AlfalfaGEDB | Msa0250670

M. sativa cultivar zhongmu-4 / Msa0250670

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250670	XP_003595781.1	95.251	716	30	2	1	712	4	719	0.0	1230

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250670	G7IJ06	95.251	716	30	2	1	712	4	719	0.0	1230

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TFs/TRs:

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Gene ID	Type	Classification
Msa0250670	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0250670	-0.802937	4.426857e-49	-8.615850e-47
Msa0005270	Msa0250670	0.800432	1.445485e-48	-8.615850e-47
Msa0008410	Msa0250670	0.812345	4.443211e-51	-8.615850e-47
Msa0027390	Msa0250670	0.819626	1.052393e-52	-8.615850e-47
Msa0029850	Msa0250670	0.809353	1.972850e-50	-8.615850e-47
Msa0037120	Msa0250670	0.801614	8.285755e-49	-8.615850e-47
Msa0038020	Msa0250670	0.808215	3.455522e-50	-8.615850e-47
Msa0048000	Msa0250670	0.841703	4.046703e-58	-8.615850e-47
Msa0050730	Msa0250670	0.835537	1.583655e-56	-8.615850e-47
Msa0050760	Msa0250670	0.840010	1.124604e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250670	MtrunA17_Chr2g0308521	95.251	716	30	2	1	712	4	719	0.0	1230
Msa0250670	MtrunA17_Chr4g0047931	25.437	515	268	19	18	461	9	478	3.01e-24	107
Msa0250670	MtrunA17_Chr2g0281431	38.194	144	65	5	15	158	1	120	2.73e-17	86.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250670	AT2G44430.1	34.683	741	325	29	2	712	35	646	1.07e-78	265
Msa0250670	AT3G60110.1	33.380	716	350	26	8	712	42	641	1.68e-72	248
Msa0250670	AT2G42150.1	30.964	633	320	24	16	625	14	552	3.13e-54	197
Msa0250670	AT3G57980.1	28.370	497	279	18	254	712	193	650	2.60e-27	118
Msa0250670	AT3G57980.1	46.715	137	68	3	1	137	1	132	4.28e-27	117
Msa0250670	AT3G57980.2	46.715	137	68	3	1	137	1	132	4.31e-27	117
Msa0250670	AT3G57980.2	28.313	498	280	18	254	712	193	652	6.96e-27	117
Msa0250670	AT1G61215.1	35.115	131	60	4	18	148	14	119	9.77e-13	71.6

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Find 261 sgRNAs with CRISPR-Local

