AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1429250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429250 MtrunA17_Chr3g0118421 72.653 245 29 3 2 208 15 259 9.05e-122 345
Msa1429250 MtrunA17_Chr1g0170691 41.057 246 89 4 12 201 30 275 1.26e-48 161
Msa1429250 MtrunA17_Chr3g0128941 26.457 223 115 7 13 192 13 229 5.73e-19 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429250 AT5G23310.1 59.155 213 49 3 31 205 45 257 5.33e-87 258
Msa1429250 AT5G51100.1 42.544 228 78 4 20 194 36 263 7.07e-57 182
Msa1429250 AT5G51100.5 43.379 219 80 5 20 194 36 254 2.70e-55 178
Msa1429250 AT4G25100.3 44.019 209 82 2 26 199 1 209 3.65e-51 165
Msa1429250 AT4G25100.5 44.019 209 82 2 26 199 1 209 3.65e-51 165
Msa1429250 AT4G25100.1 44.019 209 82 2 26 199 1 209 3.65e-51 165
Msa1429250 AT4G25100.2 44.019 209 82 2 26 199 1 209 3.65e-51 165
Msa1429250 AT5G51100.2 41.538 195 62 3 52 194 1 195 8.56e-47 154
Msa1429250 AT5G51100.6 41.538 195 62 3 52 194 1 195 8.56e-47 154
Msa1429250 AT5G51100.4 49.660 147 54 2 20 146 36 182 1.65e-44 148
Msa1429250 AT5G51100.3 49.660 147 54 2 20 146 36 182 1.65e-44 148
Msa1429250 AT4G25100.4 42.077 183 71 2 52 199 1 183 1.79e-40 137
Msa1429250 AT3G10920.1 30.045 223 108 9 15 192 5 224 1.58e-22 91.7
Msa1429250 AT3G10920.2 29.596 223 108 10 15 192 5 223 3.35e-20 85.5
Msa1429250 AT3G56350.1 31.429 175 80 5 42 177 42 215 7.03e-20 85.1

Find 83 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATCCACTCCTTCCTTTC+TGG 0.052374 tig0026478:-2789 None:intergenic
CAACAGATTGAAAAGGATTT+TGG 0.090800 tig0026478:+1619 Msa1429250:CDS
GCGTCCCATGTGCTTCTTTC+TGG 0.097898 tig0026478:+2837 Msa1429250:three_prime_UTR
CTCCGTGCAGCAAATCAATT+TGG 0.210001 tig0026478:+2300 Msa1429250:CDS
TTTGGAATCATGACTTCTTC+TGG 0.232976 tig0026478:+1548 Msa1429250:CDS
TATGAACAAGGCATCTTAAA+TGG 0.246552 tig0026478:+2712 Msa1429250:three_prime_UTR
GGGATGTAGTGAACTTAGTA+TGG 0.265185 tig0026478:+2912 Msa1429250:three_prime_UTR
ATCATTGAGTTTCAAATAAT+AGG 0.287785 tig0026478:-3153 None:intergenic
GCACTTACATTGTTTGGTTC+TGG 0.289790 tig0026478:+1679 Msa1429250:CDS
GAAGCTGCACTTACATTGTT+TGG 0.294047 tig0026478:+1673 Msa1429250:CDS
TCAAAGGCTTCACATGTCAT+AGG 0.312294 tig0026478:+2749 Msa1429250:three_prime_UTR
TTACATTGTTTGGTTCTGGC+TGG 0.329309 tig0026478:+1683 Msa1429250:CDS
TCCTTAAGGATTTATCAGTA+TGG 0.332324 tig0026478:+3033 Msa1429250:three_prime_UTR
GGAGGTGATAGGCCCATTCT+AGG 0.369142 tig0026478:+1589 Msa1429250:CDS
ACTGAGGAAAATCTGCAAAA+TGG 0.375899 tig0026478:+2888 Msa1429250:three_prime_UTR
TGTTTGGTTCTGGCTGGGTT+TGG 0.376067 tig0026478:+1689 Msa1429250:CDS
TTGGAATCATGACTTCTTCT+GGG 0.399356 tig0026478:+1549 Msa1429250:CDS
AATGCAGCATGCATACTATC+TGG 0.401361 tig0026478:+2445 Msa1429250:intron
AAATCCTTAAGGAGAAGTTT+AGG 0.403849 tig0026478:-3023 None:intergenic
ATTGTCTGCTTGCTCATATA+TGG 0.406654 tig0026478:-716 None:intergenic
TTCTGAACCACCTTGTGTCT+TGG 0.411846 tig0026478:+2585 Msa1429250:CDS
GCAAATCAATTTGGATTTGT+GGG 0.413151 tig0026478:+2309 Msa1429250:CDS
TCCACTCCTTCCTTTCTGGC+TGG 0.414148 tig0026478:-2785 None:intergenic
CTTCTGGGAATCCATGCAAC+CGG 0.415502 tig0026478:+1564 Msa1429250:CDS
AGCAAATCAATTTGGATTTG+TGG 0.418009 tig0026478:+2308 Msa1429250:CDS
