Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601390 | XP_003606113.1 | 93.899 | 377 | 2 | 1 | 1 | 356 | 44 | 420 | 0.0 | 707 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601390 | sp|Q9ZW88|FBL34_ARATH | 67.374 | 377 | 102 | 1 | 1 | 356 | 43 | 419 | 7.05e-176 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601390 | G7JIE1 | 93.899 | 377 | 2 | 1 | 1 | 356 | 44 | 420 | 0.0 | 707 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007470 | Msa0601390 | 0.803894 | 2.803378e-49 | -8.615850e-47 |
| Msa0118540 | Msa0601390 | 0.838294 | 3.131801e-57 | -8.615850e-47 |
| Msa0189030 | Msa0601390 | 0.827493 | 1.517351e-54 | -8.615850e-47 |
| Msa0388730 | Msa0601390 | 0.803029 | 4.236615e-49 | -8.615850e-47 |
| Msa0403770 | Msa0601390 | 0.802031 | 6.804579e-49 | -8.615850e-47 |
| Msa0296980 | Msa0601390 | -0.811305 | 7.483750e-51 | -8.615850e-47 |
| Msa0309270 | Msa0601390 | 0.824981 | 6.011307e-54 | -8.615850e-47 |
| Msa0347750 | Msa0601390 | 0.800989 | 1.112306e-48 | -8.615850e-47 |
| Msa0358860 | Msa0601390 | 0.804381 | 2.220209e-49 | -8.615850e-47 |
| Msa0542560 | Msa0601390 | 0.805493 | 1.299789e-49 | -8.615850e-47 |
| Msa0601390 | Msa0604290 | 0.816341 | 5.813225e-52 | -8.615850e-47 |
| Msa0601390 | Msa0679360 | 0.802093 | 6.607288e-49 | -8.615850e-47 |
| Msa0601390 | Msa0750850 | 0.800809 | 1.210624e-48 | -8.615850e-47 |
| Msa0601390 | Msa0763920 | 0.813222 | 2.854659e-51 | -8.615850e-47 |
| Msa0601390 | Msa0788540 | 0.812821 | 3.495845e-51 | -8.615850e-47 |
| Msa0601390 | Msa0817460 | 0.803689 | 3.092620e-49 | -8.615850e-47 |
| Msa0601390 | Msa0831130 | 0.800617 | 1.325022e-48 | -8.615850e-47 |
| Msa0601390 | Msa0861570 | 0.803757 | 2.993540e-49 | -8.615850e-47 |
| Msa0601390 | Msa0880810 | 0.819650 | 1.039069e-52 | -8.615850e-47 |
| Msa0601390 | Msa0890550 | 0.811322 | 7.418612e-51 | -8.615850e-47 |
| Msa0601390 | Msa0894710 | 0.819021 | 1.445072e-52 | -8.615850e-47 |
| Msa0601390 | Msa0921420 | 0.815721 | 7.997781e-52 | -8.615850e-47 |
| Msa0601390 | Msa0960390 | 0.810109 | 1.357431e-50 | -8.615850e-47 |
| Msa0601390 | Msa0992580 | 0.803413 | 3.527576e-49 | -8.615850e-47 |
| Msa0601390 | Msa0994370 | 0.830285 | 3.201192e-55 | -8.615850e-47 |
| Msa0601390 | Msa1018040 | 0.809162 | 2.168005e-50 | -8.615850e-47 |
| Msa0601390 | Msa1063420 | 0.827791 | 1.286790e-54 | -8.615850e-47 |
| Msa0601390 | Msa1071320 | 0.803899 | 2.796921e-49 | -8.615850e-47 |
| Msa0601390 | Msa1081790 | -0.822038 | 2.932671e-53 | -8.615850e-47 |
| Msa0601390 | Msa1107200 | 0.803226 | 3.857668e-49 | -8.615850e-47 |
| Msa0601390 | Msa1166090 | -0.824722 | 6.919305e-54 | -8.615850e-47 |
| Msa0601390 | Msa1176710 | 0.801011 | 1.101229e-48 | -8.615850e-47 |
| Msa0601390 | Msa1177780 | 0.802524 | 5.385600e-49 | -8.615850e-47 |
| Msa0601390 | Msa1180500 | 0.820318 | 7.305861e-53 | -8.615850e-47 |
| Msa0601390 | Msa1206270 | 0.801164 | 1.024328e-48 | -8.615850e-47 |
| Msa0601390 | Msa1206290 | 0.813074 | 3.076840e-51 | -8.615850e-47 |
| Msa0601390 | Msa1218580 | 0.816097 | 6.590333e-52 | -8.615850e-47 |
| Msa0601390 | Msa1231840 | 0.820582 | 6.355376e-53 | -8.615850e-47 |
| Msa0601390 | Msa1270660 | 0.832844 | 7.496849e-56 | -8.615850e-47 |
| Msa0601390 | Msa1270730 | 0.808705 | 2.716707e-50 | -8.615850e-47 |
| Msa0601390 | Msa1295330 | 0.804813 | 1.803689e-49 | -8.615850e-47 |
| Msa0601390 | Msa1312520 | 0.822183 | 2.714828e-53 | -8.615850e-47 |