Find 1150 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGGCGAGCAAGAAA+GGG	0.540442	2_2:-39680876	Msa0250670:five_prime_UTR
AAAATAGTGAATAATGGAAA+AGG	0.414108	2_2:-39674457	Msa0250670:CDS
AAAATCCGGTTTGAATGAAC+CGG	0.437047	2_2:-39679945	Msa0250670:CDS
AAAATTGAAGAACAAAGCAG+AGG	0.652415	2_2:-39674644	Msa0250670:CDS
AAACATTGTTACATTTACCT+AGG	0.540523	2_2:+39674092	None:intergenic
AAACCAAGACCTACAGGGTT+GGG	0.386641	2_2:-39680751	Msa0250670:CDS
AAACCCAAACCAAGACCTAC+AGG	0.459237	2_2:-39680757	Msa0250670:CDS
AAAGACGGAGAATGAGGACG+TGG	0.656597	2_2:-39679684	Msa0250670:CDS
AAATACTGTGAAACGGCACG+TGG	0.652877	2_2:-39675253	Msa0250670:CDS
AAATAGTGAATAATGGAAAA+GGG	0.420047	2_2:-39674456	Msa0250670:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCTTATAAAAAAAGACGGA+GGG	+	chr2_2:39673975-39673994	None:intergenic	30.0%
TTGCTTATAAAAAAAGACGG+AGG	+	chr2_2:39673976-39673995	None:intergenic	30.0%
TTTCCATGAAACTTATTCCA+AGG	+	chr2_2:39674067-39674086	None:intergenic	30.0%
GATTGGATTTAGATTTGAAG+AGG	-	chr2_2:39674561-39674580	Msa0250670:CDS	30.0%
AGAGATAGAGATATACAGAA+TGG	+	chr2_2:39675044-39675063	None:intergenic	30.0%
GTTGATGTAAAATTAGGTTC+AGG	-	chr2_2:39675468-39675487	Msa0250670:intron	30.0%
TGGATAAAATGGGTATTTCA+CGG	-	chr2_2:39675933-39675952	Msa0250670:intron	30.0%
ATCAAATATACAACACTCGT+TGG	+	chr2_2:39676527-39676546	None:intergenic	30.0%
ACATAGGACTACAAACAATA+CGG	+	chr2_2:39676584-39676603	None:intergenic	30.0%
ACATGACCCTAATGTAAATA+TGG	+	chr2_2:39677475-39677494	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	39673943	39681545	39673943	ID=Msa0250670;Name=Msa0250670
chr2_2	mRNA	39673943	39681545	39673943	ID=Msa0250670-mRNA-1;Parent=Msa0250670;Name=Msa0250670-mRNA-1;_AED=0.00;_eAED=0.00;_QI=419\|1\|1\|1\|0.66\|0.5\|4\|300\|712
chr2_2	exon	39673943	39675292	39673943	ID=Msa0250670-mRNA-1:exon:12251;Parent=Msa0250670-mRNA-1
chr2_2	exon	39679589	39680312	39679589	ID=Msa0250670-mRNA-1:exon:12250;Parent=Msa0250670-mRNA-1
chr2_2	exon	39680441	39681201	39680441	ID=Msa0250670-mRNA-1:exon:12249;Parent=Msa0250670-mRNA-1
chr2_2	exon	39681523	39681545	39681523	ID=Msa0250670-mRNA-1:exon:12248;Parent=Msa0250670-mRNA-1
chr2_2	five_prime_UTR	39681523	39681545	39681523	ID=Msa0250670-mRNA-1:five_prime_utr;Parent=Msa0250670-mRNA-1
chr2_2	five_prime_UTR	39680806	39681201	39680806	ID=Msa0250670-mRNA-1:five_prime_utr;Parent=Msa0250670-mRNA-1
chr2_2	CDS	39680441	39680805	39680441	ID=Msa0250670-mRNA-1:cds;Parent=Msa0250670-mRNA-1
chr2_2	CDS	39679589	39680312	39679589	ID=Msa0250670-mRNA-1:cds;Parent=Msa0250670-mRNA-1
chr2_2	CDS	39674243	39675292	39674243	ID=Msa0250670-mRNA-1:cds;Parent=Msa0250670-mRNA-1
chr2_2	three_prime_UTR	39673943	39674242	39673943	ID=Msa0250670-mRNA-1:three_prime_utr;Parent=Msa0250670-mRNA-1

