AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0395940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0395940 MtrunA17_Chr3g0082121 91.775 693 57 0 36 728 1 693 0.0 1320
Msa0395940 MtrunA17_Chr1g0164591 92.508 307 23 0 156 462 1 307 0.0 610
Msa0395940 MtrunA17_Chr2g0324011 43.568 583 312 6 72 640 4 583 4.30e-165 489
Msa0395940 MtrunA17_Chr1g0203721 40.415 626 340 9 84 684 69 686 4.13e-152 465
Msa0395940 MtrunA17_Chr6g0458391 41.638 574 308 9 61 626 212 766 8.02e-151 458
Msa0395940 MtrunA17_Chr6g0458391 38.065 155 92 3 49 203 64 214 9.49e-20 94.4
Msa0395940 MtrunA17_Chr5g0448761 34.639 638 393 9 75 691 57 691 8.48e-123 386
Msa0395940 MtrunA17_Chr1g0202341 33.502 594 371 9 61 638 34 619 1.78e-103 332
Msa0395940 MtrunA17_Chr8g0363841 32.200 559 354 8 86 625 25 577 4.27e-98 318
Msa0395940 MtrunA17_Chr2g0287651 31.169 616 382 13 80 670 77 675 3.15e-93 310
Msa0395940 MtrunA17_Chr2g0329031 29.842 697 437 16 78 744 14 688 1.07e-90 300
Msa0395940 MtrunA17_Chr1g0207551 29.187 603 402 9 71 659 27 618 6.38e-88 294
Msa0395940 MtrunA17_Chr3g0080351 29.147 645 408 15 59 682 59 675 1.95e-79 271
Msa0395940 MtrunA17_Chr3g0118611 34.676 447 277 8 249 687 122 561 4.62e-78 266
Msa0395940 MtrunA17_Chr5g0440451 28.571 686 427 15 43 687 1 664 1.56e-76 265
Msa0395940 MtrunA17_Chr5g0448511 30.444 473 318 6 233 698 1 469 1.07e-74 252
Msa0395940 MtrunA17_Chr2g0296781 31.533 574 345 16 82 625 1 556 1.08e-72 251
Msa0395940 MtrunA17_Chr5g0441581 29.257 646 426 20 66 693 20 652 3.58e-72 249
Msa0395940 MtrunA17_Chr7g0258861 45.833 288 140 7 74 348 6 290 9.41e-72 236
Msa0395940 MtrunA17_Chr2g0287061 28.595 612 391 12 78 682 183 755 3.40e-71 248
Msa0395940 MtrunA17_Chr2g0276841 28.179 582 387 16 76 636 68 639 5.60e-67 234
Msa0395940 MtrunA17_Chr1g0198761 29.329 566 372 13 84 626 53 613 1.44e-65 232
Msa0395940 MtrunA17_Chr1g0203051 28.051 549 371 9 80 612 81 621 1.50e-65 229
Msa0395940 MtrunA17_Chr2g0291581 27.709 646 407 13 77 691 70 686 1.19e-64 228
Msa0395940 MtrunA17_Chr2g0294841 27.682 578 378 13 71 620 38 603 2.72e-63 225
Msa0395940 MtrunA17_Chr6g0477261 32.779 421 253 10 225 625 35 445 2.26e-59 213
Msa0395940 MtrunA17_Chr5g0401121 65.161 155 47 2 28 182 13 160 1.40e-58 196
Msa0395940 MtrunA17_Chr1g0149131 78.571 112 24 0 349 460 1 112 4.74e-58 192
Msa0395940 MtrunA17_Chr2g0290391 27.919 591 359 17 77 626 50 614 2.95e-55 202
Msa0395940 MtrunA17_Chr1g0196541 27.866 567 369 17 82 622 1 553 4.06e-53 196
Msa0395940 MtrunA17_Chr2g0291591 27.926 487 317 10 75 543 60 530 1.20e-47 177
Msa0395940 MtrunA17_Chr5g0431001 28.409 440 283 13 66 482 53 483 5.43e-41 157
Msa0395940 MtrunA17_Chr4g0033611 45.794 107 52 3 78 182 76 178 2.92e-20 91.3
Msa0395940 MtrunA17_Chr2g0329421 34.756 164 88 7 53 208 7 159 4.54e-19 86.7
Msa0395940 MtrunA17_Chr2g0308841 22.326 215 158 4 420 627 17 229 3.18e-15 76.6
Msa0395940 MtrunA17_Chr7g0238821 40.187 107 60 3 82 187 1 104 3.67e-14 69.3
Msa0395940 MtrunA17_Chr3g0078041 35.433 127 75 3 78 203 50 170 8.15e-14 71.6
Msa0395940 MtrunA17_Chr7g0233911 39.048 105 60 3 78 180 34 136 4.85e-13 68.9
Msa0395940 MtrunA17_Chr2g0329361 37.500 112 61 3 78 184 61 168 9.38e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0395940 AT4G38180.1 33.730 673 411 13 43 691 39 700 6.70e-115 365
Msa0395940 AT3G22170.2 31.077 650 386 14 57 670 34 657 1.38e-91 305
Msa0395940 AT3G22170.1 31.077 650 386 14 57 670 34 657 1.38e-91 305
Msa0395940 AT4G15090.1 28.983 659 439 8 50 687 16 666 6.78e-91 303
Msa0395940 AT4G15090.5 28.983 659 439 8 50 687 16 666 6.78e-91 303
Msa0395940 AT4G15090.3 28.983 659 439 8 50 687 16 666 6.78e-91 303
Msa0395940 AT4G15090.2 28.983 659 439 8 50 687 16 666 6.78e-91 303
Msa0395940 AT4G15090.4 28.983 659 439 8 50 687 16 666 6.78e-91 303
Msa0395940 AT1G76320.3 31.877 618 382 15 82 682 1 596 3.61e-87 289
Msa0395940 AT1G76320.2 31.877 618 382 15 82 682 1 596 1.16e-86 289
Msa0395940 AT1G76320.1 31.877 618 382 15 82 682 1 596 1.71e-86 289
Msa0395940 AT1G76320.4 31.877 618 382 15 82 682 1 596 1.71e-86 289
Msa0395940 AT2G27110.2 30.960 646 402 15 59 694 32 643 7.92e-84 284
Msa0395940 AT2G27110.1 30.960 646 402 15 59 694 32 643 7.92e-84 284
Msa0395940 AT3G06250.2 28.618 615 383 14 78 682 190 758 5.46e-75 258
Msa0395940 AT3G06250.1 28.618 615 383 14 78 682 190 758 5.46e-75 258
Msa0395940 AT3G06250.3 28.618 615 383 14 78 682 190 758 5.46e-75 258
Msa0395940 AT5G18960.2 28.892 623 388 15 71 682 204 782 2.74e-73 254
Msa0395940 AT5G18960.2 31.818 154 89 3 64 215 29 168 6.01e-13 73.2
Msa0395940 AT5G18960.1 28.892 623 388 15 71 682 204 782 2.74e-73 254
Msa0395940 AT5G18960.1 31.818 154 89 3 64 215 29 168 6.01e-13 73.2
Msa0395940 AT2G27110.3 33.113 453 287 8 249 694 55 498 7.21e-72 248
Msa0395940 AT2G32250.5 27.496 611 386 12 82 682 42 605 5.24e-70 244
Msa0395940 AT2G32250.8 27.496 611 386 12 82 682 1 564 1.07e-69 244
Msa0395940 AT2G32250.7 27.496 611 386 12 82 682 1 564 1.09e-69 244
Msa0395940 AT2G32250.2 27.496 611 386 12 82 682 42 605 1.41e-69 244
