Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025560 | XP_003623411.2 | 97.995 | 399 | 8 | 0 | 1 | 399 | 54 | 452 | 0.0 | 807 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025560 | sp|Q9SCU1|PATL6_ARATH | 75.989 | 379 | 89 | 1 | 5 | 383 | 28 | 404 | 0.0 | 607 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025560 | G7KU47 | 97.995 | 399 | 8 | 0 | 1 | 399 | 38 | 436 | 0.0 | 806 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025160 | Msa1025560 | 0.815506 | 8.927832e-52 | -8.615850e-47 |
| Msa0033220 | Msa1025560 | 0.809476 | 1.856707e-50 | -8.615850e-47 |
| Msa0035270 | Msa1025560 | 0.804384 | 2.216363e-49 | -8.615850e-47 |
| Msa0035340 | Msa1025560 | 0.822586 | 2.188196e-53 | -8.615850e-47 |
| Msa0035380 | Msa1025560 | 0.805977 | 1.028687e-49 | -8.615850e-47 |
| Msa0042640 | Msa1025560 | 0.810218 | 1.285750e-50 | -8.615850e-47 |
| Msa0077340 | Msa1025560 | 0.806809 | 6.868892e-50 | -8.615850e-47 |
| Msa0080820 | Msa1025560 | 0.802594 | 5.209234e-49 | -8.615850e-47 |
| Msa0620900 | Msa1025560 | 0.817081 | 3.966732e-52 | -8.615850e-47 |
| Msa0651550 | Msa1025560 | 0.803291 | 3.739289e-49 | -8.615850e-47 |
| Msa0716480 | Msa1025560 | 0.805289 | 1.434255e-49 | -8.615850e-47 |
| Msa0735780 | Msa1025560 | 0.802477 | 5.507936e-49 | -8.615850e-47 |
| Msa0740710 | Msa1025560 | 0.803165 | 3.969682e-49 | -8.615850e-47 |
| Msa0747000 | Msa1025560 | 0.805701 | 1.175789e-49 | -8.615850e-47 |
| Msa0752780 | Msa1025560 | 0.800937 | 1.139862e-48 | -8.615850e-47 |
| Msa0780910 | Msa1025560 | 0.809676 | 1.682181e-50 | -8.615850e-47 |
| Msa0792370 | Msa1025560 | 0.801384 | 9.235868e-49 | -8.615850e-47 |
| Msa0811690 | Msa1025560 | 0.812895 | 3.366918e-51 | -8.615850e-47 |
| Msa0821160 | Msa1025560 | 0.804895 | 1.734279e-49 | -8.615850e-47 |
| Msa0837460 | Msa1025560 | 0.802806 | 4.709964e-49 | -8.615850e-47 |
| Msa0125360 | Msa1025560 | 0.805439 | 1.333927e-49 | -8.615850e-47 |
| Msa0142430 | Msa1025560 | 0.801210 | 1.002669e-48 | -8.615850e-47 |
| Msa0154620 | Msa1025560 | 0.803207 | 3.892462e-49 | -8.615850e-47 |
| Msa0176060 | Msa1025560 | 0.822438 | 2.368332e-53 | -8.615850e-47 |
| Msa0218020 | Msa1025560 | 0.804498 | 2.098387e-49 | -8.615850e-47 |
| Msa0365210 | Msa1025560 | 0.832085 | 1.155741e-55 | -8.615850e-47 |
| Msa0381730 | Msa1025560 | 0.801643 | 8.172086e-49 | -8.615850e-47 |
| Msa0415600 | Msa1025560 | 0.804596 | 2.001988e-49 | -8.615850e-47 |
| Msa0431200 | Msa1025560 | 0.811744 | 6.007204e-51 | -8.615850e-47 |
| Msa1021590 | Msa1025560 | 0.806053 | 9.916438e-50 | -8.615850e-47 |
| Msa1025560 | Msa1034600 | 0.827140 | 1.844357e-54 | -8.615850e-47 |
| Msa1025560 | Msa1040150 | 0.811466 | 6.904251e-51 | -8.615850e-47 |
| Msa1025560 | Msa1044250 | 0.816402 | 5.632606e-52 | -8.615850e-47 |
| Msa1025560 | Msa1044680 | 0.801661 | 8.105353e-49 | -8.615850e-47 |
| Msa1025560 | Msa1064370 | 0.950323 | 2.086871e-108 | -8.615850e-47 |
| Msa1025560 | Msa1074370 | 0.807121 | 5.899679e-50 | -8.615850e-47 |
| Msa1025560 | Msa1082410 | 0.811033 | 8.569441e-51 | -8.615850e-47 |
| Msa1025560 | Msa1105640 | 0.817805 | 2.725587e-52 | -8.615850e-47 |
| Msa1025560 | Msa1109390 | 0.877891 | 4.365504e-69 | -8.615850e-47 |
| Msa1025560 | Msa1216340 | 0.819607 | 1.062590e-52 | -8.615850e-47 |
| Msa1025560 | Msa1262590 | 0.823843 | 1.113709e-53 | -8.615850e-47 |
| Msa1025560 | Msa1282260 | 0.806872 | 6.661969e-50 | -8.615850e-47 |
| Msa1025560 | Msa1349690 | 0.836617 | 8.427396e-57 | -8.615850e-47 |
| Msa1025560 | Msa1358290 | 0.838475 | 2.812513e-57 | -8.615850e-47 |
| Msa1025560 | Msa1383310 | 0.815215 | 1.036420e-51 | -8.615850e-47 |
| Msa1025560 | Msa1391500 | 0.800781 | 1.226991e-48 | -8.615850e-47 |
| Msa1025560 | Msa1392740 | 0.834098 | 3.646996e-56 | -8.615850e-47 |
| Msa1025560 | Msa1405460 | 0.819175 | 1.333004e-52 | -8.615850e-47 |
| Msa1025560 | Msa1407840 | 0.804788 | 1.825442e-49 | -8.615850e-47 |
| Msa1025560 | Msa1437810 | 0.808453 | 3.074174e-50 | -8.615850e-47 |
| Msa0330520 | Msa1025560 | 0.808313 | 3.292948e-50 | -8.615850e-47 |