| Msa0601390 | Msa1316360 | 0.806553 | 7.777117e-50 | -8.615850e-47 |
| Msa0601390 | Msa1335230 | 0.809510 | 1.826060e-50 | -8.615850e-47 |
| Msa0601390 | Msa1355890 | 0.819978 | 8.741176e-53 | -8.615850e-47 |
| Msa0601390 | Msa1357430 | 0.804343 | 2.261108e-49 | -8.615850e-47 |
| Msa0601390 | Msa1388830 | 0.811499 | 6.791762e-51 | -8.615850e-47 |
| Msa0601390 | Msa1396400 | -0.820915 | 5.330340e-53 | -8.615850e-47 |
| Msa0601390 | Msa1420270 | 0.804299 | 2.309538e-49 | -8.615850e-47 |
| Msa0601390 | Msa1422810 | 0.813352 | 2.673852e-51 | -8.615850e-47 |
| Msa0601390 | Msa1430130 | 0.808095 | 3.665301e-50 | -8.615850e-47 |
| Msa0601390 | Msa1436600 | 0.812155 | 4.888561e-51 | -8.615850e-47 |
| Msa0601390 | Msa1458090 | 0.802491 | 5.470558e-49 | -8.615850e-47 |
| Msa0601390 | Msa1460750 | 0.808424 | 3.118396e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601390 | MtrunA17_Chr4g0026391 | 93.899 | 377 | 2 | 1 | 1 | 356 | 44 | 420 | 0.0 | 707 |
| Msa0601390 | MtrunA17_Chr1g0178681 | 61.273 | 377 | 125 | 1 | 1 | 356 | 43 | 419 | 1.36e-154 | 441 |
| Msa0601390 | MtrunA17_Chr7g0266221 | 58.886 | 377 | 134 | 1 | 1 | 356 | 43 | 419 | 3.42e-151 | 432 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601390 | AT1G67190.1 | 67.374 | 377 | 102 | 1 | 1 | 356 | 43 | 419 | 7.16e-177 | 498 |
| Msa0601390 | AT1G67190.2 | 67.374 | 377 | 102 | 1 | 1 | 356 | 43 | 419 | 7.16e-177 | 498 |
Find 71 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATCATCTGGTAAAATTT+TGG | 0.172000 | 4_2:-43992592 | None:intergenic |
| TGAGGATGAGGTTGTGGATT+TGG | 0.254844 | 4_2:+43992666 | Msa0601390:CDS |
| CAGTTTGGACAAGTTTATAT+TGG | 0.269366 | 4_2:+43992390 | Msa0601390:CDS |
| TCTGGAGAATGTTGTTGTTT+TGG | 0.290641 | 4_2:+43992786 | Msa0601390:CDS |
| TAAGCTGGAAATACTTGATT+TGG | 0.306970 | 4_2:+43992138 | Msa0601390:CDS |
| ATCGACATCTTCCATCAAAA+TGG | 0.308813 | 4_2:-43991996 | None:intergenic |
| AACCATGGATGTGGTGAAAT+TGG | 0.318949 | 4_2:-43993047 | None:intergenic |
| TTTAAAGAGGCTTAGGCTTT+GGG | 0.320285 | 4_2:+43992627 | Msa0601390:CDS |
| ATTTAAAGAGGCTTAGGCTT+TGG | 0.321881 | 4_2:+43992626 | Msa0601390:CDS |
| CACGGAAACCTCTGATAATT+CGG | 0.345988 | 4_2:-43992187 | None:intergenic |
| AGTGTCATACATCTTGATAT+TGG | 0.380971 | 4_2:+43992514 | Msa0601390:CDS |
| TGCGTTGGATTTGAGTCTTT+TGG | 0.381205 | 4_2:+43992246 | Msa0601390:CDS |
| CGGCTTCTGCTGTTATTGCT+TGG | 0.385178 | 4_2:+43992026 | Msa0601390:CDS |
| CGTCAAATTTAAAGAGGCTT+AGG | 0.387919 | 4_2:+43992620 | Msa0601390:CDS |
| TTTACAAGGCTCTTCTCATC+TGG | 0.390921 | 4_2:+43992768 | Msa0601390:CDS |
| TATGCCGAATGTTAACATTC+TGG | 0.391323 | 4_2:+43992099 | Msa0601390:CDS |
| TGTCCTTTAGCTCGAATGAT+TGG | 0.393437 | 4_2:+43991888 | Msa0601390:CDS |
| TGGAGCATAATTCCATTGTT+GGG | 0.394380 | 4_2:+43992158 | Msa0601390:CDS |
| AGCTTTGGAGCTTGTTAATC+CGG | 0.402983 | 4_2:+43992291 | Msa0601390:CDS |
| GTCGATCCTAAAATTCTTCA+AGG | 0.405823 | 4_2:-43992485 | None:intergenic |
| TTGGAGCATAATTCCATTGT+TGG | 0.407591 | 4_2:+43992157 | Msa0601390:CDS |
| AGAGATGGAGTTCTTCACTA+TGG | 0.408458 | 4_2:+43992745 | Msa0601390:CDS |
| CGAGATCGTCAAATTTAAAG+AGG | 0.422365 | 4_2:+43992614 | Msa0601390:CDS |
| TCAGCAACTTCACAATCATT+TGG | 0.423879 | 4_2:+43992569 | Msa0601390:CDS |
| TGATGATGAGGATGAGGTTG+TGG | 0.427773 | 4_2:+43992660 | Msa0601390:CDS |
| GTGTCCGAGGATTGAAGCTT+TGG | 0.433033 | 4_2:+43992276 | Msa0601390:CDS |
