AlfalfaGEDB | Msa1429250

M. sativa cultivar zhongmu-4 / Msa1429250

KEGG: K04564
GO: GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748
PFAM: PF00081.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1429250	XP_013461079.1	72.653	245	29	3	2	208	15	259	9.84e-118	345

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1429250	sp\|Q9FMX0\|SODF3_ARATH	59.155	213	49	3	31	205	45	257	5.24e-86	258

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1429250	A0A072V160	72.653	245	29	3	2	208	15	259	4.70e-118	345

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001950	Msa1429250	0.814854	1.246364e-51	-8.615850e-47
Msa0014920	Msa1429250	0.804643	1.957914e-49	-8.615850e-47
Msa0016670	Msa1429250	0.810738	9.930184e-51	-8.615850e-47
Msa0017510	Msa1429250	0.820743	5.838029e-53	-8.615850e-47
Msa0022640	Msa1429250	0.807496	4.913943e-50	-8.615850e-47
Msa0027540	Msa1429250	0.819971	8.775781e-53	-8.615850e-47
Msa0030430	Msa1429250	0.817394	3.374447e-52	-8.615850e-47
Msa0030730	Msa1429250	0.828277	9.829063e-55	-8.615850e-47
Msa0032120	Msa1429250	0.841197	5.499375e-58	-8.615850e-47
Msa0032400	Msa1429250	0.822064	2.892257e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1429250	MtrunA17_Chr3g0118421	72.653	245	29	3	2	208	15	259	9.05e-122	345
Msa1429250	MtrunA17_Chr1g0170691	41.057	246	89	4	12	201	30	275	1.26e-48	161
Msa1429250	MtrunA17_Chr3g0128941	26.457	223	115	7	13	192	13	229	5.73e-19	82.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1429250	AT5G23310.1	59.155	213	49	3	31	205	45	257	5.33e-87	258
Msa1429250	AT5G51100.1	42.544	228	78	4	20	194	36	263	7.07e-57	182
Msa1429250	AT5G51100.5	43.379	219	80	5	20	194	36	254	2.70e-55	178
Msa1429250	AT4G25100.3	44.019	209	82	2	26	199	1	209	3.65e-51	165
Msa1429250	AT4G25100.5	44.019	209	82	2	26	199	1	209	3.65e-51	165
Msa1429250	AT4G25100.1	44.019	209	82	2	26	199	1	209	3.65e-51	165
Msa1429250	AT4G25100.2	44.019	209	82	2	26	199	1	209	3.65e-51	165
Msa1429250	AT5G51100.2	41.538	195	62	3	52	194	1	195	8.56e-47	154
Msa1429250	AT5G51100.6	41.538	195	62	3	52	194	1	195	8.56e-47	154
Msa1429250	AT5G51100.4	49.660	147	54	2	20	146	36	182	1.65e-44	148

