Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665620 | XP_013454678.1 | 97.959 | 147 | 3 | 0 | 1 | 147 | 1 | 147 | 9.67e-100 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665620 | A0A072UG31 | 97.959 | 147 | 3 | 0 | 1 | 147 | 1 | 147 | 4.62e-100 | 293 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008040 | Msa0665620 | 0.803761 | 2.987060e-49 | -8.615850e-47 |
| Msa0018160 | Msa0665620 | 0.805603 | 1.232465e-49 | -8.615850e-47 |
| Msa0025160 | Msa0665620 | 0.802731 | 4.880452e-49 | -8.615850e-47 |
| Msa0025580 | Msa0665620 | 0.820260 | 7.533740e-53 | -8.615850e-47 |
| Msa0032460 | Msa0665620 | 0.805048 | 1.611313e-49 | -8.615850e-47 |
| Msa0034210 | Msa0665620 | 0.801574 | 8.444321e-49 | -8.615850e-47 |
| Msa0035340 | Msa0665620 | 0.802721 | 4.903786e-49 | -8.615850e-47 |
| Msa0050660 | Msa0665620 | 0.827037 | 1.951175e-54 | -8.615850e-47 |
| Msa0050700 | Msa0665620 | 0.827890 | 1.218299e-54 | -8.615850e-47 |
| Msa0050790 | Msa0665620 | 0.833032 | 6.732625e-56 | -8.615850e-47 |
| Msa0054690 | Msa0665620 | 0.824531 | 7.673878e-54 | -8.615850e-47 |
| Msa0071860 | Msa0665620 | 0.804880 | 1.747102e-49 | -8.615850e-47 |
| Msa0071880 | Msa0665620 | 0.816222 | 6.182241e-52 | -8.615850e-47 |
| Msa0117480 | Msa0665620 | 0.817128 | 3.871527e-52 | -8.615850e-47 |
| Msa0644410 | Msa0665620 | 0.805757 | 1.144026e-49 | -8.615850e-47 |
| Msa0661150 | Msa0665620 | 0.828292 | 9.751038e-55 | -8.615850e-47 |
| Msa0665620 | Msa0700460 | 0.839554 | 1.477867e-57 | -8.615850e-47 |
| Msa0665620 | Msa0741220 | 0.808302 | 3.311639e-50 | -8.615850e-47 |
| Msa0665620 | Msa0756490 | 0.840645 | 7.676055e-58 | -8.615850e-47 |
| Msa0665620 | Msa0761670 | 0.801626 | 8.241258e-49 | -8.615850e-47 |
| Msa0665620 | Msa0773670 | 0.827263 | 1.722681e-54 | -8.615850e-47 |
| Msa0665620 | Msa0859290 | 0.803093 | 4.108295e-49 | -8.615850e-47 |
| Msa0665620 | Msa0894790 | 0.806096 | 9.709030e-50 | -8.615850e-47 |
| Msa0665620 | Msa0909760 | 0.804666 | 1.935854e-49 | -8.615850e-47 |
| Msa0665620 | Msa0921590 | 0.810233 | 1.276048e-50 | -8.615850e-47 |
| Msa0665620 | Msa1021590 | 0.806426 | 8.275372e-50 | -8.615850e-47 |
| Msa0665620 | Msa1042160 | 0.856491 | 3.102905e-62 | -8.615850e-47 |
| Msa0665620 | Msa1042190 | 0.856392 | 3.317783e-62 | -8.615850e-47 |
| Msa0665620 | Msa1044680 | 0.837890 | 3.980327e-57 | -8.615850e-47 |
| Msa0665620 | Msa1078820 | 0.803853 | 2.859620e-49 | -8.615850e-47 |
| Msa0665620 | Msa1080000 | 0.814211 | 1.729202e-51 | -8.615850e-47 |
| Msa0665620 | Msa1081390 | 0.809470 | 1.862202e-50 | -8.615850e-47 |
| Msa0665620 | Msa1090140 | 0.809974 | 1.451099e-50 | -8.615850e-47 |
| Msa0665620 | Msa1105640 | 0.830681 | 2.561148e-55 | -8.615850e-47 |
| Msa0665620 | Msa1116220 | 0.821345 | 4.241387e-53 | -8.615850e-47 |
| Msa0665620 | Msa1116660 | 0.807288 | 5.438236e-50 | -8.615850e-47 |
