AlfalfaGEDB | Msa0831130

M. sativa cultivar zhongmu-4 / Msa0831130

KEGG: -
GO: -
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831130	XP_003611359.2	95.238	798	38	0	4	801	32	829	0.0	1574

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831130	sp\|Q7FAZ3\|LERK1_ORYSJ	45.217	805	398	20	25	801	24	813	0.0	665

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831130	G7JXG0	95.238	798	38	0	4	801	3	800	0.0	1572

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002250	Msa0831130	0.812894	3.368716e-51	-8.615850e-47
Msa0015090	Msa0831130	0.812952	3.272761e-51	-8.615850e-47
Msa0017320	Msa0831130	0.813555	2.412556e-51	-8.615850e-47
Msa0018070	Msa0831130	0.807200	5.676780e-50	-8.615850e-47
Msa0031520	Msa0831130	0.802342	5.871421e-49	-8.615850e-47
Msa0038870	Msa0831130	0.817042	4.048186e-52	-8.615850e-47
Msa0046560	Msa0831130	0.800881	1.170722e-48	-8.615850e-47
Msa0049750	Msa0831130	0.814404	1.567447e-51	-8.615850e-47
Msa0065950	Msa0831130	0.806781	6.961020e-50	-8.615850e-47
Msa0090550	Msa0831130	0.812509	4.091536e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831130	MtrunA17_Chr5g0399591	95.238	798	38	0	4	801	3	800	0.0	1572
Msa0831130	MtrunA17_Chr5g0399561	86.318	804	102	5	4	801	2	803	0.0	1452
Msa0831130	MtrunA17_Chr2g0311521	48.106	792	375	15	24	800	260	1030	0.0	719
Msa0831130	MtrunA17_Chr8g0338471	48.432	797	363	21	30	798	34	810	0.0	709
Msa0831130	MtrunA17_Chr2g0311551	47.415	793	371	18	26	800	260	1024	0.0	701
Msa0831130	MtrunA17_Chr2g0311541	46.835	790	382	16	26	799	19	786	0.0	695
Msa0831130	MtrunA17_Chr8g0338501	47.559	799	369	21	30	798	63	841	0.0	694
Msa0831130	MtrunA17_Chr8g0338531	44.622	753	351	19	93	797	12	746	0.0	587
Msa0831130	MtrunA17_Chr4g0063701	39.033	848	426	27	1	796	1	809	4.40e-170	511
Msa0831130	MtrunA17_Chr5g0394381	34.788	802	451	23	11	792	10	759	1.17e-138	429

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831130	AT5G24080.2	31.818	836	492	29	6	794	10	814	4.38e-111	359
Msa0831130	AT1G34300.1	31.382	803	453	28	33	800	35	774	3.15e-100	329
Msa0831130	AT4G00340.1	33.504	782	436	26	37	784	30	761	1.46e-98	325
Msa0831130	AT4G00340.2	32.988	773	431	25	37	784	30	740	6.00e-97	320
Msa0831130	AT5G24080.3	32.062	708	420	22	127	794	1	687	4.17e-96	316
Msa0831130	AT5G24080.1	32.062	708	420	22	127	794	1	687	4.17e-96	316
Msa0831130	AT2G19130.1	30.806	831	497	29	1	800	1	784	2.53e-90	303
Msa0831130	AT4G21390.1	29.216	842	509	26	8	799	12	816	2.37e-80	276
Msa0831130	AT5G35370.1	29.184	723	409	20	127	791	135	812	5.55e-80	275
Msa0831130	AT4G32300.1	46.557	305	152	5	500	799	483	781	3.70e-79	272

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Find 162 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGAGTTTCTCCTCT+TGG	0.437024	5_4:-4141351	Msa0831130:CDS
AAAAGACTGCCTATTGCGAA+TGG	0.574550	5_4:-4141408	Msa0831130:CDS
AAAATGGTGATGGTGGGTCA+GGG	0.549802	5_4:+4140281	None:intergenic
AAAGATCTCTGACTTTGGTT+TGG	0.396229	5_4:-4140698	Msa0831130:CDS
AAAGTTGATGTTTACAGCTT+TGG	0.318268	5_4:-4140574	Msa0831130:CDS
AACAAGGATGGACTATTATG+AGG	0.522416	5_4:-4141803	Msa0831130:CDS
AACCTCGTACAAGCACCGAC+AGG	0.601870	5_4:-4142389	Msa0831130:CDS
AAGACTGAGTTGAGAGCAAT+TGG	0.370989	5_4:-4140982	Msa0831130:CDS
AAGAGATTGATTAGGCAAAA+GGG	0.517414	5_4:+4142187	None:intergenic
AAGTCAAGGAATCGAACTGA+AGG	0.590393	5_4:+4140258	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACCTGAAAAAACCATTGTT+TGG	-	chr5_4:4140469-4140488	Msa0831130:CDS	30.0%
AAGAGATTGATTAGGCAAAA+GGG	+	chr5_4:4140721-4140740	None:intergenic	30.0%
CCTAATTCAAGAGATTGATT+AGG	+	chr5_4:4140729-4140748	None:intergenic	30.0%
CCTAATCAATCTCTTGAATT+AGG	-	chr5_4:4140726-4140745	Msa0831130:CDS	30.0%
AATCAATCTCTTGAATTAGG+TGG	-	chr5_4:4140729-4140748	Msa0831130:CDS	30.0%
AGAGCAACACTTGATTATTA+TGG	-	chr5_4:4141038-4141057	Msa0831130:CDS	30.0%
ATATTCAATGAAATGGGTAG+TGG	-	chr5_4:4141152-4141171	Msa0831130:CDS	30.0%
CTATAATAGCTATTGTTCCA+TGG	-	chr5_4:4141184-4141203	Msa0831130:CDS	30.0%
AATCATGTGTAGTTGAAGAA+AGG	+	chr5_4:4141580-4141599	None:intergenic	30.0%
ACCTTTGTAAACAATTCCAA+AGG	+	chr5_4:4141822-4141841	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	4140261	4142666	4140261	ID=Msa0831130;Name=Msa0831130
chr5_4	mRNA	4140261	4142666	4140261	ID=Msa0831130-mRNA-1;Parent=Msa0831130;Name=Msa0831130-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|801
chr5_4	exon	4140261	4142666	4140261	ID=Msa0831130-mRNA-1:exon:1678;Parent=Msa0831130-mRNA-1
chr5_4	CDS	4140261	4142666	4140261	ID=Msa0831130-mRNA-1:cds;Parent=Msa0831130-mRNA-1