| Msa0517250 | Msa1025560 | 0.803539 | 3.322363e-49 | -8.615850e-47 |
| Msa0520260 | Msa1025560 | 0.819833 | 9.436119e-53 | -8.615850e-47 |
| Msa0529030 | Msa1025560 | 0.818614 | 1.787891e-52 | -8.615850e-47 |
| Msa0530780 | Msa1025560 | 0.801158 | 1.027420e-48 | -8.615850e-47 |
| Msa0851850 | Msa1025560 | 0.808795 | 2.598141e-50 | -8.615850e-47 |
| Msa0894790 | Msa1025560 | 0.800964 | 1.125883e-48 | -8.615850e-47 |
| Msa0921590 | Msa1025560 | 0.827378 | 1.617456e-54 | -8.615850e-47 |
| Msa0972280 | Msa1025560 | 0.834960 | 2.214933e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025560 | MtrunA17_Chr7g0243541 | 87.469 | 399 | 7 | 1 | 1 | 399 | 54 | 409 | 0.0 | 701 |
| Msa1025560 | MtrunA17_Chr4g0004981 | 78.351 | 388 | 79 | 4 | 1 | 383 | 59 | 446 | 0.0 | 637 |
| Msa1025560 | MtrunA17_Chr2g0293201 | 42.890 | 429 | 192 | 8 | 8 | 389 | 46 | 468 | 1.43e-114 | 342 |
| Msa1025560 | MtrunA17_Chr8g0385291 | 50.904 | 332 | 153 | 7 | 47 | 374 | 166 | 491 | 2.04e-114 | 343 |
| Msa1025560 | MtrunA17_Chr4g0014911 | 45.596 | 386 | 194 | 8 | 10 | 386 | 87 | 465 | 2.93e-111 | 333 |
| Msa1025560 | MtrunA17_Chr4g0014901 | 48.193 | 332 | 163 | 6 | 48 | 374 | 257 | 584 | 8.18e-108 | 329 |
| Msa1025560 | MtrunA17_Chr3g0131071 | 48.476 | 328 | 159 | 7 | 47 | 369 | 234 | 556 | 2.06e-106 | 325 |
| Msa1025560 | MtrunA17_Chr1g0183881 | 39.640 | 333 | 190 | 6 | 47 | 374 | 131 | 457 | 2.23e-79 | 252 |
| Msa1025560 | MtrunA17_Chr8g0385681 | 28.440 | 218 | 141 | 5 | 61 | 276 | 50 | 254 | 1.85e-18 | 84.3 |
| Msa1025560 | MtrunA17_Chr3g0131581 | 26.136 | 264 | 167 | 6 | 19 | 267 | 12 | 262 | 2.39e-18 | 84.3 |
| Msa1025560 | MtrunA17_Chr8g0385691 | 28.230 | 209 | 135 | 5 | 61 | 267 | 47 | 242 | 3.21e-17 | 80.9 |
| Msa1025560 | MtrunA17_Chr3g0144911 | 28.444 | 225 | 139 | 7 | 63 | 273 | 110 | 326 | 3.86e-17 | 82.8 |
| Msa1025560 | MtrunA17_Chr5g0404711 | 26.792 | 265 | 160 | 9 | 23 | 273 | 48 | 292 | 4.57e-17 | 82.8 |
| Msa1025560 | MtrunA17_Chr4g0035391 | 28.054 | 221 | 133 | 8 | 63 | 267 | 107 | 317 | 5.22e-16 | 80.1 |
| Msa1025560 | MtrunA17_Chr4g0035381 | 26.941 | 219 | 138 | 7 | 63 | 267 | 84 | 294 | 6.84e-15 | 75.9 |
| Msa1025560 | MtrunA17_Chr4g0035361 | 26.339 | 224 | 145 | 6 | 63 | 273 | 1 | 217 | 1.57e-14 | 75.1 |
| Msa1025560 | MtrunA17_Chr1g0155521 | 26.484 | 219 | 139 | 8 | 63 | 267 | 112 | 322 | 2.13e-14 | 75.1 |
| Msa1025560 | MtrunA17_Chr3g0144891 | 26.786 | 224 | 144 | 6 | 63 | 273 | 97 | 313 | 2.65e-14 | 74.7 |
| Msa1025560 | MtrunA17_Chr3g0141821 | 27.273 | 220 | 136 | 8 | 63 | 267 | 93 | 303 | 2.91e-14 | 74.3 |
| Msa1025560 | MtrunA17_Chr8g0372651 | 27.232 | 224 | 143 | 6 | 63 | 273 | 79 | 295 | 8.01e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025560 | AT3G51670.1 | 75.989 | 379 | 89 | 1 | 5 | 383 | 28 | 404 | 0.0 | 607 |
| Msa1025560 | AT4G09160.2 | 47.644 | 382 | 183 | 10 | 10 | 382 | 265 | 638 | 4.88e-112 | 342 |
| Msa1025560 | AT4G09160.3 | 47.644 | 382 | 183 | 10 | 10 | 382 | 265 | 638 | 5.73e-112 | 342 |
| Msa1025560 | AT4G09160.1 | 47.644 | 382 | 183 | 10 | 10 | 382 | 290 | 663 | 6.70e-112 | 342 |
| Msa1025560 | AT1G72160.1 | 46.392 | 388 | 186 | 11 | 10 | 382 | 108 | 488 | 1.24e-111 | 336 |
| Msa1025560 | AT1G30690.1 | 44.957 | 347 | 173 | 8 | 40 | 379 | 197 | 532 | 3.80e-99 | 305 |
| Msa1025560 | AT1G30690.2 | 44.957 | 347 | 173 | 8 | 40 | 379 | 197 | 532 | 3.80e-99 | 305 |
| Msa1025560 | AT1G22530.2 | 43.284 | 335 | 172 | 9 | 47 | 374 | 318 | 641 | 7.30e-86 | 274 |
| Msa1025560 | AT1G22530.1 | 43.284 | 335 | 172 | 9 | 47 | 374 | 352 | 675 | 1.53e-85 | 274 |
| Msa1025560 | AT1G72150.1 | 39.528 | 339 | 188 | 10 | 47 | 379 | 243 | 570 | 5.81e-76 | 246 |
| Msa1025560 | AT2G21540.3 | 28.444 | 225 | 139 | 7 | 63 | 273 | 95 | 311 | 4.68e-17 | 83.6 |
| Msa1025560 | AT2G21540.5 | 28.444 | 225 | 139 | 7 | 63 | 273 | 95 | 311 | 4.68e-17 | 83.6 |
| Msa1025560 | AT2G21540.6 | 28.444 | 225 | 139 | 7 | 63 | 273 | 95 | 311 | 4.86e-17 | 83.2 |
| Msa1025560 | AT2G21540.2 | 28.444 | 225 | 139 | 7 | 63 | 273 | 95 | 311 | 4.86e-17 | 83.2 |
