AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0733110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0733110 MtrunA17_Chr5g0428201 98.895 543 5 1 1 543 1 542 0.0 1102
Msa0733110 MtrunA17_Chr3g0141051 80.185 540 95 4 1 540 1 528 0.0 885
Msa0733110 MtrunA17_Chr4g0049411 70.236 467 137 2 74 540 62 526 0.0 657
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0733110 AT1G58290.1 76.051 547 119 6 1 541 1 541 0.0 791
Msa0733110 AT1G09940.1 71.612 546 134 7 1 541 1 530 0.0 768
Msa0733110 AT2G31250.1 64.606 469 151 7 78 541 66 524 0.0 584

Find 123 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAAATCCTTACCCTTAA+AGG 0.092802 5_1:-46092706 Msa0733110:three_prime_UTR
GATTCTTTCTCAAGCCTTTA+AGG 0.101786 5_1:+46092692 None:intergenic
TGAGAAATGTTTAGGTAAAA+TGG 0.148078 5_1:-46093018 Msa0733110:CDS
TTCCTACCATTAAGAAATTA+AGG 0.158017 5_1:-46093073 Msa0733110:CDS
AAGAAGAAGAACAACATTTA+AGG 0.190377 5_1:+46095305 None:intergenic
ACGCAATCACCGTCGGTAAA+AGG 0.192964 5_1:-46093691 Msa0733110:CDS
TGAAACTGAGGTTTCTGTTT+TGG 0.219895 5_1:-46092826 Msa0733110:CDS
TTCAATCGGAATTAGTAAAT+TGG 0.222150 5_1:-46092507 Msa0733110:three_prime_UTR
TGCTTCATCTTCTGATGTTT+TGG 0.224474 5_1:-46095185 Msa0733110:CDS
GGGCTTATGCTGAAAGATTA+AGG 0.231515 5_1:-46093052 Msa0733110:CDS
ATAAGCCCTTAATTTCTTAA+TGG 0.241696 5_1:+46093067 None:intergenic
TAGTTTCTATGGTGCTAAAT+TGG 0.244077 5_1:-46095338 Msa0733110:CDS
ACACATGAACCTACGTTTCT+AGG 0.249945 5_1:+46093254 None:intergenic
TTAGGCTCTATTTATGAGTT+TGG 0.261273 5_1:+46092544 None:intergenic
GACAATAATAATAGTAAGTT+TGG 0.274166 5_1:+46095392 None:intergenic
ACTGCTCATTTATCATTCTT+TGG 0.279400 5_1:-46095256 Msa0733110:CDS
TTTATGTTTGTGTATGGTTT+TGG 0.292770 5_1:+46095441 None:intergenic
TGAAAGAGGCACACACATTT+AGG 0.297746 5_1:+46092526 None:intergenic
GCTGTTTCAACTAGTTTCTA+TGG 0.301919 5_1:-46095349 Msa0733110:CDS
TCTTAGCCTGTCCTCTTTGT+TGG 0.319230 5_1:+46093172 None:intergenic
AGTTATTGGAGCTGGCAAAA+TGG 0.324891 5_1:-46093555 Msa0733110:CDS
TCCTTTAGCAAGCGAAGAAA+TGG 0.328100 5_1:-46093309 Msa0733110:CDS
ATATATCTCCATTCGGTTGC+AGG 0.334402 5_1:+46094416 None:intergenic
GCTGAGCTTGAGAAATGTTT+AGG 0.335012 5_1:-46093026 Msa0733110:CDS
GTTATTGGAGCTGGCAAAAT+GGG 0.335933 5_1:-46093554 Msa0733110:CDS
AAAGCAGGACAAGGAGTTAA+TGG 0.352248 5_1:-46093746 Msa0733110:CDS
ATTCTTTCTCAAGCCTTTAA+GGG 0.368639 5_1:+46092693 None:intergenic
GATAATTTACAAACCCCTTT+CGG 0.370528 5_1:-46093423 Msa0733110:CDS
TCCTACCATTAAGAAATTAA+GGG 0.373626 5_1:-46093072 Msa0733110:CDS
GAGAAATGTTTAGGTAAAAT+GGG 0.376514 5_1:-46093017 Msa0733110:CDS
AATGCAAGAATGCTAGTTAT+TGG 0.382486 5_1:-46093569 Msa0733110:CDS
CAACATCATTTATTTCTTCA+CGG 0.384102 5_1:+46093447 None:intergenic
CGATGATCTTGAGTCTGTTA+AGG 0.386630 5_1:-46093231 Msa0733110:CDS
GGTCTTGATTCTCTTGTAAT+GGG 0.391946 5_1:-46093806 Msa0733110:CDS
GCTCTAGGCCATTCTGCTTC+CGG 0.393662 5_1:+46094492 None:intergenic
GACCTGCTGATACTTCAAAA+AGG 0.396196 5_1:+46093825 None:intergenic
GGCTTATGCTGAAAGATTAA+GGG 0.398014 5_1:-46093051 Msa0733110:CDS
GGACAAGGAGTTAATGGCTT+TGG 0.405221 5_1:-46093740 Msa0733110:CDS
AGGTCTTGATTCTCTTGTAA+TGG 0.410658 5_1:-46093807 Msa0733110:CDS