| TTAACATTCTGGAGATTTGT+GGG | 0.446810 | 4_2:+43992110 | Msa0601390:CDS |
| ATCTCCAGAATGTTAACATT+CGG | 0.457841 | 4_2:-43992103 | None:intergenic |
| TTGACGATCTCGAAATCATC+TGG | 0.458040 | 4_2:-43992603 | None:intergenic |
| GTTAACATTCTGGAGATTTG+TGG | 0.459161 | 4_2:+43992109 | Msa0601390:CDS |
| TTATGTTGAAGCAATCAGTT+TGG | 0.472225 | 4_2:+43992375 | Msa0601390:CDS |
| AGCTCCAAAGCTTCAATCCT+CGG | 0.473894 | 4_2:-43992280 | None:intergenic |
| TTTGGACAAGTTTATATTGG+AGG | 0.477597 | 4_2:+43992393 | Msa0601390:CDS |
| GGAAGATGTCGATGAATTCT+CGG | 0.479221 | 4_2:+43992006 | Msa0601390:CDS |
| GCATCAGACATTGCAATCTC+CGG | 0.479437 | 4_2:-43992310 | None:intergenic |
| CTCAAGAAGCTAGTCATTCA+CGG | 0.479475 | 4_2:+43992980 | Msa0601390:intron |
| GGATGTGATGTTTGATGATG+AGG | 0.482977 | 4_2:+43992648 | Msa0601390:CDS |
| TGACCAATCATTCGAGCTAA+AGG | 0.485889 | 4_2:-43991891 | None:intergenic |
| GTTCTTCACTATGGTTTACA+AGG | 0.499525 | 4_2:+43992754 | Msa0601390:CDS |
| AAGTTTATATTGGAGGCTGA+TGG | 0.502708 | 4_2:+43992400 | Msa0601390:CDS |
| GATTTGTGGGAGGCATAAGC+TGG | 0.505044 | 4_2:+43992123 | Msa0601390:CDS |
| CATTCACGGTGTTGTTTCCG+AGG | 0.515633 | 4_2:+43992994 | Msa0601390:CDS |
| TTGCTTGGCTTATGTACACC+AGG | 0.528196 | 4_2:+43992041 | Msa0601390:CDS |
| AGTTTATATTGGAGGCTGAT+GGG | 0.528821 | 4_2:+43992401 | Msa0601390:CDS |
| CAACTGCCTCAGAGTCTCCC+TGG | 0.529681 | 4_2:-43992059 | None:intergenic |
| AGCCAATTTCACCACATCCA+TGG | 0.531036 | 4_2:+43993045 | Msa0601390:CDS |
| CATCAGCTCAACCATGGATG+TGG | 0.539794 | 4_2:-43993056 | None:intergenic |
| CATCCATGGTTGAGCTGATG+AGG | 0.541436 | 4_2:+43993059 | Msa0601390:CDS |
| GGAGCATAATTCCATTGTTG+GGG | 0.547575 | 4_2:+43992159 | Msa0601390:CDS |
| GATGTTTGATGATGAGGATG+AGG | 0.563175 | 4_2:+43992654 | Msa0601390:CDS |
| TTCTTCATCAGATTTAGCCT+CGG | 0.564530 | 4_2:-43993011 | None:intergenic |
| TGTAATCAAAATCTCGAGAC+GGG | 0.572067 | 4_2:-43991936 | None:intergenic |
| TTGTGTTAGTATATCTGCGT+TGG | 0.586686 | 4_2:+43992231 | Msa0601390:CDS |
| ATTCGGCTCAACCCCAACAA+TGG | 0.586694 | 4_2:-43992170 | None:intergenic |
| CTGAGTTATGATGTGAGAGA+TGG | 0.590837 | 4_2:+43992730 | Msa0601390:CDS |
| ACATCTTGATATTGGCGAGA+CGG | 0.606995 | 4_2:+43992522 | Msa0601390:CDS |
| GGTTGAGAATCTTGAGAGTG+TGG | 0.608485 | 4_2:+43992543 | Msa0601390:CDS |
| TCTCCTCATCAGCTCAACCA+TGG | 0.619817 | 4_2:-43993062 | None:intergenic |
| AACTCAGAGATAAATGACTC+AGG | 0.621606 | 4_2:-43992714 | None:intergenic |
| GTGTAATCAAAATCTCGAGA+CGG | 0.622617 | 4_2:-43991937 | None:intergenic |
| GATTGCAATGTCTGATGCAA+TGG | 0.623873 | 4_2:+43992315 | Msa0601390:CDS |
| AATGGAAAGCGACTGCAACC+CGG | 0.628343 | 4_2:-43991978 | None:intergenic |
| GGGTTGAGCCGAATTATCAG+AGG | 0.628727 | 4_2:+43992179 | Msa0601390:CDS |
| AGAGATAAATGACTCAGGTG+TGG | 0.630363 | 4_2:-43992709 | None:intergenic |
| AACGAAAGTGATTTCAAACA+CGG | 0.631215 | 4_2:-43992205 | None:intergenic |
| ACTCAGGTGTGGAAAGCAAG+TGG | 0.642907 | 4_2:-43992698 | None:intergenic |
| TGCTTGGCTTATGTACACCA+GGG | 0.664685 | 4_2:+43992042 | Msa0601390:CDS |
| CGTCGAGCTACTCAATTCAA+CGG | 0.669195 | 4_2:-43992341 | None:intergenic |
| TGTACACCAGGGAGACTCTG+AGG | 0.674668 | 4_2:+43992053 | Msa0601390:CDS |
| ACATTCTGGAGATTTGTGGG+AGG | 0.676084 | 4_2:+43992113 | Msa0601390:CDS |
| GACGGGTCGTTGATAAATCG+CGG | 0.678396 | 4_2:-43991919 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATCATCTGGTAAAATTT+TGG | - | chr4_2:43992595-43992614 | None:intergenic | 25.0% |