| Msa1025560 | AT2G21540.1 | 28.444 | 225 | 139 | 7 | 63 | 273 | 95 | 311 | 4.86e-17 | 83.2 |
| Msa1025560 | AT2G21540.4 | 28.444 | 225 | 139 | 7 | 63 | 273 | 95 | 311 | 4.86e-17 | 83.2 |
| Msa1025560 | AT4G39180.3 | 28.444 | 225 | 139 | 7 | 63 | 273 | 96 | 312 | 5.88e-17 | 83.2 |
| Msa1025560 | AT4G39180.2 | 28.444 | 225 | 139 | 7 | 63 | 273 | 96 | 312 | 5.88e-17 | 83.2 |
| Msa1025560 | AT4G39180.1 | 28.444 | 225 | 139 | 7 | 63 | 273 | 96 | 312 | 6.17e-17 | 83.2 |
| Msa1025560 | AT4G39170.1 | 27.679 | 224 | 137 | 8 | 34 | 242 | 81 | 294 | 1.62e-16 | 82.0 |
| Msa1025560 | AT4G39170.2 | 27.679 | 224 | 137 | 8 | 34 | 242 | 81 | 294 | 1.71e-16 | 81.6 |
| Msa1025560 | AT4G34580.2 | 27.876 | 226 | 139 | 8 | 63 | 273 | 88 | 304 | 2.48e-16 | 81.3 |
| Msa1025560 | AT4G34580.1 | 27.876 | 226 | 139 | 8 | 63 | 273 | 88 | 304 | 2.48e-16 | 81.3 |
| Msa1025560 | AT4G36490.1 | 27.556 | 225 | 141 | 7 | 63 | 273 | 78 | 294 | 5.96e-16 | 80.1 |
| Msa1025560 | AT2G18180.2 | 28.444 | 225 | 139 | 7 | 63 | 273 | 81 | 297 | 1.77e-15 | 78.6 |
| Msa1025560 | AT2G18180.1 | 28.444 | 225 | 139 | 7 | 63 | 273 | 81 | 297 | 2.14e-15 | 78.2 |
| Msa1025560 | AT2G16380.2 | 27.119 | 295 | 174 | 13 | 9 | 273 | 21 | 304 | 4.36e-15 | 77.4 |
| Msa1025560 | AT2G16380.1 | 27.119 | 295 | 174 | 13 | 9 | 273 | 21 | 304 | 4.36e-15 | 77.4 |
| Msa1025560 | AT1G19650.3 | 27.753 | 227 | 138 | 8 | 63 | 273 | 104 | 320 | 1.17e-14 | 75.9 |
| Msa1025560 | AT1G19650.1 | 27.753 | 227 | 138 | 8 | 63 | 273 | 104 | 320 | 1.35e-14 | 75.9 |
| Msa1025560 | AT2G18180.4 | 28.125 | 224 | 139 | 7 | 64 | 273 | 11 | 226 | 1.70e-14 | 75.5 |
| Msa1025560 | AT2G18180.3 | 28.125 | 224 | 139 | 7 | 64 | 273 | 11 | 226 | 2.11e-14 | 75.1 |
| Msa1025560 | AT2G21520.2 | 25.641 | 195 | 122 | 6 | 63 | 242 | 114 | 300 | 8.35e-14 | 73.6 |
| Msa1025560 | AT2G21520.3 | 25.641 | 195 | 122 | 6 | 63 | 242 | 114 | 300 | 8.35e-14 | 73.6 |
| Msa1025560 | AT2G21520.1 | 25.641 | 195 | 122 | 6 | 63 | 242 | 110 | 296 | 9.43e-14 | 73.6 |
| Msa1025560 | AT4G08690.2 | 24.413 | 213 | 142 | 5 | 59 | 267 | 41 | 238 | 3.40e-13 | 70.1 |
| Msa1025560 | AT4G08690.1 | 24.413 | 213 | 142 | 5 | 59 | 267 | 41 | 238 | 3.40e-13 | 70.1 |
| Msa1025560 | AT4G08690.3 | 24.413 | 213 | 142 | 5 | 59 | 267 | 41 | 238 | 3.40e-13 | 70.1 |
| Msa1025560 | AT1G01630.1 | 23.364 | 214 | 145 | 4 | 58 | 267 | 47 | 245 | 3.75e-13 | 69.3 |
| Msa1025560 | AT1G55840.1 | 25.581 | 215 | 130 | 8 | 64 | 262 | 39 | 239 | 2.19e-12 | 68.2 |
| Msa1025560 | AT1G55840.2 | 25.581 | 215 | 130 | 8 | 64 | 262 | 12 | 212 | 2.26e-12 | 67.8 |
| Msa1025560 | AT2G18180.5 | 28.218 | 202 | 123 | 7 | 86 | 273 | 6 | 199 | 2.07e-11 | 65.9 |
Find 84 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTGAGTTCACTGTTAA+AGG | 0.184177 | 7_1:+56320106 | Msa1025560:CDS |
| GTGAACTCAGAAGCTGGTTT+TGG | 0.239830 | 7_1:-56320097 | None:intergenic |
| TTCCATTAATGTTGTGACTA+TGG | 0.244429 | 7_1:-56318724 | None:intergenic |
| AACCATAGTCACAACATTAA+TGG | 0.252522 | 7_1:+56318722 | Msa1025560:exon |
| TTTGAGGTTGGAAATGAAAT+AGG | 0.258263 | 7_1:-56318784 | None:intergenic |
| ACCTTACGAGCAACCATTTC+AGG | 0.266158 | 7_1:-56319356 | None:intergenic |
| CTTTCTTGGAGGAAAGAATT+TGG | 0.299122 | 7_1:+56318996 | Msa1025560:CDS |
| GTGTAGCTAGCTTCTGCATT+TGG | 0.299367 | 7_1:-56320625 | None:intergenic |
| TGCTTGTGAAGTGTCTTTCT+TGG | 0.307414 | 7_1:+56318982 | Msa1025560:CDS |
| AAATGTTGTGGATGAAGATT+TGG | 0.311161 | 7_1:+56319025 | Msa1025560:CDS |
| TGTAGTTGGAGGCTGGGATT+TGG | 0.312615 | 7_1:+56320582 | Msa1025560:CDS |
| GATTCAAGTTACTGATCTTA+AGG | 0.332587 | 7_1:+56319268 | Msa1025560:CDS |
| ACAAGTGAATTGAGTGATTA+TGG | 0.341620 | 7_1:+56321081 | Msa1025560:three_prime_UTR |
| TTCCATGCAGAAATTTCATC+TGG | 0.350598 | 7_1:+56318577 | Msa1025560:five_prime_UTR |
| ATCAAAAGAAGCCGGCATTA+TGG | 0.356633 | 7_1:+56320711 | Msa1025560:CDS |
| GTGGTGTATTAGTACTTGTT+TGG | 0.360457 | 7_1:+56320929 | Msa1025560:three_prime_UTR |
| TTAGTTCTTTGAGTCAGAAA+TGG | 0.368588 | 7_1:-56319719 | None:intergenic |
| TTCTTGGGAGTTTCTAGAAA+TGG | 0.368642 | 7_1:-56318674 | None:intergenic |