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Find 83 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCTTAAGGAGAAGTTT+AGG	0.403849	tig0026478:-3023	None:intergenic
AAGGATTTATCAGTATGGAA+CGG	0.648053	tig0026478:+3038	Msa1429250:three_prime_UTR
AAGTTTAGGCAGCGGCAATG+TGG	0.636851	tig0026478:-3009	None:intergenic
AATCAATTTGGATTTGTGGG+AGG	0.621467	tig0026478:+2312	Msa1429250:CDS
AATGCAGCATGCATACTATC+TGG	0.401361	tig0026478:+2445	Msa1429250:intron
ACACTTACATGTTCGTAGGG+AGG	0.658707	tig0026478:-288	None:intergenic
ACTGAGGAAAATCTGCAAAA+TGG	0.375899	tig0026478:+2888	Msa1429250:three_prime_UTR
ACTTACATGTTCGTAGGGAG+GGG	0.579268	tig0026478:-286	None:intergenic
AGCAAATCAATTTGGATTTG+TGG	0.418009	tig0026478:+2308	Msa1429250:CDS
AGCAGACAATCGACATGCAC+TGG	0.468183	tig0026478:+729	Msa1429250:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTAAGCAGAAAAAGAGGTT+TGG	+	tig0026478:216-235	Msa1429250:CDS	30.0%
TCCAATCAAAAACATGGATT+CGG	-	tig0026478:327-346	None:intergenic	30.0%
AAAACATTAGTGATCGACAA+AGG	+	tig0026478:518-537	Msa1429250:intron	30.0%
AAACATTAGTGATCGACAAA+GGG	+	tig0026478:519-538	Msa1429250:intron	30.0%
TAAAGGTTGGACTTAATTGA+AGG	-	tig0026478:615-634	None:intergenic	30.0%
TGGAAGGATGATATACTTTA+TGG	+	tig0026478:796-815	Msa1429250:intron	30.0%
TATACTTTATGGTTACACCT+TGG	+	tig0026478:807-826	Msa1429250:intron	30.0%
TGCCAATATTATCAACACTT+GGG	-	tig0026478:1031-1050	None:intergenic	30.0%
ATGCCAATATTATCAACACT+TGG	-	tig0026478:1032-1051	None:intergenic	30.0%
GAAACTATATCAATGTAAGG+TGG	+	tig0026478:1156-1175	Msa1429250:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0026478	gene	168	3258	168	ID=Msa1429250;Name=Msa1429250
tig0026478	mRNA	168	3258	168	ID=Msa1429250-mRNA-1;Parent=Msa1429250;Name=Msa1429250-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.66\|0.42\|1\|0.83\|0.85\|7\|561\|216
tig0026478	exon	168	302	168	ID=Msa1429250-mRNA-1:exon:6437;Parent=Msa1429250-mRNA-1
tig0026478	exon	704	779	704	ID=Msa1429250-mRNA-1:exon:6438;Parent=Msa1429250-mRNA-1
tig0026478	exon	839	894	839	ID=Msa1429250-mRNA-1:exon:6439;Parent=Msa1429250-mRNA-1
tig0026478	exon	1547	1718	1547	ID=Msa1429250-mRNA-1:exon:6440;Parent=Msa1429250-mRNA-1
tig0026478	exon	2287	2333	2287	ID=Msa1429250-mRNA-1:exon:6441;Parent=Msa1429250-mRNA-1
tig0026478	exon	2452	2475	2452	ID=Msa1429250-mRNA-1:exon:6442;Parent=Msa1429250-mRNA-1
tig0026478	exon	2557	3258	2557	ID=Msa1429250-mRNA-1:exon:6443;Parent=Msa1429250-mRNA-1
tig0026478	CDS	168	302	168	ID=Msa1429250-mRNA-1:cds;Parent=Msa1429250-mRNA-1
tig0026478	CDS	704	779	704	ID=Msa1429250-mRNA-1:cds;Parent=Msa1429250-mRNA-1
tig0026478	CDS	839	894	839	ID=Msa1429250-mRNA-1:cds;Parent=Msa1429250-mRNA-1
tig0026478	CDS	1547	1718	1547	ID=Msa1429250-mRNA-1:cds;Parent=Msa1429250-mRNA-1
tig0026478	CDS	2287	2333	2287	ID=Msa1429250-mRNA-1:cds;Parent=Msa1429250-mRNA-1
tig0026478	CDS	2452	2475	2452	ID=Msa1429250-mRNA-1:cds;Parent=Msa1429250-mRNA-1
tig0026478	CDS	2557	2697	2557	ID=Msa1429250-mRNA-1:cds;Parent=Msa1429250-mRNA-1
tig0026478	three_prime_UTR	2698	3258	2698	ID=Msa1429250-mRNA-1:three_prime_utr;Parent=Msa1429250-mRNA-1

Gene Sequence

>Msa1429250

GCAATTTTTTTTTCTGATTTGTGGCTATCTGTTTCCTCCTCAATTGTATTTAAGCAGAAAAAGAGGTTTGGTGTCTTGCCCAGATCTTCAAAAGTTACAGCATTTTATGGTTTGAAGACCCCTCCCTACGAACATGATGCATTAGAGCCATATATGAGCAAGCAGACAATCGACATGCACTGGGGAGAGCATCATCGGAATTTTGTTGAAGTCAAAGTGACATACAACAATGGCAATCCCTCACCTGAGTTCAACAATGCAGCTGAGGTTTGGAATCATGACTTCTTCTGGGAATCCATGCAACCGGGAGGAGGTGATAGGCCCATTCTAGGTCTCCTTCAACAGATTGAAAAGGATTTTGGATCATTTACGAATTTCAAAGAAAAGTTTACAGAAGCTGCACTTACATTGTTTGGTTCTGGCTGGGTTTGGCTAGTTTCTGATAGTCTTTTCTCCGTGCAGCAAATCAATTTGGATTTGTGGGAGCATGCATACTATCTGGATTACAAGAATGACAGAGCAAAGTATGTGAATGTATTTCTGAACCACCTTGTGTCTTGGAATACTGCAACGGAACGCTTGACATGGGGAGAGGCTTTTGTGAACTTGGGAGACCTAAAATTCCTGTTGCATAAAATATTGAAATGCTGA

Protein sequence

>Msa1429250

AIFFSDLWLSVSSSIVFKQKKRFGVLPRSSKVTAFYGLKTPPYEHDALEPYMSKQTIDMHWGEHHRNFVEVKVTYNNGNPSPEFNNAAEVWNHDFFWESMQPGGGDRPILGLLQQIEKDFGSFTNFKEKFTEAALTLFGSGWVWLVSDSLFSVQQINLDLWEHAYYLDYKNDRAKYVNVFLNHLVSWNTATERLTWGEAFVNLGDLKFLLHKILKC*