| !! | GAAATCATCTGGTAAAATTT+TGG | - | chr4_2:43992595-43992614 | None:intergenic | 25.0% |
| ATCTCCAGAATGTTAACATT+CGG | - | chr4_2:43992106-43992125 | None:intergenic | 30.0% | |
| ! | TTAACATTCTGGAGATTTGT+GGG | + | chr4_2:43992110-43992129 | Msa0601390:CDS | 30.0% |
| TAAGCTGGAAATACTTGATT+TGG | + | chr4_2:43992138-43992157 | Msa0601390:CDS | 30.0% | |
| AACGAAAGTGATTTCAAACA+CGG | - | chr4_2:43992208-43992227 | None:intergenic | 30.0% | |
| TTATGTTGAAGCAATCAGTT+TGG | + | chr4_2:43992375-43992394 | Msa0601390:CDS | 30.0% | |
| CAGTTTGGACAAGTTTATAT+TGG | + | chr4_2:43992390-43992409 | Msa0601390:CDS | 30.0% | |
| TTTGGACAAGTTTATATTGG+AGG | + | chr4_2:43992393-43992412 | Msa0601390:CDS | 30.0% | |
| ! | CTTGAAGTTTTTGAACTCAT+TGG | + | chr4_2:43992454-43992473 | Msa0601390:CDS | 30.0% |
| AGTGTCATACATCTTGATAT+TGG | + | chr4_2:43992514-43992533 | Msa0601390:CDS | 30.0% | |
| ATCTCCAGAATGTTAACATT+CGG | - | chr4_2:43992106-43992125 | None:intergenic | 30.0% | |
| ! | TTAACATTCTGGAGATTTGT+GGG | + | chr4_2:43992110-43992129 | Msa0601390:CDS | 30.0% |
| TAAGCTGGAAATACTTGATT+TGG | + | chr4_2:43992138-43992157 | Msa0601390:CDS | 30.0% | |
| AACGAAAGTGATTTCAAACA+CGG | - | chr4_2:43992208-43992227 | None:intergenic | 30.0% | |
| TTATGTTGAAGCAATCAGTT+TGG | + | chr4_2:43992375-43992394 | Msa0601390:CDS | 30.0% | |
| CAGTTTGGACAAGTTTATAT+TGG | + | chr4_2:43992390-43992409 | Msa0601390:CDS | 30.0% | |
| TTTGGACAAGTTTATATTGG+AGG | + | chr4_2:43992393-43992412 | Msa0601390:CDS | 30.0% | |
| ! | CTTGAAGTTTTTGAACTCAT+TGG | + | chr4_2:43992454-43992473 | Msa0601390:CDS | 30.0% |
| AGTGTCATACATCTTGATAT+TGG | + | chr4_2:43992514-43992533 | Msa0601390:CDS | 30.0% | |
| TGTAATCAAAATCTCGAGAC+GGG | - | chr4_2:43991939-43991958 | None:intergenic | 35.0% | |
| GTGTAATCAAAATCTCGAGA+CGG | - | chr4_2:43991940-43991959 | None:intergenic | 35.0% | |
| ATCGACATCTTCCATCAAAA+TGG | - | chr4_2:43991999-43992018 | None:intergenic | 35.0% | |
| TATGCCGAATGTTAACATTC+TGG | + | chr4_2:43992099-43992118 | Msa0601390:CDS | 35.0% | |
| ! | GTTAACATTCTGGAGATTTG+TGG | + | chr4_2:43992109-43992128 | Msa0601390:CDS | 35.0% |
| TTGGAGCATAATTCCATTGT+TGG | + | chr4_2:43992157-43992176 | Msa0601390:CDS | 35.0% | |
| TGGAGCATAATTCCATTGTT+GGG | + | chr4_2:43992158-43992177 | Msa0601390:CDS | 35.0% | |
| TTGTGTTAGTATATCTGCGT+TGG | + | chr4_2:43992231-43992250 | Msa0601390:CDS | 35.0% | |
| AAGTTTATATTGGAGGCTGA+TGG | + | chr4_2:43992400-43992419 | Msa0601390:CDS | 35.0% | |
| AGTTTATATTGGAGGCTGAT+GGG | + | chr4_2:43992401-43992420 | Msa0601390:CDS | 35.0% | |
| ! | AGTTTTTGAACTCATTGGCA+AGG | + | chr4_2:43992459-43992478 | Msa0601390:CDS | 35.0% |
| ! | GTTTTTGAACTCATTGGCAA+GGG | + | chr4_2:43992460-43992479 | Msa0601390:CDS | 35.0% |
| ! | TTTTTGAACTCATTGGCAAG+GGG | + | chr4_2:43992461-43992480 | Msa0601390:CDS | 35.0% |
| GTCGATCCTAAAATTCTTCA+AGG | - | chr4_2:43992488-43992507 | None:intergenic | 35.0% | |
| TCAGCAACTTCACAATCATT+TGG | + | chr4_2:43992569-43992588 | Msa0601390:CDS | 35.0% | |
| CGAGATCGTCAAATTTAAAG+AGG | + | chr4_2:43992614-43992633 | Msa0601390:CDS | 35.0% | |
| CGTCAAATTTAAAGAGGCTT+AGG | + | chr4_2:43992620-43992639 | Msa0601390:CDS | 35.0% | |
| ATTTAAAGAGGCTTAGGCTT+TGG | + | chr4_2:43992626-43992645 | Msa0601390:CDS | 35.0% | |
| TTTAAAGAGGCTTAGGCTTT+GGG | + | chr4_2:43992627-43992646 | Msa0601390:CDS | 35.0% | |
