AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0556070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556070 MtrunA17_Chr4g0043781 98.400 125 2 0 1 125 1 125 1.68e-89 255
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556070 AT1G31170.1 76.800 125 29 0 1 125 1 125 4.26e-58 176
Msa0556070 AT1G31170.2 76.800 125 29 0 1 125 1 125 4.26e-58 176
Msa0556070 AT1G31170.5 76.860 121 28 0 1 121 1 121 4.88e-55 168
Msa0556070 AT1G31170.3 75.200 125 29 1 1 125 1 123 1.71e-54 167
Msa0556070 AT1G31170.4 76.860 121 28 0 1 121 1 121 5.96e-54 168

Find 44 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAACTCCTCAAACTATT+TGG 0.234336 4_1:+54126035 None:intergenic
TAAAATTTAGGGGCTCTTTC+TGG 0.234797 4_1:-54125907 Msa0556070:intron
GGGGCTCTTTCTGGTGGTTC+TGG 0.256526 4_1:-54125898 Msa0556070:CDS
ATGGATAGTATTAGTGAAAT+TGG 0.282662 4_1:-54125772 Msa0556070:CDS
AGAATCTTGGCCGTTGAAAA+TGG 0.303540 4_1:-54126205 Msa0556070:five_prime_UTR
AAACAAAGTTCAAGAACTTA+TGG 0.307753 4_1:-54125791 Msa0556070:CDS
CTTTCTGGTGGTTCTGGAAG+TGG 0.365172 4_1:-54125892 Msa0556070:CDS
GAGGTTGATGGAAACTATTA+TGG 0.381219 4_1:-54124356 Msa0556070:intron
ATTGATGTGCTTGAGGTTGA+TGG 0.382760 4_1:-54124368 Msa0556070:CDS
GTTGTGGTTATAGGTTTCTC+TGG 0.391419 4_1:-54124164 Msa0556070:intron
TGGTGTGGGTCCAGTGATAC+TGG 0.431666 4_1:-54125869 Msa0556070:CDS
GTGGCACAAAAGAGACTCTA+AGG 0.431947 4_1:-54124079 Msa0556070:intron
AAATGAGTGATGCACCATTA+GGG 0.432228 4_1:+54125994 None:intergenic
GGTTCTGGAAGTGGTGGTGT+GGG 0.445849 4_1:-54125883 Msa0556070:CDS
CCACCATACGCTGCAAAATA+CGG 0.452823 4_1:-54124103 Msa0556070:CDS
TCATCTATAATATGATCAAA+CGG 0.453068 4_1:+54123871 None:intergenic
TGCAGGTTCCAAATAGTTTG+AGG 0.463009 4_1:-54126043 Msa0556070:CDS
TGGTTCTGGAAGTGGTGGTG+TGG 0.464993 4_1:-54125884 Msa0556070:CDS
TTTGATCTAGTCCTCATCAT+AGG 0.468493 4_1:+54125820 None:intergenic
TCTGCTTCATCCAACCCTAA+TGG 0.481086 4_1:-54126008 Msa0556070:intron
CATCTATAATATGATCAAAC+GGG 0.488401 4_1:+54123872 None:intergenic
TTCCTCTTGATAAGATAAGA+AGG 0.501249 4_1:-54125843 Msa0556070:CDS
AGAGGAAGTTCCAGTATCAC+TGG 0.512026 4_1:+54125859 None:intergenic
GGGAACCACTATATGCTTTG+AGG 0.512626 4_1:+54123892 None:intergenic
TACGAGGCTCACCAACGACT+TGG 0.517478 4_1:-54124131 Msa0556070:CDS
TTGCTCCTCAAAGCATATAG+TGG 0.523233 4_1:-54123897 Msa0556070:three_prime_UTR
TAGGTTTCTCTGGCTGTCAC+CGG 0.528971 4_1:-54124154 Msa0556070:CDS
TAATCATTCAAAGTAATGAC+AGG 0.529110 4_1:-54123932 Msa0556070:intron