| GAGAATATTCCAATTCAATA+TGG | 0.371553 | 7_1:+56320037 | Msa1025560:CDS |
| CTCAGTCCACCATATTGAAT+TGG | 0.383764 | 7_1:-56320046 | None:intergenic |
| TGTAGCTAGCTTCTGCATTT+GGG | 0.386593 | 7_1:-56320624 | None:intergenic |
| ACAACCCTTAACTCACTCTT+AGG | 0.396909 | 7_1:-56319296 | None:intergenic |
| GAGCAAGTTTGTGATCTCTA+AGG | 0.402946 | 7_1:+56319742 | Msa1025560:CDS |
| TCAAGATAACTATCCTGAAA+TGG | 0.404693 | 7_1:+56319343 | Msa1025560:CDS |
| GGGAGATTGTAGTTGGAGGC+TGG | 0.407967 | 7_1:+56320575 | Msa1025560:CDS |
| AATCCCTCATTCACCATCAA+TGG | 0.429468 | 7_1:+56318610 | Msa1025560:five_prime_UTR |
| TTTCTAGAAATGGTGTGCTT+AGG | 0.436314 | 7_1:-56318664 | None:intergenic |
| TATTGAATTGGAATATTCTC+AGG | 0.440014 | 7_1:-56320034 | None:intergenic |
| GAGTGATCTTCTTCCATTGA+TGG | 0.440321 | 7_1:-56318623 | None:intergenic |
| AATGTTGTGGATGAAGATTT+GGG | 0.445253 | 7_1:+56319026 | Msa1025560:CDS |
| TCCTGAAATGGTTGCTCGTA+AGG | 0.456947 | 7_1:+56319355 | Msa1025560:CDS |
| GGAGATTGTAGTTGGAGGCT+GGG | 0.463853 | 7_1:+56320576 | Msa1025560:CDS |
| AAAGTGAACATACAAATAGA+AGG | 0.473146 | 7_1:+56320136 | Msa1025560:CDS |
| ATATGCCTAAGAGTGAGTTA+AGG | 0.474991 | 7_1:+56319291 | Msa1025560:CDS |
| TCTTCCATTGATGGTGAATG+AGG | 0.482387 | 7_1:-56318614 | None:intergenic |
| ATCAAAGAATTCACCCCACC+AGG | 0.485860 | 7_1:-56319248 | None:intergenic |
| CTACACTATAGAAGTTGAAA+AGG | 0.488723 | 7_1:+56320642 | Msa1025560:CDS |
| TATGCCTAAGAGTGAGTTAA+GGG | 0.489546 | 7_1:+56319292 | Msa1025560:CDS |
| CCTGTGTGTTACAATCATTA+TGG | 0.491385 | 7_1:+56319107 | Msa1025560:CDS |
| TTGTGAAGTGTCTTTCTTGG+AGG | 0.498038 | 7_1:+56318985 | Msa1025560:CDS |
| ATCAAGTGGGAGATTGTAGT+TGG | 0.499306 | 7_1:+56320568 | Msa1025560:CDS |
| AAAAGCATTGAAACAGTTGA+AGG | 0.500192 | 7_1:+56318818 | Msa1025560:CDS |
| TTTCTCTGAGGATTTGAGGT+TGG | 0.500900 | 7_1:-56318796 | None:intergenic |
| TTATGGTGTGTTCAAAGATA+AGG | 0.503248 | 7_1:+56319124 | Msa1025560:CDS |
| CTTCCATTGATGGTGAATGA+GGG | 0.503374 | 7_1:-56318613 | None:intergenic |
| TATCAAAATTCTTCAAGAGC+AGG | 0.506972 | 7_1:-56321123 | None:intergenic |
| TACTCATGGGTTTGATAGAG+AGG | 0.507545 | 7_1:+56319079 | Msa1025560:CDS |
| TTGGGATTCAAAGAGCTTGA+AGG | 0.513195 | 7_1:+56319044 | Msa1025560:CDS |
| TTAACAGTGAACTCAGAAGC+TGG | 0.523617 | 7_1:-56320103 | None:intergenic |
| AGGCTTAATTGCATATCAGA+TGG | 0.543533 | 7_1:-56320817 | None:intergenic |
| TGGAAATTGAGAATGAAGGT+TGG | 0.546929 | 7_1:-56318559 | None:intergenic |
| GACCGAGAGTACCATAATGC+CGG | 0.550985 | 7_1:-56320722 | None:intergenic |
| CGGTCGATAACTCTGCCTCT+AGG | 0.552178 | 7_1:+56320740 | Msa1025560:CDS |
| TTTACAGTTTAAACCTGGTG+GGG | 0.553174 | 7_1:+56319235 | Msa1025560:CDS |
| TAAGCCTCAAAATCAAATAG+TGG | 0.553201 | 7_1:+56320833 | Msa1025560:CDS |
| AGCCGGCATTATGGTACTCT+CGG | 0.554951 | 7_1:+56320720 | Msa1025560:CDS |
| TGCATGGAAATTGAGAATGA+AGG | 0.564725 | 7_1:-56318563 | None:intergenic |
| ACTCATGGGTTTGATAGAGA+GGG | 0.567192 | 7_1:+56319080 | Msa1025560:CDS |
| ATTTGGTGCTGAAAATGTTG+TGG | 0.567986 | 7_1:+56319013 | Msa1025560:CDS |
| AATATTCCAATTCAATATGG+TGG | 0.569255 | 7_1:+56320040 | Msa1025560:CDS |
| GATCAAACTAACACCCCACA+TGG | 0.577251 | 7_1:-56318880 | None:intergenic |
| AACAACAATGGTTCCATGTG+GGG | 0.581025 | 7_1:+56318867 | Msa1025560:CDS |
| TCCATGCAGAAATTTCATCT+GGG | 0.581919 | 7_1:+56318578 | Msa1025560:five_prime_UTR |
| TCATTCACATCAAAAGAAGC+CGG | 0.584067 | 7_1:+56320703 | Msa1025560:CDS |
| GGGTTCAAGTTCTAGAGAGA+GGG | 0.585652 | 7_1:+56319204 | Msa1025560:CDS |
| AAGTGGGAGATTGTAGTTGG+AGG | 0.586468 | 7_1:+56320571 | Msa1025560:CDS |
| CAACAACAATGGTTCCATGT+GGG | 0.588302 | 7_1:+56318866 | Msa1025560:CDS |
| AGATAAGGAAATGTATGAGA+AGG | 0.595028 | 7_1:+56319139 | Msa1025560:CDS |
| CCATAATGATTGTAACACAC+AGG | 0.599317 | 7_1:-56319107 | None:intergenic |
| CTATAGAAGTTGAAAAGGCA+AGG | 0.600332 | 7_1:+56320647 | Msa1025560:CDS |
| CATACAAATAGAAGGAGTTG+AGG | 0.610399 | 7_1:+56320144 | Msa1025560:CDS |
| AGGGTTCAAGTTCTAGAGAG+AGG | 0.617059 | 7_1:+56319203 | Msa1025560:CDS |