Gene Sequence

>Msa0250670

ATGGAAAACCACCAAAACCAAAACAAAAACCCAAACCAAGACCTACAGGGTTGGGGCACGTGGGAGGAGCTTTTACTAGCCTCCGCCGTCGACCGCCATGGCTTCAAAGACTGGGACACCATCGCCATGGAGGTTCAGTCACGTACCAACCGCACTTCCCTCCTCGCCACCGCACACCACTGCGAACAAAAATTTCACGATCTAAACCGCCGATATCAAGACGACGTCCCGCCGCCACAGCAGAACGGTGACGTCTCCGCCGCCACCTCTGAAGATTCCGATCACGTTCCATGGCTTGATAAACTCCGTAAACAACGTGTTGCTGAGCTCCGTCGTGATGTCCAACGCAGCGACGTCTCCATTCTGTCGTTGCAGTTGCAGGTGAAAAAATTAGAAGACGAGAAAGCCAAAGAAAATGAGGAAAAAGAAGAAACAGAACCAGATCTGGCGGTTCCCGGCGACTTACGGTTGCCGGAGAATGAAAAAACCGGTGGAGATATGGATGAATCGGTACCGGATATTCGGCGGCTCGATGAAAGCACAACTAATACTGATAAGTTGTTACCAGCAACGGGTGAAGAATCGGACCGGGATAATCAATCGGTTAATGAGTCAAACTCAACCGGTTCGAGGTTTGATGCATTGAAAACCGGTGAGGTTGATGTAAAATTAGGTTCAGGTCCAGGTCCTAGTTCCGGTTCGGTTCAAGTAAAATCCGGTTTGAATGAACCGGATCAAACCGGGAGGAAAAGAAAATCGGTTGAGGAAGAATCGAATAACGGAAGCTATGATAACAACGAGGCTAAAGCTGTTACGTGTGACTCGGTGCCTCCGAGTGAGGAAAGGAAGGTGGAGGATGAGTCGGTGACTCGGTCGGAGGAGGGAGGGACGAGGGAGAGCAGCGAGGTGCAGAGTTCGTCGAGTTTGTCGAAGACGAGGAGGACGCAGCGGCGGAGGAAGGAGGAAGACACAAAGACGGAGAATGAGGACGTGGCGGTGGTGAAATCAGAACCGTTGGTTTGCGTGTTGGAGATGATCAAAAGACATGAAAAATTTTCATTGTTTGAGCGCCGTCTTGAAAAAAACCAGGATTTGGACAGATACAAAAATACTGTGAAACGGCACGTGGACTTGGAAACCATACAACTGAGGGTCCAAGAGGGTCACTATTCCTCAGGGACAAACACATTCTTCCTTGACCTCGTTACTCTCTTCAGCAATGCCACCGTGTTCTTCTCTCGTCGTTCACCTGAATTGCGGGCTGCGCAGCAGCTGCGCCGCCTCATCCTTGATGAGATGAAAACTTTCGGCCAAGCACAATCCAACACTATCACACAGAAGAGCGATTCACTCCCTCCAAACACACCATTATCCAGACCAAATTCTCTCTCCAAGCATAAACCTCCTATATTAGTTTGCCGCAAACGTAGTTCAATCCCAGTCAAACCTTCTACCACCACCTTTAGCCAAAAGGGTGATCACAAACCCATCATCAATGACAAGAAGGAAAGGCCTTTCTCTGATGTGAAACCAACCTTAAAACCAAGTTCGGAGACAGATGAAGAGGAGCCTCCTAAGGCCAAGGAAAAGCCTGTCACTGGAGCTAGAAGTAGAAGAAGTAACAAGAACCTCAGCAGCAACGCCAGCAATAAGAAACCACCCTCTAACTCCACTCCTAAAACAGGGTCCTCGGCAAACAAACCGGCCGAGACCCCAAAATTGAAGAACAAAGCAGAGGGGGTGTCAGACAAGAAGAAGAACAACGGTGCCGCTGGTTTCTTGAATAGAATAAAGAAAAATGAATCGGTGGAGGTGCTGAGGAGTGGTAGTGGTGGTGGAGGAGGAAGTAGTGGAAGCAGTAAGGGTGGTGGTGGAGGTGGTACTAATACAAAAGAGCCGAAGAAAATAGTGAATAATGGAAAAGGGGAGAAAGGGAAAGAAAGAGCTTCAAGGTATAACGATGGAGGAGGGTCAGGTTCAGGAGATAAGAGGAACAAGAATATTGAGAGCAACTCGAAGAGGAATGTTGGAAGACCTCCAAAAAAAGCGGCAGAGACCGTAGCTAGTACAAAGCGTGGAAGGGAAAGTAGTGCAAGTGGTGGCAAAGATAAGCGACCCAAAAAACGTTCTAAGAAATGA

Protein sequence

>Msa0250670

MENHQNQNKNPNQDLQGWGTWEELLLASAVDRHGFKDWDTIAMEVQSRTNRTSLLATAHHCEQKFHDLNRRYQDDVPPPQQNGDVSAATSEDSDHVPWLDKLRKQRVAELRRDVQRSDVSILSLQLQVKKLEDEKAKENEEKEETEPDLAVPGDLRLPENEKTGGDMDESVPDIRRLDESTTNTDKLLPATGEESDRDNQSVNESNSTGSRFDALKTGEVDVKLGSGPGPSSGSVQVKSGLNEPDQTGRKRKSVEEESNNGSYDNNEAKAVTCDSVPPSEERKVEDESVTRSEEGGTRESSEVQSSSSLSKTRRTQRRRKEEDTKTENEDVAVVKSEPLVCVLEMIKRHEKFSLFERRLEKNQDLDRYKNTVKRHVDLETIQLRVQEGHYSSGTNTFFLDLVTLFSNATVFFSRRSPELRAAQQLRRLILDEMKTFGQAQSNTITQKSDSLPPNTPLSRPNSLSKHKPPILVCRKRSSIPVKPSTTTFSQKGDHKPIINDKKERPFSDVKPTLKPSSETDEEEPPKAKEKPVTGARSRRSNKNLSSNASNKKPPSNSTPKTGSSANKPAETPKLKNKAEGVSDKKKNNGAAGFLNRIKKNESVEVLRSGSGGGGGSSGSSKGGGGGGTNTKEPKKIVNNGKGEKGKERASRYNDGGGSGSGDKRNKNIESNSKRNVGRPPKKAAETVASTKRGRESSASGGKDKRPKKRSKK*