TTCTCAAGCCTTTAAGGGTA+AGG 0.416845 5_1:+46092698 None:intergenic
AGGAGCAGCATTGTCGTTAT+CGG 0.419642 5_1:-46094564 Msa0733110:CDS
ATCAAACATTTGGTTGCAAA+AGG 0.420709 5_1:-46093521 Msa0733110:CDS
GGTGATCATCGGCGAAGAAT+CGG 0.423290 5_1:-46093132 Msa0733110:CDS
GAAGCTTGTGATCAAACATT+TGG 0.426546 5_1:-46093531 Msa0733110:CDS
CTGTGGATGATCTTAGTAAA+GGG 0.435856 5_1:-46092965 Msa0733110:CDS
TCGGAAATGCTCGAATGTAT+TGG 0.438087 5_1:-46093404 Msa0733110:CDS
CCCATTTCTTCGCTTGCTAA+AGG 0.439472 5_1:+46093308 None:intergenic
GTGTATATTGTACAAAATAG+AGG 0.440797 5_1:-46092578 Msa0733110:three_prime_UTR
CGCAATCACCGTCGGTAAAA+GGG 0.440824 5_1:-46093690 Msa0733110:CDS
ACTATGTTTATGTTTGTGTA+TGG 0.451118 5_1:+46095435 None:intergenic
AATCGGGACAATTTGAAGCT+TGG 0.456577 5_1:-46093115 Msa0733110:CDS
TTACTAATTCCGATTGAAAG+AGG 0.457239 5_1:+46092512 None:intergenic
GTGATCATCGGCGAAGAATC+GGG 0.471676 5_1:-46093131 Msa0733110:CDS
GGCTCTATTTATGAGTTTGG+AGG 0.474943 5_1:+46092547 None:intergenic
GGAGCAGAAGATTAGAGCTA+AGG 0.475137 5_1:-46092805 Msa0733110:CDS
ATTGTGAATAAAATGCTTCA+TGG 0.475489 5_1:-46092942 Msa0733110:CDS
CAATGTTGATGATCTTAAAG+AGG 0.478016 5_1:-46093204 Msa0733110:CDS
AGTGTGATAATCAATGAAAA+TGG 0.478665 5_1:+46092749 None:intergenic
AATTGGTTCAACACAATTGT+GGG 0.479202 5_1:-46092490 Msa0733110:three_prime_UTR
ATGTGTGTGCCTCTTTCAAT+CGG 0.487399 5_1:-46092521 Msa0733110:three_prime_UTR
ACATTCGAGCATTTCCGAAA+GGG 0.488912 5_1:+46093409 None:intergenic
GGAGCAGCATTGTCGTTATC+GGG 0.504375 5_1:-46094563 Msa0733110:CDS
CAAAGCTCACCAATGGCTCT+AGG 0.509555 5_1:+46094477 None:intergenic
CCTTTAGCAAGCGAAGAAAT+GGG 0.509769 5_1:-46093308 Msa0733110:CDS
GCTGTGGATGATCTTAGTAA+AGG 0.511697 5_1:-46092966 Msa0733110:CDS
AAATTGGTTCAACACAATTG+TGG 0.514071 5_1:-46092491 Msa0733110:three_prime_UTR
GCAGAATGGCCTAGAGCCAT+TGG 0.516082 5_1:-46094486 Msa0733110:CDS
AGGCCATTCTGCTTCCGGTA+TGG 0.518453 5_1:+46094497 None:intergenic
GATTCTCTTGTAATGGGAGA+AGG 0.520460 5_1:-46093800 Msa0733110:CDS
TACTTTGACAGCTCTGATGC+AGG 0.523941 5_1:+46093884 None:intergenic
CATTCTTGCATTGCCATGTG+AGG 0.524732 5_1:+46093580 None:intergenic
TAAATGAGCAGTAACATAAG+AGG 0.525788 5_1:+46095267 None:intergenic
TTGCCATGTGAGGCTTGATC+AGG 0.526089 5_1:+46093590 None:intergenic
AAGAACTTTGTTCAAAGCAG+AGG 0.528512 5_1:-46095223 Msa0733110:CDS
TCACATCTCAAATGTTGCAT+TGG 0.531540 5_1:+46092918 None:intergenic
GTAGTTGTTAATCGAACTGA+AGG 0.532592 5_1:-46093485 Msa0733110:CDS
CGACAACATATATCTCCATT+CGG 0.533183 5_1:+46094409 None:intergenic
CCGCAATGTTAGTCTCAGTT+CGG 0.534498 5_1:+46093666 None:intergenic
TGGTGCAGTTTCTGTTAGCT+CGG 0.542119 5_1:-46093642 Msa0733110:CDS
CAACTTGTTTGACTTGTGCA+AGG 0.546113 5_1:+46093771 None:intergenic
CATTCGAGCATTTCCGAAAG+GGG 0.550182 5_1:+46093410 None:intergenic
AAGAAAAGCAATGGAAGCAC+AGG 0.550420 5_1:-46093153 Msa0733110:CDS
GCAGAAGATTAGAGCTAAGG+TGG 0.550559 5_1:-46092802 Msa0733110:CDS
GTCAAACAAGTTGTGAAAGC+AGG 0.553805 5_1:-46093761 Msa0733110:CDS
ATGCAACATTTGAGATGTGA+TGG 0.556625 5_1:-46092915 Msa0733110:CDS
TCAAACATTTGGTTGCAAAA+GGG 0.561106 5_1:-46093520 Msa0733110:CDS
AGAATGCTAGTTATTGGAGC+TGG 0.568228 5_1:-46093563 Msa0733110:CDS
GCCCTTAATTTCTTAATGGT+AGG 0.568816 5_1:+46093071 None:intergenic