| AACTCAGAGATAAATGACTC+AGG | - | chr4_2:43992717-43992736 | None:intergenic | 35.0% | |
| GTTCTTCACTATGGTTTACA+AGG | + | chr4_2:43992754-43992773 | Msa0601390:CDS | 35.0% | |
| !!! | TCTGGAGAATGTTGTTGTTT+TGG | + | chr4_2:43992786-43992805 | Msa0601390:CDS | 35.0% |
| !!! | AATGTTGTTGTTTTGGAGCT+TGG | + | chr4_2:43992793-43992812 | Msa0601390:CDS | 35.0% |
| ! | TTAATGATCTTTTCTCCCAG+TGG | + | chr4_2:43992827-43992846 | Msa0601390:intron | 35.0% |
| ! | TAATGATCTTTTCTCCCAGT+GGG | + | chr4_2:43992828-43992847 | Msa0601390:intron | 35.0% |
| !! | TGACTAGCTTCTTGAGAATA+GGG | - | chr4_2:43992976-43992995 | None:intergenic | 35.0% |
| !! | ATGACTAGCTTCTTGAGAAT+AGG | - | chr4_2:43992977-43992996 | None:intergenic | 35.0% |
| TTCTTCATCAGATTTAGCCT+CGG | - | chr4_2:43993014-43993033 | None:intergenic | 35.0% | |
| TGTAATCAAAATCTCGAGAC+GGG | - | chr4_2:43991939-43991958 | None:intergenic | 35.0% | |
| GTGTAATCAAAATCTCGAGA+CGG | - | chr4_2:43991940-43991959 | None:intergenic | 35.0% | |
| ATCGACATCTTCCATCAAAA+TGG | - | chr4_2:43991999-43992018 | None:intergenic | 35.0% | |
| TATGCCGAATGTTAACATTC+TGG | + | chr4_2:43992099-43992118 | Msa0601390:CDS | 35.0% | |
| ! | GTTAACATTCTGGAGATTTG+TGG | + | chr4_2:43992109-43992128 | Msa0601390:CDS | 35.0% |
| TTGGAGCATAATTCCATTGT+TGG | + | chr4_2:43992157-43992176 | Msa0601390:CDS | 35.0% | |
| TGGAGCATAATTCCATTGTT+GGG | + | chr4_2:43992158-43992177 | Msa0601390:CDS | 35.0% | |
| TTGTGTTAGTATATCTGCGT+TGG | + | chr4_2:43992231-43992250 | Msa0601390:CDS | 35.0% | |
| AAGTTTATATTGGAGGCTGA+TGG | + | chr4_2:43992400-43992419 | Msa0601390:CDS | 35.0% | |
| AGTTTATATTGGAGGCTGAT+GGG | + | chr4_2:43992401-43992420 | Msa0601390:CDS | 35.0% | |
| ! | AGTTTTTGAACTCATTGGCA+AGG | + | chr4_2:43992459-43992478 | Msa0601390:CDS | 35.0% |
| ! | GTTTTTGAACTCATTGGCAA+GGG | + | chr4_2:43992460-43992479 | Msa0601390:CDS | 35.0% |
| ! | TTTTTGAACTCATTGGCAAG+GGG | + | chr4_2:43992461-43992480 | Msa0601390:CDS | 35.0% |
| GTCGATCCTAAAATTCTTCA+AGG | - | chr4_2:43992488-43992507 | None:intergenic | 35.0% | |
| TCAGCAACTTCACAATCATT+TGG | + | chr4_2:43992569-43992588 | Msa0601390:CDS | 35.0% | |
| CGAGATCGTCAAATTTAAAG+AGG | + | chr4_2:43992614-43992633 | Msa0601390:CDS | 35.0% | |
| CGTCAAATTTAAAGAGGCTT+AGG | + | chr4_2:43992620-43992639 | Msa0601390:CDS | 35.0% | |
| ATTTAAAGAGGCTTAGGCTT+TGG | + | chr4_2:43992626-43992645 | Msa0601390:CDS | 35.0% | |
| TTTAAAGAGGCTTAGGCTTT+GGG | + | chr4_2:43992627-43992646 | Msa0601390:CDS | 35.0% | |
| AACTCAGAGATAAATGACTC+AGG | - | chr4_2:43992717-43992736 | None:intergenic | 35.0% | |
| GTTCTTCACTATGGTTTACA+AGG | + | chr4_2:43992754-43992773 | Msa0601390:CDS | 35.0% | |
| !!! | TCTGGAGAATGTTGTTGTTT+TGG | + | chr4_2:43992786-43992805 | Msa0601390:CDS | 35.0% |
| !!! | AATGTTGTTGTTTTGGAGCT+TGG | + | chr4_2:43992793-43992812 | Msa0601390:CDS | 35.0% |
| ! | TTAATGATCTTTTCTCCCAG+TGG | + | chr4_2:43992827-43992846 | Msa0601390:intron | 35.0% |
| ! | TAATGATCTTTTCTCCCAGT+GGG | + | chr4_2:43992828-43992847 | Msa0601390:intron | 35.0% |
| !! | TGACTAGCTTCTTGAGAATA+GGG | - | chr4_2:43992976-43992995 | None:intergenic | 35.0% |
| !! | ATGACTAGCTTCTTGAGAAT+AGG | - | chr4_2:43992977-43992996 | None:intergenic | 35.0% |
| TTCTTCATCAGATTTAGCCT+CGG | - | chr4_2:43993014-43993033 | None:intergenic | 35.0% | |
| ! | TGTCCTTTAGCTCGAATGAT+TGG | + | chr4_2:43991888-43991907 | Msa0601390:CDS | 40.0% |