TACATTGTTTGGTTCTGGCT+GGG 0.439690 tig0026478:+1684 Msa1429250:CDS
CAAGGCATCTTAAATGGAGT+TGG 0.440705 tig0026478:+2718 Msa1429250:three_prime_UTR
GCTGCCTAAACTTCTCCTTA+AGG 0.445159 tig0026478:+3019 Msa1429250:three_prime_UTR
GGAGTTGGTTTGAAATTCAA+AGG 0.467292 tig0026478:+2733 Msa1429250:three_prime_UTR
AGCAGACAATCGACATGCAC+TGG 0.468183 tig0026478:+729 Msa1429250:CDS
TCCATACTGATAAATCCTTA+AGG 0.475628 tig0026478:-3034 None:intergenic
ATCACCTCCTCCCGGTTGCA+TGG 0.477767 tig0026478:-1575 None:intergenic
GCACATCTACGTGGCAATCC+AGG 0.491071 tig0026478:-3099 None:intergenic
CTGTTGAAGGAGACCTAGAA+TGG 0.492826 tig0026478:-1602 None:intergenic
TGCAACCGGGAGGAGGTGAT+AGG 0.497633 tig0026478:+1578 Msa1429250:CDS
TTTCTGCTTAAATACAATTG+AGG 0.500446 tig0026478:-205 None:intergenic
TCTCCTTCAACAGATTGAAA+AGG 0.504146 tig0026478:+1612 Msa1429250:CDS
CAAAGGCTTCACATGTCATA+GGG 0.515600 tig0026478:+2750 Msa1429250:three_prime_UTR
CACTTACATGTTCGTAGGGA+GGG 0.519044 tig0026478:-287 None:intergenic
CTGCAACGGAACGCTTGACA+TGG 0.522432 tig0026478:+2612 Msa1429250:CDS
TGCACTGGGGAGAGCATCAT+CGG 0.535998 tig0026478:+744 Msa1429250:CDS
CTGCTTAAATACAATTGAGG+AGG 0.544378 tig0026478:-202 None:intergenic
TGGTACACTTACATGTTCGT+AGG 0.546092 tig0026478:-292 None:intergenic
ATCCAAATTGATTTGCTGCA+CGG 0.555435 tig0026478:-2302 None:intergenic
TTCTGGGAATCCATGCAACC+GGG 0.558653 tig0026478:+1565 Msa1429250:CDS
GAATCCATGCAACCGGGAGG+AGG 0.560022 tig0026478:+1571 Msa1429250:CDS
GGCTTCACATGTCATAGGGT+TGG 0.560208 tig0026478:+2754 Msa1429250:three_prime_UTR
GCAGACAATCGACATGCACT+GGG 0.561935 tig0026478:+730 Msa1429250:CDS
GGATGTAGTGAACTTAGTAT+GGG 0.562995 tig0026478:+2913 Msa1429250:three_prime_UTR
GCCAGCCAGAAAGGAAGGAG+TGG 0.563875 tig0026478:+2784 Msa1429250:three_prime_UTR
GGTCGTACAGCCAGCCAGAA+AGG 0.565896 tig0026478:+2775 Msa1429250:three_prime_UTR
TGCATACTATCTGGATTACA+AGG 0.567151 tig0026478:+2454 Msa1429250:CDS
GTACAGCCAGCCAGAAAGGA+AGG 0.569051 tig0026478:+2779 Msa1429250:three_prime_UTR
ACTTACATGTTCGTAGGGAG+GGG 0.579268 tig0026478:-286 None:intergenic
TGCAACGGAACGCTTGACAT+GGG 0.580555 tig0026478:+2613 Msa1429250:CDS
TGTTGAAGGAGACCTAGAAT+GGG 0.585469 tig0026478:-1601 None:intergenic
GGAACGCTTGACATGGGGAG+AGG 0.586433 tig0026478:+2619 Msa1429250:CDS
AGGAAAATCTGCAAAATGGA+GGG 0.588466 tig0026478:+2892 Msa1429250:three_prime_UTR
GGTACACTTACATGTTCGTA+GGG 0.593745 tig0026478:-291 None:intergenic
GAGGAAAATCTGCAAAATGG+AGG 0.597242 tig0026478:+2891 Msa1429250:three_prime_UTR
TTAAGGAGAAGTTTAGGCAG+CGG 0.597707 tig0026478:-3017 None:intergenic
GCATTGTTGAACTCAGGTGA+GGG 0.599120 tig0026478:-865 None:intergenic
TGCATTGTTGAACTCAGGTG+AGG 0.604713 tig0026478:-866 None:intergenic
TCAGCTGCATTGTTGAACTC+AGG 0.612280 tig0026478:-871 None:intergenic
TGAGTTCAACAATGCAGCTG+AGG 0.616915 tig0026478:+873 Msa1429250:CDS
ATGGGCCTATCACCTCCTCC+CGG 0.618331 tig0026478:-1583 None:intergenic
AATCAATTTGGATTTGTGGG+AGG 0.621467 tig0026478:+2312 Msa1429250:CDS
TGTGTCTTGGAATACTGCAA+CGG 0.632552 tig0026478:+2598 Msa1429250:CDS
AAGTTTAGGCAGCGGCAATG+TGG 0.636851 tig0026478:-3009 None:intergenic
TGAACTTAGTATGGGAGACA+AGG 0.637041 tig0026478:+2921 Msa1429250:three_prime_UTR