GTAAGTTTGGTATTGTCACT+TGG 0.568843 5_1:+46095405 None:intergenic
TGTACAAAATAGAGGAGTTG+TGG 0.577839 5_1:-46092570 Msa0733110:three_prime_UTR
ATGGAAGCACAGGTGATCAT+CGG 0.577892 5_1:-46093143 Msa0733110:CDS
TTGCCATACCGGAAGCAGAA+TGG 0.579207 5_1:-46094500 Msa0733110:CDS
AATGTTTAGTCTTGAAACTG+AGG 0.579905 5_1:-46092838 Msa0733110:CDS
CAAGTTGTGAAAGCAGGACA+AGG 0.580921 5_1:-46093755 Msa0733110:CDS
GGACAGGCTAAGAAAAGCAA+TGG 0.581200 5_1:-46093162 Msa0733110:CDS
TAGCTGCCAACAAAGAGGAC+AGG 0.583466 5_1:-46093178 Msa0733110:CDS
TACATTCGAGCATTTCCGAA+AGG 0.590437 5_1:+46093408 None:intergenic
GAACAACATTTAAGGAACAA+AGG 0.591907 5_1:+46095313 None:intergenic
CAACAGGATATACAAAGGAA+AGG 0.593342 5_1:-46094584 Msa0733110:intron
TCTGAGCACCTGCAACCGAA+TGG 0.595913 5_1:-46094424 Msa0733110:CDS
TTGATCAGGTAACTTCATCA+AGG 0.596661 5_1:+46093604 None:intergenic
GTGTCAAAGAAGTCACTGAA+TGG 0.597620 5_1:-46094368 Msa0733110:CDS
ATTTCTGTTCCTAGAAACGT+AGG 0.599065 5_1:-46093263 Msa0733110:CDS
ACTGAGACTAACATTGCGGC+TGG 0.602580 5_1:-46093662 Msa0733110:CDS
GATGTGATGGGAGTGATAGT+AGG 0.608822 5_1:-46092902 Msa0733110:CDS
TTCAAGCACGCAATCACCGT+CGG 0.609589 5_1:-46093698 Msa0733110:CDS
CAGTGACTTCTTTGACACCA+CGG 0.610814 5_1:+46094373 None:intergenic
GTGTTATATTAATCTTACTG+TGG 0.613158 5_1:+46092771 None:intergenic
TTACCTGATCAAGCCTCACA+TGG 0.622088 5_1:-46093593 Msa0733110:CDS
CAGATTACAAAGCTCACCAA+TGG 0.622987 5_1:+46094470 None:intergenic
TAGCAAGCGAAGAAATGGGA+GGG 0.637799 5_1:-46093304 Msa0733110:CDS
TTATTGGAGCTGGCAAAATG+GGG 0.640758 5_1:-46093553 Msa0733110:CDS
ACAGATTTAGCATTATCACT+AGG 0.641571 5_1:+46095157 None:intergenic
TCTAAGTACACTAATTACAA+TGG 0.646392 5_1:-46095371 Msa0733110:exon
GAACAGAAATATCAACGAAG+AGG 0.651799 5_1:+46093276 None:intergenic
GGTTGTAGCTGCCAACAAAG+AGG 0.663936 5_1:-46093183 Msa0733110:CDS
GGCTTTGGTAGAAACATCAG+TGG 0.667204 5_1:-46093725 Msa0733110:CDS
TGCAACATTTGAGATGTGAT+GGG 0.668284 5_1:-46092914 Msa0733110:CDS
GCTTTCAACAGGATATACAA+AGG 0.679814 5_1:-46094589 Msa0733110:intron
TTAGCAAGCGAAGAAATGGG+AGG 0.688497 5_1:-46093305 Msa0733110:CDS
GTCGCACTTTCTCAGCACCG+TGG 0.705085 5_1:-46094390 Msa0733110:CDS
TAGTTGTTAATCGAACTGAA+GGG 0.734798 5_1:-46093484 Msa0733110:CDS
CCGAACTGAGACTAACATTG+CGG 0.747883 5_1:-46093666 Msa0733110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAGTTAATAATGAA+TGG - chr5_1:46092848-46092867 Msa0733110:CDS 10.0%
!!! TTTTTTTATAATAATTTGGT+TGG - chr5_1:46092923-46092942 Msa0733110:CDS 10.0%
!!! TAAATATCTACATATATTTT+TGG - chr5_1:46093631-46093650 Msa0733110:CDS 10.0%
!! AACTAAAAAAACATTCAAAT+AGG + chr5_1:46092839-46092858 None:intergenic 15.0%
!! TGAAATTAACTTTATGAAAA+TGG - chr5_1:46093315-46093334 Msa0733110:CDS 15.0%
!! GACAATAATAATAGTAAGTT+TGG + chr5_1:46092537-46092556 None:intergenic 20.0%
!! TAATGAATGGTTCAATTATA+TGG - chr5_1:46092861-46092880 Msa0733110:CDS 20.0%
!! AATTATATGGTTAAGATTAG+TGG - chr5_1:46092874-46092893 Msa0733110:CDS 20.0%
!! GATGGTTAATGAATATAATA+AGG - chr5_1:46092986-46093005 Msa0733110:CDS 20.0%
!! AATTAAACACATGAAAGTTA+TGG - chr5_1:46093082-46093101 Msa0733110:CDS 20.0%
!!! CTATTCTATTTTCAACATAT+AGG + chr5_1:46093214-46093233 None:intergenic 20.0%