| Msa0665620 | Msa1148960 | 0.823134 | 1.631462e-53 | -8.615850e-47 |
| Msa0665620 | Msa1167470 | 0.849970 | 2.297467e-60 | -8.615850e-47 |
| Msa0665620 | Msa1216110 | 0.819256 | 1.277883e-52 | -8.615850e-47 |
| Msa0665620 | Msa1240770 | 0.834057 | 3.734958e-56 | -8.615850e-47 |
| Msa0665620 | Msa1282260 | 0.839684 | 1.367426e-57 | -8.615850e-47 |
| Msa0665620 | Msa1321340 | 0.828955 | 6.741044e-55 | -8.615850e-47 |
| Msa0665620 | Msa1343180 | 0.821871 | 3.205871e-53 | -8.615850e-47 |
| Msa0665620 | Msa1359690 | 0.817539 | 3.129845e-52 | -8.615850e-47 |
| Msa0665620 | Msa1383310 | 0.808268 | 3.367183e-50 | -8.615850e-47 |
| Msa0665620 | Msa1384460 | 0.821397 | 4.126326e-53 | -8.615850e-47 |
| Msa0665620 | Msa1393780 | 0.811484 | 6.840807e-51 | -8.615850e-47 |
| Msa0665620 | Msa1409410 | 0.816768 | 4.664478e-52 | -8.615850e-47 |
| Msa0665620 | Msa1413690 | 0.822537 | 2.246572e-53 | -8.615850e-47 |
| Msa0665620 | Msa1415540 | 0.808326 | 3.272257e-50 | -8.615850e-47 |
| Msa0665620 | Msa1440630 | 0.832123 | 1.131194e-55 | -8.615850e-47 |
| Msa0665620 | Msa1452140 | 0.804525 | 2.071450e-49 | -8.615850e-47 |
| Msa0128310 | Msa0665620 | 0.805293 | 1.431386e-49 | -8.615850e-47 |
| Msa0149350 | Msa0665620 | 0.814715 | 1.337498e-51 | -8.615850e-47 |
| Msa0190570 | Msa0665620 | 0.804605 | 1.993840e-49 | -8.615850e-47 |
| Msa0230800 | Msa0665620 | 0.806500 | 7.981177e-50 | -8.615850e-47 |
| Msa0231200 | Msa0665620 | 0.812419 | 4.281216e-51 | -8.615850e-47 |
| Msa0380670 | Msa0665620 | 0.804916 | 1.716435e-49 | -8.615850e-47 |
| Msa0381730 | Msa0665620 | 0.800988 | 1.112823e-48 | -8.615850e-47 |
| Msa0415600 | Msa0665620 | 0.801576 | 8.436031e-49 | -8.615850e-47 |
| Msa0422050 | Msa0665620 | 0.823462 | 1.367077e-53 | -8.615850e-47 |
| Msa0430300 | Msa0665620 | 0.827344 | 1.648144e-54 | -8.615850e-47 |
| Msa0431200 | Msa0665620 | 0.832266 | 1.042803e-55 | -8.615850e-47 |
| Msa0435210 | Msa0665620 | 0.831863 | 1.311218e-55 | -8.615850e-47 |
| Msa0472950 | Msa0665620 | 0.821251 | 4.459043e-53 | -8.615850e-47 |
| Msa0476280 | Msa0665620 | 0.822779 | 1.973639e-53 | -8.615850e-47 |
| Msa0479320 | Msa0665620 | 0.807006 | 6.240950e-50 | -8.615850e-47 |
| Msa0270340 | Msa0665620 | 0.805541 | 1.270185e-49 | -8.615850e-47 |
| Msa0292330 | Msa0665620 | 0.813504 | 2.475608e-51 | -8.615850e-47 |
| Msa0298470 | Msa0665620 | 0.821915 | 3.131313e-53 | -8.615850e-47 |
| Msa0323270 | Msa0665620 | 0.810975 | 8.821178e-51 | -8.615850e-47 |
| Msa0517250 | Msa0665620 | 0.832450 | 9.389312e-56 | -8.615850e-47 |
| Msa0520260 | Msa0665620 | 0.838922 | 2.156263e-57 | -8.615850e-47 |
| Msa0528570 | Msa0665620 | 0.811969 | 5.365467e-51 | -8.615850e-47 |
| Msa0530780 | Msa0665620 | 0.843654 | 1.226444e-58 | -8.615850e-47 |
| Msa0548470 | Msa0665620 | 0.803312 | 3.702313e-49 | -8.615850e-47 |
| Msa0549370 | Msa0665620 | 0.836969 | 6.851927e-57 | -8.615850e-47 |