| ACCCAGATGAAATTTCTGCA+TGG | 0.617097 | 7_1:-56318579 | None:intergenic |
| TCTGATGAAATCAACAACAA+TGG | 0.619761 | 7_1:+56318855 | Msa1025560:CDS |
| TACAACATGCTGAAATACCA+TGG | 0.625322 | 7_1:-56319683 | None:intergenic |
| AGAGTGGTGCAACAATCAAG+TGG | 0.626220 | 7_1:+56320554 | Msa1025560:intron |
| GGACCATTCTGAAAATCACT+AGG | 0.626931 | 7_1:-56320073 | None:intergenic |
| TCTGAGTTCACTGTTAAAGG+AGG | 0.633144 | 7_1:+56320109 | Msa1025560:CDS |
| AAGTTTGTGATCTCTAAGGA+AGG | 0.634705 | 7_1:+56319746 | Msa1025560:CDS |
| TGGGGTGTTAGTTTGATCAA+AGG | 0.650022 | 7_1:+56318885 | Msa1025560:CDS |
| GAGTGGTGCAACAATCAAGT+GGG | 0.657297 | 7_1:+56320555 | Msa1025560:intron |
| TCAACAACAATGGTTCCATG+TGG | 0.658931 | 7_1:+56318865 | Msa1025560:CDS |
| CATAATGATTGTAACACACA+GGG | 0.659937 | 7_1:-56319106 | None:intergenic |
| TGGTGTGCTTAGGATTGACA+TGG | 0.671206 | 7_1:-56318654 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTTGTTTTGTTATTT+TGG | + | chr7_1:56319405-56319424 | Msa1025560:intron | 15.0% |
| !!! | TTTTTTTGTTCAGATTTATA+AGG | + | chr7_1:56320011-56320030 | Msa1025560:intron | 15.0% |
| !!! | AAATTTAACTACATTTTACA+CGG | + | chr7_1:56320258-56320277 | Msa1025560:intron | 15.0% |
| !! | TGATTTAATCTTGTTAAAAA+AGG | + | chr7_1:56320900-56320919 | Msa1025560:three_prime_UTR | 15.0% |
| !!! | TTATTTTGGTGTTGTTTATT+TGG | + | chr7_1:56319419-56319438 | Msa1025560:intron | 20.0% |
| !! | ACATAATTCAGTGTAATTAT+AGG | - | chr7_1:56319531-56319550 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | + | chr7_1:56319550-56319569 | Msa1025560:intron | 20.0% |
| !! | TTTCATGTCATACTAAATAT+AGG | - | chr7_1:56319627-56319646 | None:intergenic | 20.0% |
| !!! | ATAAACATCATTGATGTTTT+TGG | - | chr7_1:56319802-56319821 | None:intergenic | 20.0% |
| !!! | AGATGTAATTTTAGAAAATC+TGG | + | chr7_1:56319830-56319849 | Msa1025560:intron | 20.0% |
| !! | ACAATAATAGAAAAATTGTG+GGG | - | chr7_1:56319968-56319987 | None:intergenic | 20.0% |
| !! | CACAATAATAGAAAAATTGT+GGG | - | chr7_1:56319969-56319988 | None:intergenic | 20.0% |
| !! | ACGTTAAAATTTGTAGTTAA+CGG | - | chr7_1:56320351-56320370 | None:intergenic | 20.0% |
| !!! | TAATACTATTATGTTTTTGC+TGG | + | chr7_1:56320865-56320884 | Msa1025560:three_prime_UTR | 20.0% |
| !! | ATGTAAAAAATAGTGAGAAA+TGG | + | chr7_1:56320958-56320977 | Msa1025560:three_prime_UTR | 20.0% |
| !!! | ATTTTGTTTGATACATAGAC+AGG | - | chr7_1:56319935-56319954 | None:intergenic | 25.0% |
| ! | GCACAATAATAGAAAAATTG+TGG | - | chr7_1:56319970-56319989 | None:intergenic | 25.0% |
| ! | TATTGAATTGGAATATTCTC+AGG | - | chr7_1:56320037-56320056 | None:intergenic | 25.0% |
| ! | GAGAATATTCCAATTCAATA+TGG | + | chr7_1:56320037-56320056 | Msa1025560:CDS | 25.0% |
| ! | AATATTCCAATTCAATATGG+TGG | + | chr7_1:56320040-56320059 | Msa1025560:CDS | 25.0% |
| ! | AAAGTGAACATACAAATAGA+AGG | + | chr7_1:56320136-56320155 | Msa1025560:CDS | 25.0% |
| ! | TCTTATTAGAGACTATGTAA+TGG | + | chr7_1:56320192-56320211 | Msa1025560:intron | 25.0% |
| ! | TAATGGTTACTTATGGTTTA+AGG | + | chr7_1:56320209-56320228 | Msa1025560:intron | 25.0% |
| !!! | GTGTATTGTTGTTGTATTTT+CGG | - | chr7_1:56320798-56320817 | None:intergenic | 25.0% |
| ! | TTGTTAAAAAAGGAACTTAG+TGG | + | chr7_1:56320910-56320929 | Msa1025560:three_prime_UTR | 25.0% |
| !!! | ATGAAGGTTGGTTTTGAAAT+GGG | - | chr7_1:56318550-56318569 | None:intergenic | 30.0% |
| !!! | AATGAAGGTTGGTTTTGAAA+TGG | - | chr7_1:56318551-56318570 | None:intergenic | 30.0% |
| !!! | GTTCTTTTGTTTGGTTTTGA+GGG | - | chr7_1:56318705-56318724 | None:intergenic | 30.0% |
| AACCATAGTCACAACATTAA+TGG | + | chr7_1:56318722-56318741 | Msa1025560:exon | 30.0% | |
| TTCCATTAATGTTGTGACTA+TGG | - | chr7_1:56318727-56318746 | None:intergenic | 30.0% | |
| ! | TTTGAGGTTGGAAATGAAAT+AGG | - | chr7_1:56318787-56318806 | None:intergenic | 30.0% |
| !!! | TTTCAATGCTTTTTTCTCTG+AGG | - | chr7_1:56318811-56318830 | None:intergenic | 30.0% |
| !! | AAAAGCATTGAAACAGTTGA+AGG | + | chr7_1:56318818-56318837 | Msa1025560:CDS | 30.0% |
| TCTGATGAAATCAACAACAA+TGG | + | chr7_1:56318855-56318874 | Msa1025560:CDS | 30.0% | |