GTCGTTGGTGAGCCTCGTAC+CGG 0.547692 4_1:+54124135 None:intergenic
AATTTAGGGGCTCTTTCTGG+TGG 0.550422 4_1:-54125904 Msa0556070:intron
GGCCTTCTTATCTTATCAAG+AGG 0.554502 4_1:+54125841 None:intergenic
TCTGGTGGTTCTGGAAGTGG+TGG 0.571088 4_1:-54125889 Msa0556070:CDS
CTCTGGCTGTCACCGGTACG+AGG 0.572203 4_1:-54124147 Msa0556070:CDS
AATGTTTCTTCTTAGTGACA+AGG 0.605571 4_1:-54123815 Msa0556070:three_prime_UTR
ATGTTTCTTCTTAGTGACAA+GGG 0.607569 4_1:-54123814 Msa0556070:three_prime_UTR
TCTTGGCCGTTGAAAATGGT+GGG 0.610452 4_1:-54126201 Msa0556070:five_prime_UTR
ATCTTGGCCGTTGAAAATGG+TGG 0.614510 4_1:-54126202 Msa0556070:five_prime_UTR
TGGTGGGGAGTCCAAGTCGT+TGG 0.622695 4_1:+54124120 None:intergenic
AGATAAGAAGGCCTATGATG+AGG 0.627844 4_1:-54125831 Msa0556070:CDS
CTATTATCACATTACAAGCA+TGG 0.628525 4_1:+54126178 None:intergenic
GAGTGATGCACCATTAGGGT+TGG 0.637639 4_1:+54125998 None:intergenic
GATGCAGATTGATGTGCTTG+AGG 0.652589 4_1:-54124375 Msa0556070:intron
AATAAATAAATAAAACCACA+AGG 0.692841 4_1:-54126114 Msa0556070:five_prime_UTR
ATACGCTGCAAAATACGGCG+TGG 0.718853 4_1:-54124098 Msa0556070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTATGTTAAAATTTAG+GGG - chr4_1:54123981-54124000 Msa0556070:intron 10.0%
!! AATAAATAAATAAAACCACA+AGG - chr4_1:54123784-54123803 Msa0556070:three_prime_UTR 15.0%
!! CAAAATCTATTTATACTTTA+TGG - chr4_1:54124197-54124216 Msa0556070:intron 15.0%
!!! ATTGTGGATTTTTTTTTTTT+GGG - chr4_1:54124372-54124391 Msa0556070:intron 15.0%
!!! TTTTTAATATTAAAAGTGTG+CGG + chr4_1:54124449-54124468 None:intergenic 15.0%
!!! TTATTTTAACAAGAAATAGT+AGG + chr4_1:54125448-54125467 None:intergenic 15.0%
!!! ATTATGAATTGTATTCTTTT+TGG + chr4_1:54126131-54126150 None:intergenic 15.0%
!! AAAAATCATGTATTAGAAAT+TGG + chr4_1:54126154-54126173 None:intergenic 15.0%
!!! GATTCACATTTTTAATTTTC+TGG - chr4_1:54123756-54123775 Msa0556070:three_prime_UTR 20.0%
!! CAAAAAAAAAAAATCCACAA+TGG + chr4_1:54124373-54124392 None:intergenic 20.0%
!!! CATTGTGGATTTTTTTTTTT+TGG - chr4_1:54124371-54124390 Msa0556070:CDS 20.0%
!!! TTGTGGATTTTTTTTTTTTG+GGG - chr4_1:54124373-54124392 Msa0556070:intron 20.0%
!!! TTTTAATATTAAAAGTGTGC+GGG + chr4_1:54124448-54124467 None:intergenic 20.0%
!!! CTCTTATTAGATTTTTTCTT+AGG - chr4_1:54124655-54124674 Msa0556070:intron 20.0%
!! TTAATATCAAAGAAAATGAC+AGG + chr4_1:54124862-54124881 None:intergenic 20.0%
!!! TTACATTTTCTTTGATGAAT+TGG - chr4_1:54124940-54124959 Msa0556070:intron 20.0%
!! AATCTTGAAAATAAGTTAGT+CGG + chr4_1:54125676-54125695 None:intergenic 20.0%