| Msa0563940 | Msa0665620 | 0.810518 | 1.107450e-50 | -8.615850e-47 |
| Msa0580370 | Msa0665620 | 0.801969 | 7.006154e-49 | -8.615850e-47 |
| Msa0587620 | Msa0665620 | 0.862655 | 4.345080e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665620 | MtrunA17_Chr4g0003701 | 97.959 | 147 | 3 | 0 | 1 | 147 | 1 | 147 | 8.89e-104 | 293 |
| Msa0665620 | MtrunA17_Chr3g0138031 | 60.248 | 161 | 49 | 5 | 1 | 146 | 1 | 161 | 2.00e-56 | 174 |
| Msa0665620 | MtrunA17_Chr4g0063351 | 46.853 | 143 | 61 | 3 | 5 | 145 | 6 | 135 | 8.89e-41 | 133 |
| Msa0665620 | MtrunA17_Chr2g0306881 | 45.000 | 140 | 54 | 2 | 5 | 144 | 6 | 122 | 1.89e-36 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665620 | AT3G15680.2 | 62.893 | 159 | 43 | 5 | 1 | 145 | 1 | 157 | 5.58e-59 | 180 |
| Msa0665620 | AT3G15680.1 | 62.893 | 159 | 43 | 5 | 1 | 145 | 1 | 157 | 5.58e-59 | 180 |
| Msa0665620 | AT5G25490.2 | 53.374 | 163 | 58 | 4 | 1 | 145 | 1 | 163 | 9.77e-48 | 152 |
| Msa0665620 | AT5G25490.1 | 53.374 | 163 | 58 | 4 | 1 | 145 | 1 | 163 | 9.77e-48 | 152 |
| Msa0665620 | AT2G26695.1 | 47.518 | 141 | 62 | 3 | 5 | 145 | 6 | 134 | 1.79e-40 | 132 |
| Msa0665620 | AT2G26695.2 | 47.518 | 141 | 62 | 3 | 5 | 145 | 6 | 134 | 1.79e-40 | 132 |
| Msa0665620 | AT2G17975.1 | 29.630 | 162 | 73 | 5 | 3 | 140 | 5 | 149 | 1.37e-12 | 63.5 |
Find 49 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTAATAAACATAGCATTT+TGG | 0.198772 | 4_4:-5248960 | None:intergenic |
| TAAGGCTATGATTTATAAAA+AGG | 0.233743 | 4_4:+5248933 | Msa0665620:three_prime_UTR |
| AATCTAAAGAAGAACCTAAT+TGG | 0.237347 | 4_4:-5248993 | None:intergenic |
| CCTACTCATGTTTACTCCTT+TGG | 0.289512 | 4_4:-5247547 | None:intergenic |
| AGAGAAACCACATCCCAATT+AGG | 0.321163 | 4_4:+5248979 | Msa0665620:three_prime_UTR |
| GTTGATTATGGATCAATGTT+TGG | 0.349697 | 4_4:+5247663 | Msa0665620:CDS |
| CAGATGTTCGTTTAGGTGAT+TGG | 0.350670 | 4_4:+5247724 | Msa0665620:CDS |
| TCAATGTTTGGAGGAATTAG+AGG | 0.355368 | 4_4:+5247675 | Msa0665620:CDS |
| TATGGAGACAGAGTTGATTA+TGG | 0.373749 | 4_4:+5247651 | Msa0665620:CDS |
| AGATGCGGCGATTCAAAGTA+TGG | 0.375499 | 4_4:+5247633 | Msa0665620:CDS |
| TGGATAATCTCATTTCTAGT+AGG | 0.375928 | 4_4:-5248854 | None:intergenic |
| AGTGGTTCAGATGTTCGTTT+AGG | 0.376339 | 4_4:+5247717 | Msa0665620:CDS |
| ACAAGACCTGGATGGAAATC+TGG | 0.404499 | 4_4:+5247888 | Msa0665620:CDS |
| ATTAGAGGAGGATCTTCATT+TGG | 0.405594 | 4_4:+5247690 | Msa0665620:CDS |
| CATTTCTAGTAGGTGTCTCT+TGG | 0.424094 | 4_4:-5248844 | None:intergenic |
| ATCTAAAGAAGAACCTAATT+GGG | 0.437732 | 4_4:-5248992 | None:intergenic |
| TTAGTTAATATGGGATGTTA+AGG | 0.437875 | 4_4:+5248915 | Msa0665620:three_prime_UTR |
| CTGGTGATTGGATATGCAAC+AGG | 0.442185 | 4_4:+5247907 | Msa0665620:CDS |
| GGTGATTGGTATTGTGGTGC+TGG | 0.443291 | 4_4:+5247738 | Msa0665620:CDS |
| GGATCTTCATTTGGTTTAAG+TGG | 0.449514 | 4_4:+5247699 | Msa0665620:CDS |