| AAATGTTGTGGATGAAGATT+TGG | + | chr7_1:56319025-56319044 | Msa1025560:CDS | 30.0% | |
| AATGTTGTGGATGAAGATTT+GGG | + | chr7_1:56319026-56319045 | Msa1025560:CDS | 30.0% | |
| CATAATGATTGTAACACACA+GGG | - | chr7_1:56319109-56319128 | None:intergenic | 30.0% | |
| TTATGGTGTGTTCAAAGATA+AGG | + | chr7_1:56319124-56319143 | Msa1025560:CDS | 30.0% | |
| AGATAAGGAAATGTATGAGA+AGG | + | chr7_1:56319139-56319158 | Msa1025560:CDS | 30.0% | |
| ! | GAAATGTATGAGAAGGTTTT+TGG | + | chr7_1:56319146-56319165 | Msa1025560:CDS | 30.0% |
| !! | AGTTGAAGAAGTTTTTGAGA+TGG | + | chr7_1:56319180-56319199 | Msa1025560:CDS | 30.0% |
| ! | AAGCTTTTACAGTTTAAACC+TGG | + | chr7_1:56319230-56319249 | Msa1025560:CDS | 30.0% |
| ! | TTTTACAGTTTAAACCTGGT+GGG | + | chr7_1:56319234-56319253 | Msa1025560:CDS | 30.0% |
| ! | GATTCAAGTTACTGATCTTA+AGG | + | chr7_1:56319268-56319287 | Msa1025560:CDS | 30.0% |
| TCAAGATAACTATCCTGAAA+TGG | + | chr7_1:56319343-56319362 | Msa1025560:CDS | 30.0% | |
| GAACAAAAACAATGTCATCA+AGG | - | chr7_1:56319383-56319402 | None:intergenic | 30.0% | |
| ! | TTAGTTCTTTGAGTCAGAAA+TGG | - | chr7_1:56319722-56319741 | None:intergenic | 30.0% |
| GACTATGTAATGGTTACTTA+TGG | + | chr7_1:56320202-56320221 | Msa1025560:intron | 30.0% | |
| !! | CGTGATTAGTCACAATTTTT+AGG | + | chr7_1:56320368-56320387 | Msa1025560:intron | 30.0% |
| ! | AGTTGAAACATCTGAAATCA+GGG | + | chr7_1:56320408-56320427 | Msa1025560:intron | 30.0% |
| ! | TCACTAATTGTTGATTAGAG+TGG | + | chr7_1:56320538-56320557 | Msa1025560:intron | 30.0% |
| CTACACTATAGAAGTTGAAA+AGG | + | chr7_1:56320642-56320661 | Msa1025560:CDS | 30.0% | |
| TAAGCCTCAAAATCAAATAG+TGG | + | chr7_1:56320833-56320852 | Msa1025560:CDS | 30.0% | |
| ACAAGTGAATTGAGTGATTA+TGG | + | chr7_1:56321081-56321100 | Msa1025560:three_prime_UTR | 30.0% | |
| TATCAAAATTCTTCAAGAGC+AGG | - | chr7_1:56321126-56321145 | None:intergenic | 30.0% | |
| !!! | TGAAGGTTGGTTTTGAAATG+GGG | - | chr7_1:56318549-56318568 | None:intergenic | 35.0% |
| TGGAAATTGAGAATGAAGGT+TGG | - | chr7_1:56318562-56318581 | None:intergenic | 35.0% | |
| TGCATGGAAATTGAGAATGA+AGG | - | chr7_1:56318566-56318585 | None:intergenic | 35.0% | |
| TTCCATGCAGAAATTTCATC+TGG | + | chr7_1:56318577-56318596 | Msa1025560:five_prime_UTR | 35.0% | |
| TCCATGCAGAAATTTCATCT+GGG | + | chr7_1:56318578-56318597 | Msa1025560:five_prime_UTR | 35.0% | |
| ! | TTTCTAGAAATGGTGTGCTT+AGG | - | chr7_1:56318667-56318686 | None:intergenic | 35.0% |
| ! | TTCTTGGGAGTTTCTAGAAA+TGG | - | chr7_1:56318677-56318696 | None:intergenic | 35.0% |
| !!! | GTTTTGAGGGAGTTTTTCTT+GGG | - | chr7_1:56318692-56318711 | None:intergenic | 35.0% |
| !!! | GGTTCTTTTGTTTGGTTTTG+AGG | - | chr7_1:56318706-56318725 | None:intergenic | 35.0% |
| ! | GTGACTATGGTTCTTTTGTT+TGG | - | chr7_1:56318714-56318733 | None:intergenic | 35.0% |
| !!! | CTTTTTTCTCTGAGGATTTG+AGG | - | chr7_1:56318803-56318822 | None:intergenic | 35.0% |
| CTTTCTTGGAGGAAAGAATT+TGG | + | chr7_1:56318996-56319015 | Msa1025560:CDS | 35.0% | |
| !! | ATTTGGTGCTGAAAATGTTG+TGG | + | chr7_1:56319013-56319032 | Msa1025560:CDS | 35.0% |
| ! | GTGTTGTAGCTTTTACTCAT+GGG | + | chr7_1:56319066-56319085 | Msa1025560:CDS | 35.0% |
| CCATAATGATTGTAACACAC+AGG | - | chr7_1:56319110-56319129 | None:intergenic | 35.0% | |
| CCTGTGTGTTACAATCATTA+TGG | + | chr7_1:56319107-56319126 | Msa1025560:CDS | 35.0% | |
| !!! | TGAAGAAGTTTTTGAGATGG+AGG | + | chr7_1:56319183-56319202 | Msa1025560:CDS | 35.0% |
| !!! | GAAGAAGTTTTTGAGATGGA+GGG | + | chr7_1:56319184-56319203 | Msa1025560:CDS | 35.0% |
| ! | CTTTTACAGTTTAAACCTGG+TGG | + | chr7_1:56319233-56319252 | Msa1025560:CDS | 35.0% |
| TTTACAGTTTAAACCTGGTG+GGG | + | chr7_1:56319235-56319254 | Msa1025560:CDS | 35.0% | |
| ATATGCCTAAGAGTGAGTTA+AGG | + | chr7_1:56319291-56319310 | Msa1025560:CDS | 35.0% | |
| TATGCCTAAGAGTGAGTTAA+GGG | + | chr7_1:56319292-56319311 | Msa1025560:CDS | 35.0% | |
| ! | AGAAGTGTATGTGCTTCATA+GGG | - | chr7_1:56319476-56319495 | None:intergenic | 35.0% |
| ! | AAGAAGTGTATGTGCTTCAT+AGG | - | chr7_1:56319477-56319496 | None:intergenic | 35.0% |