GATTACTATACTTATGAACA+AGG 0.639840 tig0026478:+2700 Msa1429250:three_prime_UTR
AAGGATTTATCAGTATGGAA+CGG 0.648053 tig0026478:+3038 Msa1429250:three_prime_UTR
CAGTATTCCAAGACACAAGG+TGG 0.655045 tig0026478:-2592 None:intergenic
ACACTTACATGTTCGTAGGG+AGG 0.658707 tig0026478:-288 None:intergenic
GATAACCAGAAAGAAGCACA+TGG 0.662417 tig0026478:-2842 None:intergenic
TTCATTGGAGCACATCTACG+TGG 0.664036 tig0026478:-3108 None:intergenic
GTCAAAGTGACATACAACAA+TGG 0.665004 tig0026478:+838 Msa1429250:intron
GCAACGGAACGCTTGACATG+GGG 0.668746 tig0026478:+2614 Msa1429250:CDS
TTGCAGTATTCCAAGACACA+AGG 0.680864 tig0026478:-2595 None:intergenic
TGGGAATCCATGCAACCGGG+AGG 0.708383 tig0026478:+1568 Msa1429250:CDS
GCTGTGTTAGTGTAGGACTG+AGG 0.717498 tig0026478:+2872 Msa1429250:three_prime_UTR
ATAACCAGAAAGAAGCACAT+GGG 0.744709 tig0026478:-2841 None:intergenic
CAGACAATCGACATGCACTG+GGG 0.790084 tig0026478:+731 Msa1429250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATATTACATAATAAAATT+AGG + tig0026478:996-1015 Msa1429250:intron 10.0%
!!! TTCAATAAATGATTTTTATT+TGG + tig0026478:1266-1285 Msa1429250:intron 10.0%
!! TCTGTATTAAAAAAAAAAAA+AGG - tig0026478:3234-3253 None:intergenic 10.0%
!! ATCATTTATTTGGTTAAAAT+CGG - tig0026478:475-494 None:intergenic 15.0%
!! TTCTTTCTTTATCATTTATT+TGG - tig0026478:485-504 None:intergenic 15.0%
!!! TATGACTAAATACATTTTTA+TGG - tig0026478:1109-1128 None:intergenic 15.0%
!!! TAATTTTTCATGAACTTTTT+TGG - tig0026478:3205-3224 None:intergenic 15.0%
!!! CAATTTTTTTTTCTGATTTG+TGG + tig0026478:169-188 Msa1429250:CDS 20.0%
!!! TACATTTTTGAGTTTGTTAA+AGG - tig0026478:632-651 None:intergenic 20.0%
!!! TGATCTTTTAAAGTTGATTA+TGG + tig0026478:924-943 Msa1429250:intron 20.0%
!!! TTTGAAACTATATCAATGTA+AGG + tig0026478:1153-1172 Msa1429250:intron 20.0%
!! TTATTAATGACACGTAAAAA+TGG - tig0026478:1228-1247 None:intergenic 20.0%
!! CAATAACAAAATTACAATTG+TGG + tig0026478:1450-1469 Msa1429250:intron 20.0%
!! GCATATTAAGAAGATAATAT+GGG - tig0026478:1792-1811 None:intergenic 20.0%
!! TTAATATGCCATAAAATCAT+TGG + tig0026478:1803-1822 Msa1429250:intron 20.0%
!! AATTCAGAAAAACAAAATCT+TGG - tig0026478:1884-1903 None:intergenic 20.0%
!!! ATTTACATATTTTATGCTTG+AGG + tig0026478:1935-1954 Msa1429250:intron 20.0%
!!! GACAGATTTTATATAATGAA+GGG - tig0026478:2245-2264 None:intergenic 20.0%
!!! ATTTCAATATTTTATGCAAC+AGG - tig0026478:2673-2692 None:intergenic 20.0%
!!! TTCATAACTTTTGTTTTCAT+TGG - tig0026478:3126-3145 None:intergenic 20.0%
!! ATCATTGAGTTTCAAATAAT+AGG - tig0026478:3156-3175 None:intergenic 20.0%
! TTTCTGCTTAAATACAATTG+AGG - tig0026478:208-227 None:intergenic 25.0%
! TTGTATTTAAGCAGAAAAAG+AGG + tig0026478:211-230 Msa1429250:CDS 25.0%
!! TCAAAAGTTACAGCATTTTA+TGG + tig0026478:255-274 Msa1429250:CDS 25.0%
! TATATCTCCAATCAAAAACA+TGG - tig0026478:333-352 None:intergenic 25.0%
!!! ACTGTTTTAACCTATATACT+TGG + tig0026478:352-371 Msa1429250:intron 25.0%
! TTCAACTAATCCAAGTATAT+AGG - tig0026478:365-384 None:intergenic 25.0%
! TAATTGAAGGATCAACAAAA+AGG - tig0026478:602-621 None:intergenic 25.0%
!!! TTTTTGAGTTTGTTAAAGGT+TGG - tig0026478:628-647 None:intergenic 25.0%
! AAGTTAGAATCATGATATGA+AGG - tig0026478:660-679 None:intergenic 25.0%
!! TTTGTTGCTTCAATATTCAT+AGG + tig0026478:682-701 Msa1429250:intron 25.0%