Msa0395940 AT2G32250.4 27.496 611 386 12 82 682 42 605 1.41e-69 244
Msa0395940 AT2G32250.6 27.496 611 386 12 82 682 42 605 1.56e-69 244
Msa0395940 AT2G32250.1 27.496 611 386 12 82 682 42 605 1.56e-69 244
Msa0395940 AT2G32250.3 27.496 611 386 12 82 682 42 605 1.56e-69 244
Msa0395940 AT1G10240.2 27.365 592 401 12 71 639 41 626 1.67e-64 228
Msa0395940 AT1G10240.1 27.365 592 401 12 71 639 41 626 1.67e-64 228
Msa0395940 AT4G38170.1 28.425 489 321 10 254 730 27 498 2.77e-64 224
Msa0395940 AT4G19990.7 27.337 706 427 16 66 728 15 677 1.59e-63 226
Msa0395940 AT4G19990.6 27.166 681 418 14 83 728 26 663 1.82e-63 226
Msa0395940 AT4G19990.2 27.166 681 418 14 83 728 26 663 1.82e-63 226
Msa0395940 AT4G19990.3 27.166 681 418 14 83 728 26 663 2.13e-63 226
Msa0395940 AT4G19990.4 27.166 681 418 14 83 728 26 663 2.13e-63 226
Msa0395940 AT4G19990.5 27.166 681 418 14 83 728 26 663 2.56e-63 226
Msa0395940 AT4G19990.1 26.512 645 400 13 117 728 3 606 3.45e-55 202
Msa0395940 AT5G28530.3 26.131 597 402 13 76 645 53 637 9.16e-55 200
Msa0395940 AT5G28530.2 26.131 597 402 13 76 645 53 637 9.16e-55 200
Msa0395940 AT5G28530.1 25.667 600 405 12 76 645 53 641 1.67e-54 200
Msa0395940 AT1G52520.1 29.094 574 359 16 77 623 84 636 2.69e-54 199
Msa0395940 AT1G80010.1 26.568 606 385 14 59 625 77 661 8.11e-54 198
Msa0395940 AT5G28530.5 25.301 581 364 17 76 645 53 574 1.89e-37 149
Msa0395940 AT5G28530.4 24.829 584 367 16 76 645 53 578 3.47e-37 148
Msa0395940 AT3G59470.3 41.176 136 70 4 78 207 70 201 1.55e-20 92.4
Msa0395940 AT3G59470.1 41.176 136 70 4 78 207 70 201 1.55e-20 92.4
Msa0395940 AT3G59470.2 40.876 137 71 4 78 208 82 214 2.10e-20 92.0
Msa0395940 AT3G07500.1 36.429 140 85 3 43 182 1 136 1.18e-15 77.0
Msa0395940 AT2G43280.1 42.202 109 57 4 84 188 28 134 3.97e-14 72.4
Msa0395940 AT4G12850.4 33.628 113 71 2 78 190 11 119 4.21e-12 64.7
Msa0395940 AT4G12850.2 33.645 107 67 2 78 184 11 113 4.49e-12 64.7
Msa0395940 AT4G12850.1 33.645 107 67 2 78 184 11 113 2.64e-11 63.5
Msa0395940 AT2G43280.2 40.000 100 54 4 93 188 2 99 2.82e-11 63.2

Find 142 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAAATAACAAATGTATTT+TGG 0.084293 3_2:+13342650 Msa0395940:CDS
CCGCATATGAGTAGCGTTTC+AGG 0.186096 3_2:+13341108 Msa0395940:CDS
CTTGCAGAGTTGCGAATTCT+AGG 0.220160 3_2:+13344480 Msa0395940:intron
AGTCGAAGGTGTAGAGAAAT+TGG 0.240498 3_2:+13341985 Msa0395940:CDS
TTCTCTACACCTTCGACTAT+TGG 0.255267 3_2:-13341980 None:intergenic
TTTGGTATTCGTCGAGAATA+TGG 0.287007 3_2:+13342142 Msa0395940:CDS
CACAATCCATGAAATGTTTC+CGG 0.296465 3_2:-13342955 None:intergenic
GCACAAATGATAAACGATTA+TGG 0.303139 3_2:+13342679 Msa0395940:CDS
GTTGTAGCGGCGGACGAATC+TGG 0.312180 3_2:+13342442 Msa0395940:CDS
TTGAACTCTCTTGATATAGA+TGG 0.314695 3_2:-13343017 None:intergenic
AATAAGTATAGTAGGAGAAT+TGG 0.329631 3_2:+13342118 Msa0395940:CDS
AATAAGGAGCGGACGGTAAT+GGG 0.340111 3_2:+13343537 Msa0395940:CDS
CATTTCATGGATTGTGCACT+TGG 0.341154 3_2:+13342962 Msa0395940:CDS
ATTGGGAAGTAATCAAGATT+TGG 0.341191 3_2:+13343710 Msa0395940:CDS
ATAATGTTTCTGAAGATTCA+TGG 0.342573 3_2:+13343127 Msa0395940:CDS
CGCCCGTTGGGAGTATTTGT+TGG 0.343808 3_2:+13342757 Msa0395940:CDS
TTGGTTATCTTCGAACTAAA+AGG 0.348624 3_2:+13342524 Msa0395940:CDS
ATTTCACTTGATCGAAAGAT+TGG 0.360362 3_2:+13342307 Msa0395940:CDS
GACGGTAATGGGGAATCTTA+TGG 0.365249 3_2:+13343548 Msa0395940:CDS
TACAAATTATGATAATAATA+AGG 0.368461 3_2:+13343521 Msa0395940:CDS
TTGATCAATTTAACCATTTG+AGG 0.371275 3_2:-13343795 None:intergenic
TCAAATAACCATTGAAAAGA+AGG 0.380370 3_2:-13342841 None:intergenic
TACGACATACATGACAAATA+AGG 0.385236 3_2:+13342729 Msa0395940:CDS
CGTGCTTTAAAGAGGGTAAA+CGG 0.389596 3_2:+13342209 Msa0395940:CDS
ATATGCGGCGGTTGAGTGTT+CGG 0.395370 3_2:-13341093 None:intergenic
GTCGAAGGTGTAGAGAAATT+GGG 0.397051 3_2:+13341986 Msa0395940:CDS
GGCTATTTCTTTAGTTATGC+CGG 0.399841 3_2:+13342936 Msa0395940:CDS
ATAAGTATAGTAGGAGAATT+GGG 0.404314 3_2:+13342119 Msa0395940:CDS
ATGACTCTCCAATGTTCATC+AGG 0.408059 3_2:-13344521 None:intergenic
TCTGGATGTTGGTGGGGAGC+AGG 0.410929 3_2:+13343989 Msa0395940:CDS
ATGGACAAGAGATGCAAGAT+TGG 0.411222 3_2:+13343692 Msa0395940:CDS
GTTATGCCGGAAACATTTCA+TGG 0.413868 3_2:+13342949 Msa0395940:CDS
TGCCTAAATTGAAAATGAAA+AGG 0.417192 3_2:+13343376 Msa0395940:CDS
AACGGGATGTGACGCGTGTA+TGG 0.418958 3_2:+13342282 Msa0395940:CDS
TTTGCTCTTCAACATCCATT+TGG 0.421736 3_2:-13342633 None:intergenic
TTATACACCACACTTGGAAA+TGG 0.423013 3_2:+13342060 Msa0395940:CDS
ACACGCGTCACATCCCGTTC+TGG 0.423399 3_2:-13342278 None:intergenic
GTGCTTTAAAGAGGGTAAAC+GGG 0.424178 3_2:+13342210 Msa0395940:CDS
ACGCTTTCAAGTTGAAGAAA+AGG 0.424810 3_2:-13341026 None:intergenic
GGAATTTCAAGAAGAATATG+AGG 0.425849 3_2:+13343449 Msa0395940:CDS
TAATAAGGAGCGGACGGTAA+TGG 0.433456 3_2:+13343536 Msa0395940:CDS
CTCATGTCTTGACTCATAAT+CGG 0.441200 3_2:-13343352 None:intergenic
GGAAGGGCAACCTATTGAAC+TGG 0.450560 3_2:+13343731 Msa0395940:CDS
CTGGATGTTGGTGGGGAGCA+GGG 0.451018 3_2:+13343990 Msa0395940:CDS
GGGGAATCTTATGGATCAAA+AGG 0.451072 3_2:+13343557 Msa0395940:CDS
GGAAATAAAAGCAGAAAAGA+TGG 0.452235 3_2:+13342163 Msa0395940:CDS
CATTGTTGATGCATTTCAAA+CGG 0.460056 3_2:+13342578 Msa0395940:CDS
GAAGAATATGAGGAATATCT+AGG 0.460765 3_2:+13343459 Msa0395940:CDS
CGCTTTCAAGTTGAAGAAAA+GGG 0.461448 3_2:-13341025 None:intergenic
TAAAATAATTGATGATATGT+TGG 0.463062 3_2:+13343878 Msa0395940:CDS
TGCGTAAAGAATTTGAAAGA+AGG 0.475897 3_2:+13343486 Msa0395940:CDS
TGGAAGTCATAAAAGAATGA+AGG 0.477032 3_2:-13342613 None:intergenic
TGGACAAGAGATGCAAGATT+GGG 0.479430 3_2:+13343693 Msa0395940:CDS
TTCCATGGACAACCCTTTCA+AGG 0.482368 3_2:-13343308 None:intergenic
CAACGAGTTATGTCCTCAAA+TGG 0.488180 3_2:+13343782 Msa0395940:CDS
GATGTGAATATTGTGCAAAA+TGG 0.489459 3_2:+13342019 Msa0395940:CDS
ATTCATTGTTCCGTATTCCA+TGG 0.490621 3_2:-13343323 None:intergenic
AATAAGGATTATCGCCCGTT+GGG 0.491675 3_2:+13342745 Msa0395940:CDS
CAAATAACCATTGAAAAGAA+GGG 0.495588 3_2:-13342840 None:intergenic
CGAGATCACTTGACAAAAGA+GGG 0.498904 3_2:+13342244 Msa0395940:CDS
GTCCAACAAATACTCCCAAC+GGG 0.502839 3_2:-13342759 None:intergenic
AAAGGGTTGTCCATGGAATA+CGG 0.503140 3_2:+13343313 Msa0395940:CDS
GCCTAAATTGAAAATGAAAA+GGG 0.504520 3_2:+13343377 Msa0395940:CDS
TGTTGATTATACACCACACT+TGG 0.511127 3_2:+13342054 Msa0395940:CDS
GCGTAAAGAATTTGAAAGAA+GGG 0.512208 3_2:+13343487 Msa0395940:CDS
ATCGTGACTCAGATATTTGT+CGG 0.516976 3_2:-13342411 None:intergenic
AATCATCTTCTTGAACCGCC+AGG 0.519049 3_2:+13342364 Msa0395940:CDS
TCGAAGGTGTAGAGAAATTG+GGG 0.521015 3_2:+13341987 Msa0395940:CDS
AAGGTTCACGTGCTTTAAAG+AGG 0.521767 3_2:+13342201 Msa0395940:CDS
GTTCGAAAACATTTCACTGC+AGG 0.524411 3_2:+13343195 Msa0395940:CDS
TATAGTAGGAGAATTGGGTT+TGG 0.529308 3_2:+13342124 Msa0395940:CDS
TGTCATGTATCCATACCAAT+TGG 0.531415 3_2:+13343936 Msa0395940:CDS
ACGAGATCACTTGACAAAAG+AGG 0.533209 3_2:+13342243 Msa0395940:CDS
AGGATGCGGTCACTAATGTA+TGG 0.533492 3_2:+13342544 Msa0395940:CDS
TTACATGTTGATCAGTGAGA+AGG 0.542218 3_2:-13342903 None:intergenic
AATTCTAGGTGATGGTCGTA+TGG 0.545224 3_2:+13344494 Msa0395940:CDS
TTTCCGGCTTGTACAAGCAT+AGG 0.546185 3_2:-13343402 None:intergenic
TCGAAAGATTGGTAAGTACA+AGG 0.548048 3_2:+13342318 Msa0395940:CDS
ATGCATTGATCTACATGAAG+AGG 0.551822 3_2:+13343062 Msa0395940:CDS
AAATTCATATGCTGCTGCCT+CGG 0.552735 3_2:-13342092 None:intergenic
GGAAGTAATCAAGATTTGGA+AGG 0.559886 3_2:+13343714 Msa0395940:CDS
GAGTTGCGAATTCTAGGTGA+TGG 0.561228 3_2:+13344486 Msa0395940:intron
GTCACTAATGTATGGTGAAG+TGG 0.561332 3_2:+13342552 Msa0395940:CDS
TACATGTTGATCAGTGAGAA+GGG 0.564542 3_2:-13342902 None:intergenic
CACCTTGAAAGGGTTGTCCA+TGG 0.564856 3_2:+13343306 Msa0395940:CDS
TTCTTCTTGAAATTCCTCAA+AGG 0.565966 3_2:-13343442 None:intergenic
ATGGATTCCCTGATGAACAT+TGG 0.567385 3_2:+13344513 Msa0395940:CDS
CGCTTCAGTATATAGTGTTG+AGG 0.567827 3_2:-13343669 None:intergenic
AAATAAGGATTATCGCCCGT+TGG 0.568611 3_2:+13342744 Msa0395940:CDS
GCTCCTATGCTTGTACAAGC+CGG 0.569380 3_2:+13343399 Msa0395940:CDS
AACACTATATACTGAAGCGA+TGG 0.569686 3_2:+13343673 Msa0395940:CDS
TGTATCTATACGAGAGAAGT+CGG 0.571195 3_2:-13344549 None:intergenic
TCAAACTCCATTTCCAAGTG+TGG 0.572468 3_2:-13342067 None:intergenic
GGGAGAGTAGAAACCAGAAC+GGG 0.572783 3_2:+13342265 Msa0395940:CDS
GGTTGAGTGTTCGGAAGGAA+CGG 0.574104 3_2:-13341084 None:intergenic
TGACAACAATGTCAACACTC+TGG 0.582033 3_2:+13343971 Msa0395940:CDS
TGTCATGTATGTCGTATCAA+AGG 0.583944 3_2:-13342722 None:intergenic
GGCGGCACTGCACGATGTGG+TGG 0.585320 3_2:-13341063 None:intergenic
TCACTAATGTATGGTGAAGT+GGG 0.590425 3_2:+13342553 Msa0395940:CDS
ACTAAATAATCACAAGCAGA+TGG 0.591874 3_2:+13342780 Msa0395940:CDS
GAAGTAATCAAGATTTGGAA+GGG 0.592932 3_2:+13343715 Msa0395940:CDS
TGACTCAGATATTTGTCGGT+GGG 0.595731 3_2:-13342407 None:intergenic
TCAACATGTAACAATGGCTA+AGG 0.596747 3_2:+13342915 Msa0395940:CDS
AGGTTCACGTGCTTTAAAGA+GGG 0.596805 3_2:+13342202 Msa0395940:CDS
CACTGATCAACATGTAACAA+TGG 0.600872 3_2:+13342909 Msa0395940:CDS
ATCATCTTCTTGAACCGCCA+GGG 0.601235 3_2:+13342365 Msa0395940:CDS
GGAAATGGAGTTTGAATCCG+AGG 0.601453 3_2:+13342075 Msa0395940:CDS
ATCTTCGAACTAAAAGGATG+CGG 0.601988 3_2:+13342530 Msa0395940:CDS
GATATTTGTCGGTGGGAGCG+AGG 0.602994 3_2:-13342400 None:intergenic
ATAAACGATTATGGATACTT+CGG 0.603159 3_2:+13342688 Msa0395940:CDS
TGATAATAATAAGGAGCGGA+CGG 0.606864 3_2:+13343530 Msa0395940:CDS
TGTCGTAAATTTGAGACACA+TGG 0.610330 3_2:+13343591 Msa0395940:CDS
TCAACACTCTGGATGTTGGT+GGG 0.611788 3_2:+13343982 Msa0395940:CDS
GGGGAGAGTAGAAACCAGAA+CGG 0.611921 3_2:+13342264 Msa0395940:CDS
GCGGCGGTTGAGTGTTCGGA+AGG 0.615705 3_2:-13341089 None:intergenic
ATGTGTACAAACAAGATGGT+GGG 0.619219 3_2:+13342491 Msa0395940:CDS
AGTCCAACAAATACTCCCAA+CGG 0.624240 3_2:-13342760 None:intergenic
CAACACTCTGGATGTTGGTG+GGG 0.627596 3_2:+13343983 Msa0395940:CDS
GTCAACACTCTGGATGTTGG+TGG 0.637024 3_2:+13343981 Msa0395940:CDS
TGTATCCATACCAATTGGCA+CGG 0.642140 3_2:+13343941 Msa0395940:CDS
TGACTCTCCAATGTTCATCA+GGG 0.643006 3_2:-13344520 None:intergenic
TCAACGATTCCAATAGTCGA+AGG 0.647658 3_2:+13341971 Msa0395940:CDS
ATAAGGAGCGGACGGTAATG+GGG 0.649896 3_2:+13343538 Msa0395940:CDS
AATGTCAACACTCTGGATGT+TGG 0.652365 3_2:+13343978 Msa0395940:CDS
GTGACTCAGATATTTGTCGG+TGG 0.655256 3_2:-13342408 None:intergenic
ATTGATCTACATGAAGAGGA+AGG 0.663372 3_2:+13343066 Msa0395940:CDS
ACGATTATCTCAAGTTGTAG+CGG 0.663702 3_2:+13342429 Msa0395940:CDS
AACGGCGGCACTGCACGATG+TGG 0.669788 3_2:-13341066 None:intergenic
ATATAAAAGCTCATTTCATG+AGG 0.670840 3_2:+13343754 Msa0395940:CDS
AATACGGAACAATGAATCAG+AGG 0.679671 3_2:+13343329 Msa0395940:CDS
TGCTTTAAAGAGGGTAAACG+GGG 0.679692 3_2:+13342211 Msa0395940:CDS
CGAGGAGTATGAAAATACCC+TGG 0.683837 3_2:-13342382 None:intergenic
GAGTATGTGTACAAACAAGA+TGG 0.685511 3_2:+13342487 Msa0395940:CDS
TATGTGTACAAACAAGATGG+TGG 0.686310 3_2:+13342490 Msa0395940:CDS
ATTATGATAATAATAAGGAG+CGG 0.687685 3_2:+13343526 Msa0395940:CDS
CCTGAAACGCTACTCATATG+CGG 0.688874 3_2:-13341108 None:intergenic
ATTATCTCAAGTTGTAGCGG+CGG 0.690563 3_2:+13342432 Msa0395940:CDS
GAGATCACTTGACAAAAGAG+GGG 0.708310 3_2:+13342245 Msa0395940:CDS
GATGGTGGGATAGATGCTGT+TGG 0.712065 3_2:+13342505 Msa0395940:CDS
TGAGTGTTCGGAAGGAACGG+CGG 0.714369 3_2:-13341081 None:intergenic
GAAACGCTACTCATATGCGG+CGG 0.723529 3_2:-13341105 None:intergenic
GGAGTATGAAAATACCCTGG+CGG 0.746615 3_2:-13342379 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTATAATAAGTATAGT+AGG + chr3_2:13342110-13342129 Msa0395940:CDS 10.0%
!! TACAAATTATGATAATAATA+AGG + chr3_2:13343521-13343540 Msa0395940:CDS 10.0%
!! CAAACAATAAAAATAGATAA+AGG - chr3_2:13341792-13341811 None:intergenic 15.0%
!!! TTGACTCTATTATTTTTTTA+AGG + chr3_2:13341935-13341954 Msa0395940:intron 15.0%
!!! TAAAATAATTGATGATATGT+TGG + chr3_2:13343878-13343897 Msa0395940:CDS 15.0%
!! GAAAATTTACAATGAATTTA+AGG + chr3_2:13344386-13344405 Msa0395940:intron 15.0%
!! AAAAAGTAAAAATACGTTTG+AGG + chr3_2:13341297-13341316 Msa0395940:intron 20.0%
!! TAATTAGGGTTTATTGTTTA+AGG + chr3_2:13341632-13341651 Msa0395940:intron 20.0%
!! TTTATTACTAAGAGATACAA+GGG - chr3_2:13341672-13341691 None:intergenic 20.0%
!! TAGTAATAAACTCATTGTAT+TGG + chr3_2:13341682-13341701 Msa0395940:intron 20.0%
!!! TTTTTTTAAGGAAACATGAA+TGG + chr3_2:13341947-13341966 Msa0395940:intron 20.0%
!!! TTTTTTAAGGAAACATGAAT+GGG + chr3_2:13341948-13341967 Msa0395940:intron 20.0%
!!! AGCAAATAACAAATGTATTT+TGG + chr3_2:13342650-13342669 Msa0395940:CDS 20.0%
!!! GCAAATAACAAATGTATTTT+GGG + chr3_2:13342651-13342670 Msa0395940:CDS 20.0%
!!! TTTTTCAATTGAAGGAAAAA+TGG + chr3_2:13343160-13343179 Msa0395940:CDS 20.0%
!!! TTTTCAATTGAAGGAAAAAT+GGG + chr3_2:13343161-13343180 Msa0395940:CDS 20.0%
!! ATTATGATAATAATAAGGAG+CGG + chr3_2:13343526-13343545 Msa0395940:CDS 20.0%
!! AGAAATTGCAAATATTCAAT+AGG + chr3_2:13344290-13344309 Msa0395940:intron 20.0%
!!! CTCTTTTGTTTGTAATGTTA+TGG + chr3_2:13341258-13341277 Msa0395940:intron 25.0%
! TCGATATAATGAGATCAAAA+TGG + chr3_2:13341365-13341384 Msa0395940:intron 25.0%
!! TTATCAGAATTGCGATTTTA+AGG - chr3_2:13341405-13341424 None:intergenic 25.0%
! GAACTAGGGTTTATTTAAAA+GGG + chr3_2:13341493-13341512 Msa0395940:intron 25.0%
! AACTAGGGTTTATTTAAAAG+GGG + chr3_2:13341494-13341513 Msa0395940:intron 25.0%
!!! TGCTTTTGGGATATATTATA+GGG + chr3_2:13341536-13341555 Msa0395940:intron 25.0%
! TTCAGAAAAGGATAGTAATT+AGG + chr3_2:13341617-13341636 Msa0395940:intron 25.0%
! TCAGAAAAGGATAGTAATTA+GGG + chr3_2:13341618-13341637 Msa0395940:intron 25.0%
! GTTTATTACTAAGAGATACA+AGG - chr3_2:13341673-13341692 None:intergenic 25.0%
! ATAAACTCATTGTATTGGAT+TGG + chr3_2:13341687-13341706 Msa0395940:intron 25.0%
! AATAAGTATAGTAGGAGAAT+TGG + chr3_2:13342118-13342137 Msa0395940:CDS 25.0%
! ATAAGTATAGTAGGAGAATT+GGG + chr3_2:13342119-13342138 Msa0395940:CDS 25.0%
!! ATTCTTTTATGACTTCCAAA+TGG + chr3_2:13342618-13342637 Msa0395940:CDS 25.0%
! ATAAACGATTATGGATACTT+CGG + chr3_2:13342688-13342707 Msa0395940:CDS 25.0%
! CAAATAACCATTGAAAAGAA+GGG - chr3_2:13342843-13342862 None:intergenic 25.0%
! TCAAATAACCATTGAAAAGA+AGG - chr3_2:13342844-13342863 None:intergenic 25.0%
!! ATAATGTTTCTGAAGATTCA+TGG + chr3_2:13343127-13343146 Msa0395940:CDS 25.0%
! CCTTCAATTGAAAAATCATA+CGG - chr3_2:13343155-13343174 None:intergenic 25.0%
! TGCCTAAATTGAAAATGAAA+AGG + chr3_2:13343376-13343395 Msa0395940:CDS 25.0%
! GCCTAAATTGAAAATGAAAA+GGG + chr3_2:13343377-13343396 Msa0395940:CDS 25.0%
! ATATAAAAGCTCATTTCATG+AGG + chr3_2:13343754-13343773 Msa0395940:CDS 25.0%
! TTGATCAATTTAACCATTTG+AGG - chr3_2:13343798-13343817 None:intergenic 25.0%
! ATTAGACTCTTCAAAAACTT+TGG - chr3_2:13343859-13343878 None:intergenic 25.0%
! GCTCAAATAATGCTAAAAAA+CGG + chr3_2:13344031-13344050 Msa0395940:intron 25.0%
! CTCAAATAATGCTAAAAAAC+GGG + chr3_2:13344032-13344051 Msa0395940:intron 25.0%
CATTACAAACAAAAGAGACA+CGG - chr3_2:13341255-13341274 None:intergenic 30.0%
ATCGCAATTCTGATAAGTTA+TGG + chr3_2:13341409-13341428 Msa0395940:intron 30.0%
GGAACTAGGGTTTATTTAAA+AGG + chr3_2:13341492-13341511 Msa0395940:intron 30.0%
ACTAGGGTTTATTTAAAAGG+GGG + chr3_2:13341495-13341514 Msa0395940:intron 30.0%
TTATTTAAAAGGGGGTTCTT+AGG + chr3_2:13341503-13341522 Msa0395940:intron 30.0%
!!! GTGCTTTTGGGATATATTAT+AGG + chr3_2:13341535-13341554 Msa0395940:intron 30.0%
TTGGGATATATTATAGGGTT+AGG + chr3_2:13341541-13341560 Msa0395940:intron 30.0%
ATCATTGAGTCTATTGATCA+TGG + chr3_2:13341592-13341611 Msa0395940:intron 30.0%
TCATTGAGTCTATTGATCAT+GGG + chr3_2:13341593-13341612 Msa0395940:intron 30.0%
AAGTCATTGTTAGATTGAAC+TGG + chr3_2:13341733-13341752 Msa0395940:intron 30.0%
!! GTTTTAATCAAATTCACAGC+AGG + chr3_2:13341878-13341897 Msa0395940:intron 30.0%
GATGTGAATATTGTGCAAAA+TGG + chr3_2:13342019-13342038 Msa0395940:CDS 30.0%
GGAAATAAAAGCAGAAAAGA+TGG + chr3_2:13342163-13342182 Msa0395940:CDS 30.0%
ATTTCACTTGATCGAAAGAT+TGG + chr3_2:13342307-13342326 Msa0395940:CDS 30.0%
TTGGTTATCTTCGAACTAAA+AGG + chr3_2:13342524-13342543 Msa0395940:CDS 30.0%
CATTGTTGATGCATTTCAAA+CGG + chr3_2:13342578-13342597 Msa0395940:CDS 30.0%
TGGAAGTCATAAAAGAATGA+AGG - chr3_2:13342616-13342635 None:intergenic 30.0%
GCACAAATGATAAACGATTA+TGG + chr3_2:13342679-13342698 Msa0395940:CDS 30.0%
TACGACATACATGACAAATA+AGG + chr3_2:13342729-13342748 Msa0395940:CDS 30.0%
ACTAAATAATCACAAGCAGA+TGG + chr3_2:13342780-13342799 Msa0395940:CDS 30.0%
! AAACAATCCCTTCTTTTCAA+TGG + chr3_2:13342833-13342852 Msa0395940:CDS 30.0%
! TGAAACTTTTCTCAAAGCAA+TGG + chr3_2:13342861-13342880 Msa0395940:CDS 30.0%
! GAAACTTTTCTCAAAGCAAT+GGG + chr3_2:13342862-13342881 Msa0395940:CDS 30.0%
TTGAACTCTCTTGATATAGA+TGG - chr3_2:13343020-13343039 None:intergenic 30.0%
!! CCGTATGATTTTTCAATTGA+AGG + chr3_2:13343152-13343171 Msa0395940:CDS 30.0%
! AATTTTTCACACACCTTGAA+AGG + chr3_2:13343295-13343314 Msa0395940:CDS 30.0%
! ATTTTTCACACACCTTGAAA+GGG + chr3_2:13343296-13343315 Msa0395940:CDS 30.0%
! GCCCTTTTCATTTTCAATTT+AGG - chr3_2:13343381-13343400 None:intergenic 30.0%
!!! TTTTGGAGTGTAAATGTTTC+CGG - chr3_2:13343421-13343440 None:intergenic 30.0%
! TGAAATTCCTCAAAGGTTTT+TGG - chr3_2:13343438-13343457 None:intergenic 30.0%
TTCTTCTTGAAATTCCTCAA+AGG - chr3_2:13343445-13343464 None:intergenic 30.0%
GGAATTTCAAGAAGAATATG+AGG + chr3_2:13343449-13343468 Msa0395940:CDS 30.0%
GAAGAATATGAGGAATATCT+AGG + chr3_2:13343459-13343478 Msa0395940:CDS 30.0%
TGCGTAAAGAATTTGAAAGA+AGG + chr3_2:13343486-13343505 Msa0395940:CDS 30.0%
GCGTAAAGAATTTGAAAGAA+GGG + chr3_2:13343487-13343506 Msa0395940:CDS 30.0%
ATTGGGAAGTAATCAAGATT+TGG + chr3_2:13343710-13343729 Msa0395940:CDS 30.0%
GAAGTAATCAAGATTTGGAA+GGG + chr3_2:13343715-13343734 Msa0395940:CDS 30.0%
! GCTTTTATATCCAGTTCAAT+AGG - chr3_2:13343744-13343763 None:intergenic 30.0%
! ATAATGCTAAAAAACGGGTT+TGG + chr3_2:13344037-13344056 Msa0395940:intron 30.0%
AAGATAAGGACAAGCATATA+TGG - chr3_2:13344332-13344351 None:intergenic 30.0%
! ATACTTGAAATGTCCTGTTT+TGG + chr3_2:13344409-13344428 Msa0395940:intron 30.0%
! TACTTGAAATGTCCTGTTTT+GGG + chr3_2:13344410-13344429 Msa0395940:intron 30.0%
!! CGCTTTCAAGTTGAAGAAAA+GGG - chr3_2:13341028-13341047 None:intergenic 35.0%
!! ACGCTTTCAAGTTGAAGAAA+AGG - chr3_2:13341029-13341048 None:intergenic 35.0%
! GTCTCTTTAGTTGGTCATTT+TGG - chr3_2:13341324-13341343 None:intergenic 35.0%
ATCTCAAGTGTCTCTTTAGT+TGG - chr3_2:13341333-13341352 None:intergenic 35.0%
AATTCTGATAAGTTATGGCG+AGG + chr3_2:13341414-13341433 Msa0395940:intron 35.0%
! TAGGAAGAATTGAGTGCTTT+TGG + chr3_2:13341522-13341541 Msa0395940:intron 35.0%
! AGGAAGAATTGAGTGCTTTT+GGG + chr3_2:13341523-13341542 Msa0395940:intron 35.0%
TTGATCATGGGATTCAGAAA+AGG + chr3_2:13341605-13341624 Msa0395940:intron 35.0%
TAACAATGACTTACGTCTCA+AGG - chr3_2:13341725-13341744 None:intergenic 35.0%
TTGTGTTTGTTTGATCACGT+TGG + chr3_2:13341809-13341828 Msa0395940:intron 35.0%
! TTTGTTTGATCACGTTGGTT+TGG + chr3_2:13341814-13341833 Msa0395940:intron 35.0%
TGCTCTACACATCAAAGTAT+TGG + chr3_2:13341850-13341869 Msa0395940:intron 35.0%
! TGTTGATTATACACCACACT+TGG + chr3_2:13342054-13342073 Msa0395940:CDS 35.0%
TTATACACCACACTTGGAAA+TGG + chr3_2:13342060-13342079 Msa0395940:CDS 35.0%
TATAGTAGGAGAATTGGGTT+TGG + chr3_2:13342124-13342143 Msa0395940:CDS 35.0%
TTTGGTATTCGTCGAGAATA+TGG + chr3_2:13342142-13342161 Msa0395940:CDS 35.0%
!!! ATGGAGTTTTGACTTCAAGA+AGG + chr3_2:13342182-13342201 Msa0395940:CDS 35.0%
TCGAAAGATTGGTAAGTACA+AGG + chr3_2:13342318-13342337 Msa0395940:CDS 35.0%
ATCGTGACTCAGATATTTGT+CGG - chr3_2:13342414-13342433 None:intergenic 35.0%
! ACGATTATCTCAAGTTGTAG+CGG + chr3_2:13342429-13342448 Msa0395940:CDS 35.0%
GAGTATGTGTACAAACAAGA+TGG + chr3_2:13342487-13342506 Msa0395940:CDS 35.0%
TATGTGTACAAACAAGATGG+TGG + chr3_2:13342490-13342509 Msa0395940:CDS 35.0%
ATGTGTACAAACAAGATGGT+GGG + chr3_2:13342491-13342510 Msa0395940:CDS 35.0%
ATCTTCGAACTAAAAGGATG+CGG + chr3_2:13342530-13342549 Msa0395940:CDS 35.0%
TCACTAATGTATGGTGAAGT+GGG + chr3_2:13342553-13342572 Msa0395940:CDS 35.0%
TTTGCTCTTCAACATCCATT+TGG - chr3_2:13342636-13342655 None:intergenic 35.0%
TGTCATGTATGTCGTATCAA+AGG - chr3_2:13342725-13342744 None:intergenic 35.0%
TACATGTTGATCAGTGAGAA+GGG - chr3_2:13342905-13342924 None:intergenic 35.0%
TTACATGTTGATCAGTGAGA+AGG - chr3_2:13342906-13342925 None:intergenic 35.0%
CACTGATCAACATGTAACAA+TGG + chr3_2:13342909-13342928 Msa0395940:CDS 35.0%
TCAACATGTAACAATGGCTA+AGG + chr3_2:13342915-13342934 Msa0395940:CDS 35.0%
!! GGCTATTTCTTTAGTTATGC+CGG + chr3_2:13342936-13342955 Msa0395940:CDS 35.0%
CACAATCCATGAAATGTTTC+CGG - chr3_2:13342958-13342977 None:intergenic 35.0%
! ATGCATTGATCTACATGAAG+AGG + chr3_2:13343062-13343081 Msa0395940:CDS 35.0%
ATTGATCTACATGAAGAGGA+AGG + chr3_2:13343066-13343085 Msa0395940:CDS 35.0%
AATTGAAGGAAAAATGGGCA+TGG + chr3_2:13343166-13343185 Msa0395940:CDS 35.0%
ATTGAAGGAAAAATGGGCAT+GGG + chr3_2:13343167-13343186 Msa0395940:CDS 35.0%
ATTCATTGTTCCGTATTCCA+TGG - chr3_2:13343326-13343345 None:intergenic 35.0%
AATACGGAACAATGAATCAG+AGG + chr3_2:13343329-13343348 Msa0395940:CDS 35.0%
CTCATGTCTTGACTCATAAT+CGG - chr3_2:13343355-13343374 None:intergenic 35.0%
TTACACTCCAAAAACCTTTG+AGG + chr3_2:13343428-13343447 Msa0395940:CDS 35.0%
TGATAATAATAAGGAGCGGA+CGG + chr3_2:13343530-13343549 Msa0395940:CDS 35.0%
! TGTCGTAAATTTGAGACACA+TGG + chr3_2:13343591-13343610 Msa0395940:CDS 35.0%
AACACTATATACTGAAGCGA+TGG + chr3_2:13343673-13343692 Msa0395940:CDS 35.0%
GGAAGTAATCAAGATTTGGA+AGG + chr3_2:13343714-13343733 Msa0395940:CDS 35.0%
! TATGTTGGCTAAAAAGTTCG+TGG + chr3_2:13343893-13343912 Msa0395940:CDS 35.0%
! ATGTTGGCTAAAAAGTTCGT+GGG + chr3_2:13343894-13343913 Msa0395940:CDS 35.0%
TGTCATGTATCCATACCAAT+TGG + chr3_2:13343936-13343955 Msa0395940:CDS 35.0%
GTAAATGATACTGTGACAAC+TGG - chr3_2:13344070-13344089 None:intergenic 35.0%
TGTCACAGTATCATTTACTC+AGG + chr3_2:13344072-13344091 Msa0395940:intron 35.0%
TGAGAGATTGTAATGTTGTG+GGG - chr3_2:13344204-13344223 None:intergenic 35.0%
GTGAGAGATTGTAATGTTGT+GGG - chr3_2:13344205-13344224 None:intergenic 35.0%
AGTGAGAGATTGTAATGTTG+TGG - chr3_2:13344206-13344225 None:intergenic 35.0%
CAATATGGTAAGGATTCATG+TGG - chr3_2:13344259-13344278 None:intergenic 35.0%
AAGTGAAGTGCAATATGGTA+AGG - chr3_2:13344269-13344288 None:intergenic 35.0%
TTCTCAAGTGAAGTGCAATA+TGG - chr3_2:13344274-13344293 None:intergenic 35.0%
AGTGGAAATGACTGAAGATA+AGG - chr3_2:13344346-13344365 None:intergenic 35.0%
CCCTCACAACGCAAATTTAT+GGG - chr3_2:13341473-13341492 None:intergenic 40.0%
CCCATAAATTTGCGTTGTGA+GGG + chr3_2:13341470-13341489 Msa0395940:intron 40.0%
CCATAAATTTGCGTTGTGAG+GGG + chr3_2:13341471-13341490 Msa0395940:intron 40.0%
AGGAAACAATCTAAACACGC+TGG + chr3_2:13341561-13341580 Msa0395940:intron 40.0%
TCAACGATTCCAATAGTCGA+AGG + chr3_2:13341971-13341990 Msa0395940:CDS 40.0%
TTCTCTACACCTTCGACTAT+TGG - chr3_2:13341983-13342002 None:intergenic 40.0%
! AGTCGAAGGTGTAGAGAAAT+TGG + chr3_2:13341985-13342004 Msa0395940:CDS 40.0%
! GTCGAAGGTGTAGAGAAATT+GGG + chr3_2:13341986-13342005 Msa0395940:CDS 40.0%
! TCGAAGGTGTAGAGAAATTG+GGG + chr3_2:13341987-13342006 Msa0395940:CDS 40.0%
TCAAACTCCATTTCCAAGTG+TGG - chr3_2:13342070-13342089 None:intergenic 40.0%
AAATTCATATGCTGCTGCCT+CGG - chr3_2:13342095-13342114 None:intergenic 40.0%
!! AAGGTTCACGTGCTTTAAAG+AGG + chr3_2:13342201-13342220 Msa0395940:CDS 40.0%
!! AGGTTCACGTGCTTTAAAGA+GGG + chr3_2:13342202-13342221 Msa0395940:CDS 40.0%
!! CGTGCTTTAAAGAGGGTAAA+CGG + chr3_2:13342209-13342228 Msa0395940:CDS 40.0%
!! GTGCTTTAAAGAGGGTAAAC+GGG + chr3_2:13342210-13342229 Msa0395940:CDS 40.0%
!! TGCTTTAAAGAGGGTAAACG+GGG + chr3_2:13342211-13342230 Msa0395940:CDS 40.0%
ACGAGATCACTTGACAAAAG+AGG + chr3_2:13342243-13342262 Msa0395940:CDS 40.0%
CGAGATCACTTGACAAAAGA+GGG + chr3_2:13342244-13342263 Msa0395940:CDS 40.0%
GAGATCACTTGACAAAAGAG+GGG + chr3_2:13342245-13342264 Msa0395940:CDS 40.0%
TGACTCAGATATTTGTCGGT+GGG - chr3_2:13342410-13342429 None:intergenic 40.0%
! ATTATCTCAAGTTGTAGCGG+CGG + chr3_2:13342432-13342451 Msa0395940:CDS 40.0%
GTCACTAATGTATGGTGAAG+TGG + chr3_2:13342552-13342571 Msa0395940:CDS 40.0%
AAATAAGGATTATCGCCCGT+TGG + chr3_2:13342744-13342763 Msa0395940:CDS 40.0%
AATAAGGATTATCGCCCGTT+GGG + chr3_2:13342745-13342764 Msa0395940:CDS 40.0%
AGTCCAACAAATACTCCCAA+CGG - chr3_2:13342763-13342782 None:intergenic 40.0%
!! CACAAGCAGATGGTTGTTTT+TGG + chr3_2:13342790-13342809 Msa0395940:CDS 40.0%
! ACTTTTCTCAAAGCAATGGG+TGG + chr3_2:13342865-13342884 Msa0395940:CDS 40.0%
! TGATCAGTGAGAAGGGTTTT+AGG - chr3_2:13342898-13342917 None:intergenic 40.0%
GTTATGCCGGAAACATTTCA+TGG + chr3_2:13342949-13342968 Msa0395940:CDS 40.0%
! CATTTCATGGATTGTGCACT+TGG + chr3_2:13342962-13342981 Msa0395940:CDS 40.0%
GTTCGAAAACATTTCACTGC+AGG + chr3_2:13343195-13343214 Msa0395940:CDS 40.0%
AAAGGGTTGTCCATGGAATA+CGG + chr3_2:13343313-13343332 Msa0395940:CDS 40.0%
GGGGAATCTTATGGATCAAA+AGG + chr3_2:13343557-13343576 Msa0395940:CDS 40.0%
CGCTTCAGTATATAGTGTTG+AGG - chr3_2:13343672-13343691 None:intergenic 40.0%
ATGGACAAGAGATGCAAGAT+TGG + chr3_2:13343692-13343711 Msa0395940:CDS 40.0%
TGGACAAGAGATGCAAGATT+GGG + chr3_2:13343693-13343712 Msa0395940:CDS 40.0%
CAACGAGTTATGTCCTCAAA+TGG + chr3_2:13343782-13343801 Msa0395940:CDS 40.0%
! TGTTGGCTAAAAAGTTCGTG+GGG + chr3_2:13343895-13343914 Msa0395940:CDS 40.0%
TGTATCCATACCAATTGGCA+CGG + chr3_2:13343941-13343960 Msa0395940:CDS 40.0%
! TTTTTCCGTGCCAATTGGTA+TGG - chr3_2:13343949-13343968 None:intergenic 40.0%
!!! TCACTTTTTTCCGTGCCAAT+TGG - chr3_2:13343954-13343973 None:intergenic 40.0%
TGACAACAATGTCAACACTC+TGG + chr3_2:13343971-13343990 Msa0395940:CDS 40.0%
AATGTCAACACTCTGGATGT+TGG + chr3_2:13343978-13343997 Msa0395940:CDS 40.0%
AAAGACCATTACATCCTGAG+TGG + chr3_2:13344132-13344151 Msa0395940:intron 40.0%
TGAGCATTCAGTCTATGAAG+TGG - chr3_2:13344364-13344383 None:intergenic 40.0%
AGTAGACAAACTCCCAAAAC+AGG - chr3_2:13344425-13344444 None:intergenic 40.0%
TGTCTACTTCAGCTATCACT+AGG + chr3_2:13344437-13344456 Msa0395940:intron 40.0%
TACTTCAGCTATCACTAGGT+GGG + chr3_2:13344441-13344460 Msa0395940:intron 40.0%
! AATTCTAGGTGATGGTCGTA+TGG + chr3_2:13344494-13344513 Msa0395940:CDS 40.0%
ATGGATTCCCTGATGAACAT+TGG + chr3_2:13344513-13344532 Msa0395940:CDS 40.0%
TGACTCTCCAATGTTCATCA+GGG - chr3_2:13344523-13344542 None:intergenic 40.0%
ATGACTCTCCAATGTTCATC+AGG - chr3_2:13344524-13344543 None:intergenic 40.0%
CCTGAAACGCTACTCATATG+CGG - chr3_2:13341111-13341130 None:intergenic 45.0%
GCCCATAAATTTGCGTTGTG+AGG + chr3_2:13341469-13341488 Msa0395940:intron 45.0%
CCCCTCACAACGCAAATTTA+TGG - chr3_2:13341474-13341493 None:intergenic 45.0%
GGAAATGGAGTTTGAATCCG+AGG + chr3_2:13342075-13342094 Msa0395940:CDS 45.0%
AATCATCTTCTTGAACCGCC+AGG + chr3_2:13342364-13342383 Msa0395940:CDS 45.0%
ATCATCTTCTTGAACCGCCA+GGG + chr3_2:13342365-13342384 Msa0395940:CDS 45.0%
GGAGTATGAAAATACCCTGG+CGG - chr3_2:13342382-13342401 None:intergenic 45.0%
! CGAGGAGTATGAAAATACCC+TGG - chr3_2:13342385-13342404 None:intergenic 45.0%
GTGACTCAGATATTTGTCGG+TGG - chr3_2:13342411-13342430 None:intergenic 45.0%
AGGATGCGGTCACTAATGTA+TGG + chr3_2:13342544-13342563 Msa0395940:CDS 45.0%
GTCCAACAAATACTCCCAAC+GGG - chr3_2:13342762-13342781 None:intergenic 45.0%
!! AAGGTGTGTTTTTGAACGCG+TGG + chr3_2:13343085-13343104 Msa0395940:CDS 45.0%
TTCCATGGACAACCCTTTCA+AGG - chr3_2:13343311-13343330 None:intergenic 45.0%
! TTTCCGGCTTGTACAAGCAT+AGG - chr3_2:13343405-13343424 None:intergenic 45.0%
TAATAAGGAGCGGACGGTAA+TGG + chr3_2:13343536-13343555 Msa0395940:CDS 45.0%
AATAAGGAGCGGACGGTAAT+GGG + chr3_2:13343537-13343556 Msa0395940:CDS 45.0%
!! GACGGTAATGGGGAATCTTA+TGG + chr3_2:13343548-13343567 Msa0395940:CDS 45.0%
GTTGGCTAAAAAGTTCGTGG+GGG + chr3_2:13343896-13343915 Msa0395940:CDS 45.0%
TCAACACTCTGGATGTTGGT+GGG + chr3_2:13343982-13344001 Msa0395940:CDS 45.0%
CAGGTCACAACATCCAAAAG+AGG + chr3_2:13344091-13344110 Msa0395940:intron 45.0%
ACCATTACATCCTGAGTGGA+TGG + chr3_2:13344136-13344155 Msa0395940:intron 45.0%
ACCATCCACTCAGGATGTAA+TGG - chr3_2:13344140-13344159 None:intergenic 45.0%
GTTGTGGGGAGAACATTCTT+GGG - chr3_2:13344190-13344209 None:intergenic 45.0%
TGTTGTGGGGAGAACATTCT+TGG - chr3_2:13344191-13344210 None:intergenic 45.0%
CTACTTCAGCTATCACTAGG+TGG + chr3_2:13344440-13344459 Msa0395940:intron 45.0%
ACTTCAGCTATCACTAGGTG+GGG + chr3_2:13344442-13344461 Msa0395940:intron 45.0%
TTCGCAACTCTGCAAGACAA+GGG - chr3_2:13344476-13344495 None:intergenic 45.0%
ATTCGCAACTCTGCAAGACA+AGG - chr3_2:13344477-13344496 None:intergenic 45.0%
CTTGCAGAGTTGCGAATTCT+AGG + chr3_2:13344480-13344499 Msa0395940:intron 45.0%
GAGTTGCGAATTCTAGGTGA+TGG + chr3_2:13344486-13344505 Msa0395940:intron 45.0%
!! TTATATGAATATTAATTATT+TGG + chr3_2:13341181-13341200 Msa0395940:intron 5.0%
!! TATATGAATATTAATTATTT+GGG + chr3_2:13341182-13341201 Msa0395940:intron 5.0%
GGTTGAGTGTTCGGAAGGAA+CGG - chr3_2:13341087-13341106 None:intergenic 50.0%
ATATGCGGCGGTTGAGTGTT+CGG - chr3_2:13341096-13341115 None:intergenic 50.0%
GAAACGCTACTCATATGCGG+CGG - chr3_2:13341108-13341127 None:intergenic 50.0%
CCGCATATGAGTAGCGTTTC+AGG + chr3_2:13341108-13341127 Msa0395940:CDS 50.0%
AACGCAAATTTATGGGCGCC+TGG - chr3_2:13341466-13341485 None:intergenic 50.0%
TTTGCGTTGTGAGGGGAACT+AGG + chr3_2:13341478-13341497 Msa0395940:intron 50.0%
TTGCGTTGTGAGGGGAACTA+GGG + chr3_2:13341479-13341498 Msa0395940:intron 50.0%
GACTTACGTCTCAAGGAGAG+AGG - chr3_2:13341718-13341737 None:intergenic 50.0%
GGGGAGAGTAGAAACCAGAA+CGG + chr3_2:13342264-13342283 Msa0395940:CDS 50.0%
GGGAGAGTAGAAACCAGAAC+GGG + chr3_2:13342265-13342284 Msa0395940:CDS 50.0%
!! GATGGTGGGATAGATGCTGT+TGG + chr3_2:13342505-13342524 Msa0395940:CDS 50.0%
CACCTTGAAAGGGTTGTCCA+TGG + chr3_2:13343306-13343325 Msa0395940:CDS 50.0%
GCTCCTATGCTTGTACAAGC+CGG + chr3_2:13343399-13343418 Msa0395940:CDS 50.0%
ATAAGGAGCGGACGGTAATG+GGG + chr3_2:13343538-13343557 Msa0395940:CDS 50.0%
GGAAGGGCAACCTATTGAAC+TGG + chr3_2:13343731-13343750 Msa0395940:CDS 50.0%
GTCAACACTCTGGATGTTGG+TGG + chr3_2:13343981-13344000 Msa0395940:CDS 50.0%
CAACACTCTGGATGTTGGTG+GGG + chr3_2:13343983-13344002 Msa0395940:CDS 50.0%
! CTGCTGCTACTCACCTCTTT+TGG - chr3_2:13344107-13344126 None:intergenic 50.0%
CATCCTGAGTGGATGGTGAT+TGG + chr3_2:13344143-13344162 Msa0395940:intron 50.0%
AGTCCAATCACCATCCACTC+AGG - chr3_2:13344149-13344168 None:intergenic 50.0%
TGGGGAGAACATTCTTGGGT+AGG - chr3_2:13344186-13344205 None:intergenic 50.0%
TGAGTGTTCGGAAGGAACGG+CGG - chr3_2:13341084-13341103 None:intergenic 55.0%
! CCTGGTAGCGAAAAGGCAAC+TGG - chr3_2:13341448-13341467 None:intergenic 55.0%
! CCAGTTGCCTTTTCGCTACC+AGG + chr3_2:13341445-13341464 Msa0395940:intron 55.0%
AACGGGATGTGACGCGTGTA+TGG + chr3_2:13342282-13342301 Msa0395940:CDS 55.0%
GATATTTGTCGGTGGGAGCG+AGG - chr3_2:13342403-13342422 None:intergenic 55.0%
!! CGCCCGTTGGGAGTATTTGT+TGG + chr3_2:13342757-13342776 Msa0395940:CDS 55.0%
! ATGGGCGCCTGGTAGCGAAA+AGG - chr3_2:13341455-13341474 None:intergenic 60.0%
ACACGCGTCACATCCCGTTC+TGG - chr3_2:13342281-13342300 None:intergenic 60.0%
GTTGTAGCGGCGGACGAATC+TGG + chr3_2:13342442-13342461 Msa0395940:CDS 60.0%
! TCTGGATGTTGGTGGGGAGC+AGG + chr3_2:13343989-13344008 Msa0395940:CDS 60.0%
! CTGGATGTTGGTGGGGAGCA+GGG + chr3_2:13343990-13344009 Msa0395940:CDS 60.0%
AACGGCGGCACTGCACGATG+TGG - chr3_2:13341069-13341088 None:intergenic 65.0%
GCGGCGGTTGAGTGTTCGGA+AGG - chr3_2:13341092-13341111 None:intergenic 65.0%
GGCGGCACTGCACGATGTGG+TGG - chr3_2:13341066-13341085 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 13341009 13344566 13341009 ID=Msa0395940;Name=Msa0395940
chr3_2 mRNA 13341009 13344566 13341009 ID=Msa0395940-mRNA-1;Parent=Msa0395940;Name=Msa0395940-mRNA-1;_AED=0.27;_eAED=0.30;_QI=0|0.5|0|1|1|1|3|0|751
chr3_2 exon 13341009 13341129 13341009 ID=Msa0395940-mRNA-1:exon:3103;Parent=Msa0395940-mRNA-1
chr3_2 exon 13341957 13344011 13341957 ID=Msa0395940-mRNA-1:exon:3104;Parent=Msa0395940-mRNA-1
chr3_2 exon 13344487 13344566 13344487 ID=Msa0395940-mRNA-1:exon:3105;Parent=Msa0395940-mRNA-1
chr3_2 CDS 13341009 13341129 13341009 ID=Msa0395940-mRNA-1:cds;Parent=Msa0395940-mRNA-1
chr3_2 CDS 13341957 13344011 13341957 ID=Msa0395940-mRNA-1:cds;Parent=Msa0395940-mRNA-1
chr3_2 CDS 13344487 13344566 13344487 ID=Msa0395940-mRNA-1:cds;Parent=Msa0395940-mRNA-1
Gene Sequence

>Msa0395940

ATGAAAAAAGGTCATACCCTTTTCTTCAACTTGAAAGCGTCTGTTGAAAGAGTACCACCACATCGTGCAGTGCCGCCGTTCCTTCCGAACACTCAACCGCCGCATATGAGTAGCGTTTCAGGAAACATGAATGGGTCAACGATTCCAATAGTCGAAGGTGTAGAGAAATTGGGGAATAATATTGATGTGAATATTGTGCAAAATGGAGAAGAGAGTGTTGTTGATTATACACCACACTTGGAAATGGAGTTTGAATCCGAGGCAGCAGCATATGAATTTTATAATAAGTATAGTAGGAGAATTGGGTTTGGTATTCGTCGAGAATATGGAAATAAAAGCAGAAAAGATGGAGTTTTGACTTCAAGAAGGTTCACGTGCTTTAAAGAGGGTAAACGGGGTGTTGACAAACGAGATCACTTGACAAAAGAGGGGAGAGTAGAAACCAGAACGGGATGTGACGCGTGTATGGTTATTTCACTTGATCGAAAGATTGGTAAGTACAAGGTTGTTGACTTTGTAGCTCAACATAATCATCTTCTTGAACCGCCAGGGTATTTTCATACTCCTCGCTCCCACCGACAAATATCTGAGTCACGATTATCTCAAGTTGTAGCGGCGGACGAATCTGGATTAAAACGAAAAGATTTTCATGAGTATGTGTACAAACAAGATGGTGGGATAGATGCTGTTGGTTATCTTCGAACTAAAAGGATGCGGTCACTAATGTATGGTGAAGTGGGTGCATTGTTGATGCATTTCAAACGGCAAAGTGAAAATCCTTCATTCTTTTATGACTTCCAAATGGATGTTGAAGAGCAAATAACAAATGTATTTTGGGCAGATGCACAAATGATAAACGATTATGGATACTTCGGTGATGTCATCACCTTTGATACGACATACATGACAAATAAGGATTATCGCCCGTTGGGAGTATTTGTTGGACTAAATAATCACAAGCAGATGGTTGTTTTTGGTGCAACATTGCTATATGATCAAACAATCCCTTCTTTTCAATGGTTATTTGAAACTTTTCTCAAAGCAATGGGTGGAGAAAAGCCTAAAACCCTTCTCACTGATCAACATGTAACAATGGCTAAGGCTATTTCTTTAGTTATGCCGGAAACATTTCATGGATTGTGCACTTGGCGTATGAGAGAAAATGCACAGAGACATGTGAACCATCTATATCAAGAGAGTTCAAAATTCTGCTCAGATTTTGAAGCATGCATTGATCTACATGAAGAGGAAGGTGTGTTTTTGAACGCGTGGAATGTTTTACTTGTCGAACATAATGTTTCTGAAGATTCATGGCTCCGTATGATTTTTCAATTGAAGGAAAAATGGGCATGGGCGTATGTTCGAAAACATTTCACTGCAGGTATGAGATCTACTCAAATAAGTGAGAGTTTTAATGCTGAGTTGAAAAATTATTTGAAGTCAGATTTAAATTTAGTTCAATTTTTCACACACCTTGAAAGGGTTGTCCATGGAATACGGAACAATGAATCAGAGGCCGATTATGAGTCAAGACATGAGTTGCCTAAATTGAAAATGAAAAGGGCTCCTATGCTTGTACAAGCCGGAAACATTTACACTCCAAAAACCTTTGAGGAATTTCAAGAAGAATATGAGGAATATCTAGGCACTTGCGTAAAGAATTTGAAAGAAGGGTTGTATGCTGTTACAAATTATGATAATAATAAGGAGCGGACGGTAATGGGGAATCTTATGGATCAAAAGGTTGTCTGTGATTGTCGTAAATTTGAGACACATGGCATCTTATGCAGTCATGCTTTGAAAGTATTAGATGTTATGAATATTAAGCTGATTCCTCAACACTATATACTGAAGCGATGGACAAGAGATGCAAGATTGGGAAGTAATCAAGATTTGGAAGGGCAACCTATTGAACTGGATATAAAAGCTCATTTCATGAGGCGATACAACGAGTTATGTCCTCAAATGGTTAAATTGATCAACAAAGCATCAAAATCTCACGAAACTTACACATTTTTATCCAAAGTTTTTGAAGAGTCTAATAAAATAATTGATGATATGTTGGCTAAAAAGTTCGTGGGGGCAGAATCACTTGAGCTGTGTCATGTATCCATACCAATTGGCACGGAAAAAAGTGACAACAATGTCAACACTCTGGATGTTGGTGGGGAGCAGGAGTTGCGAATTCTAGGTGATGGTCGTATGGATTCCCTGATGAACATTGGAGAGTCATTGCTTCCGACTTCTCTCGTATAG
Protein sequence

>Msa0395940

MKKGHTLFFNLKASVERVPPHRAVPPFLPNTQPPHMSSVSGNMNGSTIPIVEGVEKLGNNIDVNIVQNGEESVVDYTPHLEMEFESEAAAYEFYNKYSRRIGFGIRREYGNKSRKDGVLTSRRFTCFKEGKRGVDKRDHLTKEGRVETRTGCDACMVISLDRKIGKYKVVDFVAQHNHLLEPPGYFHTPRSHRQISESRLSQVVAADESGLKRKDFHEYVYKQDGGIDAVGYLRTKRMRSLMYGEVGALLMHFKRQSENPSFFYDFQMDVEEQITNVFWADAQMINDYGYFGDVITFDTTYMTNKDYRPLGVFVGLNNHKQMVVFGATLLYDQTIPSFQWLFETFLKAMGGEKPKTLLTDQHVTMAKAISLVMPETFHGLCTWRMRENAQRHVNHLYQESSKFCSDFEACIDLHEEEGVFLNAWNVLLVEHNVSEDSWLRMIFQLKEKWAWAYVRKHFTAGMRSTQISESFNAELKNYLKSDLNLVQFFTHLERVVHGIRNNESEADYESRHELPKLKMKRAPMLVQAGNIYTPKTFEEFQEEYEEYLGTCVKNLKEGLYAVTNYDNNKERTVMGNLMDQKVVCDCRKFETHGILCSHALKVLDVMNIKLIPQHYILKRWTRDARLGSNQDLEGQPIELDIKAHFMRRYNELCPQMVKLINKASKSHETYTFLSKVFEESNKIIDDMLAKKFVGAESLELCHVSIPIGTEKSDNNVNTLDVGGEQELRILGDGRMDSLMNIGESLLPTSLV*