!!! ATATCGATTATATTATGTTG+TGG - chr4_1:54125718-54125737 Msa0556070:intron 20.0%
!! TTATATTATGTTGTGGTTAT+AGG - chr4_1:54125725-54125744 Msa0556070:intron 20.0%
!! CATTACTTTGAATGATTAAA+TGG + chr4_1:54125964-54125983 None:intergenic 20.0%
!! TCATCTATAATATGATCAAA+CGG + chr4_1:54126030-54126049 None:intergenic 20.0%
!!! CAAGATATTTTTTTTCCTTG+TGG + chr4_1:54123802-54123821 None:intergenic 25.0%
! AAAAAAAATATCTTGCAGAG+AGG - chr4_1:54123807-54123826 Msa0556070:three_prime_UTR 25.0%
! AAACAAAGTTCAAGAACTTA+TGG - chr4_1:54124107-54124126 Msa0556070:CDS 25.0%
! ATGGATAGTATTAGTGAAAT+TGG - chr4_1:54124126-54124145 Msa0556070:CDS 25.0%
! TGTTGTATATAAGTATACCA+TGG - chr4_1:54124238-54124257 Msa0556070:intron 25.0%
! AATGACTATTAGAACCTTAA+GGG + chr4_1:54124278-54124297 None:intergenic 25.0%
! AAATGACTATTAGAACCTTA+AGG + chr4_1:54124279-54124298 None:intergenic 25.0%
! AAAAAAAAAATCCACAATGG+AGG + chr4_1:54124370-54124389 None:intergenic 25.0%
!!! TGTGGATTTTTTTTTTTTGG+GGG - chr4_1:54124374-54124393 Msa0556070:intron 25.0%
!! AGTTATTGATAGTTGATTAG+TGG - chr4_1:54124489-54124508 Msa0556070:intron 25.0%
!! GTTATTGATAGTTGATTAGT+GGG - chr4_1:54124490-54124509 Msa0556070:intron 25.0%
! TAATTACAAGTGTGAGTATT+CGG - chr4_1:54124767-54124786 Msa0556070:intron 25.0%
! ATATTAATCTTTGTAGCGAA+GGG - chr4_1:54124875-54124894 Msa0556070:intron 25.0%
! AGACTTAAAGAAAATGGTAA+AGG + chr4_1:54124987-54125006 None:intergenic 25.0%
!! TACCATTTTCTTTAAGTCTT+AGG - chr4_1:54124988-54125007 Msa0556070:intron 25.0%
! AACCTAAGACTTAAAGAAAA+TGG + chr4_1:54124993-54125012 None:intergenic 25.0%
! TGTTGAATACTATTGAGATT+AGG - chr4_1:54125311-54125330 Msa0556070:intron 25.0%
! GTTGAATACTATTGAGATTA+GGG - chr4_1:54125312-54125331 Msa0556070:intron 25.0%
! TTGAATACTATTGAGATTAG+GGG - chr4_1:54125313-54125332 Msa0556070:intron 25.0%
!! TTTGTTAAGGGATATGTTTT+TGG - chr4_1:54125355-54125374 Msa0556070:intron 25.0%
! TTCATCAAAATTATCTTGCT+CGG - chr4_1:54125476-54125495 Msa0556070:intron 25.0%
! TAAACAATCAAAACAGAACT+AGG - chr4_1:54125641-54125660 Msa0556070:intron 25.0%
!! CTAAGGTTAGTTAATATGTT+TGG - chr4_1:54125836-54125855 Msa0556070:CDS 25.0%
! TAATCATTCAAAGTAATGAC+AGG - chr4_1:54125966-54125985 Msa0556070:intron 25.0%
! CATCTATAATATGATCAAAC+GGG + chr4_1:54126029-54126048 None:intergenic 25.0%
CTATTATCACATTACAAGCA+TGG + chr4_1:54123723-54123742 None:intergenic 30.0%
TTCCTCTTGATAAGATAAGA+AGG - chr4_1:54124055-54124074 Msa0556070:intron 30.0%