! ATGTCTTTAATTGTAGAATG+TGG + tig0026478:1129-1148 Msa1429250:intron 25.0%
! TGTCTTTAATTGTAGAATGT+GGG + tig0026478:1130-1149 Msa1429250:intron 25.0%
! ATAAATGAATACTCTTTCTG+TGG + tig0026478:1187-1206 Msa1429250:intron 25.0%
! GGCATATTAAGAAGATAATA+TGG - tig0026478:1793-1812 None:intergenic 25.0%
!!! AATTCTCATTTTTATCTCAC+TGG + tig0026478:1908-1927 Msa1429250:intron 25.0%
!!! ATTCTCATTTTTATCTCACT+GGG + tig0026478:1909-1928 Msa1429250:intron 25.0%
! AAACATTTGCAACAATCAAT+CGG - tig0026478:2122-2141 None:intergenic 25.0%
!! GGACAGATTTTATATAATGA+AGG - tig0026478:2246-2265 None:intergenic 25.0%
!! GTCCTATTTGAAATTTGAAA+TGG + tig0026478:2262-2281 Msa1429250:intron 25.0%
! CTCCATTTCAAATTTCAAAT+AGG - tig0026478:2267-2286 None:intergenic 25.0%
!! TTTTATGCAACAGGAATTTT+AGG - tig0026478:2664-2683 None:intergenic 25.0%
! GATTACTATACTTATGAACA+AGG + tig0026478:2700-2719 Msa1429250:three_prime_UTR 25.0%
! ACTCAATGATAAAAACTTGT+TGG + tig0026478:3166-3185 Msa1429250:three_prime_UTR 25.0%
TTTAAGCAGAAAAAGAGGTT+TGG + tig0026478:216-235 Msa1429250:CDS 30.0%
TCCAATCAAAAACATGGATT+CGG - tig0026478:327-346 None:intergenic 30.0%
AAAACATTAGTGATCGACAA+AGG + tig0026478:518-537 Msa1429250:intron 30.0%
AAACATTAGTGATCGACAAA+GGG + tig0026478:519-538 Msa1429250:intron 30.0%
TAAAGGTTGGACTTAATTGA+AGG - tig0026478:615-634 None:intergenic 30.0%
TGGAAGGATGATATACTTTA+TGG + tig0026478:796-815 Msa1429250:intron 30.0%
TATACTTTATGGTTACACCT+TGG + tig0026478:807-826 Msa1429250:intron 30.0%
! GCATTTTGAATAGGTTTATG+TGG - tig0026478:970-989 None:intergenic 30.0%
!! TACACTGAAGCATTTTGAAT+AGG - tig0026478:979-998 None:intergenic 30.0%
!! ATCCCAAGTGTTGATAATAT+TGG + tig0026478:1026-1045 Msa1429250:intron 30.0%
TGCCAATATTATCAACACTT+GGG - tig0026478:1031-1050 None:intergenic 30.0%
ATGCCAATATTATCAACACT+TGG - tig0026478:1032-1051 None:intergenic 30.0%
GAAACTATATCAATGTAAGG+TGG + tig0026478:1156-1175 Msa1429250:intron 30.0%
CCAAAAATATCTACATCACA+TGG - tig0026478:1405-1424 None:intergenic 30.0%
! CCATGTGATGTAGATATTTT+TGG + tig0026478:1402-1421 Msa1429250:intron 30.0%
CGGAAGAGGAAAAAATAATT+AGG - tig0026478:1523-1542 None:intergenic 30.0%
!!! TTATTTTTTCCTCTTCCGAA+AGG + tig0026478:1525-1544 Msa1429250:intron 30.0%
! AATCCTTTTCAATCTGTTGA+AGG - tig0026478:1618-1637 None:intergenic 30.0%
! CAACAGATTGAAAAGGATTT+TGG + tig0026478:1619-1638 Msa1429250:CDS 30.0%
! AGAGAAGTCCAATGATTTTA+TGG - tig0026478:1814-1833 None:intergenic 30.0%
!! GTGGTTTAGTTCTACAATAA+TGG + tig0026478:1982-2001 Msa1429250:intron 30.0%
ACCTTATTGTTTGATATTGC+CGG + tig0026478:2057-2076 Msa1429250:intron 30.0%
AGTAAAAAAAAAGGGCAACT+TGG - tig0026478:2095-2114 None:intergenic 30.0%
TGATTGTTGCAAATGTTTGT+TGG + tig0026478:2124-2143 Msa1429250:intron 30.0%
!! GGCATTTGAAGTTTTAACAA+TGG - tig0026478:2183-2202 None:intergenic 30.0%
AGCAAATCAATTTGGATTTG+TGG + tig0026478:2308-2327 Msa1429250:CDS 30.0%
GCAAATCAATTTGGATTTGT+GGG + tig0026478:2309-2328 Msa1429250:CDS 30.0%
ATAGCAACAACCTTTATGTT+AGG + tig0026478:2397-2416 Msa1429250:intron 30.0%
AAATAAGCGACGATATATGA+TGG - tig0026478:2487-2506 None:intergenic 30.0%
! TATGAACAAGGCATCTTAAA+TGG + tig0026478:2712-2731 Msa1429250:three_prime_UTR 30.0%