!! ATAGAAATAGATTATGCATT+AGG - chr5_1:46093770-46093789 Msa0733110:CDS 20.0%
!!! TCTATTGTATTGATACATAT+TGG - chr5_1:46093978-46093997 Msa0733110:intron 20.0%
!!! ACATTTTGTTTCAAAATCAA+AGG + chr5_1:46094588-46094607 None:intergenic 20.0%
!!! GATTTTGAAACAAAATGTTA+AGG - chr5_1:46094590-46094609 Msa0733110:intron 20.0%
!! TTTATGTTTGTGTATGGTTT+TGG + chr5_1:46092488-46092507 None:intergenic 25.0%
! ACTATGTTTATGTTTGTGTA+TGG + chr5_1:46092494-46092513 None:intergenic 25.0%
! TCTAAGTACACTAATTACAA+TGG - chr5_1:46092555-46092574 Msa0733110:three_prime_UTR 25.0%
! AAGAAGAAGAACAACATTTA+AGG + chr5_1:46092624-46092643 None:intergenic 25.0%
! TTAATTGTGTGTTTAGTAGA+TGG - chr5_1:46092968-46092987 Msa0733110:CDS 25.0%
!! GCAATTAATACAAGATTTTC+AGG - chr5_1:46093013-46093032 Msa0733110:CDS 25.0%
! TTACATTTGATCACAAATTG+TGG - chr5_1:46093037-46093056 Msa0733110:CDS 25.0%
! AGAATATACTTTCTCTGTAT+GGG - chr5_1:46093159-46093178 Msa0733110:CDS 25.0%
! ACTTATAGCTTATACGAAAA+CGG - chr5_1:46093723-46093742 Msa0733110:CDS 25.0%
! AAACAAATTGAGTGTATGTT+TGG + chr5_1:46093952-46093971 None:intergenic 25.0%
!!! TCTATTTTTGCTATACAACA+AGG - chr5_1:46094065-46094084 Msa0733110:intron 25.0%
!! CAACATCATTTATTTCTTCA+CGG + chr5_1:46094482-46094501 None:intergenic 25.0%
! TTCCTACCATTAAGAAATTA+AGG - chr5_1:46094853-46094872 Msa0733110:intron 25.0%
! TCCTACCATTAAGAAATTAA+GGG - chr5_1:46094854-46094873 Msa0733110:intron 25.0%
! ATAAGCCCTTAATTTCTTAA+TGG + chr5_1:46094862-46094881 None:intergenic 25.0%
! TGAGAAATGTTTAGGTAAAA+TGG - chr5_1:46094908-46094927 Msa0733110:intron 25.0%
! GAGAAATGTTTAGGTAAAAT+GGG - chr5_1:46094909-46094928 Msa0733110:intron 25.0%
! ATTGTGAATAAAATGCTTCA+TGG - chr5_1:46094984-46095003 Msa0733110:intron 25.0%
! GTGTTATATTAATCTTACTG+TGG + chr5_1:46095158-46095177 None:intergenic 25.0%
! AGTGTGATAATCAATGAAAA+TGG + chr5_1:46095180-46095199 None:intergenic 25.0%
! ATAACCAGAAAAACAAACTA+AGG + chr5_1:46095297-46095316 None:intergenic 25.0%
! GTGTATATTGTACAAAATAG+AGG - chr5_1:46095348-46095367 Msa0733110:CDS 25.0%
! TTCAATCGGAATTAGTAAAT+TGG - chr5_1:46095419-46095438 Msa0733110:five_prime_UTR 25.0%
! TAGTTTCTATGGTGCTAAAT+TGG - chr5_1:46092588-46092607 Msa0733110:three_prime_UTR 30.0%
GAACAACATTTAAGGAACAA+AGG + chr5_1:46092616-46092635 None:intergenic 30.0%
TAAATGAGCAGTAACATAAG+AGG + chr5_1:46092662-46092681 None:intergenic 30.0%
ACTGCTCATTTATCATTCTT+TGG - chr5_1:46092670-46092689 Msa0733110:three_prime_UTR 30.0%
ACAGATTTAGCATTATCACT+AGG + chr5_1:46092772-46092791 None:intergenic 30.0%
GTTAATGCAGTTTGTATACA+TGG - chr5_1:46092945-46092964 Msa0733110:CDS 30.0%
TGATCACAAATTGTGGTTAA+TGG - chr5_1:46093044-46093063 Msa0733110:CDS 30.0%
CTCAAATAAATTAACCATCC+AGG + chr5_1:46093141-46093160 None:intergenic 30.0%
GAGAATATACTTTCTCTGTA+TGG - chr5_1:46093158-46093177 Msa0733110:CDS 30.0%
TTATGAAAATGGCTTTCAAC+AGG - chr5_1:46093326-46093345 Msa0733110:CDS 30.0%
AGAAAAAAGTGAACCTACAT+TGG + chr5_1:46093588-46093607 None:intergenic 30.0%
AATGCAAGAATGCTAGTTAT+TGG - chr5_1:46094357-46094376 Msa0733110:intron 30.0%
ATCAAACATTTGGTTGCAAA+AGG - chr5_1:46094405-46094424 Msa0733110:CDS 30.0%