| TGACCAATCATTCGAGCTAA+AGG | - | chr4_2:43991894-43991913 | None:intergenic | 40.0% | |
| !! | CAGACCATTTTTCAGACATC+CGG | + | chr4_2:43991959-43991978 | Msa0601390:CDS | 40.0% |
| !! | AGACCATTTTTCAGACATCC+GGG | + | chr4_2:43991960-43991979 | Msa0601390:CDS | 40.0% |
| GGAAGATGTCGATGAATTCT+CGG | + | chr4_2:43992006-43992025 | Msa0601390:CDS | 40.0% | |
| GGAGCATAATTCCATTGTTG+GGG | + | chr4_2:43992159-43992178 | Msa0601390:CDS | 40.0% | |
| CACGGAAACCTCTGATAATT+CGG | - | chr4_2:43992190-43992209 | None:intergenic | 40.0% | |
| ! | TGCGTTGGATTTGAGTCTTT+TGG | + | chr4_2:43992246-43992265 | Msa0601390:CDS | 40.0% |
| !! | AGCTTTGGAGCTTGTTAATC+CGG | + | chr4_2:43992291-43992310 | Msa0601390:CDS | 40.0% |
| GATTGCAATGTCTGATGCAA+TGG | + | chr4_2:43992315-43992334 | Msa0601390:CDS | 40.0% | |
| ! | AGGGGACCTTGAAGAATTTT+AGG | + | chr4_2:43992479-43992498 | Msa0601390:CDS | 40.0% |
| ACATCTTGATATTGGCGAGA+CGG | + | chr4_2:43992522-43992541 | Msa0601390:CDS | 40.0% | |
| TTGACGATCTCGAAATCATC+TGG | - | chr4_2:43992606-43992625 | None:intergenic | 40.0% | |
| !! | GGATGTGATGTTTGATGATG+AGG | + | chr4_2:43992648-43992667 | Msa0601390:CDS | 40.0% |
| !! | GATGTTTGATGATGAGGATG+AGG | + | chr4_2:43992654-43992673 | Msa0601390:CDS | 40.0% |
| AGAGATAAATGACTCAGGTG+TGG | - | chr4_2:43992712-43992731 | None:intergenic | 40.0% | |
| CTGAGTTATGATGTGAGAGA+TGG | + | chr4_2:43992730-43992749 | Msa0601390:CDS | 40.0% | |
| AGAGATGGAGTTCTTCACTA+TGG | + | chr4_2:43992745-43992764 | Msa0601390:CDS | 40.0% | |
| TTTACAAGGCTCTTCTCATC+TGG | + | chr4_2:43992768-43992787 | Msa0601390:CDS | 40.0% | |
| CTCAAGAAGCTAGTCATTCA+CGG | + | chr4_2:43992980-43992999 | Msa0601390:intron | 40.0% | |
| AACCATGGATGTGGTGAAAT+TGG | - | chr4_2:43993050-43993069 | None:intergenic | 40.0% | |
| ! | TGTCCTTTAGCTCGAATGAT+TGG | + | chr4_2:43991888-43991907 | Msa0601390:CDS | 40.0% |
| TGACCAATCATTCGAGCTAA+AGG | - | chr4_2:43991894-43991913 | None:intergenic | 40.0% | |
| !! | CAGACCATTTTTCAGACATC+CGG | + | chr4_2:43991959-43991978 | Msa0601390:CDS | 40.0% |
| !! | AGACCATTTTTCAGACATCC+GGG | + | chr4_2:43991960-43991979 | Msa0601390:CDS | 40.0% |
| GGAAGATGTCGATGAATTCT+CGG | + | chr4_2:43992006-43992025 | Msa0601390:CDS | 40.0% | |
| GGAGCATAATTCCATTGTTG+GGG | + | chr4_2:43992159-43992178 | Msa0601390:CDS | 40.0% | |
| CACGGAAACCTCTGATAATT+CGG | - | chr4_2:43992190-43992209 | None:intergenic | 40.0% | |
| ! | TGCGTTGGATTTGAGTCTTT+TGG | + | chr4_2:43992246-43992265 | Msa0601390:CDS | 40.0% |
| !! | AGCTTTGGAGCTTGTTAATC+CGG | + | chr4_2:43992291-43992310 | Msa0601390:CDS | 40.0% |
| GATTGCAATGTCTGATGCAA+TGG | + | chr4_2:43992315-43992334 | Msa0601390:CDS | 40.0% | |
| ! | AGGGGACCTTGAAGAATTTT+AGG | + | chr4_2:43992479-43992498 | Msa0601390:CDS | 40.0% |
| ACATCTTGATATTGGCGAGA+CGG | + | chr4_2:43992522-43992541 | Msa0601390:CDS | 40.0% | |
| TTGACGATCTCGAAATCATC+TGG | - | chr4_2:43992606-43992625 | None:intergenic | 40.0% | |
| !! | GGATGTGATGTTTGATGATG+AGG | + | chr4_2:43992648-43992667 | Msa0601390:CDS | 40.0% |
| !! | GATGTTTGATGATGAGGATG+AGG | + | chr4_2:43992654-43992673 | Msa0601390:CDS | 40.0% |
| AGAGATAAATGACTCAGGTG+TGG | - | chr4_2:43992712-43992731 | None:intergenic | 40.0% | |
| CTGAGTTATGATGTGAGAGA+TGG | + | chr4_2:43992730-43992749 | Msa0601390:CDS | 40.0% | |
| AGAGATGGAGTTCTTCACTA+TGG | + | chr4_2:43992745-43992764 | Msa0601390:CDS | 40.0% | |
| TTTACAAGGCTCTTCTCATC+TGG | + | chr4_2:43992768-43992787 | Msa0601390:CDS | 40.0% | |