!! TATTTTTGCTGTGTTAGTGT+AGG + tig0026478:2865-2884 Msa1429250:three_prime_UTR 30.0%
AAATCCTTAAGGAGAAGTTT+AGG - tig0026478:3026-3045 None:intergenic 30.0%
TCCTTAAGGATTTATCAGTA+TGG + tig0026478:3033-3052 Msa1429250:three_prime_UTR 30.0%
TCCATACTGATAAATCCTTA+AGG - tig0026478:3037-3056 None:intergenic 30.0%
AAGGATTTATCAGTATGGAA+CGG + tig0026478:3038-3057 Msa1429250:three_prime_UTR 30.0%
GGAACGGTAAGTTAAAAATA+AGG + tig0026478:3054-3073 Msa1429250:three_prime_UTR 30.0%
! TTGCAATTTTGTATGAAACC+TGG + tig0026478:3081-3100 Msa1429250:three_prime_UTR 30.0%
!!! TTCATGAACTTTTTTGGACT+TGG - tig0026478:3199-3218 None:intergenic 30.0%
CTGCTTAAATACAATTGAGG+AGG - tig0026478:205-224 None:intergenic 35.0%
!! GCTGTAACTTTTGAAGATCT+GGG - tig0026478:249-268 None:intergenic 35.0%
!! TGCTGTAACTTTTGAAGATC+TGG - tig0026478:250-269 None:intergenic 35.0%
CCAATCAAAAACATGGATTC+GGG - tig0026478:326-345 None:intergenic 35.0%
AAATATGACGATGCAACGTA+TGG - tig0026478:422-441 None:intergenic 35.0%
ATGAACAGCAACAAAAGCAA+TGG - tig0026478:570-589 None:intergenic 35.0%
TTGAAGGATCAACAAAAAGG+AGG - tig0026478:599-618 None:intergenic 35.0%
ATTGTCTGCTTGCTCATATA+TGG - tig0026478:719-738 None:intergenic 35.0%
! CATCATCGGAATTTTGTTGA+AGG + tig0026478:758-777 Msa1429250:CDS 35.0%
GTCAAAGTGACATACAACAA+TGG + tig0026478:838-857 Msa1429250:intron 35.0%
ACAAGTTTCCGGTTATGAAT+GGG - tig0026478:1059-1078 None:intergenic 35.0%
! GTAAAAATGGAAAAGAGTGC+AGG - tig0026478:1215-1234 None:intergenic 35.0%
! TTACCTAGCTTGCATGAAAT+TGG + tig0026478:1300-1319 Msa1429250:intron 35.0%
TTTCCAATTTCATGCAAGCT+AGG - tig0026478:1306-1325 None:intergenic 35.0%
ATATCTACATCACATGGACT+GGG - tig0026478:1399-1418 None:intergenic 35.0%
AATATCTACATCACATGGAC+TGG - tig0026478:1400-1419 None:intergenic 35.0%
AGTCATGATTCCAAACCTTT+CGG - tig0026478:1543-1562 None:intergenic 35.0%
! TTTGGAATCATGACTTCTTC+TGG + tig0026478:1548-1567 Msa1429250:CDS 35.0%
TTGGAATCATGACTTCTTCT+GGG + tig0026478:1549-1568 Msa1429250:CDS 35.0%
TCTCCTTCAACAGATTGAAA+AGG + tig0026478:1612-1631 Msa1429250:CDS 35.0%
AAGGGGGAATCAATTAGAAA+AGG - tig0026478:1728-1747 None:intergenic 35.0%
! GTCACTTGTCTTTTGTCATT+TGG + tig0026478:1960-1979 Msa1429250:intron 35.0%
!! ACTTGTCTTTTGTCATTTGG+TGG + tig0026478:1963-1982 Msa1429250:intron 35.0%
! ATAGTTCTACACAACAGTCT+GGG - tig0026478:2012-2031 None:intergenic 35.0%
TCGGCAGCAGTAAAAAAAAA+GGG - tig0026478:2103-2122 None:intergenic 35.0%
ATCGGCAGCAGTAAAAAAAA+AGG - tig0026478:2104-2123 None:intergenic 35.0%
!! ATCCAAATTGATTTGCTGCA+CGG - tig0026478:2305-2324 None:intergenic 35.0%
AATCAATTTGGATTTGTGGG+AGG + tig0026478:2312-2331 Msa1429250:CDS 35.0%
!!! CTTGTGTTGTTTTGTGTTGT+AGG - tig0026478:2357-2376 None:intergenic 35.0%
TGCATACTATCTGGATTACA+AGG + tig0026478:2454-2473 Msa1429250:CDS 35.0%
!! GGAGTTGGTTTGAAATTCAA+AGG + tig0026478:2733-2752 Msa1429250:three_prime_UTR 35.0%
! ATAACCAGAAAGAAGCACAT+GGG - tig0026478:2844-2863 None:intergenic 35.0%
ACTGAGGAAAATCTGCAAAA+TGG + tig0026478:2888-2907 Msa1429250:three_prime_UTR 35.0%
AGGAAAATCTGCAAAATGGA+GGG + tig0026478:2892-2911 Msa1429250:three_prime_UTR 35.0%
GGATGTAGTGAACTTAGTAT+GGG + tig0026478:2913-2932 Msa1429250:three_prime_UTR 35.0%
GGTACACTTACATGTTCGTA+GGG - tig0026478:294-313 None:intergenic 40.0%