| ACATGAGTAGGCCAGGAGAT+TGG | 0.464767 | 4_4:+5247559 | Msa0665620:exon |
| GACCTGCAGTTCCAATCTCC+TGG | 0.472667 | 4_4:-5247570 | None:intergenic |
| GGAGTAAACATGAGTAGGCC+AGG | 0.482081 | 4_4:+5247552 | Msa0665620:exon |
| CTGGATGGAAATCTGGTGAT+TGG | 0.494361 | 4_4:+5247895 | Msa0665620:CDS |
| TAGAGAGTTCATTTATTGTA+CGG | 0.497541 | 4_4:+5249083 | Msa0665620:three_prime_UTR |
| CAATCACCAGATTTCCATCC+AGG | 0.500432 | 4_4:-5247894 | None:intergenic |
| GCCTTTGAAAGTTCATGTGT+TGG | 0.505941 | 4_4:-5247596 | None:intergenic |
| CGTTTAGGTGATTGGTATTG+TGG | 0.513265 | 4_4:+5247732 | Msa0665620:CDS |
| GAGATAGAGAAGCTGAAAGA+GGG | 0.517056 | 4_4:-5246674 | None:intergenic |
| AGAGATAGAGAAGCTGAAAG+AGG | 0.517386 | 4_4:-5246675 | None:intergenic |
| GGCCAGGAGATTGGAACTGC+AGG | 0.518043 | 4_4:+5247568 | Msa0665620:CDS |
| TTCATTTATTGTACGGTGCG+TGG | 0.518267 | 4_4:+5249090 | Msa0665620:three_prime_UTR |
| AGAAGAACCTAATTGGGATG+TGG | 0.538087 | 4_4:-5248986 | None:intergenic |
| TATTGTGGTGCTGGTAATTG+TGG | 0.545221 | 4_4:+5247747 | Msa0665620:CDS |
| GCACAACTTTGCTAGCAGAA+TGG | 0.551339 | 4_4:+5248801 | Msa0665620:CDS |
| GCCAACACATGAACTTTCAA+AGG | 0.552763 | 4_4:+5247595 | Msa0665620:CDS |
| GATTATGGATCAATGTTTGG+AGG | 0.560419 | 4_4:+5247666 | Msa0665620:CDS |
| CAAGTTACTTTATTATCTTG+AGG | 0.568695 | 4_4:+5246705 | Msa0665620:five_prime_UTR |
| AAAGATGACCTAGCTGGTGG+AGG | 0.570316 | 4_4:+5247819 | Msa0665620:CDS |
| CGTTTAAGTTGCTTCAAATG+TGG | 0.570358 | 4_4:+5247789 | Msa0665620:CDS |
| TATTATATCCTCCACCAGCT+AGG | 0.570596 | 4_4:-5247827 | None:intergenic |
| CCAAAGGAGTAAACATGAGT+AGG | 0.578304 | 4_4:+5247547 | Msa0665620:exon |
| TTTGGTGGAAATACAAGACC+TGG | 0.581005 | 4_4:+5247876 | Msa0665620:CDS |
| ATGAAACAGTAATTTGCCAA+AGG | 0.594719 | 4_4:+5247531 | Msa0665620:intron |
| GCTTTCAAAGATGACCTAGC+TGG | 0.598108 | 4_4:+5247813 | Msa0665620:CDS |
| TTCAAAGATGACCTAGCTGG+TGG | 0.604459 | 4_4:+5247816 | Msa0665620:CDS |
| GTGGAAATACAAGACCTGGA+TGG | 0.606718 | 4_4:+5247880 | Msa0665620:CDS |
| CGCGAATCGTGTCAAAGATG+CGG | 0.609881 | 4_4:+5247618 | Msa0665620:CDS |
| ATGTTTGGAGGAATTAGAGG+AGG | 0.639273 | 4_4:+5247678 | Msa0665620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAATTGAAGTTA+CGG | - | chr4_4:5246963-5246982 | None:intergenic | 10.0% |
| !!! | TTTTTTTATATTTGTTCATA+TGG | + | chr4_4:5246983-5247002 | Msa0665620:intron | 10.0% |
| !!! | ATTTTCTTTATTAGTTAATA+TGG | + | chr4_4:5248905-5248924 | Msa0665620:three_prime_UTR | 10.0% |
| !!! | TTTTCTTTATTAGTTAATAT+GGG | + | chr4_4:5248906-5248925 | Msa0665620:three_prime_UTR | 10.0% |
| !!! | ATAGAAGATTTTTTAGTAAA+TGG | - | chr4_4:5246840-5246859 | None:intergenic | 15.0% |
| !! | AAAATAGCAATTAATGATTA+TGG | + | chr4_4:5247149-5247168 | Msa0665620:intron | 15.0% |
| !! | TAGTAAGTAATATTATAAAG+TGG | + | chr4_4:5248146-5248165 | Msa0665620:intron | 15.0% |