ATATGCAAAAGAGAGAGTAA+GGG + chr4_1:54124170-54124189 None:intergenic 30.0%
AATATGCAAAAGAGAGAGTA+AGG + chr4_1:54124171-54124190 None:intergenic 30.0%
ATTTAAATAGAAGCCCCTTA+AGG - chr4_1:54124261-54124280 Msa0556070:intron 30.0%
ATGACTATTAGAACCTTAAG+GGG + chr4_1:54124277-54124296 None:intergenic 30.0%
ATTAAGTACGGTGTCTTAAT+TGG + chr4_1:54124342-54124361 None:intergenic 30.0%
ATTAAGACACCGTACTTAAT+AGG - chr4_1:54124342-54124361 Msa0556070:intron 30.0%
CTCACACAAAGTTCTTAAAT+GGG + chr4_1:54124517-54124536 None:intergenic 30.0%
TCTCACACAAAGTTCTTAAA+TGG + chr4_1:54124518-54124537 None:intergenic 30.0%
!!! CCATTTTTGGGTACTTAAAT+GGG + chr4_1:54124617-54124636 None:intergenic 30.0%
CCATTTAAGTACCCAAAAAT+GGG - chr4_1:54124615-54124634 Msa0556070:intron 30.0%
!! TCTAATAAGAGCATCTACAA+TGG + chr4_1:54124646-54124665 None:intergenic 30.0%
TTATGGAAAGTGGTGATATT+TGG - chr4_1:54124723-54124742 Msa0556070:intron 30.0%
TATGGAAAGTGGTGATATTT+GGG - chr4_1:54124724-54124743 Msa0556070:intron 30.0%
GATATTAATCTTTGTAGCGA+AGG - chr4_1:54124874-54124893 Msa0556070:intron 30.0%
AGGAATTGTTGACACATATA+GGG + chr4_1:54125022-54125041 None:intergenic 30.0%
TAGGAATTGTTGACACATAT+AGG + chr4_1:54125023-54125042 None:intergenic 30.0%
TTCAGATCAGAACAATGTAA+TGG + chr4_1:54125166-54125185 None:intergenic 30.0%
TATAGAACATACAGTGAGAA+TGG + chr4_1:54125274-54125293 None:intergenic 30.0%
TCTCAATAGTATTCAACAGT+GGG + chr4_1:54125309-54125328 None:intergenic 30.0%
ATCTCAATAGTATTCAACAG+TGG + chr4_1:54125310-54125329 None:intergenic 30.0%
TGAATACTATTGAGATTAGG+GGG - chr4_1:54125314-54125333 Msa0556070:intron 30.0%
! ACTTATGACTCTGTTTGTTA+AGG - chr4_1:54125342-54125361 Msa0556070:intron 30.0%
! CTTATGACTCTGTTTGTTAA+GGG - chr4_1:54125343-54125362 Msa0556070:intron 30.0%
! GATTTTCTTGCATTTTGTGT+TGG - chr4_1:54125408-54125427 Msa0556070:intron 30.0%
! ATGGTATGTACTTTTCTGAA+TGG - chr4_1:54125561-54125580 Msa0556070:intron 30.0%
ATTGTTTATAGCGATAAGCA+CGG + chr4_1:54125629-54125648 None:intergenic 30.0%
! CTAACTACAAATGAAAGCAT+TGG - chr4_1:54125859-54125878 Msa0556070:CDS 30.0%
! ATATTTGTTTCTCATCGTGT+AGG - chr4_1:54125914-54125933 Msa0556070:intron 30.0%
AATGTTTCTTCTTAGTGACA+AGG - chr4_1:54126083-54126102 Msa0556070:five_prime_UTR 30.0%
ATGTTTCTTCTTAGTGACAA+GGG - chr4_1:54126084-54126103 Msa0556070:five_prime_UTR 30.0%
TGCAGAGAGGAAGAAAAAAA+TGG - chr4_1:54123820-54123839 Msa0556070:three_prime_UTR 35.0%
! AATGGCAAATTTTGTTCTGC+AGG - chr4_1:54123838-54123857 Msa0556070:three_prime_UTR 35.0%