| TATGAAGCACATACACTTCT+TGG | + | chr7_1:56319476-56319495 | Msa1025560:intron | 35.0% | |
| GTAATTATAGGTGTCAGTGT+CGG | - | chr7_1:56319519-56319538 | None:intergenic | 35.0% | |
| TCTCAAATTATTAGCGGTGT+CGG | + | chr7_1:56319556-56319575 | Msa1025560:intron | 35.0% | |
| ! | AGATTTTCATCAATGTGCCA+TGG | + | chr7_1:56319666-56319685 | Msa1025560:intron | 35.0% |
| TACAACATGCTGAAATACCA+TGG | - | chr7_1:56319686-56319705 | None:intergenic | 35.0% | |
| ! | AAGTTTGTGATCTCTAAGGA+AGG | + | chr7_1:56319746-56319765 | Msa1025560:CDS | 35.0% |
| AATCTGGTTGTGATTCTTCA+TGG | + | chr7_1:56319846-56319865 | Msa1025560:intron | 35.0% | |
| TTTGTGACTGTTTCCTTTCT+AGG | + | chr7_1:56319888-56319907 | Msa1025560:intron | 35.0% | |
| AGCAAAAGTAAAGCCTAGAA+AGG | - | chr7_1:56319904-56319923 | None:intergenic | 35.0% | |
| CATACAAATAGAAGGAGTTG+AGG | + | chr7_1:56320144-56320163 | Msa1025560:CDS | 35.0% | |
| AATTTGTAGTTAACGGTAGC+TGG | - | chr7_1:56320344-56320363 | None:intergenic | 35.0% | |
| ! | CAGTTGAAACATCTGAAATC+AGG | + | chr7_1:56320407-56320426 | Msa1025560:intron | 35.0% |
| GTAGCAAATTGCTTTCACAT+TGG | - | chr7_1:56320490-56320509 | None:intergenic | 35.0% | |
| CTATAGAAGTTGAAAAGGCA+AGG | + | chr7_1:56320647-56320666 | Msa1025560:CDS | 35.0% | |
| TCATTCACATCAAAAGAAGC+CGG | + | chr7_1:56320703-56320722 | Msa1025560:CDS | 35.0% | |
| AGGCTTAATTGCATATCAGA+TGG | - | chr7_1:56320820-56320839 | None:intergenic | 35.0% | |
| !! | GTGACCACTATTTGATTTTG+AGG | - | chr7_1:56320840-56320859 | None:intergenic | 35.0% |
| GTGGTGTATTAGTACTTGTT+TGG | + | chr7_1:56320929-56320948 | Msa1025560:three_prime_UTR | 35.0% | |
| !! | ATTGTGATGAGTTTTGTCAG+AGG | + | chr7_1:56321025-56321044 | Msa1025560:three_prime_UTR | 35.0% |
| !! | TTGTGATGAGTTTTGTCAGA+GGG | + | chr7_1:56321026-56321045 | Msa1025560:three_prime_UTR | 35.0% |
| ACCCAGATGAAATTTCTGCA+TGG | - | chr7_1:56318582-56318601 | None:intergenic | 40.0% | |
| AATCCCTCATTCACCATCAA+TGG | + | chr7_1:56318610-56318629 | Msa1025560:five_prime_UTR | 40.0% | |
| !! | CTTCCATTGATGGTGAATGA+GGG | - | chr7_1:56318616-56318635 | None:intergenic | 40.0% |
| !! | TCTTCCATTGATGGTGAATG+AGG | - | chr7_1:56318617-56318636 | None:intergenic | 40.0% |
| GAGTGATCTTCTTCCATTGA+TGG | - | chr7_1:56318626-56318645 | None:intergenic | 40.0% | |
| !!! | GGTTTTGAGGGAGTTTTTCT+TGG | - | chr7_1:56318693-56318712 | None:intergenic | 40.0% |
| ! | TTTCTCTGAGGATTTGAGGT+TGG | - | chr7_1:56318799-56318818 | None:intergenic | 40.0% |
| TCAACAACAATGGTTCCATG+TGG | + | chr7_1:56318865-56318884 | Msa1025560:CDS | 40.0% | |
| CAACAACAATGGTTCCATGT+GGG | + | chr7_1:56318866-56318885 | Msa1025560:CDS | 40.0% | |
| AACAACAATGGTTCCATGTG+GGG | + | chr7_1:56318867-56318886 | Msa1025560:CDS | 40.0% | |
| ! | TGGGGTGTTAGTTTGATCAA+AGG | + | chr7_1:56318885-56318904 | Msa1025560:CDS | 40.0% |
| ! | TGCTTGTGAAGTGTCTTTCT+TGG | + | chr7_1:56318982-56319001 | Msa1025560:CDS | 40.0% |
| ! | TTGTGAAGTGTCTTTCTTGG+AGG | + | chr7_1:56318985-56319004 | Msa1025560:CDS | 40.0% |
| TTGGGATTCAAAGAGCTTGA+AGG | + | chr7_1:56319044-56319063 | Msa1025560:CDS | 40.0% | |
| !! | GGTGTTGTAGCTTTTACTCA+TGG | + | chr7_1:56319065-56319084 | Msa1025560:CDS | 40.0% |
| TACTCATGGGTTTGATAGAG+AGG | + | chr7_1:56319079-56319098 | Msa1025560:CDS | 40.0% | |
| ACTCATGGGTTTGATAGAGA+GGG | + | chr7_1:56319080-56319099 | Msa1025560:CDS | 40.0% | |
| ACAACCCTTAACTCACTCTT+AGG | - | chr7_1:56319299-56319318 | None:intergenic | 40.0% | |
| TGTAACCTATGACGCAGATA+CGG | - | chr7_1:56319604-56319623 | None:intergenic | 40.0% | |
| GAGCAAGTTTGTGATCTCTA+AGG | + | chr7_1:56319742-56319761 | Msa1025560:CDS | 40.0% | |
| CTCAGTCCACCATATTGAAT+TGG | - | chr7_1:56320049-56320068 | None:intergenic | 40.0% | |
| ! | CGACCTAGTGATTTTCAGAA+TGG | + | chr7_1:56320070-56320089 | Msa1025560:CDS | 40.0% |
| ! | GGACCATTCTGAAAATCACT+AGG | - | chr7_1:56320076-56320095 | None:intergenic | 40.0% |
| !!! | TGAACTCAGAAGCTGGTTTT+GGG | - | chr7_1:56320099-56320118 | None:intergenic | 40.0% |
| TTAACAGTGAACTCAGAAGC+TGG | - | chr7_1:56320106-56320125 | None:intergenic | 40.0% | |