TCAAACATTTGGTTGCAAAA+GGG - chr5_1:46094406-46094425 Msa0733110:CDS 30.0%
TAGTTGTTAATCGAACTGAA+GGG - chr5_1:46094442-46094461 Msa0733110:CDS 30.0%
GATAATTTACAAACCCCTTT+CGG - chr5_1:46094503-46094522 Msa0733110:CDS 30.0%
!! CAATGTTGATGATCTTAAAG+AGG - chr5_1:46094722-46094741 Msa0733110:intron 30.0%
!! AATGTTTAGTCTTGAAACTG+AGG - chr5_1:46095088-46095107 Msa0733110:intron 30.0%
ATGAAAATCCTTACCCTTAA+AGG - chr5_1:46095220-46095239 Msa0733110:CDS 30.0%
ATTCTTTCTCAAGCCTTTAA+GGG + chr5_1:46095236-46095255 None:intergenic 30.0%
TTAGGCTCTATTTATGAGTT+TGG + chr5_1:46095385-46095404 None:intergenic 30.0%
TTACTAATTCCGATTGAAAG+AGG + chr5_1:46095417-46095436 None:intergenic 30.0%
! AAATTGGTTCAACACAATTG+TGG - chr5_1:46095435-46095454 Msa0733110:five_prime_UTR 30.0%
! AATTGGTTCAACACAATTGT+GGG - chr5_1:46095436-46095455 Msa0733110:five_prime_UTR 30.0%
!!! GTTTGTGTATGGTTTTGGTT+TGG + chr5_1:46092483-46092502 None:intergenic 35.0%
GTAAGTTTGGTATTGTCACT+TGG + chr5_1:46092524-46092543 None:intergenic 35.0%
! GCTGTTTCAACTAGTTTCTA+TGG - chr5_1:46092577-46092596 Msa0733110:three_prime_UTR 35.0%
AAGAACTTTGTTCAAAGCAG+AGG - chr5_1:46092703-46092722 Msa0733110:three_prime_UTR 35.0%
! TGCTTCATCTTCTGATGTTT+TGG - chr5_1:46092741-46092760 Msa0733110:three_prime_UTR 35.0%
ATCGTGATTAATTACGTTCC+TGG - chr5_1:46093120-46093139 Msa0733110:CDS 35.0%
TGATTAATTACGTTCCTGGA+TGG - chr5_1:46093124-46093143 Msa0733110:CDS 35.0%
TCGTCGATGACTAATATCTA+CGG + chr5_1:46093272-46093291 None:intergenic 35.0%
GCTTTCAACAGGATATACAA+AGG - chr5_1:46093337-46093356 Msa0733110:CDS 35.0%
CAACAGGATATACAAAGGAA+AGG - chr5_1:46093342-46093361 Msa0733110:CDS 35.0%
CGACAACATATATCTCCATT+CGG + chr5_1:46093520-46093539 None:intergenic 35.0%
TGCAAGAATTAGTGCATGAT+TGG - chr5_1:46093862-46093881 Msa0733110:CDS 35.0%
! GACGGTGTATATTTGGATTT+TGG + chr5_1:46093926-46093945 None:intergenic 35.0%
TTGGATTGACGGTGTATATT+TGG + chr5_1:46093933-46093952 None:intergenic 35.0%
TGAGTGTATGTTTGGATTGA+CGG + chr5_1:46093944-46093963 None:intergenic 35.0%
!!! TTCTTGTTTTTGCAGACAAG+TGG - chr5_1:46094015-46094034 Msa0733110:intron 35.0%
AGGTCTTGATTCTCTTGTAA+TGG - chr5_1:46094119-46094138 Msa0733110:intron 35.0%
GGTCTTGATTCTCTTGTAAT+GGG - chr5_1:46094120-46094139 Msa0733110:intron 35.0%
TTGATCAGGTAACTTCATCA+AGG + chr5_1:46094325-46094344 None:intergenic 35.0%
GAAGCTTGTGATCAAACATT+TGG - chr5_1:46094395-46094414 Msa0733110:CDS 35.0%
! TGCAAAAGGGTGTAAAAAGA+TGG - chr5_1:46094419-46094438 Msa0733110:CDS 35.0%
GTAGTTGTTAATCGAACTGA+AGG - chr5_1:46094441-46094460 Msa0733110:CDS 35.0%
GAACAGAAATATCAACGAAG+AGG + chr5_1:46094653-46094672 None:intergenic 35.0%
ATTTCTGTTCCTAGAAACGT+AGG - chr5_1:46094663-46094682 Msa0733110:intron 35.0%
GCCCTTAATTTCTTAATGGT+AGG + chr5_1:46094858-46094877 None:intergenic 35.0%
GGCTTATGCTGAAAGATTAA+GGG - chr5_1:46094875-46094894 Msa0733110:intron 35.0%
TAAGAAGACACAAAAAGCTG+TGG - chr5_1:46094944-46094963 Msa0733110:intron 35.0%
CTGTGGATGATCTTAGTAAA+GGG - chr5_1:46094961-46094980 Msa0733110:intron 35.0%
TCACATCTCAAATGTTGCAT+TGG + chr5_1:46095011-46095030 None:intergenic 35.0%
! ATGCAACATTTGAGATGTGA+TGG - chr5_1:46095011-46095030 Msa0733110:intron 35.0%