TGGTACACTTACATGTTCGT+AGG - tig0026478:295-314 None:intergenic 40.0%
CATGGATTCGGGTAACTATA+TGG - tig0026478:315-334 None:intergenic 40.0%
!! CCCGAATCCATGTTTTTGAT+TGG + tig0026478:323-342 Msa1429250:intron 40.0%
CAGCAACAAAAGCAATGGAA+AGG - tig0026478:565-584 None:intergenic 40.0%
! CACTTTGACTAGTTCATCCA+AGG - tig0026478:827-846 None:intergenic 40.0%
! AGTTGATTATGGCTCTGTAG+CGG + tig0026478:935-954 Msa1429250:intron 40.0%
CAAGTTTCCGGTTATGAATG+GGG - tig0026478:1058-1077 None:intergenic 40.0%
CACAAGTTTCCGGTTATGAA+TGG - tig0026478:1060-1079 None:intergenic 40.0%
TCAGAAGAGTTTCAGACTCT+CGG - tig0026478:1084-1103 None:intergenic 40.0%
! TTTTCCTCTTCCGAAAGGTT+TGG + tig0026478:1530-1549 Msa1429250:intron 40.0%
TGTTGAAGGAGACCTAGAAT+GGG - tig0026478:1604-1623 None:intergenic 40.0%
GAAGCTGCACTTACATTGTT+TGG + tig0026478:1673-1692 Msa1429250:CDS 40.0%
! GCACTTACATTGTTTGGTTC+TGG + tig0026478:1679-1698 Msa1429250:CDS 40.0%
!! TTACATTGTTTGGTTCTGGC+TGG + tig0026478:1683-1702 Msa1429250:CDS 40.0%
!! TACATTGTTTGGTTCTGGCT+GGG + tig0026478:1684-1703 Msa1429250:CDS 40.0%
CACATCACTTTAGCAAGACA+GGG - tig0026478:1753-1772 None:intergenic 40.0%
ACACATCACTTTAGCAAGAC+AGG - tig0026478:1754-1773 None:intergenic 40.0%
! CATAGTTCTACACAACAGTC+TGG - tig0026478:2013-2032 None:intergenic 40.0%
GCCGGCAATATCAAACAATA+AGG - tig0026478:2061-2080 None:intergenic 40.0%
CTATATCACCCCACACAATT+GGG - tig0026478:2211-2230 None:intergenic 40.0%
ACTATATCACCCCACACAAT+TGG - tig0026478:2212-2231 None:intergenic 40.0%
GTCAGTGATGCCTAACATAA+AGG - tig0026478:2410-2429 None:intergenic 40.0%
AGATAGTATGCATGCTGCAT+TGG - tig0026478:2446-2465 None:intergenic 40.0%
AATGCAGCATGCATACTATC+TGG + tig0026478:2445-2464 Msa1429250:intron 40.0%
! TTCTCACGTCGTGTAACTTT+TGG + tig0026478:2530-2549 Msa1429250:intron 40.0%
TTGCAGTATTCCAAGACACA+AGG - tig0026478:2598-2617 None:intergenic 40.0%
TGTGTCTTGGAATACTGCAA+CGG + tig0026478:2598-2617 Msa1429250:CDS 40.0%
! CAAGGCATCTTAAATGGAGT+TGG + tig0026478:2718-2737 Msa1429250:three_prime_UTR 40.0%
TCAAAGGCTTCACATGTCAT+AGG + tig0026478:2749-2768 Msa1429250:three_prime_UTR 40.0%
CAAAGGCTTCACATGTCATA+GGG + tig0026478:2750-2769 Msa1429250:three_prime_UTR 40.0%
! GATAACCAGAAAGAAGCACA+TGG - tig0026478:2845-2864 None:intergenic 40.0%
GAGGAAAATCTGCAAAATGG+AGG + tig0026478:2891-2910 Msa1429250:three_prime_UTR 40.0%
GGGATGTAGTGAACTTAGTA+TGG + tig0026478:2912-2931 Msa1429250:three_prime_UTR 40.0%
TGAACTTAGTATGGGAGACA+AGG + tig0026478:2921-2940 Msa1429250:three_prime_UTR 40.0%
TTAAGGAGAAGTTTAGGCAG+CGG - tig0026478:3020-3039 None:intergenic 40.0%
ACTTACATGTTCGTAGGGAG+GGG - tig0026478:289-308 None:intergenic 45.0%
CACTTACATGTTCGTAGGGA+GGG - tig0026478:290-309 None:intergenic 45.0%
ACACTTACATGTTCGTAGGG+AGG - tig0026478:291-310 None:intergenic 45.0%
GAAGGTTTGAACGAACAGCT+TGG + tig0026478:776-795 Msa1429250:intron 45.0%
GTTTGAACGAACAGCTTGGA+AGG + tig0026478:780-799 Msa1429250:intron 45.0%
GCATTGTTGAACTCAGGTGA+GGG - tig0026478:868-887 None:intergenic 45.0%
TGCATTGTTGAACTCAGGTG+AGG - tig0026478:869-888 None:intergenic 45.0%
TCAGCTGCATTGTTGAACTC+AGG - tig0026478:874-893 None:intergenic 45.0%
TGAGTTCAACAATGCAGCTG+AGG + tig0026478:873-892 Msa1429250:CDS 45.0%