| GCTTCTGAGTTCACTGTTAA+AGG | + | chr7_1:56320106-56320125 | Msa1025560:CDS | 40.0% | |
| TCTGAGTTCACTGTTAAAGG+AGG | + | chr7_1:56320109-56320128 | Msa1025560:CDS | 40.0% | |
| !!! | AGGTTCTGAGTTCGAACTTT+TGG | + | chr7_1:56320229-56320248 | Msa1025560:intron | 40.0% |
| ATCAAGTGGGAGATTGTAGT+TGG | + | chr7_1:56320568-56320587 | Msa1025560:CDS | 40.0% | |
| ! | TGTAGCTAGCTTCTGCATTT+GGG | - | chr7_1:56320627-56320646 | None:intergenic | 40.0% |
| ATCAAAAGAAGCCGGCATTA+TGG | + | chr7_1:56320711-56320730 | Msa1025560:CDS | 40.0% | |
| !!! | AGCGACTTTTTTCTTCCTAG+AGG | - | chr7_1:56320758-56320777 | None:intergenic | 40.0% |
| TGGTGTGCTTAGGATTGACA+TGG | - | chr7_1:56318657-56318676 | None:intergenic | 45.0% | |
| GATCAAACTAACACCCCACA+TGG | - | chr7_1:56318883-56318902 | None:intergenic | 45.0% | |
| !! | AGGGTTCAAGTTCTAGAGAG+AGG | + | chr7_1:56319203-56319222 | Msa1025560:CDS | 45.0% |
| !! | GGGTTCAAGTTCTAGAGAGA+GGG | + | chr7_1:56319204-56319223 | Msa1025560:CDS | 45.0% |
| ATCAAAGAATTCACCCCACC+AGG | - | chr7_1:56319251-56319270 | None:intergenic | 45.0% | |
| TCCTGAAATGGTTGCTCGTA+AGG | + | chr7_1:56319355-56319374 | Msa1025560:CDS | 45.0% | |
| ACCTTACGAGCAACCATTTC+AGG | - | chr7_1:56319359-56319378 | None:intergenic | 45.0% | |
| !!! | AACTCAGAAGCTGGTTTTGG+GGG | - | chr7_1:56320097-56320116 | None:intergenic | 45.0% |
| !!! | GAACTCAGAAGCTGGTTTTG+GGG | - | chr7_1:56320098-56320117 | None:intergenic | 45.0% |
| !! | GTGAACTCAGAAGCTGGTTT+TGG | - | chr7_1:56320100-56320119 | None:intergenic | 45.0% |
| AGAGTGGTGCAACAATCAAG+TGG | + | chr7_1:56320554-56320573 | Msa1025560:intron | 45.0% | |
| GAGTGGTGCAACAATCAAGT+GGG | + | chr7_1:56320555-56320574 | Msa1025560:intron | 45.0% | |
| AAGTGGGAGATTGTAGTTGG+AGG | + | chr7_1:56320571-56320590 | Msa1025560:CDS | 45.0% | |
| ! | GTGTAGCTAGCTTCTGCATT+TGG | - | chr7_1:56320628-56320647 | None:intergenic | 45.0% |
| !! | ATAGGTGTCAGTGTCGGTGT+CGG | - | chr7_1:56319513-56319532 | None:intergenic | 50.0% |
| GGAGATTGTAGTTGGAGGCT+GGG | + | chr7_1:56320576-56320595 | Msa1025560:CDS | 50.0% | |
| TGTAGTTGGAGGCTGGGATT+TGG | + | chr7_1:56320582-56320601 | Msa1025560:CDS | 50.0% | |
| AGCCGGCATTATGGTACTCT+CGG | + | chr7_1:56320720-56320739 | Msa1025560:CDS | 50.0% | |
| !! | GACCGAGAGTACCATAATGC+CGG | - | chr7_1:56320725-56320744 | None:intergenic | 50.0% |
| CGTGTCCGTATCTGCGTCAT+AGG | + | chr7_1:56319596-56319615 | Msa1025560:intron | 55.0% | |
| GGGAGATTGTAGTTGGAGGC+TGG | + | chr7_1:56320575-56320594 | Msa1025560:CDS | 55.0% | |
| CGGTCGATAACTCTGCCTCT+AGG | + | chr7_1:56320740-56320759 | Msa1025560:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 56318442 | 56321158 | 56318442 | ID=Msa1025560;Name=Msa1025560 |
| chr7_1 | mRNA | 56318442 | 56321158 | 56318442 | ID=Msa1025560-mRNA-1;Parent=Msa1025560;Name=Msa1025560-mRNA-1;_AED=0.02;_eAED=0.02;_QI=299|1|1|1|1|1|4|306|399 |
| chr7_1 | exon | 56318442 | 56319376 | 56318442 | ID=Msa1025560-mRNA-1:exon:11267;Parent=Msa1025560-mRNA-1 |
| chr7_1 | exon | 56319668 | 56319792 | 56319668 | ID=Msa1025560-mRNA-1:exon:11268;Parent=Msa1025560-mRNA-1 |
| chr7_1 | exon | 56320024 | 56320165 | 56320024 | ID=Msa1025560-mRNA-1:exon:11269;Parent=Msa1025560-mRNA-1 |
| chr7_1 | exon | 56320556 | 56321158 | 56320556 | ID=Msa1025560-mRNA-1:exon:11270;Parent=Msa1025560-mRNA-1 |
| chr7_1 | five_prime_UTR | 56318442 | 56318740 | 56318442 | ID=Msa1025560-mRNA-1:five_prime_utr;Parent=Msa1025560-mRNA-1 |
| chr7_1 | CDS | 56318741 | 56319376 | 56318741 | ID=Msa1025560-mRNA-1:cds;Parent=Msa1025560-mRNA-1 |
| chr7_1 | CDS | 56319668 | 56319792 | 56319668 | ID=Msa1025560-mRNA-1:cds;Parent=Msa1025560-mRNA-1 |
| chr7_1 | CDS | 56320024 | 56320165 | 56320024 | ID=Msa1025560-mRNA-1:cds;Parent=Msa1025560-mRNA-1 |
| chr7_1 | CDS | 56320556 | 56320852 | 56320556 | ID=Msa1025560-mRNA-1:cds;Parent=Msa1025560-mRNA-1 |
| chr7_1 | three_prime_UTR | 56320853 | 56321158 | 56320853 | ID=Msa1025560-mRNA-1:three_prime_utr;Parent=Msa1025560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