GTGAAACTCCTCAAACTATT+TGG + chr4_1:54123866-54123885 None:intergenic 35.0%
AAATGAGTGATGCACCATTA+GGG + chr4_1:54123907-54123926 None:intergenic 35.0%
AAAATGAGTGATGCACCATT+AGG + chr4_1:54123908-54123927 None:intergenic 35.0%
TAAAATTTAGGGGCTCTTTC+TGG - chr4_1:54123991-54124010 Msa0556070:intron 35.0%
TTTGATCTAGTCCTCATCAT+AGG + chr4_1:54124081-54124100 None:intergenic 35.0%
TTGGTAAAGACATCACCATT+GGG + chr4_1:54124323-54124342 None:intergenic 35.0%
ATTGGTAAAGACATCACCAT+TGG + chr4_1:54124324-54124343 None:intergenic 35.0%
!! ATGGAGGTACCTATTAAGTA+CGG + chr4_1:54124354-54124373 None:intergenic 35.0%
TTAAGACCCCCAACTTTAAA+CGG - chr4_1:54124420-54124439 Msa0556070:intron 35.0%
TAAGAACTTTGTGTGAGATC+TGG - chr4_1:54124520-54124539 Msa0556070:intron 35.0%
CCCATTTAAGTACCCAAAAA+TGG - chr4_1:54124614-54124633 Msa0556070:intron 35.0%
!!! CCCATTTTTGGGTACTTAAA+TGG + chr4_1:54124618-54124637 None:intergenic 35.0%
TGTCAAGTCACATACAGTTA+TGG - chr4_1:54124706-54124725 Msa0556070:intron 35.0%
TCACATACAGTTATGGAAAG+TGG - chr4_1:54124713-54124732 Msa0556070:intron 35.0%
GGTCTTCTGATCTACATAAA+AGG + chr4_1:54124966-54124985 None:intergenic 35.0%
TGTGTCAACAATTCCTATGT+TGG - chr4_1:54125026-54125045 Msa0556070:intron 35.0%
GTGTCAACAATTCCTATGTT+GGG - chr4_1:54125027-54125046 Msa0556070:intron 35.0%
ACATTGTTCTGATCTGAAAG+TGG - chr4_1:54125168-54125187 Msa0556070:intron 35.0%
CATTGTTCTGATCTGAAAGT+GGG - chr4_1:54125169-54125188 Msa0556070:intron 35.0%
ATTGTTCTGATCTGAAAGTG+GGG - chr4_1:54125170-54125189 Msa0556070:intron 35.0%
TGTGTGCATGCAATCAAAAT+TGG - chr4_1:54125200-54125219 Msa0556070:intron 35.0%
! AATTGGTCTGTAGTTAGAGA+TGG - chr4_1:54125217-54125236 Msa0556070:intron 35.0%
!! GAGGTTGATGGAAACTATTA+TGG - chr4_1:54125542-54125561 Msa0556070:intron 35.0%
TTTCAAGATTCTGCTTACAC+TGG - chr4_1:54125686-54125705 Msa0556070:intron 35.0%
AGAATCTTGGCCGTTGAAAA+TGG - chr4_1:54123693-54123712 Msa0556070:three_prime_UTR 40.0%
TGCAGGTTCCAAATAGTTTG+AGG - chr4_1:54123855-54123874 Msa0556070:three_prime_UTR 40.0%
GGCCTTCTTATCTTATCAAG+AGG + chr4_1:54124060-54124079 None:intergenic 40.0%
AGATAAGAAGGCCTATGATG+AGG - chr4_1:54124067-54124086 Msa0556070:intron 40.0%
AAGAGAGAGTAAGGGATTAC+AGG + chr4_1:54124162-54124181 None:intergenic 40.0%
GGGGCTTCTATTTAAATCCA+TGG + chr4_1:54124258-54124277 None:intergenic 40.0%
TGGTAAAGACATCACCATTG+GGG + chr4_1:54124322-54124341 None:intergenic 40.0%
CTTAATAGGTACCTCCATTG+TGG - chr4_1:54124356-54124375 Msa0556070:intron 40.0%
TAAGACCCCCAACTTTAAAC+GGG - chr4_1:54124421-54124440 Msa0556070:intron 40.0%
ACTTTGTGTGAGATCTGGAT+TGG - chr4_1:54124525-54124544 Msa0556070:intron 40.0%
AAAAGAGTGATGTGTACGTG+TGG - chr4_1:54124589-54124608 Msa0556070:intron 40.0%
AAAGAGTGATGTGTACGTGT+GGG - chr4_1:54124590-54124609 Msa0556070:intron 40.0%
!! CAATGGAGACACCCATTTTT+GGG + chr4_1:54124629-54124648 None:intergenic 40.0%
! ACAATGGAGACACCCATTTT+TGG + chr4_1:54124630-54124649 None:intergenic 40.0%
TACAAGTGTGAGTATTCGGT+TGG - chr4_1:54124771-54124790 Msa0556070:intron 40.0%
TTAATCTTTGTAGCGAAGGG+TGG - chr4_1:54124878-54124897 Msa0556070:intron 40.0%
TAATCTTTGTAGCGAAGGGT+GGG - chr4_1:54124879-54124898 Msa0556070:intron 40.0%
! AGTATGGATTGACCCAACAT+AGG + chr4_1:54125042-54125061 None:intergenic 40.0%
GGTGAATTGAAGCTAGAGTA+TGG + chr4_1:54125058-54125077 None:intergenic 40.0%
AGTGGTAGTTTAATCAGCAG+AGG + chr4_1:54125247-54125266 None:intergenic 40.0%
TACAGTGAGAATGGCTATAG+TGG + chr4_1:54125265-54125284 None:intergenic 40.0%
ATTGATGTGCTTGAGGTTGA+TGG - chr4_1:54125530-54125549 Msa0556070:intron 40.0%
GTTGTGGTTATAGGTTTCTC+TGG - chr4_1:54125734-54125753 Msa0556070:intron 40.0%
TTGCTCCTCAAAGCATATAG+TGG - chr4_1:54126001-54126020 Msa0556070:intron 40.0%
ATCTTGGCCGTTGAAAATGG+TGG - chr4_1:54123696-54123715 Msa0556070:three_prime_UTR 45.0%
TCTTGGCCGTTGAAAATGGT+GGG - chr4_1:54123697-54123716 Msa0556070:three_prime_UTR 45.0%
TCTGCTTCATCCAACCCTAA+TGG - chr4_1:54123890-54123909 Msa0556070:three_prime_UTR 45.0%
AATTTAGGGGCTCTTTCTGG+TGG - chr4_1:54123994-54124013 Msa0556070:intron 45.0%
AGAGGAAGTTCCAGTATCAC+TGG + chr4_1:54124042-54124061 None:intergenic 45.0%
GCTCTTTAGATCATCCCCAA+TGG - chr4_1:54124305-54124324 Msa0556070:intron 45.0%
! TTGTGTGAGATCTGGATTGG+AGG - chr4_1:54124528-54124547 Msa0556070:intron 45.0%
! TGTGTGAGATCTGGATTGGA+GGG - chr4_1:54124529-54124548 Msa0556070:intron 45.0%
GGAGGGATTGAGTGCTTATT+AGG - chr4_1:54124546-54124565 Msa0556070:intron 45.0%
GCACGGACACTTGTGATTAA+AGG + chr4_1:54124813-54124832 None:intergenic 45.0%
AAGTGTCCGTGCTACATAGT+TGG - chr4_1:54124821-54124840 Msa0556070:intron 45.0%
GTGTGTCCAACTATGTAGCA+CGG + chr4_1:54124830-54124849 None:intergenic 45.0%
GATGCAGATTGATGTGCTTG+AGG - chr4_1:54125523-54125542 Msa0556070:intron 45.0%
! GTATTTTGCAGCGTATGGTG+GGG + chr4_1:54125796-54125815 None:intergenic 45.0%
! CGTATTTTGCAGCGTATGGT+GGG + chr4_1:54125797-54125816 None:intergenic 45.0%
CCACCATACGCTGCAAAATA+CGG - chr4_1:54125795-54125814 Msa0556070:CDS 45.0%
GTGGCACAAAAGAGACTCTA+AGG - chr4_1:54125819-54125838 Msa0556070:CDS 45.0%
GGGAACCACTATATGCTTTG+AGG + chr4_1:54126009-54126028 None:intergenic 45.0%
!! TATTAATTATGTTAAAATTT+AGG - chr4_1:54123979-54123998 Msa0556070:intron 5.0%
!! ATTAATTATGTTAAAATTTA+GGG - chr4_1:54123980-54123999 Msa0556070:intron 5.0%
!!! TTATTCTTTTTTTTTTTTTT+TGG + chr4_1:54125115-54125134 None:intergenic 5.0%
! GCATGGCCCACCATTTTCAA+CGG + chr4_1:54123706-54123725 None:intergenic 50.0%
GAGTGATGCACCATTAGGGT+TGG + chr4_1:54123903-54123922 None:intergenic 50.0%
!! CTTTCTGGTGGTTCTGGAAG+TGG - chr4_1:54124006-54124025 Msa0556070:intron 50.0%
TTTGGGGGTCTCTTAAGACC+CGG - chr4_1:54124389-54124408 Msa0556070:intron 50.0%
GGGGTCTTAAATAAGACCCC+GGG + chr4_1:54124410-54124429 None:intergenic 50.0%
GGGGGTCTTAAATAAGACCC+CGG + chr4_1:54124411-54124430 None:intergenic 50.0%
! TGCGGGTCCCGTTTAAAGTT+GGG + chr4_1:54124431-54124450 None:intergenic 50.0%
! TCTAGCTTCAATTCACCCGC+TGG - chr4_1:54125061-54125080 Msa0556070:intron 50.0%
TAGGTTTCTCTGGCTGTCAC+CGG - chr4_1:54125744-54125763 Msa0556070:intron 50.0%
! CCGTATTTTGCAGCGTATGG+TGG + chr4_1:54125798-54125817 None:intergenic 50.0%
! ACGCCGTATTTTGCAGCGTA+TGG + chr4_1:54125801-54125820 None:intergenic 50.0%
ATACGCTGCAAAATACGGCG+TGG - chr4_1:54125800-54125819 Msa0556070:CDS 50.0%
!! TCTGGTGGTTCTGGAAGTGG+TGG - chr4_1:54124009-54124028 Msa0556070:intron 55.0%
!! TGGTTCTGGAAGTGGTGGTG+TGG - chr4_1:54124014-54124033 Msa0556070:intron 55.0%
!! GGTTCTGGAAGTGGTGGTGT+GGG - chr4_1:54124015-54124034 Msa0556070:intron 55.0%
TGGTGTGGGTCCAGTGATAC+TGG - chr4_1:54124029-54124048 Msa0556070:intron 55.0%
TTGGGGGTCTCTTAAGACCC+GGG - chr4_1:54124390-54124409 Msa0556070:intron 55.0%
! CGGGTCCCGTTTAAAGTTGG+GGG + chr4_1:54124429-54124448 None:intergenic 55.0%
! GCGGGTCCCGTTTAAAGTTG+GGG + chr4_1:54124430-54124449 None:intergenic 55.0%
! GTGCGGGTCCCGTTTAAAGT+TGG + chr4_1:54124432-54124451 None:intergenic 55.0%
AGCTTCAATTCACCCGCTGG+TGG - chr4_1:54125064-54125083 Msa0556070:intron 55.0%
TCAATTCACCCGCTGGTGGA+CGG - chr4_1:54125068-54125087 Msa0556070:intron 55.0%
TACGAGGCTCACCAACGACT+TGG - chr4_1:54125767-54125786 Msa0556070:CDS 55.0%
! GGGGCTCTTTCTGGTGGTTC+TGG - chr4_1:54124000-54124019 Msa0556070:intron 60.0%
TGGGGGTCTCTTAAGACCCG+GGG - chr4_1:54124391-54124410 Msa0556070:intron 60.0%
AAAGACCACCGTCCACCAGC+GGG + chr4_1:54125079-54125098 None:intergenic 60.0%
CAAAGACCACCGTCCACCAG+CGG + chr4_1:54125080-54125099 None:intergenic 60.0%
! GTCGTTGGTGAGCCTCGTAC+CGG + chr4_1:54125766-54125785 None:intergenic 60.0%
TGGTGGGGAGTCCAAGTCGT+TGG + chr4_1:54125781-54125800 None:intergenic 60.0%
! ATTCACCCGCTGGTGGACGG+TGG - chr4_1:54125071-54125090 Msa0556070:intron 65.0%
CTCTGGCTGTCACCGGTACG+AGG - chr4_1:54125751-54125770 Msa0556070:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 54123686 54126234 54123686 ID=Msa0556070;Name=Msa0556070
chr4_1 mRNA 54123686 54126234 54123686 ID=Msa0556070-mRNA-1;Parent=Msa0556070;Name=Msa0556070-mRNA-1;_AED=0.02;_eAED=0.02;_QI=153|1|1|1|0.8|0.66|6|262|125
chr4_1 exon 54123686 54123942 54123686 ID=Msa0556070-mRNA-1:exon:15911;Parent=Msa0556070-mRNA-1
chr4_1 exon 54123964 54123984 54123964 ID=Msa0556070-mRNA-1:exon:15910;Parent=Msa0556070-mRNA-1
chr4_1 exon 54124080 54124173 54124080 ID=Msa0556070-mRNA-1:exon:15909;Parent=Msa0556070-mRNA-1
chr4_1 exon 54124357 54124390 54124357 ID=Msa0556070-mRNA-1:exon:15908;Parent=Msa0556070-mRNA-1
chr4_1 exon 54125759 54125919 54125759 ID=Msa0556070-mRNA-1:exon:15907;Parent=Msa0556070-mRNA-1
chr4_1 exon 54126009 54126234 54126009 ID=Msa0556070-mRNA-1:exon:15906;Parent=Msa0556070-mRNA-1
chr4_1 five_prime_UTR 54126082 54126234 54126082 ID=Msa0556070-mRNA-1:five_prime_utr;Parent=Msa0556070-mRNA-1
chr4_1 CDS 54126009 54126081 54126009 ID=Msa0556070-mRNA-1:cds;Parent=Msa0556070-mRNA-1
chr4_1 CDS 54125759 54125919 54125759 ID=Msa0556070-mRNA-1:cds;Parent=Msa0556070-mRNA-1
chr4_1 CDS 54124357 54124390 54124357 ID=Msa0556070-mRNA-1:cds;Parent=Msa0556070-mRNA-1
chr4_1 CDS 54124080 54124173 54124080 ID=Msa0556070-mRNA-1:cds;Parent=Msa0556070-mRNA-1
chr4_1 CDS 54123969 54123984 54123969 ID=Msa0556070-mRNA-1:cds;Parent=Msa0556070-mRNA-1
chr4_1 three_prime_UTR 54123964 54123968 54123964 ID=Msa0556070-mRNA-1:three_prime_utr;Parent=Msa0556070-mRNA-1
chr4_1 three_prime_UTR 54123686 54123942 54123686 ID=Msa0556070-mRNA-1:three_prime_utr;Parent=Msa0556070-mRNA-1
Gene Sequence

>Msa0556070

ATGGCAAATTTTGTTCTGCAGGTTCCAAATAGTTTGAGGAGTTTCACTGTGTCTGCTTCATCCAACCCTAATGGGGCTCTTTCTGGTGGTTCTGGAAGTGGTGGTGTGGGTCCAGTGATACTGGAACTTCCTCTTGATAAGATAAGAAGGCCTATGATGAGGACTAGATCAAATGATCAAAACAAAGTTCAAGAACTTATGGATAGTATTAGTGAAATTGGTCTTCAAGTGCCTATTGATGTGCTTGAGGTTGATGGAAACTATTATGGTTTCTCTGGCTGTCACCGGTACGAGGCTCACCAACGACTTGGACTCCCCACCATACGCTGCAAAATACGGCGTGGCACAAAAGAGACTCTAAGGCATCACATGCGCTAA

Protein sequence

>Msa0556070

MANFVLQVPNSLRSFTVSASSNPNGALSGGSGSGGVGPVILELPLDKIRRPMMRTRSNDQNKVQELMDSISEIGLQVPIDVLEVDGNYYGFSGCHRYEAHQRLGLPTIRCKIRRGTKETLRHHMR*