! TGCAACATTTGAGATGTGAT+GGG - chr5_1:46095012-46095031 Msa0733110:intron 35.0%
! TGAAACTGAGGTTTCTGTTT+TGG - chr5_1:46095100-46095119 Msa0733110:intron 35.0%
GATTCTTTCTCAAGCCTTTA+AGG + chr5_1:46095237-46095256 None:intergenic 35.0%
!!! GTCTCCTTAGTTTGTTTTTC+TGG - chr5_1:46095290-46095309 Msa0733110:CDS 35.0%
TGTACAAAATAGAGGAGTTG+TGG - chr5_1:46095356-46095375 Msa0733110:exon 35.0%
TCGATGACTAATATCTACGG+AGG + chr5_1:46093269-46093288 None:intergenic 40.0%
CAGATTACAAAGCTCACCAA+TGG + chr5_1:46093459-46093478 None:intergenic 40.0%
ATATATCTCCATTCGGTTGC+AGG + chr5_1:46093513-46093532 None:intergenic 40.0%
GTGTCAAAGAAGTCACTGAA+TGG - chr5_1:46093558-46093577 Msa0733110:CDS 40.0%
ACTGAATGGATGTCCAATGT+AGG - chr5_1:46093572-46093591 Msa0733110:CDS 40.0%
CACTAATTCTTGCACGAACT+CGG + chr5_1:46093856-46093875 None:intergenic 40.0%
TTAGTGCATGATTGGAACCA+CGG - chr5_1:46093870-46093889 Msa0733110:CDS 40.0%
!!! CACCTTTTTGAAGTATCAGC+AGG - chr5_1:46094099-46094118 Msa0733110:intron 40.0%
GACCTGCTGATACTTCAAAA+AGG + chr5_1:46094104-46094123 None:intergenic 40.0%
! GATTCTCTTGTAATGGGAGA+AGG - chr5_1:46094126-46094145 Msa0733110:intron 40.0%
!! CAACTTGTTTGACTTGTGCA+AGG + chr5_1:46094158-46094177 None:intergenic 40.0%
GTCAAACAAGTTGTGAAAGC+AGG - chr5_1:46094165-46094184 Msa0733110:intron 40.0%
AAAGCAGGACAAGGAGTTAA+TGG - chr5_1:46094180-46094199 Msa0733110:intron 40.0%
AGAATGCTAGTTATTGGAGC+TGG - chr5_1:46094363-46094382 Msa0733110:CDS 40.0%
AGTTATTGGAGCTGGCAAAA+TGG - chr5_1:46094371-46094390 Msa0733110:CDS 40.0%
GTTATTGGAGCTGGCAAAAT+GGG - chr5_1:46094372-46094391 Msa0733110:CDS 40.0%
TTATTGGAGCTGGCAAAATG+GGG - chr5_1:46094373-46094392 Msa0733110:CDS 40.0%
ACATTCGAGCATTTCCGAAA+GGG + chr5_1:46094520-46094539 None:intergenic 40.0%
TACATTCGAGCATTTCCGAA+AGG + chr5_1:46094521-46094540 None:intergenic 40.0%
TCGGAAATGCTCGAATGTAT+TGG - chr5_1:46094522-46094541 Msa0733110:CDS 40.0%
TCCTTTAGCAAGCGAAGAAA+TGG - chr5_1:46094617-46094636 Msa0733110:intron 40.0%
CCTTTAGCAAGCGAAGAAAT+GGG - chr5_1:46094618-46094637 Msa0733110:intron 40.0%
ACACATGAACCTACGTTTCT+AGG + chr5_1:46094675-46094694 None:intergenic 40.0%
CGATGATCTTGAGTCTGTTA+AGG - chr5_1:46094695-46094714 Msa0733110:intron 40.0%
! AAGAAAAGCAATGGAAGCAC+AGG - chr5_1:46094773-46094792 Msa0733110:intron 40.0%
! AATCGGGACAATTTGAAGCT+TGG - chr5_1:46094811-46094830 Msa0733110:intron 40.0%
GGGCTTATGCTGAAAGATTA+AGG - chr5_1:46094874-46094893 Msa0733110:intron 40.0%
GCTGAGCTTGAGAAATGTTT+AGG - chr5_1:46094900-46094919 Msa0733110:intron 40.0%
GCTGTGGATGATCTTAGTAA+AGG - chr5_1:46094960-46094979 Msa0733110:intron 40.0%
! TTCTCAAGCCTTTAAGGGTA+AGG + chr5_1:46095231-46095250 None:intergenic 40.0%
GGCTCTATTTATGAGTTTGG+AGG + chr5_1:46095382-46095401 None:intergenic 40.0%
! TGAAAGAGGCACACACATTT+AGG + chr5_1:46095403-46095422 None:intergenic 40.0%
ATGTGTGTGCCTCTTTCAAT+CGG - chr5_1:46095405-46095424 Msa0733110:five_prime_UTR 40.0%
AGGAGCAGCATTGTCGTTAT+CGG - chr5_1:46093362-46093381 Msa0733110:CDS 45.0%
CAGTGACTTCTTTGACACCA+CGG + chr5_1:46093556-46093575 None:intergenic 45.0%
TTGTAGCTTCACACTTACCG+TGG + chr5_1:46093890-46093909 None:intergenic 45.0%
! TACTTTGACAGCTCTGATGC+AGG + chr5_1:46094045-46094064 None:intergenic 45.0%
