TCGAAATGTGACAGCTCACG+AGG + chr1_4:64175333-64175352 Msa0177280:intron 50.0%
TTATGGAGGGCTCAACGCTT+TGG - chr1_4:64175445-64175464 None:intergenic 50.0%
! AGAGCACCTGCTCTTATGGA+GGG - chr1_4:64175458-64175477 None:intergenic 50.0%
GTTCGCTAACCAAACTGCAC+CGG - chr1_4:64176350-64176369 None:intergenic 50.0%
GCACGACCAAGGTGAAGTAT+AGG - chr1_4:64176649-64176668 None:intergenic 50.0%
! ATCTATCAGGCACCGTCAGT+TGG - chr1_4:64177087-64177106 None:intergenic 50.0%
TGTCAGGTTTGGACAGCTGC+AGG + chr1_4:64175409-64175428 Msa0177280:intron 55.0%
GTCAGGTTTGGACAGCTGCA+GGG + chr1_4:64175410-64175429 Msa0177280:intron 55.0%
GTTGAGCCCTCCATAAGAGC+AGG + chr1_4:64175449-64175468 Msa0177280:CDS 55.0%
!! GAGAGCACCTGCTCTTATGG+AGG - chr1_4:64175459-64175478 None:intergenic 55.0%
!! TTCCATGTCTGAAGCACCGC+AGG + chr1_4:64176053-64176072 Msa0177280:intron 55.0%
AACCTGCGGTGCTTCAGACA+TGG - chr1_4:64176058-64176077 None:intergenic 55.0%
! ATCAGGTGCAGAGGCATGTC+AGG - chr1_4:64176869-64176888 None:intergenic 55.0%
CGAGGATGGTATCCCTGTCA+AGG - chr1_4:64177116-64177135 None:intergenic 55.0%
TGGAGGGCTCAACGCTTTGG+AGG - chr1_4:64175442-64175461 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 64174598 64177472 64174598 ID=Msa0177280;Name=Msa0177280
chr1_4 mRNA 64174598 64177472 64174598 ID=Msa0177280-mRNA-1;Parent=Msa0177280;Name=Msa0177280-mRNA-1;_AED=0.11;_eAED=0.11;_QI=147|1|1|1|1|1|5|275|137
chr1_4 exon 64174598 64174936 64174598 ID=Msa0177280-mRNA-1:exon:20825;Parent=Msa0177280-mRNA-1
chr1_4 exon 64175027 64175067 64175027 ID=Msa0177280-mRNA-1:exon:20826;Parent=Msa0177280-mRNA-1
chr1_4 exon 64175415 64175470 64175415 ID=Msa0177280-mRNA-1:exon:20827;Parent=Msa0177280-mRNA-1
chr1_4 exon 64176991 64177039 64176991 ID=Msa0177280-mRNA-1:exon:20828;Parent=Msa0177280-mRNA-1
chr1_4 exon 64177122 64177472 64177122 ID=Msa0177280-mRNA-1:exon:20829;Parent=Msa0177280-mRNA-1
chr1_4 five_prime_UTR 64174598 64174744 64174598 ID=Msa0177280-mRNA-1:five_prime_utr;Parent=Msa0177280-mRNA-1
chr1_4 CDS 64174745 64174936 64174745 ID=Msa0177280-mRNA-1:cds;Parent=Msa0177280-mRNA-1
chr1_4 CDS 64175027 64175067 64175027 ID=Msa0177280-mRNA-1:cds;Parent=Msa0177280-mRNA-1
chr1_4 CDS 64175415 64175470 64175415 ID=Msa0177280-mRNA-1:cds;Parent=Msa0177280-mRNA-1
chr1_4 CDS 64176991 64177039 64176991 ID=Msa0177280-mRNA-1:cds;Parent=Msa0177280-mRNA-1
chr1_4 CDS 64177122 64177197 64177122 ID=Msa0177280-mRNA-1:cds;Parent=Msa0177280-mRNA-1
chr1_4 three_prime_UTR 64177198 64177472 64177198 ID=Msa0177280-mRNA-1:three_prime_utr;Parent=Msa0177280-mRNA-1
Gene Sequence

>Msa0177280

ATGAGTGGCAAAGTGTTGTTACTCAGAGGAACACCATTATCGTTATCATCATTGTCGAATCCGAAAATCCAACACAAGTTGTTACAGTTTCGTAGGTTGTCTTCAAAAAAAACTAATTGTTGTTCCTCTCTTGAACCTCCGAATGTGTCTCATTTGGCAAAAACAGCTCATATCTCTCTTACCCCAACTGAGGTTGAAGAATTTGGTCCTAAAATTCAGCAGGTGATAGGCTGGTTTGGACAGCTGCAGGGTGTTGACCTCCAAAGCGTTGAGCCCTCCATAAGAGCAGATACTGAAAACAATTTGCGTGACAATACACCTGAAACATTTGATCAACGGGATACCATCCTCGCTTCTATTCCAAACTATGAGGAGCCTTACATTAAAGTTCCAAAAGTCCTAAATGTGGACTAG

Protein sequence

>Msa0177280

MSGKVLLLRGTPLSLSSLSNPKIQHKLLQFRRLSSKKTNCCSSLEPPNVSHLAKTAHISLTPTEVEEFGPKIQQVIGWFGQLQGVDLQSVEPSIRADTENNLRDNTPETFDQRDTILASIPNYEEPYIKVPKVLNVD*