| !!! | AATGAAATTGCTTTTTATTT+TGG | + | chr4_4:5248567-5248586 | Msa0665620:intron | 15.0% |
| !!! | AACATTGTTATAGTTTTAAA+GGG | - | chr4_4:5249020-5249039 | None:intergenic | 15.0% |
| !!! | TGGAGAATAATAGAAAATTT+TGG | - | chr4_4:5246794-5246813 | None:intergenic | 20.0% |
| !! | ATAATTGACAAGATTAACAT+TGG | - | chr4_4:5246814-5246833 | None:intergenic | 20.0% |
| !!! | TTAATTTTGACTTTACATCT+TGG | - | chr4_4:5247989-5248008 | None:intergenic | 20.0% |
| !! | AATATTATAAAGTGGTCAAT+TGG | + | chr4_4:5248154-5248173 | Msa0665620:intron | 20.0% |
| !!! | ATCTACTATCTTTTGATTAT+TGG | + | chr4_4:5248251-5248270 | Msa0665620:intron | 20.0% |
| !! | TAGTACATATCATTAAAACA+AGG | + | chr4_4:5248468-5248487 | Msa0665620:intron | 20.0% |
| !! | AGTACATATCATTAAAACAA+GGG | + | chr4_4:5248469-5248488 | Msa0665620:intron | 20.0% |
| !!! | TTTTATAAAATCGACTTGTA+AGG | + | chr4_4:5248542-5248561 | Msa0665620:intron | 20.0% |
| !! | ATATCACAATTTATCCATTT+GGG | - | chr4_4:5248600-5248619 | None:intergenic | 20.0% |
| !!! | TAAAACTGACTTGTAAAATA+AGG | + | chr4_4:5248657-5248676 | Msa0665620:intron | 20.0% |
| !! | TAAGGCTATGATTTATAAAA+AGG | + | chr4_4:5248933-5248952 | Msa0665620:three_prime_UTR | 20.0% |
| !!! | CAACATTGTTATAGTTTTAA+AGG | - | chr4_4:5249021-5249040 | None:intergenic | 20.0% |
| !! | CAAGTTACTTTATTATCTTG+AGG | + | chr4_4:5246705-5246724 | Msa0665620:five_prime_UTR | 25.0% |
| !! | AATTTTCCCTACATAATCAT+TGG | - | chr4_4:5247096-5247115 | None:intergenic | 25.0% |
| ! | CAACATTTATGATTCATACA+CGG | + | chr4_4:5247482-5247501 | Msa0665620:intron | 25.0% |
| ! | AGAAAAGAGACTTGTAATAA+GGG | + | chr4_4:5248094-5248113 | Msa0665620:intron | 25.0% |
| !!! | GAAATTGCTTTTTATTTTGG+TGG | + | chr4_4:5248570-5248589 | Msa0665620:intron | 25.0% |
| ! | GATATCACAATTTATCCATT+TGG | - | chr4_4:5248601-5248620 | None:intergenic | 25.0% |
| !! | TCATTCATCATTTTCAATGT+AGG | + | chr4_4:5248707-5248726 | Msa0665620:intron | 25.0% |
| !!! | TTGTTTGTTTTGAACAGATT+AGG | + | chr4_4:5248769-5248788 | Msa0665620:intron | 25.0% |
| ! | TTAGTTAATATGGGATGTTA+AGG | + | chr4_4:5248915-5248934 | Msa0665620:three_prime_UTR | 25.0% |
| !! | CTCTAATAAACATAGCATTT+TGG | - | chr4_4:5248963-5248982 | None:intergenic | 25.0% |
| ! | ATCTAAAGAAGAACCTAATT+GGG | - | chr4_4:5248995-5249014 | None:intergenic | 25.0% |
| ! | AATCTAAAGAAGAACCTAAT+TGG | - | chr4_4:5248996-5249015 | None:intergenic | 25.0% |
| ! | TAGAGAGTTCATTTATTGTA+CGG | + | chr4_4:5249083-5249102 | Msa0665620:three_prime_UTR | 25.0% |
| TGTGAGTGAAAGAAAAATGA+GGG | - | chr4_4:5246762-5246781 | None:intergenic | 30.0% | |
| ATGTGAGTGAAAGAAAAATG+AGG | - | chr4_4:5246763-5246782 | None:intergenic | 30.0% | |
| ATGATTGAAGATTATGTGAC+AGG | - | chr4_4:5246873-5246892 | None:intergenic | 30.0% | |
| AAACTACAAAGCAAGTTATG+AGG | - | chr4_4:5246926-5246945 | None:intergenic | 30.0% | |
| AAGAGTTTGTGAATGATACT+AGG | - | chr4_4:5247052-5247071 | None:intergenic | 30.0% | |
| TAATGAGCCAATGATTATGT+AGG | + | chr4_4:5247086-5247105 | Msa0665620:intron | 30.0% | |
| AATGAGCCAATGATTATGTA+GGG | + | chr4_4:5247087-5247106 | Msa0665620:intron | 30.0% | |
| TGTAGGGAAAATTTCAACTT+TGG | + | chr4_4:5247103-5247122 | Msa0665620:intron | 30.0% | |
| TACGAAAAAGAGGTAAAAAG+TGG | + | chr4_4:5247198-5247217 | Msa0665620:intron | 30.0% | |
| AAACATTGATGTGACATACT+TGG | + | chr4_4:5247257-5247276 | Msa0665620:intron | 30.0% | |
| AGAGTTCTATAATCACTCAT+CGG | - | chr4_4:5247368-5247387 | None:intergenic | 30.0% | |
| !! | TAATAGATATAGTGCTGACT+TGG | - | chr4_4:5247435-5247454 | None:intergenic | 30.0% |
| ! | ATGAAACAGTAATTTGCCAA+AGG | + | chr4_4:5247531-5247550 | Msa0665620:intron | 30.0% |
| GTTGATTATGGATCAATGTT+TGG | + | chr4_4:5247663-5247682 | Msa0665620:CDS | 30.0% | |
| ! | ATTTTGCTTTCAAGAGGTTT+TGG | + | chr4_4:5247858-5247877 | Msa0665620:CDS | 30.0% |
| GAGAAAAGAGACTTGTAATA+AGG | + | chr4_4:5248093-5248112 | Msa0665620:intron | 30.0% | |
| !! | TGATTATTGGTTCCAAATGA+AGG | + | chr4_4:5248264-5248283 | Msa0665620:intron | 30.0% |
| !! | GATTATTGGTTCCAAATGAA+GGG | + | chr4_4:5248265-5248284 | Msa0665620:intron | 30.0% |
| AGAAAGAAAGCAAAAAGCAA+AGG | - | chr4_4:5248295-5248314 | None:intergenic | 30.0% | |
| ACATCAAGTTCAAACTCAAA+GGG | - | chr4_4:5248318-5248337 | None:intergenic | 30.0% | |
| AACATCAAGTTCAAACTCAA+AGG | - | chr4_4:5248319-5248338 | None:intergenic | 30.0% | |
| CTAAAAGAAGTCAAAGAAAG+AGG | - | chr4_4:5248418-5248437 | None:intergenic | 30.0% | |
| !! | CTCTTTCTTTGACTTCTTTT+AGG | + | chr4_4:5248416-5248435 | Msa0665620:intron | 30.0% |
| GGAGTTACATACTTTGAATT+TGG | + | chr4_4:5248437-5248456 | Msa0665620:intron | 30.0% | |
| !! | TGTCATGTTTTTGTCACAAT+GGG | - | chr4_4:5248745-5248764 | None:intergenic | 30.0% |
| !! | ATGTCATGTTTTTGTCACAA+TGG | - | chr4_4:5248746-5248765 | None:intergenic | 30.0% |
| !! | TGGATAATCTCATTTCTAGT+AGG | - | chr4_4:5248857-5248876 | None:intergenic | 30.0% |
| !!! | ATCTCTAGTCTTTTTTTGCT+TGG | - | chr4_4:5248877-5248896 | None:intergenic | 30.0% |
| GGCTATGATTTATAAAAAGG+TGG | + | chr4_4:5248936-5248955 | Msa0665620:three_prime_UTR | 30.0% | |
| AATGAGGGGGAATATTAGAA+AGG | - | chr4_4:5246747-5246766 | None:intergenic | 35.0% | |
| TGAGTGAAAGAAAAATGAGG+GGG | - | chr4_4:5246760-5246779 | None:intergenic | 35.0% | |
| GTGAGTGAAAGAAAAATGAG+GGG | - | chr4_4:5246761-5246780 | None:intergenic | 35.0% | |
| AGTTACGTTGTACGAAAAAG+AGG | + | chr4_4:5247188-5247207 | Msa0665620:intron | 35.0% | |
| ! | TGTGTCCAAGCAAGTAATTT+TGG | - | chr4_4:5247233-5247252 | None:intergenic | 35.0% |
| AGTTAAAGAGTGGAGTGATA+AGG | - | chr4_4:5247397-5247416 | None:intergenic | 35.0% | |
| ! | TATGGAGACAGAGTTGATTA+TGG | + | chr4_4:5247651-5247670 | Msa0665620:CDS | 35.0% |
| GATTATGGATCAATGTTTGG+AGG | + | chr4_4:5247666-5247685 | Msa0665620:CDS | 35.0% | |
| TCAATGTTTGGAGGAATTAG+AGG | + | chr4_4:5247675-5247694 | Msa0665620:CDS | 35.0% | |
| ATTAGAGGAGGATCTTCATT+TGG | + | chr4_4:5247690-5247709 | Msa0665620:CDS | 35.0% | |
| ! | GGATCTTCATTTGGTTTAAG+TGG | + | chr4_4:5247699-5247718 | Msa0665620:CDS | 35.0% |
| !! | CGTTTAAGTTGCTTCAAATG+TGG | + | chr4_4:5247789-5247808 | Msa0665620:CDS | 35.0% |
| ! | AGTGACATTTTGCTTTCAAG+AGG | + | chr4_4:5247852-5247871 | Msa0665620:CDS | 35.0% |
| ! | GGTCACATTTTATCATCTTG+TGG | + | chr4_4:5248115-5248134 | Msa0665620:intron | 35.0% |
| TGACATATGACACAAACCAA+AGG | + | chr4_4:5248348-5248367 | Msa0665620:intron | 35.0% | |
| GAGATAGAGAAGCTGAAAGA+GGG | - | chr4_4:5246677-5246696 | None:intergenic | 40.0% | |
| AGAGATAGAGAAGCTGAAAG+AGG | - | chr4_4:5246678-5246697 | None:intergenic | 40.0% | |
| TGCGACCAAAATTACTTGCT+TGG | + | chr4_4:5247225-5247244 | Msa0665620:intron | 40.0% | |
| CCTACTCATGTTTACTCCTT+TGG | - | chr4_4:5247550-5247569 | None:intergenic | 40.0% | |
| CCAAAGGAGTAAACATGAGT+AGG | + | chr4_4:5247547-5247566 | Msa0665620:exon | 40.0% | |
| GCCAACACATGAACTTTCAA+AGG | + | chr4_4:5247595-5247614 | Msa0665620:CDS | 40.0% | |
| ! | GCCTTTGAAAGTTCATGTGT+TGG | - | chr4_4:5247599-5247618 | None:intergenic | 40.0% |
| ATGTTTGGAGGAATTAGAGG+AGG | + | chr4_4:5247678-5247697 | Msa0665620:CDS | 40.0% | |
| AGTGGTTCAGATGTTCGTTT+AGG | + | chr4_4:5247717-5247736 | Msa0665620:CDS | 40.0% | |
| CAGATGTTCGTTTAGGTGAT+TGG | + | chr4_4:5247724-5247743 | Msa0665620:CDS | 40.0% | |
| CGTTTAGGTGATTGGTATTG+TGG | + | chr4_4:5247732-5247751 | Msa0665620:CDS | 40.0% | |
| !! | TATTGTGGTGCTGGTAATTG+TGG | + | chr4_4:5247747-5247766 | Msa0665620:CDS | 40.0% |
| TATTATATCCTCCACCAGCT+AGG | - | chr4_4:5247830-5247849 | None:intergenic | 40.0% | |
| !! | TTGCTTTCAAGAGGTTTTGG+TGG | + | chr4_4:5247861-5247880 | Msa0665620:CDS | 40.0% |
| TTTGGTGGAAATACAAGACC+TGG | + | chr4_4:5247876-5247895 | Msa0665620:CDS | 40.0% | |
| ACACAAACCAAAGGCAATGA+TGG | + | chr4_4:5248357-5248376 | Msa0665620:intron | 40.0% | |
| CACAAACCAAAGGCAATGAT+GGG | + | chr4_4:5248358-5248377 | Msa0665620:intron | 40.0% | |
| ACAAACCAAAGGCAATGATG+GGG | + | chr4_4:5248359-5248378 | Msa0665620:intron | 40.0% | |
| !! | ATTTTGGTGGATGACCCAAA+TGG | + | chr4_4:5248583-5248602 | Msa0665620:intron | 40.0% |
| !! | CATTTCTAGTAGGTGTCTCT+TGG | - | chr4_4:5248847-5248866 | None:intergenic | 40.0% |
| AGAGAAACCACATCCCAATT+AGG | + | chr4_4:5248979-5248998 | Msa0665620:three_prime_UTR | 40.0% | |
| AGAAGAACCTAATTGGGATG+TGG | - | chr4_4:5248989-5249008 | None:intergenic | 40.0% | |
| TTCATTTATTGTACGGTGCG+TGG | + | chr4_4:5249090-5249109 | Msa0665620:three_prime_UTR | 40.0% | |
| GAGGTGGAAGAGTTAAAGAG+TGG | - | chr4_4:5247407-5247426 | None:intergenic | 45.0% | |
| !! | TAGTGCTGACTTGGTGATTG+AGG | - | chr4_4:5247426-5247445 | None:intergenic | 45.0% |
| AGATGCGGCGATTCAAAGTA+TGG | + | chr4_4:5247633-5247652 | Msa0665620:CDS | 45.0% | |
| GCTTTCAAAGATGACCTAGC+TGG | + | chr4_4:5247813-5247832 | Msa0665620:CDS | 45.0% | |
| TTCAAAGATGACCTAGCTGG+TGG | + | chr4_4:5247816-5247835 | Msa0665620:CDS | 45.0% | |
| GTGGAAATACAAGACCTGGA+TGG | + | chr4_4:5247880-5247899 | Msa0665620:CDS | 45.0% | |
| ACAAGACCTGGATGGAAATC+TGG | + | chr4_4:5247888-5247907 | Msa0665620:CDS | 45.0% | |
| CAATCACCAGATTTCCATCC+AGG | - | chr4_4:5247897-5247916 | None:intergenic | 45.0% | |
| CTGGATGGAAATCTGGTGAT+TGG | + | chr4_4:5247895-5247914 | Msa0665620:CDS | 45.0% | |
| CTGGTGATTGGATATGCAAC+AGG | + | chr4_4:5247907-5247926 | Msa0665620:CDS | 45.0% | |
| GCAAAGGTTGTCCCTTCATT+TGG | - | chr4_4:5248279-5248298 | None:intergenic | 45.0% | |
| TAGAACCCCATCATTGCCTT+TGG | - | chr4_4:5248367-5248386 | None:intergenic | 45.0% | |
| ! | AAAGGCAATGATGGGGTTCT+AGG | + | chr4_4:5248366-5248385 | Msa0665620:intron | 45.0% |
| GCACAACTTTGCTAGCAGAA+TGG | + | chr4_4:5248801-5248820 | Msa0665620:CDS | 45.0% | |
| !! | TGCTGACTTGGTGATTGAGG+TGG | - | chr4_4:5247423-5247442 | None:intergenic | 50.0% |
| GGAGTAAACATGAGTAGGCC+AGG | + | chr4_4:5247552-5247571 | Msa0665620:exon | 50.0% | |
| ACATGAGTAGGCCAGGAGAT+TGG | + | chr4_4:5247559-5247578 | Msa0665620:exon | 50.0% | |
| CGCGAATCGTGTCAAAGATG+CGG | + | chr4_4:5247618-5247637 | Msa0665620:CDS | 50.0% | |
| GGTGATTGGTATTGTGGTGC+TGG | + | chr4_4:5247738-5247757 | Msa0665620:CDS | 50.0% | |
| AAAGATGACCTAGCTGGTGG+AGG | + | chr4_4:5247819-5247838 | Msa0665620:CDS | 50.0% | |
| GACCTGCAGTTCCAATCTCC+TGG | - | chr4_4:5247573-5247592 | None:intergenic | 55.0% | |
| GGCCAGGAGATTGGAACTGC+AGG | + | chr4_4:5247568-5247587 | Msa0665620:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 5246664 | 5249150 | 5246664 | ID=Msa0665620;Name=Msa0665620 |
| chr4_4 | mRNA | 5246664 | 5249150 | 5246664 | ID=Msa0665620-mRNA-1;Parent=Msa0665620;Name=Msa0665620-mRNA-1;_AED=0.04;_eAED=0.04;_QI=84|1|1|1|0.5|0.33|3|289|147 |
| chr4_4 | exon | 5246664 | 5246726 | 5246664 | ID=Msa0665620-mRNA-1:exon:1703;Parent=Msa0665620-mRNA-1 |
| chr4_4 | exon | 5247540 | 5247928 | 5247540 | ID=Msa0665620-mRNA-1:exon:1704;Parent=Msa0665620-mRNA-1 |
| chr4_4 | exon | 5248786 | 5249150 | 5248786 | ID=Msa0665620-mRNA-1:exon:1705;Parent=Msa0665620-mRNA-1 |
| chr4_4 | five_prime_UTR | 5246664 | 5246726 | 5246664 | ID=Msa0665620-mRNA-1:five_prime_utr;Parent=Msa0665620-mRNA-1 |
| chr4_4 | five_prime_UTR | 5247540 | 5247560 | 5247540 | ID=Msa0665620-mRNA-1:five_prime_utr;Parent=Msa0665620-mRNA-1 |
| chr4_4 | CDS | 5247561 | 5247928 | 5247561 | ID=Msa0665620-mRNA-1:cds;Parent=Msa0665620-mRNA-1 |
| chr4_4 | CDS | 5248786 | 5248861 | 5248786 | ID=Msa0665620-mRNA-1:cds;Parent=Msa0665620-mRNA-1 |
| chr4_4 | three_prime_UTR | 5248862 | 5249150 | 5248862 | ID=Msa0665620-mRNA-1:three_prime_utr;Parent=Msa0665620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