| CTCAAGAAGCTAGTCATTCA+CGG | + | chr4_2:43992980-43992999 | Msa0601390:intron | 40.0% | |
| AACCATGGATGTGGTGAAAT+TGG | - | chr4_2:43993050-43993069 | None:intergenic | 40.0% | |
| CAACCCGGATGTCTGAAAAA+TGG | - | chr4_2:43991966-43991985 | None:intergenic | 45.0% | |
| !! | GCAGTCGCTTTCCATTTTGA+TGG | + | chr4_2:43991985-43992004 | Msa0601390:CDS | 45.0% |
| TTGCTTGGCTTATGTACACC+AGG | + | chr4_2:43992041-43992060 | Msa0601390:CDS | 45.0% | |
| TGCTTGGCTTATGTACACCA+GGG | + | chr4_2:43992042-43992061 | Msa0601390:CDS | 45.0% | |
| ! | ACATTCTGGAGATTTGTGGG+AGG | + | chr4_2:43992113-43992132 | Msa0601390:CDS | 45.0% |
| AGCTCCAAAGCTTCAATCCT+CGG | - | chr4_2:43992283-43992302 | None:intergenic | 45.0% | |
| GCATCAGACATTGCAATCTC+CGG | - | chr4_2:43992313-43992332 | None:intergenic | 45.0% | |
| CGTCGAGCTACTCAATTCAA+CGG | - | chr4_2:43992344-43992363 | None:intergenic | 45.0% | |
| GGTTGAGAATCTTGAGAGTG+TGG | + | chr4_2:43992543-43992562 | Msa0601390:CDS | 45.0% | |
| ! | TGATGATGAGGATGAGGTTG+TGG | + | chr4_2:43992660-43992679 | Msa0601390:CDS | 45.0% |
| TGAGGATGAGGTTGTGGATT+TGG | + | chr4_2:43992666-43992685 | Msa0601390:CDS | 45.0% | |
| !!! | TTGTTGTTTTGGAGCTTGGC+TGG | + | chr4_2:43992797-43992816 | Msa0601390:CDS | 45.0% |
| AGCCAATTTCACCACATCCA+TGG | + | chr4_2:43993045-43993064 | Msa0601390:CDS | 45.0% | |
| CAACCCGGATGTCTGAAAAA+TGG | - | chr4_2:43991966-43991985 | None:intergenic | 45.0% | |
| !! | GCAGTCGCTTTCCATTTTGA+TGG | + | chr4_2:43991985-43992004 | Msa0601390:CDS | 45.0% |
| TTGCTTGGCTTATGTACACC+AGG | + | chr4_2:43992041-43992060 | Msa0601390:CDS | 45.0% | |
| TGCTTGGCTTATGTACACCA+GGG | + | chr4_2:43992042-43992061 | Msa0601390:CDS | 45.0% | |
| ! | ACATTCTGGAGATTTGTGGG+AGG | + | chr4_2:43992113-43992132 | Msa0601390:CDS | 45.0% |
| AGCTCCAAAGCTTCAATCCT+CGG | - | chr4_2:43992283-43992302 | None:intergenic | 45.0% | |
| GCATCAGACATTGCAATCTC+CGG | - | chr4_2:43992313-43992332 | None:intergenic | 45.0% | |
| CGTCGAGCTACTCAATTCAA+CGG | - | chr4_2:43992344-43992363 | None:intergenic | 45.0% | |
| GGTTGAGAATCTTGAGAGTG+TGG | + | chr4_2:43992543-43992562 | Msa0601390:CDS | 45.0% | |
| ! | TGATGATGAGGATGAGGTTG+TGG | + | chr4_2:43992660-43992679 | Msa0601390:CDS | 45.0% |
| TGAGGATGAGGTTGTGGATT+TGG | + | chr4_2:43992666-43992685 | Msa0601390:CDS | 45.0% | |
| !!! | TTGTTGTTTTGGAGCTTGGC+TGG | + | chr4_2:43992797-43992816 | Msa0601390:CDS | 45.0% |
| AGCCAATTTCACCACATCCA+TGG | + | chr4_2:43993045-43993064 | Msa0601390:CDS | 45.0% | |
| ! | GACGGGTCGTTGATAAATCG+CGG | - | chr4_2:43991922-43991941 | None:intergenic | 50.0% |
| AATGGAAAGCGACTGCAACC+CGG | - | chr4_2:43991981-43992000 | None:intergenic | 50.0% | |
| CGGCTTCTGCTGTTATTGCT+TGG | + | chr4_2:43992026-43992045 | Msa0601390:CDS | 50.0% | |
| ! | GATTTGTGGGAGGCATAAGC+TGG | + | chr4_2:43992123-43992142 | Msa0601390:CDS | 50.0% |
| ATTCGGCTCAACCCCAACAA+TGG | - | chr4_2:43992173-43992192 | None:intergenic | 50.0% | |
| GGGTTGAGCCGAATTATCAG+AGG | + | chr4_2:43992179-43992198 | Msa0601390:CDS | 50.0% | |
| GTGTCCGAGGATTGAAGCTT+TGG | + | chr4_2:43992276-43992295 | Msa0601390:CDS | 50.0% | |
| ACTCAGGTGTGGAAAGCAAG+TGG | - | chr4_2:43992701-43992720 | None:intergenic | 50.0% | |
| !! | CATTCACGGTGTTGTTTCCG+AGG | + | chr4_2:43992994-43993013 | Msa0601390:CDS | 50.0% |
| CATCAGCTCAACCATGGATG+TGG | - | chr4_2:43993059-43993078 | None:intergenic | 50.0% | |