CAAGTTGTGAAAGCAGGACA+AGG - chr5_1:46094171-46094190 Msa0733110:intron 45.0%
GGACAAGGAGTTAATGGCTT+TGG - chr5_1:46094186-46094205 Msa0733110:intron 45.0%
! GGCTTTGGTAGAAACATCAG+TGG - chr5_1:46094201-46094220 Msa0733110:intron 45.0%
! CCGCAATGTTAGTCTCAGTT+CGG + chr5_1:46094263-46094282 None:intergenic 45.0%
CCGAACTGAGACTAACATTG+CGG - chr5_1:46094260-46094279 Msa0733110:intron 45.0%
TGGTGCAGTTTCTGTTAGCT+CGG - chr5_1:46094284-46094303 Msa0733110:intron 45.0%
TTACCTGATCAAGCCTCACA+TGG - chr5_1:46094333-46094352 Msa0733110:intron 45.0%
CATTCTTGCATTGCCATGTG+AGG + chr5_1:46094349-46094368 None:intergenic 45.0%
CATTCGAGCATTTCCGAAAG+GGG + chr5_1:46094519-46094538 None:intergenic 45.0%
! CCCATTTCTTCGCTTGCTAA+AGG + chr5_1:46094621-46094640 None:intergenic 45.0%
TTAGCAAGCGAAGAAATGGG+AGG - chr5_1:46094621-46094640 Msa0733110:intron 45.0%
TAGCAAGCGAAGAAATGGGA+GGG - chr5_1:46094622-46094641 Msa0733110:intron 45.0%
TCTTAGCCTGTCCTCTTTGT+TGG + chr5_1:46094757-46094776 None:intergenic 45.0%
GGACAGGCTAAGAAAAGCAA+TGG - chr5_1:46094764-46094783 Msa0733110:intron 45.0%
! ATGGAAGCACAGGTGATCAT+CGG - chr5_1:46094783-46094802 Msa0733110:intron 45.0%
! GATGTGATGGGAGTGATAGT+AGG - chr5_1:46095024-46095043 Msa0733110:intron 45.0%
GGAGCAGAAGATTAGAGCTA+AGG - chr5_1:46095121-46095140 Msa0733110:CDS 45.0%
GCAGAAGATTAGAGCTAAGG+TGG - chr5_1:46095124-46095143 Msa0733110:CDS 45.0%
!!! TCATTTTTTTTATAATAATT+TGG - chr5_1:46092919-46092938 Msa0733110:CDS 5.0%
GGAGCAGCATTGTCGTTATC+GGG - chr5_1:46093363-46093382 Msa0733110:CDS 50.0%
! AGTTTTTCGCGCACATCGAC+TGG + chr5_1:46093407-46093426 None:intergenic 50.0%
GCGCGAAAAACTTGCCATAC+CGG - chr5_1:46093415-46093434 Msa0733110:CDS 50.0%
TTGCCATACCGGAAGCAGAA+TGG - chr5_1:46093426-46093445 Msa0733110:CDS 50.0%
CAAAGCTCACCAATGGCTCT+AGG + chr5_1:46093452-46093471 None:intergenic 50.0%
TTCAAGCACGCAATCACCGT+CGG - chr5_1:46094228-46094247 Msa0733110:intron 50.0%
ACGCAATCACCGTCGGTAAA+AGG - chr5_1:46094235-46094254 Msa0733110:intron 50.0%
CGCAATCACCGTCGGTAAAA+GGG - chr5_1:46094236-46094255 Msa0733110:intron 50.0%
! AGTTCGGACCCTTTTACCGA+CGG + chr5_1:46094247-46094266 None:intergenic 50.0%
ACTGAGACTAACATTGCGGC+TGG - chr5_1:46094264-46094283 Msa0733110:intron 50.0%
TTGCCATGTGAGGCTTGATC+AGG + chr5_1:46094339-46094358 None:intergenic 50.0%
GGTTGTAGCTGCCAACAAAG+AGG - chr5_1:46094743-46094762 Msa0733110:intron 50.0%
TAGCTGCCAACAAAGAGGAC+AGG - chr5_1:46094748-46094767 Msa0733110:intron 50.0%
GGTGATCATCGGCGAAGAAT+CGG - chr5_1:46094794-46094813 Msa0733110:intron 50.0%
GTGATCATCGGCGAAGAATC+GGG - chr5_1:46094795-46094814 Msa0733110:intron 50.0%
AGGCCATTCTGCTTCCGGTA+TGG + chr5_1:46093432-46093451 None:intergenic 55.0%
! GCTCTAGGCCATTCTGCTTC+CGG + chr5_1:46093437-46093456 None:intergenic 55.0%
GCAGAATGGCCTAGAGCCAT+TGG - chr5_1:46093440-46093459 Msa0733110:CDS 55.0%
TCTGAGCACCTGCAACCGAA+TGG - chr5_1:46093502-46093521 Msa0733110:CDS 55.0%
GTCGCACTTTCTCAGCACCG+TGG - chr5_1:46093536-46093555 Msa0733110:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 46092475 46095473 46092475 ID=Msa0733110;Name=Msa0733110