GCATCTTCCCCATTCATAAC+CGG + tig0026478:1048-1067 Msa1429250:intron 45.0%
CAGAAGAGTTTCAGACTCTC+GGG - tig0026478:1083-1102 None:intergenic 45.0%
AATTGTCTGCCCAATCTGTG+TGG + tig0026478:1324-1343 Msa1429250:intron 45.0%
ATTGTCTGCCCAATCTGTGT+GGG + tig0026478:1325-1344 Msa1429250:intron 45.0%
! AGCCTTATCCCACACAGATT+GGG - tig0026478:1336-1355 None:intergenic 45.0%
! AAGCCTTATCCCACACAGAT+TGG - tig0026478:1337-1356 None:intergenic 45.0%
AATCTGTGTGGGATAAGGCT+TGG + tig0026478:1336-1355 Msa1429250:intron 45.0%
GATTCCAAACCTTTCGGAAG+AGG - tig0026478:1537-1556 None:intergenic 45.0%
CTGTTGAAGGAGACCTAGAA+TGG - tig0026478:1605-1624 None:intergenic 45.0%
TTTAGCAAGACAGGGAGAAG+GGG - tig0026478:1745-1764 None:intergenic 45.0%
CTTTAGCAAGACAGGGAGAA+GGG - tig0026478:1746-1765 None:intergenic 45.0%
ACTTTAGCAAGACAGGGAGA+AGG - tig0026478:1747-1766 None:intergenic 45.0%
!! AACTTGGTGCACTAAATCGC+CGG - tig0026478:2079-2098 None:intergenic 45.0%
! ATGCCATTTGCCCAATTGTG+TGG + tig0026478:2198-2217 Msa1429250:intron 45.0%
! TGCCATTTGCCCAATTGTGT+GGG + tig0026478:2199-2218 Msa1429250:intron 45.0%
CTCCGTGCAGCAAATCAATT+TGG + tig0026478:2300-2319 Msa1429250:CDS 45.0%
TTCTGAACCACCTTGTGTCT+TGG + tig0026478:2585-2604 Msa1429250:CDS 45.0%
CAGTATTCCAAGACACAAGG+TGG - tig0026478:2595-2614 None:intergenic 45.0%
! GGAGAGGCTTTTGTGAACTT+GGG + tig0026478:2635-2654 Msa1429250:CDS 45.0%
GCTGCCTAAACTTCTCCTTA+AGG + tig0026478:3019-3038 Msa1429250:three_prime_UTR 45.0%
TTCATTGGAGCACATCTACG+TGG - tig0026478:3111-3130 None:intergenic 45.0%
AGCAGACAATCGACATGCAC+TGG + tig0026478:729-748 Msa1429250:CDS 50.0%
GCAGACAATCGACATGCACT+GGG + tig0026478:730-749 Msa1429250:CDS 50.0%
CAGACAATCGACATGCACTG+GGG + tig0026478:731-750 Msa1429250:CDS 50.0%
TGCCCAATCTGTGTGGGATA+AGG + tig0026478:1331-1350 Msa1429250:intron 50.0%
! CTTCTGGGAATCCATGCAAC+CGG + tig0026478:1564-1583 Msa1429250:CDS 50.0%
! TTCTGGGAATCCATGCAACC+GGG + tig0026478:1565-1584 Msa1429250:CDS 50.0%
!! TGTTTGGTTCTGGCTGGGTT+TGG + tig0026478:1689-1708 Msa1429250:CDS 50.0%
TTAGCAAGACAGGGAGAAGG+GGG - tig0026478:1744-1763 None:intergenic 50.0%
GCCATTTGCCCAATTGTGTG+GGG + tig0026478:2200-2219 Msa1429250:intron 50.0%
ACCCCACACAATTGGGCAAA+TGG - tig0026478:2204-2223 None:intergenic 50.0%
TGCAACGGAACGCTTGACAT+GGG + tig0026478:2613-2632 Msa1429250:CDS 50.0%
! GGGAGAGGCTTTTGTGAACT+TGG + tig0026478:2634-2653 Msa1429250:CDS 50.0%
GGCTTCACATGTCATAGGGT+TGG + tig0026478:2754-2773 Msa1429250:three_prime_UTR 50.0%
CTGATCCACTCCTTCCTTTC+TGG - tig0026478:2792-2811 None:intergenic 50.0%
GCTGTGTTAGTGTAGGACTG+AGG + tig0026478:2872-2891 Msa1429250:three_prime_UTR 50.0%
AAGTTTAGGCAGCGGCAATG+TGG - tig0026478:3012-3031 None:intergenic 50.0%
!! TGCACTGGGGAGAGCATCAT+CGG + tig0026478:744-763 Msa1429250:CDS 55.0%
GACTCTCGGGCACAAGTTTC+CGG - tig0026478:1070-1089 None:intergenic 55.0%
GGAGGTGATAGGCCCATTCT+AGG + tig0026478:1589-1608 Msa1429250:CDS 55.0%
CTGCAACGGAACGCTTGACA+TGG + tig0026478:2612-2631 Msa1429250:CDS 55.0%
GCAACGGAACGCTTGACATG+GGG + tig0026478:2614-2633 Msa1429250:CDS 55.0%
GTACAGCCAGCCAGAAAGGA+AGG + tig0026478:2779-2798 Msa1429250:three_prime_UTR 55.0%
! TCCACTCCTTCCTTTCTGGC+TGG - tig0026478:2788-2807 None:intergenic 55.0%
GCGTCCCATGTGCTTCTTTC+TGG + tig0026478:2837-2856 Msa1429250:three_prime_UTR 55.0%
GCACATCTACGTGGCAATCC+AGG - tig0026478:3102-3121 None:intergenic 55.0%
TGGGAATCCATGCAACCGGG+AGG + tig0026478:1568-1587 Msa1429250:CDS 60.0%
GAATCCATGCAACCGGGAGG+AGG + tig0026478:1571-1590 Msa1429250:CDS 60.0%
ATCACCTCCTCCCGGTTGCA+TGG - tig0026478:1578-1597 None:intergenic 60.0%
TGCAACCGGGAGGAGGTGAT+AGG + tig0026478:1578-1597 Msa1429250:CDS 60.0%
ATGGGCCTATCACCTCCTCC+CGG - tig0026478:1586-1605 None:intergenic 60.0%
GGAACGCTTGACATGGGGAG+AGG + tig0026478:2619-2638 Msa1429250:CDS 60.0%
GGTCGTACAGCCAGCCAGAA+AGG + tig0026478:2775-2794 Msa1429250:three_prime_UTR 60.0%
GCCAGCCAGAAAGGAAGGAG+TGG + tig0026478:2784-2803 Msa1429250:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
tig0026478 gene 168 3258 168 ID=Msa1429250;Name=Msa1429250
tig0026478 mRNA 168 3258 168 ID=Msa1429250-mRNA-1;Parent=Msa1429250;Name=Msa1429250-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.66|0.42|1|0.83|0.85|7|561|216
tig0026478 exon 168 302 168 ID=Msa1429250-mRNA-1:exon:6437;Parent=Msa1429250-mRNA-1
tig0026478 exon 704 779 704 ID=Msa1429250-mRNA-1:exon:6438;Parent=Msa1429250-mRNA-1
tig0026478 exon 839 894 839 ID=Msa1429250-mRNA-1:exon:6439;Parent=Msa1429250-mRNA-1
tig0026478 exon 1547 1718 1547 ID=Msa1429250-mRNA-1:exon:6440;Parent=Msa1429250-mRNA-1
tig0026478 exon 2287 2333 2287 ID=Msa1429250-mRNA-1:exon:6441;Parent=Msa1429250-mRNA-1
tig0026478 exon 2452 2475 2452 ID=Msa1429250-mRNA-1:exon:6442;Parent=Msa1429250-mRNA-1
tig0026478 exon 2557 3258 2557 ID=Msa1429250-mRNA-1:exon:6443;Parent=Msa1429250-mRNA-1
tig0026478 CDS 168 302 168 ID=Msa1429250-mRNA-1:cds;Parent=Msa1429250-mRNA-1
tig0026478 CDS 704 779 704 ID=Msa1429250-mRNA-1:cds;Parent=Msa1429250-mRNA-1
tig0026478 CDS 839 894 839 ID=Msa1429250-mRNA-1:cds;Parent=Msa1429250-mRNA-1
tig0026478 CDS 1547 1718 1547 ID=Msa1429250-mRNA-1:cds;Parent=Msa1429250-mRNA-1
tig0026478 CDS 2287 2333 2287 ID=Msa1429250-mRNA-1:cds;Parent=Msa1429250-mRNA-1
tig0026478 CDS 2452 2475 2452 ID=Msa1429250-mRNA-1:cds;Parent=Msa1429250-mRNA-1
tig0026478 CDS 2557 2697 2557 ID=Msa1429250-mRNA-1:cds;Parent=Msa1429250-mRNA-1
tig0026478 three_prime_UTR 2698 3258 2698 ID=Msa1429250-mRNA-1:three_prime_utr;Parent=Msa1429250-mRNA-1
Gene Sequence

>Msa1429250

GCAATTTTTTTTTCTGATTTGTGGCTATCTGTTTCCTCCTCAATTGTATTTAAGCAGAAAAAGAGGTTTGGTGTCTTGCCCAGATCTTCAAAAGTTACAGCATTTTATGGTTTGAAGACCCCTCCCTACGAACATGATGCATTAGAGCCATATATGAGCAAGCAGACAATCGACATGCACTGGGGAGAGCATCATCGGAATTTTGTTGAAGTCAAAGTGACATACAACAATGGCAATCCCTCACCTGAGTTCAACAATGCAGCTGAGGTTTGGAATCATGACTTCTTCTGGGAATCCATGCAACCGGGAGGAGGTGATAGGCCCATTCTAGGTCTCCTTCAACAGATTGAAAAGGATTTTGGATCATTTACGAATTTCAAAGAAAAGTTTACAGAAGCTGCACTTACATTGTTTGGTTCTGGCTGGGTTTGGCTAGTTTCTGATAGTCTTTTCTCCGTGCAGCAAATCAATTTGGATTTGTGGGAGCATGCATACTATCTGGATTACAAGAATGACAGAGCAAAGTATGTGAATGTATTTCTGAACCACCTTGTGTCTTGGAATACTGCAACGGAACGCTTGACATGGGGAGAGGCTTTTGTGAACTTGGGAGACCTAAAATTCCTGTTGCATAAAATATTGAAATGCTGA

Protein sequence

>Msa1429250

AIFFSDLWLSVSSSIVFKQKKRFGVLPRSSKVTAFYGLKTPPYEHDALEPYMSKQTIDMHWGEHHRNFVEVKVTYNNGNPSPEFNNAAEVWNHDFFWESMQPGGGDRPILGLLQQIEKDFGSFTNFKEKFTEAALTLFGSGWVWLVSDSLFSVQQINLDLWEHAYYLDYKNDRAKYVNVFLNHLVSWNTATERLTWGEAFVNLGDLKFLLHKILKC*