| CATCCATGGTTGAGCTGATG+AGG | + | chr4_2:43993059-43993078 | Msa0601390:CDS | 50.0% | |
| TCTCCTCATCAGCTCAACCA+TGG | - | chr4_2:43993065-43993084 | None:intergenic | 50.0% | |
| ! | GACGGGTCGTTGATAAATCG+CGG | - | chr4_2:43991922-43991941 | None:intergenic | 50.0% |
| AATGGAAAGCGACTGCAACC+CGG | - | chr4_2:43991981-43992000 | None:intergenic | 50.0% | |
| CGGCTTCTGCTGTTATTGCT+TGG | + | chr4_2:43992026-43992045 | Msa0601390:CDS | 50.0% | |
| ! | GATTTGTGGGAGGCATAAGC+TGG | + | chr4_2:43992123-43992142 | Msa0601390:CDS | 50.0% |
| ATTCGGCTCAACCCCAACAA+TGG | - | chr4_2:43992173-43992192 | None:intergenic | 50.0% | |
| GGGTTGAGCCGAATTATCAG+AGG | + | chr4_2:43992179-43992198 | Msa0601390:CDS | 50.0% | |
| GTGTCCGAGGATTGAAGCTT+TGG | + | chr4_2:43992276-43992295 | Msa0601390:CDS | 50.0% | |
| ACTCAGGTGTGGAAAGCAAG+TGG | - | chr4_2:43992701-43992720 | None:intergenic | 50.0% | |
| !! | CATTCACGGTGTTGTTTCCG+AGG | + | chr4_2:43992994-43993013 | Msa0601390:CDS | 50.0% |
| CATCAGCTCAACCATGGATG+TGG | - | chr4_2:43993059-43993078 | None:intergenic | 50.0% | |
| CATCCATGGTTGAGCTGATG+AGG | + | chr4_2:43993059-43993078 | Msa0601390:CDS | 50.0% | |
| TCTCCTCATCAGCTCAACCA+TGG | - | chr4_2:43993065-43993084 | None:intergenic | 50.0% | |
| TGTACACCAGGGAGACTCTG+AGG | + | chr4_2:43992053-43992072 | Msa0601390:CDS | 55.0% | |
| !!! | TTTTGGTGTCTGCGTGTCCG+AGG | + | chr4_2:43992263-43992282 | Msa0601390:CDS | 55.0% |
| ! | TCTTTTCTCCCAGTGGGTCG+AGG | + | chr4_2:43992834-43992853 | Msa0601390:intron | 55.0% |
| ! | CTTTTCTCCCAGTGGGTCGA+GGG | + | chr4_2:43992835-43992854 | Msa0601390:intron | 55.0% |
| ! | TTTTCTCCCAGTGGGTCGAG+GGG | + | chr4_2:43992836-43992855 | Msa0601390:intron | 55.0% |
| TGTACACCAGGGAGACTCTG+AGG | + | chr4_2:43992053-43992072 | Msa0601390:CDS | 55.0% | |
| !!! | TTTTGGTGTCTGCGTGTCCG+AGG | + | chr4_2:43992263-43992282 | Msa0601390:CDS | 55.0% |
| ! | TCTTTTCTCCCAGTGGGTCG+AGG | + | chr4_2:43992834-43992853 | Msa0601390:intron | 55.0% |
| ! | CTTTTCTCCCAGTGGGTCGA+GGG | + | chr4_2:43992835-43992854 | Msa0601390:intron | 55.0% |
| ! | TTTTCTCCCAGTGGGTCGAG+GGG | + | chr4_2:43992836-43992855 | Msa0601390:intron | 55.0% |
| CAACTGCCTCAGAGTCTCCC+TGG | - | chr4_2:43992062-43992081 | None:intergenic | 60.0% | |
| CAACTGCCTCAGAGTCTCCC+TGG | - | chr4_2:43992062-43992081 | None:intergenic | 60.0% | |
| AAGCAGCCCCTCGACCCACT+GGG | - | chr4_2:43992845-43992864 | None:intergenic | 65.0% | |
| TAAGCAGCCCCTCGACCCAC+TGG | - | chr4_2:43992846-43992865 | None:intergenic | 65.0% | |
| AAGCAGCCCCTCGACCCACT+GGG | - | chr4_2:43992845-43992864 | None:intergenic | 65.0% | |
| TAAGCAGCCCCTCGACCCAC+TGG | - | chr4_2:43992846-43992865 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 43991887 | 43993120 | 43991887 | ID=Msa0601390;Name=Msa0601390 |
| chr4_2 | mRNA | 43991887 | 43993120 | 43991887 | ID=Msa0601390-mRNA-1;Parent=Msa0601390;Name=Msa0601390-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|2|0|356 |
| chr4_2 | exon | 43991887 | 43992822 | 43991887 | ID=Msa0601390-mRNA-1:exon:9655;Parent=Msa0601390-mRNA-1 |
| chr4_2 | exon | 43992986 | 43993120 | 43992986 | ID=Msa0601390-mRNA-1:exon:9656;Parent=Msa0601390-mRNA-1 |
| chr4_2 | CDS | 43991887 | 43992822 | 43991887 | ID=Msa0601390-mRNA-1:cds;Parent=Msa0601390-mRNA-1 |
| chr4_2 | CDS | 43992986 | 43993120 | 43992986 | ID=Msa0601390-mRNA-1:cds;Parent=Msa0601390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