chr5_1 mRNA 46092475 46095473 46092475 ID=Msa0733110-mRNA-1;Parent=Msa0733110;Name=Msa0733110-mRNA-1;_AED=0.03;_eAED=0.03;_QI=99|1|1|1|1|1|3|310|543
chr5_1 exon 46092475 46093918 46092475 ID=Msa0733110-mRNA-1:exon:13172;Parent=Msa0733110-mRNA-1
chr5_1 exon 46094359 46094600 46094359 ID=Msa0733110-mRNA-1:exon:13171;Parent=Msa0733110-mRNA-1
chr5_1 exon 46095119 46095473 46095119 ID=Msa0733110-mRNA-1:exon:13170;Parent=Msa0733110-mRNA-1
chr5_1 five_prime_UTR 46095375 46095473 46095375 ID=Msa0733110-mRNA-1:five_prime_utr;Parent=Msa0733110-mRNA-1
chr5_1 CDS 46095119 46095374 46095119 ID=Msa0733110-mRNA-1:cds;Parent=Msa0733110-mRNA-1
chr5_1 CDS 46094359 46094600 46094359 ID=Msa0733110-mRNA-1:cds;Parent=Msa0733110-mRNA-1
chr5_1 CDS 46092785 46093918 46092785 ID=Msa0733110-mRNA-1:cds;Parent=Msa0733110-mRNA-1
chr5_1 three_prime_UTR 46092475 46092784 46092475 ID=Msa0733110-mRNA-1:three_prime_utr;Parent=Msa0733110-mRNA-1
Gene Sequence

>Msa0733110

ATGGCTGTTTCAACTAGTTTCTATGGTGCTAAATTGGAACCTTTGTTCCTTAAATGTTGTTCTTCTTCTTCAACAACATCATCATCCTCTTATGTTACTGCTCATTTATCATTCTTTGGTAGTAACAAAAAGAACTTTGTTCAAAGCAGAGGTTCAATTCGTTGTGATGCTTCATCTTCTGATGTTTTGGTTGATCCTAGTGATAATGCTAAATCTGTTTCTGCTCTACAACAGCTTAAAGCTTCTGCAGCTGATAGATATACAAAGGAAAGGAGCAGCATTGTCGTTATCGGGCTAAGTATTCATACTACACCAGTCGATGTGCGCGAAAAACTTGCCATACCGGAAGCAGAATGGCCTAGAGCCATTGGTGAGCTTTGTAATCTGAATCATATTGAAGAAGCTGCAGTTCTGAGCACCTGCAACCGAATGGAGATATATGTTGTCGCACTTTCTCAGCACCGTGGTGTCAAAGAAGTCACTGAATGGATGTCCAATACAAGTGGTATACCTGCATCAGAGCTGTCAAAGTATCTATTTTTGCTATACAACAAGGATGCAACACAACACCTTTTTGAAGTATCAGCAGGTCTTGATTCTCTTGTAATGGGAGAAGGTCAAATCCTTGCACAAGTCAAACAAGTTGTGAAAGCAGGACAAGGAGTTAATGGCTTTGGTAGAAACATCAGTGGTCTATTCAAGCACGCAATCACCGTCGGTAAAAGGGTCCGAACTGAGACTAACATTGCGGCTGGTGCAGTTTCTGTTAGCTCGGCTGCAGTCGAATTAGCCTTGATGAAGTTACCTGATCAAGCCTCACATGGCAATGCAAGAATGCTAGTTATTGGAGCTGGCAAAATGGGGAAGCTTGTGATCAAACATTTGGTTGCAAAAGGGTGTAAAAAGATGGTAGTTGTTAATCGAACTGAAGGGAGAGTTGCAGCAATCCGTGAAGAAATAAATGATGTTGAGATAATTTACAAACCCCTTTCGGAAATGCTCGAATGTATTGGTGAAGCAGATGTTGTTTTCACAAGCACTGCATCAGAGAATCCTTTGATTTTGAAACAAAATGTTAAGGAACTTCCTTTAGCAAGCGAAGAAATGGGAGGGAAACGCCTCTTCGTTGATATTTCTGTTCCTAGAAACGTAGGTTCATGTGTCGATGATCTTGAGTCTGTTAAGGTTTACAATGTTGATGATCTTAAAGAGGTTGTAGCTGCCAACAAAGAGGACAGGCTAAGAAAAGCAATGGAAGCACAGGTGATCATCGGCGAAGAATCGGGACAATTTGAAGCTTGGAGAGACTCATTAGAAACTGTTCCTACCATTAAGAAATTAAGGGCTTATGCTGAAAGATTAAGGGTTGCTGAGCTTGAGAAATGTTTAGGTAAAATGGGTGATGATATAAATAAGAAGACACAAAAAGCTGTGGATGATCTTAGTAAAGGGATTGTGAATAAAATGCTTCATGGTCCAATGCAACATTTGAGATGTGATGGGAGTGATAGTAGGACTTTGAGTGAGACACTTGAGAATATGCATGCTTTGAACAGAATGTTTAGTCTTGAAACTGAGGTTTCTGTTTTGGAGCAGAAGATTAGAGCTAAGGTGGAGCAAAAACCACAGTAA

Protein sequence

>Msa0733110

MAVSTSFYGAKLEPLFLKCCSSSSTTSSSSYVTAHLSFFGSNKKNFVQSRGSIRCDASSSDVLVDPSDNAKSVSALQQLKASAADRYTKERSSIVVIGLSIHTTPVDVREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSNTSGIPASELSKYLFLLYNKDATQHLFEVSAGLDSLVMGEGQILAQVKQVVKAGQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPDQASHGNARMLVIGAGKMGKLVIKHLVAKGCKKMVVVNRTEGRVAAIREEINDVEIIYKPLSEMLECIGEADVVFTSTASENPLILKQNVKELPLASEEMGGKRLFVDISVPRNVGSCVDDLESVKVYNVDDLKEVVAANKEDRLRKAMEAQVIIGEESGQFEAWRDSLETVPTIKKLRAYAERLRVAELEKCLGKMGDDINKKTQKAVDDLSKGIVNKMLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEVSVLEQKIRAKVEQKPQ*