AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0102270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102270 MtrunA17_Chr1g0156471 96.815 471 15 0 5 475 1 471 0.0 944
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102270 AT5G01310.1 61.373 466 148 5 15 480 23 456 0.0 578

Find 124 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAAAGCCTTCACTTAATT+TGG 0.070308 1_3:+9036994 None:intergenic
CAACTGCATGGATATCTATT+TGG 0.167991 1_3:+9037140 None:intergenic
CGCAGATGCAAAACCCATTT+TGG 0.177970 1_3:-9038494 Msa0102270:intron
TCACGCCTACACTATTATTT+TGG 0.188705 1_3:-9038753 Msa0102270:five_prime_UTR
CATTATACTAGATTGGATTT+TGG 0.192997 1_3:+9036856 None:intergenic
CAACATGGGTAAAGAACTTC+TGG 0.235682 1_3:+9036414 None:intergenic
ACCAACTAAGATTACCAAAA+TGG 0.255360 1_3:+9038480 None:intergenic
TAATCATTGTTCAGACAATT+TGG 0.269486 1_3:+9035309 None:intergenic
CGAGATTCTTGTTCTTGTTC+AGG 0.281395 1_3:+9038671 None:intergenic
GGTCTTTGTGGATTCATATT+AGG 0.285029 1_3:+9035330 None:intergenic
GAGTTGTGATGTGTCACTTT+TGG 0.286916 1_3:+9038709 None:intergenic
TATAATGAAATTCCTGAAAA+AGG 0.291515 1_3:-9036840 Msa0102270:CDS
TGCGTTCCTCTTCTCGCACC+TGG 0.293905 1_3:-9038417 Msa0102270:CDS
GCGCATGCTAATTCCAAGTT+AGG 0.313836 1_3:-9036707 Msa0102270:CDS
CACCCTGACAAAATGTTATT+CGG 0.326546 1_3:+9036972 None:intergenic
TCTCGATCTGTTAAACGATC+TGG 0.327806 1_3:-9037088 Msa0102270:CDS
TTCAGACAATTTGGTCTTTG+TGG 0.329030 1_3:+9035318 None:intergenic
GACTCTACTTCCCAGACTTC+TGG 0.329410 1_3:-9036773 Msa0102270:CDS
CTGCCTTGTCATGGTTGAAT+TGG 0.331343 1_3:+9036573 None:intergenic
AGTGAGATTCTTCGGTAAAT+AGG 0.333734 1_3:+9032891 None:intergenic
TTGGTTGCAGACTCCAGTTC+AGG 0.336397 1_3:+9035462 None:intergenic
GGAATTTCATTATACTAGAT+TGG 0.340534 1_3:+9036849 None:intergenic
TTAAAGCCTTCACTTAATTT+GGG 0.349736 1_3:+9036995 None:intergenic
AAGGTGGATTTCCCGCTTCC+AGG 0.350962 1_3:+9038454 None:intergenic
AACCTTTCACATGGCTGCTT+CGG 0.364818 1_3:-9036896 Msa0102270:CDS
CTATTGCTTTAGGACACTAT+TGG 0.364954 1_3:-9037301 Msa0102270:intron
ATCACTCGCCTTTATTCAAC+TGG 0.366524 1_3:-9036386 Msa0102270:CDS
AACTGCATGGATATCTATTT+GGG 0.366972 1_3:+9037141 None:intergenic
CACCTGGGTTCGCGTTTGTC+AGG 0.384918 1_3:-9038401 Msa0102270:intron
TGGAATTAGCATGCGCTGTT+GGG 0.385424 1_3:+9036714 None:intergenic
AAATCTGCTGTTGAAATAGA+TGG 0.385657 1_3:+9036596 None:intergenic
GCAAACCTCCAGTTGAATAA+AGG 0.388247 1_3:+9036378 None:intergenic
TGATTCCCTCTGCAAAGATA+TGG 0.394356 1_3:-9036744 Msa0102270:CDS
GACATGGGTCACACCTTCTC+TGG 0.401712 1_3:+9035368 None:intergenic
CCAACTAAGATTACCAAAAT+GGG 0.422030 1_3:+9038481 None:intergenic
TGATGCCGCAGGTCCTGAAC+TGG 0.422054 1_3:-9035475 Msa0102270:CDS
TAGTGCAGCTAGAGCATTGA+AGG 0.422729 1_3:-9037242 Msa0102270:CDS
TGCCGCTTTGGATTTAACTA+AGG 0.423436 1_3:+9036454 None:intergenic
TCTTTAGATGCAGTATCAAC+TGG 0.427580 1_3:+9036809 None:intergenic
CGAGAAATACACAGCTTAGC+AGG 0.436953 1_3:+9037106 None:intergenic
CAGAAGTTCTTTACCCATGT+TGG 0.449612 1_3:-9036413 Msa0102270:CDS
GCTTATGCATCACTATTTGA+AGG 0.454340 1_3:-9035258 Msa0102270:CDS
ATAACGAGAGTGAGATTCTT+CGG 0.456128 1_3:+9032883 None:intergenic
TTGGAATTAGCATGCGCTGT+TGG 0.457695 1_3:+9036713 None:intergenic
CTTGTTCAGGATTCTATGAT+CGG 0.464970 1_3:+9038684 None:intergenic
CTCGATCTGTTAAACGATCT+GGG 0.465731 1_3:-9037087 Msa0102270:CDS
TCTTGATGATATTCCGACTC+TGG 0.466974 1_3:-9036624 Msa0102270:CDS
TGCAGAGTACTCAAATAAGA+TGG 0.475710 1_3:-9036528 Msa0102270:CDS
AGCAGATATTATTGTTGAGA+AGG 0.477645 1_3:-9036552 Msa0102270:CDS
CAAGTCAACTAGAACAAGTC+TGG 0.479496 1_3:+9036499 None:intergenic
ATGCTCTAGCTGCACTACTT+AGG 0.487592 1_3:+9037248 None:intergenic
CGACTGAAACCTGGCGGTGG+AGG 0.488427 1_3:-9035516 Msa0102270:CDS
CTTTAGGACACTATTGGAAA+CGG 0.488697 1_3:-9037295 Msa0102270:intron
CAGCTAGAGCATTGAAGGAT+GGG 0.492858 1_3:-9037237 Msa0102270:CDS
GTAATCTTAGTTGGTGCACC+TGG 0.497340 1_3:-9038472 Msa0102270:CDS
TCTCCTTTGTTCACCAGAGA+AGG 0.497892 1_3:-9035381 Msa0102270:CDS
TTAGTTGGTGCACCTGGAAG+CGG 0.499378 1_3:-9038466 Msa0102270:CDS
AAGAGGCTGCAAGGTTCTCC+AGG 0.499868 1_3:-9035283 Msa0102270:CDS
GCGAGTGATGTCTCCAACAT+GGG 0.513703 1_3:+9036400 None:intergenic
TTAGGGTCAAAAGATATAGA+AGG 0.514351 1_3:-9036689 Msa0102270:CDS
GTGGATTCATATTAGGTCCA+AGG 0.518443 1_3:+9035337 None:intergenic
AAGAGAAACTTGATTGTGAC+AGG 0.518643 1_3:+9036643 None:intergenic
CTGAACAATGATTATGAAAG+AGG 0.518865 1_3:-9035300 Msa0102270:CDS
TAGTTGGTGCACCTGGAAGC+GGG 0.522269 1_3:-9038465 Msa0102270:CDS
GGAAGAGTGTATTCATTGAC+AGG 0.523105 1_3:-9037216 Msa0102270:CDS
ATTTGCAGGCGACTGAAACC+TGG 0.527138 1_3:-9035525 Msa0102270:intron
GCAGAGTACTCAAATAAGAT+GGG 0.527394 1_3:-9036527 Msa0102270:CDS
CGCATGCTAATTCCAAGTTA+GGG 0.528744 1_3:-9036706 Msa0102270:CDS
GCGTTCCTCTTCTCGCACCT+GGG 0.532165 1_3:-9038416 Msa0102270:CDS
AAAGGAGAAGATGAAGGTAG+AGG 0.537684 1_3:+9035396 None:intergenic
GGTCAGACTGATAAATCTGC+TGG 0.543721 1_3:-9036668 Msa0102270:CDS
CATGGACATGGACATGGACA+TGG 0.545411 1_3:-9038640 Msa0102270:CDS
ACCCATGTCATACATGTCCT+TGG 0.547057 1_3:-9035354 Msa0102270:CDS
GCATCTAAAGAAAATACCAT+TGG 0.549466 1_3:-9036797 Msa0102270:CDS
TTCGAACATGGACATGGACA+TGG 0.549674 1_3:-9038646 Msa0102270:exon
ACTATTGGAAACGGTAAAGC+AGG 0.551394 1_3:-9037286 Msa0102270:CDS
GTTAAACGATCTGGGCATGA+AGG 0.553439 1_3:-9037079 Msa0102270:CDS
GCATTGACACCTCCACCGCC+AGG 0.557019 1_3:+9035507 None:intergenic
TCATTGCAAATGCTGCGAAC+TGG 0.559496 1_3:-9036346 Msa0102270:intron
GGAAACCTTTGTTGTTGTCG+AGG 0.561531 1_3:+9038616 None:intergenic
ATAGTGATGCATAAGCATCC+TGG 0.561975 1_3:+9035265 None:intergenic
GCAGCTAGAGCATTGAAGGA+TGG 0.563714 1_3:-9037238 Msa0102270:CDS
CATAACCTCTTCACAGAAGG+TGG 0.564702 1_3:+9038438 None:intergenic
GCGAACCCAGGTGCGAGAAG+AGG 0.566181 1_3:+9038411 None:intergenic
CTCGTATTCGAACATGGACA+TGG 0.566252 1_3:-9038652 Msa0102270:exon
TTTGTCCATATCTTTGCAGA+GGG 0.569456 1_3:+9036739 None:intergenic
AAAGCAAAGACTCTTTCACC+TGG 0.571665 1_3:-9035435 Msa0102270:CDS
GGCGAGTGATGTCTCCAACA+TGG 0.576042 1_3:+9036399 None:intergenic
AAGGAGAAGATGAAGGTAGA+GGG 0.576283 1_3:+9035397 None:intergenic
AACATGGGTAAAGAACTTCT+GGG 0.584861 1_3:+9036415 None:intergenic
TAATATCTGCTGCCTTGTCA+TGG 0.588066 1_3:+9036564 None:intergenic
GGGACGACAACAGCATTCCC+AGG 0.588798 1_3:+9035417 None:intergenic
GTCCAAGGACATGTATGACA+TGG 0.597354 1_3:+9035352 None:intergenic
AACCTGACAAACGCGAACCC+AGG 0.598184 1_3:+9038399 None:intergenic
GACCGAAGCAGCCATGTGAA+AGG 0.599956 1_3:+9036894 None:intergenic
AAGAATCTCGTATTCGAACA+TGG 0.601349 1_3:-9038658 Msa0102270:exon
GTGAACAAAGGAGAAGATGA+AGG 0.601999 1_3:+9035390 None:intergenic
TGCATCAATTGTTAGGAACA+CGG 0.604743 1_3:-9035232 Msa0102270:intron
TGATTATGAAAGAGGCTGCA+AGG 0.604953 1_3:-9035292 Msa0102270:CDS
ACTCGCCTTTATTCAACTGG+AGG 0.605047 1_3:-9036383 Msa0102270:CDS
AGGCGACTGAAACCTGGCGG+TGG 0.612279 1_3:-9035519 Msa0102270:CDS
GCACACCAAAATAATAGTGT+AGG 0.615060 1_3:+9038748 None:intergenic
GAGTTGCCCAAATTAAGTGA+AGG 0.616122 1_3:-9037001 Msa0102270:CDS
ATAGATGGAAATGCCAGAGT+CGG 0.616187 1_3:+9036611 None:intergenic
ACGCATAACCTCTTCACAGA+AGG 0.623531 1_3:+9038435 None:intergenic
GAAGGTCAAGTACAACTGCA+TGG 0.626377 1_3:+9037128 None:intergenic
AAATACACAGCTTAGCAGGA+AGG 0.627877 1_3:+9037110 None:intergenic
CCACTGGAGAACCTTTCACA+TGG 0.631497 1_3:-9036905 Msa0102270:CDS
GTTCAGGATTCTATGATCGG+AGG 0.631846 1_3:+9038687 None:intergenic
ACACCTTCTCTGGTGAACAA+AGG 0.638418 1_3:+9035378 None:intergenic
GGGCATGAAGGAAATTTGCA+AGG 0.641797 1_3:-9037067 Msa0102270:CDS
CTGGGAAGTAGAGTCTCCAA+TGG 0.644193 1_3:+9036781 None:intergenic
GTCCTTAGTTAAATCCAAAG+CGG 0.648704 1_3:-9036456 Msa0102270:CDS
GAAATCCACCTTCTGTGAAG+AGG 0.649778 1_3:-9038443 Msa0102270:CDS
CAGAGTACTCAAATAAGATG+GGG 0.650521 1_3:-9036526 Msa0102270:CDS
AAGCAAAGACTCTTTCACCT+GGG 0.653354 1_3:-9035434 Msa0102270:CDS
TCCAAGGACATGTATGACAT+GGG 0.655879 1_3:+9035353 None:intergenic
AGACTCCAGTTCAGGACCTG+CGG 0.667051 1_3:+9035470 None:intergenic
TTTCCAATTCAACCATGACA+AGG 0.670098 1_3:-9036576 Msa0102270:CDS
ATGGACCTCGACAACAACAA+AGG 0.670502 1_3:-9038621 Msa0102270:intron
CCATGTGAAAGGTTCTCCAG+TGG 0.675910 1_3:+9036905 None:intergenic
TGCAGGCGACTGAAACCTGG+CGG 0.712644 1_3:-9035522 Msa0102270:intron
CATGAAGGAAATTTGCAAGG+TGG 0.718134 1_3:-9037064 Msa0102270:CDS
GCAATCTTAATAGAGAACAG+CGG 0.774151 1_3:-9037192 Msa0102270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! NNNNNNNNNNTCAAGTATTA+TGG - chr1_3:9036584-9036603 Msa0102270:CDS 10.0%
!! NNNNNNNNNTCAAGTATTAT+GGG - chr1_3:9036585-9036604 Msa0102270:CDS 10.0%
!!! TATATGTTATATTATAGTTT+TGG - chr1_3:9037235-9037254 Msa0102270:CDS 10.0%
!! AAAACGAAAAAAAATTTAAA+GGG + chr1_3:9037323-9037342 None:intergenic 10.0%
!! TAAAACGAAAAAAAATTTAA+AGG + chr1_3:9037324-9037343 None:intergenic 10.0%
!!! AATTTTTTTTCGTTTTATTT+TGG - chr1_3:9037327-9037346 Msa0102270:intron 10.0%
!! ATTATTGAAATTAAAATTGT+TGG + chr1_3:9038579-9038598 None:intergenic 10.0%
!!! ATAGTTTTCAACTTAATTAA+TGG + chr1_3:9033353-9033372 None:intergenic 15.0%
!! ATTACAAAAACATAATAGAA+TGG + chr1_3:9033531-9033550 None:intergenic 15.0%
!! NNNNNNNNTCAAGTATTATG+GGG - chr1_3:9036586-9036605 Msa0102270:CDS 15.0%
!!! GAAATTTTGATTAAGATTAT+AGG - chr1_3:9036840-9036859 Msa0102270:CDS 15.0%
!!! ATAAACTATTTTTTTTAGTG+AGG - chr1_3:9036898-9036917 Msa0102270:CDS 15.0%
!!! TAAACTATTTTTTTTAGTGA+GGG - chr1_3:9036899-9036918 Msa0102270:CDS 15.0%
!!! TATTATATTTGTTATAGTGT+TGG + chr1_3:9036958-9036977 None:intergenic 15.0%
!!! TAAAGAAAATAGATGATTTT+TGG + chr1_3:9037069-9037088 None:intergenic 15.0%
!!! TGTTTTTTTTTTCTTCATTT+TGG + chr1_3:9037492-9037511 None:intergenic 15.0%
!!! TTTTTAATATTAAAAGTGTG+CGG - chr1_3:9038030-9038049 Msa0102270:intron 15.0%
!!! TTTTTGCCTTTTCTTTTTAA+TGG - chr1_3:9033317-9033336 Msa0102270:intron 20.0%
!! TTCTGAATCTTTACTAATAT+TGG - chr1_3:9034300-9034319 Msa0102270:intron 20.0%
!! ATTGATACATATCAAAAACT+TGG - chr1_3:9034708-9034727 Msa0102270:intron 20.0%
!! TTGATACATATCAAAAACTT+GGG - chr1_3:9034709-9034728 Msa0102270:intron 20.0%
!! TATAATGAAATTCCTGAAAA+AGG - chr1_3:9034797-9034816 Msa0102270:intron 20.0%
!! AATTATGTTCTTGTTAACAT+AGG - chr1_3:9036718-9036737 Msa0102270:CDS 20.0%
!! TTTGATTAAGATTATAGGTA+TGG - chr1_3:9036845-9036864 Msa0102270:CDS 20.0%
!!! TCATAGTCAAATTTGTTTAA+GGG - chr1_3:9037019-9037038 Msa0102270:CDS 20.0%
!!! AATTTGTTTAAGGGTATAAT+TGG - chr1_3:9037028-9037047 Msa0102270:CDS 20.0%
!! AGATATCATTTGTAACTTAA+CGG + chr1_3:9037293-9037312 None:intergenic 20.0%
!! GTTACAAATGATATCTAATT+TGG - chr1_3:9037297-9037316 Msa0102270:intron 20.0%
!!! TTTTAATATTAAAAGTGTGC+GGG - chr1_3:9038031-9038050 Msa0102270:intron 20.0%
!! TTGAATAATAAGGGTAAATA+TGG + chr1_3:9038362-9038381 None:intergenic 20.0%
!! TAGTTGTAAACTTTGTATTA+TGG - chr1_3:9038489-9038508 Msa0102270:CDS 20.0%
!! AGTTGTAAACTTTGTATTAT+GGG - chr1_3:9038490-9038509 Msa0102270:CDS 20.0%
!!! TTTTAATTCTATCAATCAAG+TGG - chr1_3:9038665-9038684 Msa0102270:five_prime_UTR 20.0%
! ACATATATGAGAATGAATCA+TGG - chr1_3:9033081-9033100 Msa0102270:intron 25.0%
! CAGTTACCATTAAAAAGAAA+AGG + chr1_3:9033326-9033345 None:intergenic 25.0%
! TAAAGTAGTGTTTAATAGAC+AGG + chr1_3:9033896-9033915 None:intergenic 25.0%
! TTTGGAAGTTTGTATTATGA+GGG - chr1_3:9034145-9034164 Msa0102270:intron 25.0%
! AATAAAACTCACAAAAACTG+AGG + chr1_3:9034206-9034225 None:intergenic 25.0%
!!! CAGTTTTTGTGAGTTTTATT+AGG - chr1_3:9034206-9034225 Msa0102270:intron 25.0%
! TACTTTCTTTCTATTGCTTT+AGG - chr1_3:9034326-9034345 Msa0102270:intron 25.0%
! TTAAAGCCTTCACTTAATTT+GGG + chr1_3:9034645-9034664 None:intergenic 25.0%
!! CATTATACTAGATTGGATTT+TGG + chr1_3:9034784-9034803 None:intergenic 25.0%
! GGAATTTCATTATACTAGAT+TGG + chr1_3:9034791-9034810 None:intergenic 25.0%
! GAATTCAAAAATTGTATTGG+AGG + chr1_3:9035682-9035701 None:intergenic 25.0%
! AGGGAATTCAAAAATTGTAT+TGG + chr1_3:9035685-9035704 None:intergenic 25.0%
! TGGAAAAAATAGAGAACTTT+GGG + chr1_3:9035758-9035777 None:intergenic 25.0%
! TGAAAATATATTCTATCCCT+GGG + chr1_3:9036012-9036031 None:intergenic 25.0%
! TGAAATGAAAAAACATTTGC+AGG - chr1_3:9036098-9036117 Msa0102270:intron 25.0%
! TAATCATTGTTCAGACAATT+TGG + chr1_3:9036331-9036350 None:intergenic 25.0%
!! CTATGAGAAAACTATTTTGT+CGG + chr1_3:9037005-9037024 None:intergenic 25.0%
!! CTCATAGTCAAATTTGTTTA+AGG - chr1_3:9037018-9037037 Msa0102270:CDS 25.0%
!!! GATTAAAGACTTTTGTTGTT+AGG - chr1_3:9037100-9037119 Msa0102270:CDS 25.0%
! CTTGAAATAATACTCAAAGA+GGG - chr1_3:9037153-9037172 Msa0102270:CDS 25.0%
! TTGAAATAATACTCAAAGAG+GGG - chr1_3:9037154-9037173 Msa0102270:CDS 25.0%
! AAACACAAAAAACTCACAAT+AGG - chr1_3:9037507-9037526 Msa0102270:intron 25.0%
! ACAATAGGTATATAAGAAAG+AGG - chr1_3:9037522-9037541 Msa0102270:intron 25.0%
! CAATAGGTATATAAGAAAGA+GGG - chr1_3:9037523-9037542 Msa0102270:intron 25.0%
! AATAGGTATATAAGAAAGAG+GGG - chr1_3:9037524-9037543 Msa0102270:intron 25.0%
!!! ATGTAGTAGATTACTTTTGA+AGG - chr1_3:9037621-9037640 Msa0102270:intron 25.0%
! TGACACACTTTAGATTATAT+CGG + chr1_3:9037696-9037715 None:intergenic 25.0%
! AAAAAGTTATCTCAAGTTAG+TGG - chr1_3:9037737-9037756 Msa0102270:intron 25.0%
!! GTTATTGATAGTTGATTAGT+GGG + chr1_3:9037989-9038008 None:intergenic 25.0%
!! AGTTATTGATAGTTGATTAG+TGG + chr1_3:9037990-9038009 None:intergenic 25.0%
!! TTTTTCTATAAAGCTCTGTT+TGG - chr1_3:9038213-9038232 Msa0102270:intron 25.0%
!!! GCTTTTGCTTTGAATAATAA+GGG + chr1_3:9038371-9038390 None:intergenic 25.0%
!!! AGCTTTTGCTTTGAATAATA+AGG + chr1_3:9038372-9038391 None:intergenic 25.0%
! TACAAAGTTTACAACTACTT+AGG + chr1_3:9038486-9038505 None:intergenic 25.0%
! AATGAATTAAAGAACTCAAG+TGG + chr1_3:9038700-9038719 None:intergenic 25.0%
CCAACTAAGATTACCAAAAT+GGG + chr1_3:9033159-9033178 None:intergenic 30.0%
ACCAACTAAGATTACCAAAA+TGG + chr1_3:9033160-9033179 None:intergenic 30.0%
! TTAATCTGTGTTGTTCTCTT+TGG - chr1_3:9033454-9033473 Msa0102270:intron 30.0%
!!! CTTTGGTTTCACTTTTTCAT+TGG - chr1_3:9033471-9033490 Msa0102270:intron 30.0%
GTATGAAAATATCCAAGATC+AGG + chr1_3:9033722-9033741 None:intergenic 30.0%
! TTTTCATACACGCCTATATT+TGG - chr1_3:9033733-9033752 Msa0102270:intron 30.0%
GAAGATCCTATGCAATTTAT+GGG - chr1_3:9033755-9033774 Msa0102270:intron 30.0%
!!! TGTTTTTGGATTGAGGATAA+GGG - chr1_3:9034074-9034093 Msa0102270:intron 30.0%
GTTTGGAAGTTTGTATTATG+AGG - chr1_3:9034144-9034163 Msa0102270:intron 30.0%
CCAAGAGATTATTATAGTTG+CGG + chr1_3:9034237-9034256 None:intergenic 30.0%
!!! GGTCAGATTTTTTAAAGCTT+CGG - chr1_3:9034466-9034485 Msa0102270:intron 30.0%
!!! GTCAGATTTTTTAAAGCTTC+GGG - chr1_3:9034467-9034486 Msa0102270:intron 30.0%
!!! TCAGATTTTTTAAAGCTTCG+GGG - chr1_3:9034468-9034487 Msa0102270:intron 30.0%
AACTGCATGGATATCTATTT+GGG + chr1_3:9034499-9034518 None:intergenic 30.0%
GTTAAAGCCTTCACTTAATT+TGG + chr1_3:9034646-9034665 None:intergenic 30.0%
! TAACCGAATAACATTTTGTC+AGG - chr1_3:9034662-9034681 Msa0102270:intron 30.0%
! AACCGAATAACATTTTGTCA+GGG - chr1_3:9034663-9034682 Msa0102270:intron 30.0%
GCATCTAAAGAAAATACCAT+TGG - chr1_3:9034840-9034859 Msa0102270:intron 30.0%
!!! ATCATTTTTTCCAGAAGTCT+GGG + chr1_3:9034877-9034896 None:intergenic 30.0%
!!! AATCATTTTTTCCAGAAGTC+TGG + chr1_3:9034878-9034897 None:intergenic 30.0%
! TATATCTTTTGACCCTAACT+TGG + chr1_3:9034946-9034965 None:intergenic 30.0%
TTAGGGTCAAAAGATATAGA+AGG - chr1_3:9034948-9034967 Msa0102270:intron 30.0%
AAATCTGCTGTTGAAATAGA+TGG + chr1_3:9035044-9035063 None:intergenic 30.0%
AGCAGATATTATTGTTGAGA+AGG - chr1_3:9035085-9035104 Msa0102270:intron 30.0%
! TATGATATGCTGTGTGTTTT+AGG - chr1_3:9035439-9035458 Msa0102270:CDS 30.0%
TCAAAAATTGTATTGGAGGA+GGG + chr1_3:9035678-9035697 None:intergenic 30.0%
TTCAAAAATTGTATTGGAGG+AGG + chr1_3:9035679-9035698 None:intergenic 30.0%
! TTTTTGAATTCCCTGAAATG+AGG - chr1_3:9035691-9035710 Msa0102270:intron 30.0%
CATAATTTCTCCTCATTTCA+GGG + chr1_3:9035704-9035723 None:intergenic 30.0%
TCATAATTTCTCCTCATTTC+AGG + chr1_3:9035705-9035724 None:intergenic 30.0%
GTGGAAAAAATAGAGAACTT+TGG + chr1_3:9035759-9035778 None:intergenic 30.0%
ATCACATACGAAAAAGTGAT+AGG + chr1_3:9035924-9035943 None:intergenic 30.0%
!!! TTAGTTTTAACTCATTTCCC+AGG - chr1_3:9035992-9036011 Msa0102270:intron 30.0%
!!! TAGTTTTAACTCATTTCCCA+GGG - chr1_3:9035993-9036012 Msa0102270:intron 30.0%
CTGAAAATATATTCTATCCC+TGG + chr1_3:9036013-9036032 None:intergenic 30.0%
!!! TAAACCTGTCATTTTTCACA+TGG - chr1_3:9036066-9036085 Msa0102270:intron 30.0%
!!! AAGAGTCTTTGCTTTTTCTT+TGG + chr1_3:9036197-9036216 None:intergenic 30.0%
CTGAACAATGATTATGAAAG+AGG - chr1_3:9036337-9036356 Msa0102270:intron 30.0%
! AAGGTTTTGCATCAATTGTT+AGG - chr1_3:9036398-9036417 Msa0102270:CDS 30.0%
GTACATCAAAATGAAAACCT+TGG - chr1_3:9036427-9036446 Msa0102270:CDS 30.0%
AAACCTTGGAAAAAAGTCTT+TGG - chr1_3:9036441-9036460 Msa0102270:CDS 30.0%
CATTAACGCAATAAAAAGAG+CGG + chr1_3:9036791-9036810 None:intergenic 30.0%
GCTTGAAATAATACTCAAAG+AGG - chr1_3:9037152-9037171 Msa0102270:CDS 30.0%
GAAATCTAACTGCAACTTAA+AGG + chr1_3:9037262-9037281 None:intergenic 30.0%
ATAAGAAAGAGGGGTAAAAA+TGG - chr1_3:9037533-9037552 Msa0102270:intron 30.0%
TAAGAAAGAGGGGTAAAAAT+GGG - chr1_3:9037534-9037553 Msa0102270:intron 30.0%
TCAATTAGATTTCCTTCAAG+TGG + chr1_3:9037595-9037614 None:intergenic 30.0%
TCTCACACAAAGTTCTTAAA+TGG - chr1_3:9037961-9037980 Msa0102270:intron 30.0%
CTCACACAAAGTTCTTAAAT+GGG - chr1_3:9037962-9037981 Msa0102270:intron 30.0%
!!! TTTGGGGAATTTTTTTTTGG+GGG + chr1_3:9038105-9038124 None:intergenic 30.0%
!!! CTTTGGGGAATTTTTTTTTG+GGG + chr1_3:9038106-9038125 None:intergenic 30.0%
!!! CCTTTGGGGAATTTTTTTTT+GGG + chr1_3:9038107-9038126 None:intergenic 30.0%
CCAAAAAAAAATTCCCCAAA+GGG - chr1_3:9038105-9038124 Msa0102270:intron 30.0%
CAAAAAAAAATTCCCCAAAG+GGG - chr1_3:9038106-9038125 Msa0102270:intron 30.0%
TTATGAAAACATGGAACGTA+TGG - chr1_3:9038183-9038202 Msa0102270:intron 30.0%
GTAAACTTTGTATTATGGGT+TGG - chr1_3:9038494-9038513 Msa0102270:intron 30.0%
TCCAGTGTTCACAAATTAAT+GGG - chr1_3:9038540-9038559 Msa0102270:intron 30.0%
! TCACGCCTACACTATTATTT+TGG - chr1_3:9032884-9032903 Msa0102270:CDS 35.0%
GCACACCAAAATAATAGTGT+AGG + chr1_3:9032892-9032911 None:intergenic 35.0%
!!! AGTTGTGATGTGTCACTTTT+GGG + chr1_3:9032930-9032949 None:intergenic 35.0%
CTTGTTCAGGATTCTATGAT+CGG + chr1_3:9032956-9032975 None:intergenic 35.0%
AAGAATCTCGTATTCGAACA+TGG - chr1_3:9032979-9032998 Msa0102270:intron 35.0%
AGAATGAGGAAGGTTATAGA+AGG + chr1_3:9033045-9033064 None:intergenic 35.0%
GAATATAGAGAGAGAGAATG+AGG + chr1_3:9033059-9033078 None:intergenic 35.0%
!! CCCATTTTGGTAATCTTAGT+TGG - chr1_3:9033156-9033175 Msa0102270:intron 35.0%
GCATAGGATCTTCCAAATAT+AGG + chr1_3:9033748-9033767 None:intergenic 35.0%
GGAAGATCCTATGCAATTTA+TGG - chr1_3:9033754-9033773 Msa0102270:intron 35.0%
AGAACACCCATAAATTGCAT+AGG + chr1_3:9033764-9033783 None:intergenic 35.0%
AGAACACGCATTAATTGCTT+AGG + chr1_3:9034026-9034045 None:intergenic 35.0%
!! TTCTATTTCTAGTCTGCTTG+AGG - chr1_3:9034042-9034061 Msa0102270:intron 35.0%
!! TCTATTTCTAGTCTGCTTGA+GGG - chr1_3:9034043-9034062 Msa0102270:intron 35.0%
!!! TTCTAGGTGTTTTTGGATTG+AGG - chr1_3:9034067-9034086 Msa0102270:intron 35.0%
!!! GTGTTTTTGGATTGAGGATA+AGG - chr1_3:9034073-9034092 Msa0102270:intron 35.0%
GAAGTTTGTATTATGAGGGA+AGG - chr1_3:9034149-9034168 Msa0102270:intron 35.0%
CCGCAACTATAATAATCTCT+TGG - chr1_3:9034234-9034253 Msa0102270:intron 35.0%
!! CTATTGCTTTAGGACACTAT+TGG - chr1_3:9034336-9034355 Msa0102270:intron 35.0%
!! CTTTAGGACACTATTGGAAA+CGG - chr1_3:9034342-9034361 Msa0102270:intron 35.0%
GCAATCTTAATAGAGAACAG+CGG - chr1_3:9034445-9034464 Msa0102270:intron 35.0%
CAACTGCATGGATATCTATT+TGG + chr1_3:9034500-9034519 None:intergenic 35.0%
CACCCTGACAAAATGTTATT+CGG + chr1_3:9034668-9034687 None:intergenic 35.0%
!!! CTAGATTGGATTTTGGAATC+TGG + chr1_3:9034777-9034796 None:intergenic 35.0%
GAAATTCCTGAAAAAGGTAG+AGG - chr1_3:9034803-9034822 Msa0102270:intron 35.0%
TCTTTAGATGCAGTATCAAC+TGG + chr1_3:9034831-9034850 None:intergenic 35.0%
TTTGTCCATATCTTTGCAGA+GGG + chr1_3:9034901-9034920 None:intergenic 35.0%
! TTTTGTCCATATCTTTGCAG+AGG + chr1_3:9034902-9034921 None:intergenic 35.0%
AAGAGAAACTTGATTGTGAC+AGG + chr1_3:9034997-9035016 None:intergenic 35.0%
TTTCCAATTCAACCATGACA+AGG - chr1_3:9035061-9035080 Msa0102270:intron 35.0%
! TGCAGAGTACTCAAATAAGA+TGG - chr1_3:9035109-9035128 Msa0102270:intron 35.0%
! GCAGAGTACTCAAATAAGAT+GGG - chr1_3:9035110-9035129 Msa0102270:intron 35.0%
! CAGAGTACTCAAATAAGATG+GGG - chr1_3:9035111-9035130 Msa0102270:intron 35.0%
GTCCTTAGTTAAATCCAAAG+CGG - chr1_3:9035181-9035200 Msa0102270:intron 35.0%
AACATGGGTAAAGAACTTCT+GGG + chr1_3:9035225-9035244 None:intergenic 35.0%
CTAACTATCTACTTCAGCAT+TGG + chr1_3:9035362-9035381 None:intergenic 35.0%
!!! TGTGTGTTTTAGGCTTTGTT+TGG - chr1_3:9035449-9035468 Msa0102270:CDS 35.0%
!!! GTGTGTTTTAGGCTTTGTTT+GGG - chr1_3:9035450-9035469 Msa0102270:CDS 35.0%
TTTGGGTGGTAGGAAATATA+GGG - chr1_3:9035495-9035514 Msa0102270:CDS 35.0%
! AAAATAGAGAACTTTGGGAG+AGG + chr1_3:9035753-9035772 None:intergenic 35.0%
!! GAGGGTTTTTGAAAAAAGGA+AGG + chr1_3:9035787-9035806 None:intergenic 35.0%
TTAACAGAAACCTCCTATTG+TGG + chr1_3:9035866-9035885 None:intergenic 35.0%
TGCGATCAAATTCTAGACTA+AGG - chr1_3:9035898-9035917 Msa0102270:intron 35.0%
CAATAAGCAAGCTTAAGCAT+TGG + chr1_3:9035960-9035979 None:intergenic 35.0%
!! TCATTTTTCACATGGTCTCT+TGG - chr1_3:9036074-9036093 Msa0102270:intron 35.0%
GGTCTTTGTGGATTCATATT+AGG + chr1_3:9036310-9036329 None:intergenic 35.0%
! TTCAGACAATTTGGTCTTTG+TGG + chr1_3:9036322-9036341 None:intergenic 35.0%
GCTTATGCATCACTATTTGA+AGG - chr1_3:9036379-9036398 Msa0102270:CDS 35.0%
TGCATCAATTGTTAGGAACA+CGG - chr1_3:9036405-9036424 Msa0102270:CDS 35.0%
!!! ACTCCAAAGACTTTTTTCCA+AGG + chr1_3:9036447-9036466 None:intergenic 35.0%
TTTATAATCGGTGAGAAGCT+CGG + chr1_3:9036652-9036671 None:intergenic 35.0%
AATAAAAAGAGCGGACAAAC+GGG + chr1_3:9036782-9036801 None:intergenic 35.0%
CAATAAAAAGAGCGGACAAA+CGG + chr1_3:9036783-9036802 None:intergenic 35.0%
AACCAAATTATCTGCAACAG+CGG - chr1_3:9037128-9037147 Msa0102270:CDS 35.0%
GTTGCAGTTAGATTTCACTT+TGG - chr1_3:9037266-9037285 Msa0102270:CDS 35.0%
AAGAAAGAGGGGTAAAAATG+GGG - chr1_3:9037535-9037554 Msa0102270:intron 35.0%
ATTAGATTTCCTTCAAGTGG+CGG + chr1_3:9037592-9037611 None:intergenic 35.0%
! GTGGAAGCATAATTACTCAT+AGG - chr1_3:9037756-9037775 Msa0102270:intron 35.0%
AAGAACTTTGTGTGAGATCT+GGG + chr1_3:9037958-9037977 None:intergenic 35.0%
TAAGAACTTTGTGTGAGATC+TGG + chr1_3:9037959-9037978 None:intergenic 35.0%
TTAAGACCCCCAACTTTAAA+CGG + chr1_3:9038059-9038078 None:intergenic 35.0%
CCCAAAAAAAAATTCCCCAA+AGG - chr1_3:9038104-9038123 Msa0102270:intron 35.0%
!!! CCCTTTGGGGAATTTTTTTT+TGG + chr1_3:9038108-9038127 None:intergenic 35.0%
ATTAAGACACCGTACCTAAT+AGG + chr1_3:9038134-9038153 None:intergenic 35.0%
ATTAGGTACGGTGTCTTAAT+TGG - chr1_3:9038134-9038153 Msa0102270:intron 35.0%
! GGTAACACAAAAGCTCTTTT+TGG - chr1_3:9038234-9038253 Msa0102270:intron 35.0%
ACGAGCTTATAGCTTATTTC+AGG - chr1_3:9038261-9038280 Msa0102270:intron 35.0%
! GATAAGCTAGTTGAAGTGTT+TGG + chr1_3:9038409-9038428 None:intergenic 35.0%
AATTTGTGAACACTGGACTT+AGG + chr1_3:9038537-9038556 None:intergenic 35.0%
GTCCAGTGTTCACAAATTAA+TGG - chr1_3:9038539-9038558 Msa0102270:intron 35.0%
!! ACCCATTAATTTGTGAACAC+TGG + chr1_3:9038544-9038563 None:intergenic 35.0%
AGTGAGATTCTTCGGTAAAT+AGG + chr1_3:9038749-9038768 None:intergenic 35.0%
ATAACGAGAGTGAGATTCTT+CGG + chr1_3:9038757-9038776 None:intergenic 35.0%
!!! TTTTGGGGTTCAAGACAACA+TGG + chr1_3:9032914-9032933 None:intergenic 40.0%
!!! GTTGTGATGTGTCACTTTTG+GGG + chr1_3:9032929-9032948 None:intergenic 40.0%
!!! GAGTTGTGATGTGTCACTTT+TGG + chr1_3:9032931-9032950 None:intergenic 40.0%
CGAGATTCTTGTTCTTGTTC+AGG + chr1_3:9032969-9032988 None:intergenic 40.0%
ATAGAGAGAGAGAATGAGGA+AGG + chr1_3:9033055-9033074 None:intergenic 40.0%
ATCGAACAGGTAAAACGCAA+AGG + chr1_3:9033269-9033288 None:intergenic 40.0%
!! AGTGAGGCATTTTATCGAAC+AGG + chr1_3:9033282-9033301 None:intergenic 40.0%
TGTTCGATAAAATGCCTCAC+TGG - chr1_3:9033281-9033300 Msa0102270:intron 40.0%
GTTCGATAAAATGCCTCACT+GGG - chr1_3:9033282-9033301 Msa0102270:intron 40.0%
AAGTACAGTTAAACCCAGTG+AGG + chr1_3:9033298-9033317 None:intergenic 40.0%
GCATATAACATCGTGTGTTG+CGG - chr1_3:9033426-9033445 Msa0102270:intron 40.0%
CATATAACATCGTGTGTTGC+GGG - chr1_3:9033427-9033446 Msa0102270:intron 40.0%
ATAGCCCTGTGTTGAATCAA+GGG - chr1_3:9033647-9033666 Msa0102270:intron 40.0%
AGATCAGGATGAAGATCGAA+AGG + chr1_3:9033707-9033726 None:intergenic 40.0%
TTCGATCTTCATCCTGATCT+TGG - chr1_3:9033707-9033726 Msa0102270:intron 40.0%
!!! TTCTAGTTTTAGTCTGCACG+AGG - chr1_3:9033780-9033799 Msa0102270:intron 40.0%
!!! TCTAGTTTTAGTCTGCACGA+GGG - chr1_3:9033781-9033800 Msa0102270:intron 40.0%
! TAGTGTGTTTGATAACCCTG+AGG - chr1_3:9033914-9033933 Msa0102270:intron 40.0%
ATAACCCTGAGGTGAATCAA+GGG - chr1_3:9033925-9033944 Msa0102270:intron 40.0%
ATTCTTCATTCCCCACTTAG+TGG - chr1_3:9034098-9034117 Msa0102270:intron 40.0%
TTCTTCATTCCCCACTTAGT+GGG - chr1_3:9034099-9034118 Msa0102270:intron 40.0%
!! GCTTGGTTCTTGTTGTTGTT+TGG - chr1_3:9034127-9034146 Msa0102270:intron 40.0%
ATTATGAGGGAAGGAAAGTG+AGG - chr1_3:9034158-9034177 Msa0102270:intron 40.0%
AATCTACCTGCTTTGATTGC+AGG - chr1_3:9034271-9034290 Msa0102270:intron 40.0%
ACTATTGGAAACGGTAAAGC+AGG - chr1_3:9034351-9034370 Msa0102270:intron 40.0%
! GGAAGAGTGTATTCATTGAC+AGG - chr1_3:9034421-9034440 Msa0102270:intron 40.0%
AAATACACAGCTTAGCAGGA+AGG + chr1_3:9034530-9034549 None:intergenic 40.0%
TCTCGATCTGTTAAACGATC+TGG - chr1_3:9034549-9034568 Msa0102270:intron 40.0%
CTCGATCTGTTAAACGATCT+GGG - chr1_3:9034550-9034569 Msa0102270:intron 40.0%
CATGAAGGAAATTTGCAAGG+TGG - chr1_3:9034573-9034592 Msa0102270:intron 40.0%
GAGTTGCCCAAATTAAGTGA+AGG - chr1_3:9034636-9034655 Msa0102270:intron 40.0%
ATATCAAAAACTTGGGCCAC+TGG - chr1_3:9034716-9034735 Msa0102270:intron 40.0%
TGATTCCCTCTGCAAAGATA+TGG - chr1_3:9034893-9034912 Msa0102270:intron 40.0%
CGCATGCTAATTCCAAGTTA+GGG - chr1_3:9034931-9034950 Msa0102270:intron 40.0%
! TCTTGATGATATTCCGACTC+TGG - chr1_3:9035013-9035032 Msa0102270:intron 40.0%
ATAGATGGAAATGCCAGAGT+CGG + chr1_3:9035029-9035048 None:intergenic 40.0%
TAATATCTGCTGCCTTGTCA+TGG + chr1_3:9035076-9035095 None:intergenic 40.0%
CAAGTCAACTAGAACAAGTC+TGG + chr1_3:9035141-9035160 None:intergenic 40.0%
!! TGCCGCTTTGGATTTAACTA+AGG + chr1_3:9035186-9035205 None:intergenic 40.0%
CAACATGGGTAAAGAACTTC+TGG + chr1_3:9035226-9035245 None:intergenic 40.0%
CAGAAGTTCTTTACCCATGT+TGG - chr1_3:9035224-9035243 Msa0102270:intron 40.0%
ATCACTCGCCTTTATTCAAC+TGG - chr1_3:9035251-9035270 Msa0102270:CDS 40.0%
GCAAACCTCCAGTTGAATAA+AGG + chr1_3:9035262-9035281 None:intergenic 40.0%
TTCACACATGCAGTTCTTTG+AGG + chr1_3:9035405-9035424 None:intergenic 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG - chr1_3:9035457-9035476 Msa0102270:CDS 40.0%
CTTTGGGTGGTAGGAAATAT+AGG - chr1_3:9035494-9035513 Msa0102270:CDS 40.0%
! ATTGTATTGGAGGAGGGTTT+TGG + chr1_3:9035672-9035691 None:intergenic 40.0%
TGAAAAAAGGAAGGAGCAAG+TGG + chr1_3:9035778-9035797 None:intergenic 40.0%
!! AGGGGAGGGTTTTTGAAAAA+AGG + chr1_3:9035791-9035810 None:intergenic 40.0%
!! TAAGGCTTTGTTTGCGAGTT+TGG + chr1_3:9035814-9035833 None:intergenic 40.0%
AAACTCGCAAACAAAGCCTT+AGG - chr1_3:9035813-9035832 Msa0102270:intron 40.0%
TAGCTGTCTGATACCACAAT+AGG - chr1_3:9035850-9035869 Msa0102270:intron 40.0%
GAGACCATGTGAAAAATGAC+AGG + chr1_3:9036073-9036092 None:intergenic 40.0%
AAAGCAAAGACTCTTTCACC+TGG - chr1_3:9036202-9036221 Msa0102270:intron 40.0%
AAGCAAAGACTCTTTCACCT+GGG - chr1_3:9036203-9036222 Msa0102270:intron 40.0%
AAGGAGAAGATGAAGGTAGA+GGG + chr1_3:9036243-9036262 None:intergenic 40.0%
AAAGGAGAAGATGAAGGTAG+AGG + chr1_3:9036244-9036263 None:intergenic 40.0%
GTGAACAAAGGAGAAGATGA+AGG + chr1_3:9036250-9036269 None:intergenic 40.0%
TCCAAGGACATGTATGACAT+GGG + chr1_3:9036287-9036306 None:intergenic 40.0%
GTGGATTCATATTAGGTCCA+AGG + chr1_3:9036303-9036322 None:intergenic 40.0%
TGATTATGAAAGAGGCTGCA+AGG - chr1_3:9036345-9036364 Msa0102270:intron 40.0%
ATAGTGATGCATAAGCATCC+TGG + chr1_3:9036375-9036394 None:intergenic 40.0%
!! GCTCGGATAGATTTTTCGAA+TGG + chr1_3:9036635-9036654 None:intergenic 40.0%
AAAAATGGGTGTCTCCATTG+TGG + chr1_3:9037850-9037869 None:intergenic 40.0%
! ACAATGGAGACACCCATTTT+TGG - chr1_3:9037849-9037868 Msa0102270:intron 40.0%
AAAGAGTGATGTGTACGTGT+GGG + chr1_3:9037889-9037908 None:intergenic 40.0%
AAAAGAGTGATGTGTACGTG+TGG + chr1_3:9037890-9037909 None:intergenic 40.0%
TAAGACCCCCAACTTTAAAC+GGG + chr1_3:9038058-9038077 None:intergenic 40.0%
TACCTAATAGGTACCCCTTT+GGG + chr1_3:9038122-9038141 None:intergenic 40.0%
!! AAAGGGGTACCTATTAGGTA+CGG - chr1_3:9038122-9038141 Msa0102270:intron 40.0%
ATTGGTAAAGACACCACCAT+TGG - chr1_3:9038152-9038171 Msa0102270:intron 40.0%
TTGGTAAAGACACCACCATT+GGG - chr1_3:9038153-9038172 Msa0102270:intron 40.0%
TTTCATAAGACCATCCCCAA+TGG + chr1_3:9038171-9038190 None:intergenic 40.0%
!! GGGATGGTCTTATGAAAACA+TGG - chr1_3:9038174-9038193 Msa0102270:intron 40.0%
ACAACTACTTAGGCTCTGTT+TGG + chr1_3:9038476-9038495 None:intergenic 40.0%
ACACTGGACTTAGGATGTTT+AGG + chr1_3:9038528-9038547 None:intergenic 40.0%
GTTCAGGATTCTATGATCGG+AGG + chr1_3:9032953-9032972 None:intergenic 45.0%
CTCGTATTCGAACATGGACA+TGG - chr1_3:9032985-9033004 Msa0102270:intron 45.0%
TTCGAACATGGACATGGACA+TGG - chr1_3:9032991-9033010 Msa0102270:intron 45.0%
ATGGACCTCGACAACAACAA+AGG - chr1_3:9033016-9033035 Msa0102270:intron 45.0%
!! GGAAACCTTTGTTGTTGTCG+AGG + chr1_3:9033024-9033043 None:intergenic 45.0%
! CGCAGATGCAAAACCCATTT+TGG - chr1_3:9033143-9033162 Msa0102270:intron 45.0%
! GTAATCTTAGTTGGTGCACC+TGG - chr1_3:9033165-9033184 Msa0102270:intron 45.0%
GAAATCCACCTTCTGTGAAG+AGG - chr1_3:9033194-9033213 Msa0102270:intron 45.0%
CATAACCTCTTCACAGAAGG+TGG + chr1_3:9033202-9033221 None:intergenic 45.0%
ACGCATAACCTCTTCACAGA+AGG + chr1_3:9033205-9033224 None:intergenic 45.0%
GATAGCCCTGTGTTGAATCA+AGG - chr1_3:9033646-9033665 Msa0102270:intron 45.0%
GATAACCCTGAGGTGAATCA+AGG - chr1_3:9033924-9033943 Msa0102270:intron 45.0%
TAACCCTGAGGTGAATCAAG+GGG - chr1_3:9033926-9033945 Msa0102270:intron 45.0%
! TGAGGGCTTCTAGGTGTTTT+TGG - chr1_3:9034060-9034079 Msa0102270:intron 45.0%
ATTCCCCACTTAGTGGGAAA+AGG - chr1_3:9034105-9034124 Msa0102270:intron 45.0%
! AAGCCTTTTCCCACTAAGTG+GGG + chr1_3:9034111-9034130 None:intergenic 45.0%
! CAAGCCTTTTCCCACTAAGT+GGG + chr1_3:9034112-9034131 None:intergenic 45.0%
ATGCTCTAGCTGCACTACTT+AGG + chr1_3:9034392-9034411 None:intergenic 45.0%
!! TAGTGCAGCTAGAGCATTGA+AGG - chr1_3:9034395-9034414 Msa0102270:intron 45.0%
!! CAGCTAGAGCATTGAAGGAT+GGG - chr1_3:9034400-9034419 Msa0102270:intron 45.0%
GAAGGTCAAGTACAACTGCA+TGG + chr1_3:9034512-9034531 None:intergenic 45.0%
CGAGAAATACACAGCTTAGC+AGG + chr1_3:9034534-9034553 None:intergenic 45.0%
GTTAAACGATCTGGGCATGA+AGG - chr1_3:9034558-9034577 Msa0102270:intron 45.0%
GGGCATGAAGGAAATTTGCA+AGG - chr1_3:9034570-9034589 Msa0102270:intron 45.0%
AACCTTTCACATGGCTGCTT+CGG - chr1_3:9034741-9034760 Msa0102270:intron 45.0%
! CTGGTACCTCTACCTTTTTC+AGG + chr1_3:9034812-9034831 None:intergenic 45.0%
TGGAATTAGCATGCGCTGTT+GGG + chr1_3:9034926-9034945 None:intergenic 45.0%
TTGGAATTAGCATGCGCTGT+TGG + chr1_3:9034927-9034946 None:intergenic 45.0%
GCGCATGCTAATTCCAAGTT+AGG - chr1_3:9034930-9034949 Msa0102270:intron 45.0%
GGTCAGACTGATAAATCTGC+TGG - chr1_3:9034969-9034988 Msa0102270:intron 45.0%
CTGCCTTGTCATGGTTGAAT+TGG + chr1_3:9035067-9035086 None:intergenic 45.0%
ACTCGCCTTTATTCAACTGG+AGG - chr1_3:9035254-9035273 Msa0102270:CDS 45.0%
TCATTGCAAATGCTGCGAAC+TGG - chr1_3:9035291-9035310 Msa0102270:CDS 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - chr1_3:9035461-9035480 Msa0102270:CDS 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - chr1_3:9035462-9035481 Msa0102270:CDS 45.0%
!!! GGGTTTTGGAAGGTTTTGGA+GGG + chr1_3:9035658-9035677 None:intergenic 45.0%
!!! AGGGTTTTGGAAGGTTTTGG+AGG + chr1_3:9035659-9035678 None:intergenic 45.0%
!!! AGGAGGGTTTTGGAAGGTTT+TGG + chr1_3:9035662-9035681 None:intergenic 45.0%
!!! TATTGGAGGAGGGTTTTGGA+AGG + chr1_3:9035668-9035687 None:intergenic 45.0%
! TAGAGAACTTTGGGAGAGGA+GGG + chr1_3:9035749-9035768 None:intergenic 45.0%
! ATAGAGAACTTTGGGAGAGG+AGG + chr1_3:9035750-9035769 None:intergenic 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG + chr1_3:9035809-9035828 None:intergenic 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG + chr1_3:9035810-9035829 None:intergenic 45.0%
TAGCGATCGAGGAAATCCTA+AGG + chr1_3:9035832-9035851 None:intergenic 45.0%
CTGTCTGATACCACAATAGG+AGG - chr1_3:9035853-9035872 Msa0102270:intron 45.0%
! GCATCAATTTTTGATGCCGC+AGG - chr1_3:9036151-9036170 Msa0102270:intron 45.0%
TCTCCTTTGTTCACCAGAGA+AGG - chr1_3:9036256-9036275 Msa0102270:intron 45.0%
ACACCTTCTCTGGTGAACAA+AGG + chr1_3:9036262-9036281 None:intergenic 45.0%
ACCCATGTCATACATGTCCT+TGG - chr1_3:9036283-9036302 Msa0102270:intron 45.0%
GTCCAAGGACATGTATGACA+TGG + chr1_3:9036288-9036307 None:intergenic 45.0%
CTCCGCTGTTGCAGATAATT+TGG + chr1_3:9037133-9037152 None:intergenic 45.0%
AAAGAGGGGTAAAAATGGGG+TGG - chr1_3:9037538-9037557 Msa0102270:intron 45.0%
GAGCATCCACAAATCCACAA+TGG - chr1_3:9037833-9037852 Msa0102270:intron 45.0%
GTGTCTCCATTGTGGATTTG+TGG + chr1_3:9037842-9037861 None:intergenic 45.0%
GGAGGGATTGAGTGCTTATT+AGG + chr1_3:9037933-9037952 None:intergenic 45.0%
ACTTTGTGTGAGATCTGGGT+TGG + chr1_3:9037954-9037973 None:intergenic 45.0%
ACCTAATAGGTACCCCTTTG+GGG + chr1_3:9038121-9038140 None:intergenic 45.0%
GTACCTAATAGGTACCCCTT+TGG + chr1_3:9038123-9038142 None:intergenic 45.0%
TGGTAAAGACACCACCATTG+GGG - chr1_3:9038154-9038173 Msa0102270:intron 45.0%
!!! TTTTTTTTTAATAATGTTTT+CGG - chr1_3:9036039-9036058 Msa0102270:intron 5.0%
!!! AGAATTTAAAATTTTATAAT+CGG + chr1_3:9036664-9036683 None:intergenic 5.0%
CATGGACATGGACATGGACA+TGG - chr1_3:9032997-9033016 Msa0102270:intron 50.0%
! TTAGTTGGTGCACCTGGAAG+CGG - chr1_3:9033171-9033190 Msa0102270:intron 50.0%
CACGCCCTTGATTCAACACA+GGG + chr1_3:9033654-9033673 None:intergenic 50.0%
ACACGCCCTTGATTCAACAC+AGG + chr1_3:9033655-9033674 None:intergenic 50.0%
TTAGTCTGCACGAGGGCTTT+AGG - chr1_3:9033788-9033807 Msa0102270:intron 50.0%
ACACCCCTTGATTCACCTCA+GGG + chr1_3:9033932-9033951 None:intergenic 50.0%
TAGTCTGCTTGAGGGCTTCT+AGG - chr1_3:9034051-9034070 Msa0102270:intron 50.0%
! CCAAGCCTTTTCCCACTAAG+TGG + chr1_3:9034113-9034132 None:intergenic 50.0%
CCACTTAGTGGGAAAAGGCT+TGG - chr1_3:9034110-9034129 Msa0102270:intron 50.0%
CTACCTGCTTTGATTGCAGG+AGG - chr1_3:9034274-9034293 Msa0102270:intron 50.0%
!! GCAGCTAGAGCATTGAAGGA+TGG - chr1_3:9034399-9034418 Msa0102270:intron 50.0%
CCATGTGAAAGGTTCTCCAG+TGG + chr1_3:9034735-9034754 None:intergenic 50.0%
CCACTGGAGAACCTTTCACA+TGG - chr1_3:9034732-9034751 Msa0102270:intron 50.0%
CTGGGAAGTAGAGTCTCCAA+TGG + chr1_3:9034859-9034878 None:intergenic 50.0%
GACTCTACTTCCCAGACTTC+TGG - chr1_3:9034864-9034883 Msa0102270:intron 50.0%
!! GACGTTCTTTTCTGCCGCTT+TGG + chr1_3:9035198-9035217 None:intergenic 50.0%
GCGAGTGATGTCTCCAACAT+GGG + chr1_3:9035240-9035259 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - chr1_3:9035460-9035479 Msa0102270:CDS 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG + chr1_3:9035811-9035830 None:intergenic 50.0%
TATCAGACAGCTAGCGATCG+AGG + chr1_3:9035843-9035862 None:intergenic 50.0%
ATTTGCAGGCGACTGAAACC+TGG - chr1_3:9036112-9036131 Msa0102270:intron 50.0%
TTGGTTGCAGACTCCAGTTC+AGG + chr1_3:9036178-9036197 None:intergenic 50.0%
! TGTGTGAGATCTGGGTTGGA+GGG + chr1_3:9037950-9037969 None:intergenic 50.0%
! TTGTGTGAGATCTGGGTTGG+AGG + chr1_3:9037951-9037970 None:intergenic 50.0%
! TGCGGGTCCCGTTTAAAGTT+GGG - chr1_3:9038048-9038067 Msa0102270:intron 50.0%
GGGGGTCTTAAATAAGACCC+CGG - chr1_3:9038068-9038087 Msa0102270:intron 50.0%
GGGGTCTTAAATAAGACCCC+GGG - chr1_3:9038069-9038088 Msa0102270:intron 50.0%
TTTGGGGGTCTCTTAAGACC+CGG + chr1_3:9038090-9038109 None:intergenic 50.0%
!! TCCCCAAAGGGGTACCTATT+AGG - chr1_3:9038117-9038136 Msa0102270:intron 50.0%
AAAGACACCACCATTGGGGA+TGG - chr1_3:9038158-9038177 Msa0102270:intron 50.0%
CATAAGACCATCCCCAATGG+TGG + chr1_3:9038168-9038187 None:intergenic 50.0%
! TAGTTGGTGCACCTGGAAGC+GGG - chr1_3:9033172-9033191 Msa0102270:intron 55.0%
! AAGGTGGATTTCCCGCTTCC+AGG + chr1_3:9033186-9033205 None:intergenic 55.0%
AACCTGACAAACGCGAACCC+AGG + chr1_3:9033241-9033260 None:intergenic 55.0%
CACACCCCTTGATTCACCTC+AGG + chr1_3:9033933-9033952 None:intergenic 55.0%
CCACCTCCTGCAATCAAAGC+AGG + chr1_3:9034280-9034299 None:intergenic 55.0%
CCTGCTTTGATTGCAGGAGG+TGG - chr1_3:9034277-9034296 Msa0102270:intron 55.0%
GACCGAAGCAGCCATGTGAA+AGG + chr1_3:9034746-9034765 None:intergenic 55.0%
GGCGAGTGATGTCTCCAACA+TGG + chr1_3:9035241-9035260 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG - chr1_3:9035465-9035484 Msa0102270:CDS 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG - chr1_3:9035466-9035485 Msa0102270:CDS 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG - chr1_3:9035467-9035486 Msa0102270:CDS 55.0%
TTTGGGAGAGGAGGGCTTTG+GGG + chr1_3:9035741-9035760 None:intergenic 55.0%
! CTTTGGGAGAGGAGGGCTTT+GGG + chr1_3:9035742-9035761 None:intergenic 55.0%
! ACTTTGGGAGAGGAGGGCTT+TGG + chr1_3:9035743-9035762 None:intergenic 55.0%
GTTTGCGAGTTTGGAGGGGA+GGG + chr1_3:9035805-9035824 None:intergenic 55.0%
TGTTTGCGAGTTTGGAGGGG+AGG + chr1_3:9035806-9035825 None:intergenic 55.0%
AGACTCCAGTTCAGGACCTG+CGG + chr1_3:9036170-9036189 None:intergenic 55.0%
GACATGGGTCACACCTTCTC+TGG + chr1_3:9036272-9036291 None:intergenic 55.0%
AAGAGGCTGCAAGGTTCTCC+AGG - chr1_3:9036354-9036373 Msa0102270:CDS 55.0%
GGGTAAAAATGGGGTGGCCA+TGG - chr1_3:9037544-9037563 Msa0102270:intron 55.0%
! TCCTTCAAGTGGCGGAACCA+GGG + chr1_3:9037584-9037603 None:intergenic 55.0%
! TTCCTTCAAGTGGCGGAACC+AGG + chr1_3:9037585-9037604 None:intergenic 55.0%
! GTGCGGGTCCCGTTTAAAGT+TGG - chr1_3:9038047-9038066 Msa0102270:intron 55.0%
! GCGGGTCCCGTTTAAAGTTG+GGG - chr1_3:9038049-9038068 Msa0102270:intron 55.0%
! CGGGTCCCGTTTAAAGTTGG+GGG - chr1_3:9038050-9038069 Msa0102270:intron 55.0%
TTGGGGGTCTCTTAAGACCC+GGG + chr1_3:9038089-9038108 None:intergenic 55.0%
TGCGTTCCTCTTCTCGCACC+TGG - chr1_3:9033220-9033239 Msa0102270:intron 60.0%
GCGTTCCTCTTCTCGCACCT+GGG - chr1_3:9033221-9033240 Msa0102270:intron 60.0%
CACCTGGGTTCGCGTTTGTC+AGG - chr1_3:9033236-9033255 Msa0102270:intron 60.0%
! TTGGGAGAGGAGGGCTTTGG+GGG + chr1_3:9035740-9035759 None:intergenic 60.0%
TGCAGGCGACTGAAACCTGG+CGG - chr1_3:9036115-9036134 Msa0102270:intron 60.0%
TGATGCCGCAGGTCCTGAAC+TGG - chr1_3:9036162-9036181 Msa0102270:intron 60.0%
GGGACGACAACAGCATTCCC+AGG + chr1_3:9036223-9036242 None:intergenic 60.0%
! CCTTCAAGTGGCGGAACCAG+GGG + chr1_3:9037583-9037602 None:intergenic 60.0%
TGGGGGTCTCTTAAGACCCG+GGG + chr1_3:9038088-9038107 None:intergenic 60.0%
GCGAACCCAGGTGCGAGAAG+AGG + chr1_3:9033229-9033248 None:intergenic 65.0%
GGAGTTTGGAGGGGAGGGGA+GGG - chr1_3:9035471-9035490 Msa0102270:CDS 65.0%
!! AGGGGAGGGCTTTGGGTGGT+AGG - chr1_3:9035485-9035504 Msa0102270:CDS 65.0%
!! TGGGAGAGGAGGGCTTTGGG+GGG + chr1_3:9035739-9035758 None:intergenic 65.0%
AGGCGACTGAAACCTGGCGG+TGG - chr1_3:9036118-9036137 Msa0102270:intron 65.0%
CGACTGAAACCTGGCGGTGG+AGG - chr1_3:9036121-9036140 Msa0102270:intron 65.0%
! GCATTGACACCTCCACCGCC+AGG + chr1_3:9036133-9036152 None:intergenic 65.0%
GAACCAGGGGTGGCATGGGA+AGG + chr1_3:9037570-9037589 None:intergenic 65.0%
! TCAAGTGGCGGAACCAGGGG+TGG + chr1_3:9037580-9037599 None:intergenic 65.0%
CCCCTGGTTCCGCCACTTGA+AGG - chr1_3:9037580-9037599 Msa0102270:intron 65.0%
GGGAGTTTGGAGGGGAGGGG+AGG - chr1_3:9035470-9035489 Msa0102270:CDS 70.0%
TGGAGGGGAGGGGAGGGCTT+TGG - chr1_3:9035477-9035496 Msa0102270:CDS 70.0%
GGAGGGGAGGGGAGGGCTTT+GGG - chr1_3:9035478-9035497 Msa0102270:CDS 70.0%
GGGGTGGCATGGGAAGGCCA+TGG + chr1_3:9037564-9037583 None:intergenic 70.0%
TGGCCTTCCCATGCCACCCC+TGG - chr1_3:9037564-9037583 Msa0102270:intron 70.0%
GGCGGAACCAGGGGTGGCAT+GGG + chr1_3:9037574-9037593 None:intergenic 70.0%
TGGCGGAACCAGGGGTGGCA+TGG + chr1_3:9037575-9037594 None:intergenic 70.0%
!! GGGGAGGGGAGGGCTTTGGG+TGG - chr1_3:9035481-9035500 Msa0102270:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 9032879 9038780 9032879 ID=Msa0102270;Name=Msa0102270
chr1_3 mRNA 9032879 9038780 9032879 ID=Msa0102270-mRNA-1;Parent=Msa0102270;Name=Msa0102270-mRNA-1;_AED=0.04;_eAED=0.04;_QI=119|0.75|0.6|0.8|1|1|5|0|486
chr1_3 exon 9032879 9032917 9032879 ID=Msa0102270-mRNA-1:exon:3603;Parent=Msa0102270-mRNA-1
chr1_3 exon 9035233 9035539 9035233 ID=Msa0102270-mRNA-1:exon:3602;Parent=Msa0102270-mRNA-1
chr1_3 exon 9036347 9037311 9036347 ID=Msa0102270-mRNA-1:exon:3601;Parent=Msa0102270-mRNA-1
chr1_3 exon 9038402 9038511 9038402 ID=Msa0102270-mRNA-1:exon:3600;Parent=Msa0102270-mRNA-1
chr1_3 exon 9038622 9038780 9038622 ID=Msa0102270-mRNA-1:exon:3599;Parent=Msa0102270-mRNA-1
chr1_3 five_prime_UTR 9038662 9038780 9038662 ID=Msa0102270-mRNA-1:five_prime_utr;Parent=Msa0102270-mRNA-1
chr1_3 CDS 9038622 9038661 9038622 ID=Msa0102270-mRNA-1:cds;Parent=Msa0102270-mRNA-1
chr1_3 CDS 9038402 9038511 9038402 ID=Msa0102270-mRNA-1:cds;Parent=Msa0102270-mRNA-1
chr1_3 CDS 9036347 9037311 9036347 ID=Msa0102270-mRNA-1:cds;Parent=Msa0102270-mRNA-1
chr1_3 CDS 9035233 9035539 9035233 ID=Msa0102270-mRNA-1:cds;Parent=Msa0102270-mRNA-1
chr1_3 CDS 9032879 9032917 9032879 ID=Msa0102270-mRNA-1:cds;Parent=Msa0102270-mRNA-1
Gene Sequence

>Msa0102270

ATGGACATGGACATGGACATGGACCTCGACAACAACAAAGATGCAAAACCCATTTTGGTAATCTTAGTTGGTGCACCTGGAAGCGGGAAATCCACCTTCTGTGAAGAGGTTATGCGTTCCTCTTCTCGCACCTGGGTTCGCGTTTGTCAGGACACTATTGGAAACGGTAAAGCAGGAAGTAAAGCTCAATGCCTAAGTAGTGCAGCTAGAGCATTGAAGGATGGGAAGAGTGTATTCATTGACAGGTGCAATCTTAATAGAGAACAGCGGTCAGATTTTTTAAAGCTTCGGGGTGAATCCCAAATAGATATCCATGCAGTTGTACTTGACCTTCCTGCTAAGCTGTGTATTTCTCGATCTGTTAAACGATCTGGGCATGAAGGAAATTTGCAAGGTGGAAAAGCTGCTGCAGTTGTGAATAGAATGCTTCAAAGTAAAGAGTTGCCCAAATTAAGTGAAGGCTTTAACCGAATAACATTTTGTCAGGGTGAGAGTAATGTCAAAGATGCTATTGATACATATCAAAAACTTGGGCCACTGGAGAACCTTTCACATGGCTGCTTCGGTCAGAAAAATCCAGATTCCAAAATCCAATCTAGTATAATGAAATTCCTGAAAAAGGTAGAGGTACCAGTTGATACTGCATCTAAAGAAAATACCATTGGAGACTCTACTTCCCAGACTTCTGGAAAAAATGATTCCCTCTGCAAAGATATGGACAAAATCCCAACAGCGCATGCTAATTCCAAGTTAGGGTCAAAAGATATAGAAGGTCAGACTGATAAATCTGCTGGTTCCTGTCACAATCAAGTTTCTCTTGATGATATTCCGACTCTGGCATTTCCATCTATTTCAACAGCAGATTTCCAATTCAACCATGACAAGGCAGCAGATATTATTGTTGAGAAGGTTGCAGAGTACTCAAATAAGATGGGGAATGCCAGACTTGTTCTAGTTGACTTGACACATAGATCAAAAATTTTGTCCTTAGTTAAATCCAAAGCGGCAGAAAAGAACGTCGACACCCAGAAGTTCTTTACCCATGTTGGAGACATCACTCGCCTTTATTCAACTGGAGGTTTGCGCTGTAATGTCATTGCAAATGCTGCGAACTGGCGACTGAAACCTGGCGGTGGAGGTGTCAATGCATCAATTTTTGATGCCGCAGGTCCTGAACTGGAGTCTGCAACCAAAGAAAAAGCAAAGACTCTTTCACCTGGGAATGCTGTTGTCGTCCCTCTACCTTCATCTTCTCCTTTGTTCACCAGAGAAGGTGTGACCCATGTCATACATGTCCTTGGACCTAATATGAATCCACAAAGACCAAATTGTCTGAACAATGATTATGAAAGAGGCTGCAAGGTTCTCCAGGATGCTTATGCATCACTATTTGAAGGTTTTGCATCAATTGTTAGGAACACGTTGTCCTATTTACCGAAGAATCTCACTCTCGTTATTTAG

Protein sequence

>Msa0102270

MDMDMDMDLDNNKDAKPILVILVGAPGSGKSTFCEEVMRSSSRTWVRVCQDTIGNGKAGSKAQCLSSAARALKDGKSVFIDRCNLNREQRSDFLKLRGESQIDIHAVVLDLPAKLCISRSVKRSGHEGNLQGGKAAAVVNRMLQSKELPKLSEGFNRITFCQGESNVKDAIDTYQKLGPLENLSHGCFGQKNPDSKIQSSIMKFLKKVEVPVDTASKENTIGDSTSQTSGKNDSLCKDMDKIPTAHANSKLGSKDIEGQTDKSAGSCHNQVSLDDIPTLAFPSISTADFQFNHDKAADIIVEKVAEYSNKMGNARLVLVDLTHRSKILSLVKSKAAEKNVDTQKFFTHVGDITRLYSTGGLRCNVIANAANWRLKPGGGGVNASIFDAAGPELESATKEKAKTLSPGNAVVVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNCLNNDYERGCKVLQDAYASLFEGFASIVRNTLSYLPKNLTLVI*