Gene Sequence

>Msa0831130

ATGGCTTCTTCTTCTTCTTCTACCTTATTCATAATTTTCATTCTATTTCTTCAACTTGTGTTAGTCTTTGGAAACGTTACTCGAAGTTCTACACTATCCACCACAAACAACAATTCATGGCTGTCACCTTCTGGTGAATTTGCTTTCGGATTTCGACAACTTAGTATAACAACAAACCTCTTCATGCTTGCAATATGGTACAACAAAATACCTGAAAAAACCATTGTTTGGAGTGCTAAAAACACAAACAACAACAACCTCGTACAAGCACCGACAGGATCACAAGTTCAGCTAACATCAGGAGGACTCACGTTGACAACTCTACAAGGTGAATCCATTTGGACAGCACAACCAAACACTGCTGTTTCCTATGGAATCATGCATGACACTGGAAACTTTGTTCTTGTGAACAAAAATTCTACAATTGTTTGGGAAAGTTTCAAGTTTCCTACTGATACCCTTTTGCCTAATCAATCTCTTGAATTAGGTGGAAACATAACTTCTAGATTCTCTGAGACCAATTACACAAGTGGGAGGTTCCAACTTCATTTTCGTGATGATGATCACAATCTCATGTTAAGTCCACTTGCATGGCCTACTCAATTACGTTACAAATTTTACTATAGAATTGATGTTAATAACTCTGCATCTTCAAGTTTAGTTTTTGATGAATCAGGAGATATTTATGTTGAAACAAATAATAATGGTACTACTAGAATCAAACCTCCGGGTACACAATGGAAAAATTTAGATTTTGATCCTAAGTTGTATTATTATAGAGCAACACTTGATTATTATGGAGTTTTGACACAATATTCTCATCCAAGGGACACTAAAGCAAAACAAGGATGGACTATTATGAGGTATATTCCTGAAAACATTTGCATTGCAATATTCAATGAAATGGGTAGTGGAACTTGTGGCTATAATAGCTATTGTTCCATGGAAAATCAGAGACCTACTTGTAAATGTCCTTATGGTTATTCATTGATAGATCCAAGTAATCAATTTGGCGGGTGTCAACTCAATTTCACACTTGGTTGTGGAGCTGATAATGGTGACGGATTGAATGTGAAGCCAGAAGATTTATATGAGTTTACTGTTCTTAGAGATGTGGATTGGCCTTTATCAGATTATGAAAAGATGCAACCTTATTCTCAACAGGATTGTCAACAGACTTGTTTGCATGATTGCATGTGTGCGGTAGCAATTTTCAATAACAATACTTGTTGGAAGAAAAGACTGCCTATTGCGAATGGAAGAGCACAAAGTGGTGGACAATTGGTACTTGTGAAAACAAGAGTTTCTCCTCTTGGCCTTTCTTCAACTACACATGATTCGAAGAAAGACAACCGGGTTAAGCCGATTCTTCAAGGTTTACTTATTAGTTCCACTGTCTTCAATAGCATACTCTTAGCTGCGGTTGTTTTTATGACTTTGTTGAAGCCGAAAAGGGTTGTCCAAGCTGCACCTCTGGTGGAAACAAATTTATGTTCGTTTAGTTATGACGCATTAAAAGAAGCTACGTGGGGTTTTAGTGAAGAACTAGGTAGAGGGTCCTTTGGAATTGTTTACAAAGGTGAGTTAAAAGTAGGATCATCTTGCAATGTTGTTGCTGTTAAGAGATTGGATAGGTTAGCGGAGGATCGCGAGAAGGAATTTAAGACTGAGTTGAGAGCAATTGGAAAAACCTGCCACAAAAACTTGGTAAGGTTGGTTGGATTTTGTGATGAAGGAATGCATAGAATGTTGGTATATGAGTTCATGAGCAATGGTAGTCTTGCAAATATCTTGTTTGGAGAAACCAAACCCATTTGGAATCAAAGGGTTGGATTTTCTTTGGGGATTGCAAGAGGGTTGGTGTATTTACATGAAGAGTGTGACACTCCTATTATTCATTGTGACATAAAGCCTCAAAATATACTCATAGATGAGTACTTTACGGCAAAGATCTCTGACTTTGGTTTGGCCAAGTTGTTATTGGCTGATCAAAGTAGAACAAATACAATGATCCGAGGAACACGAGGATATGTGGCTCCTGAATGGTTCAAGAATGTTCCTGTGACAGCTAAAGTTGATGTTTACAGCTTTGGTTCCATGTTGTTGGAAATTGTTTGCTGCAGAAAAAGTGTGTTGCTGATGGAGTCAGGGGAGGAAGAAAAGGCAATTTTGACAGATTGGGCTTGTGATTGTTATATGGAAGGGAGAATAGATGCTTTGGTGGAAAATGATCAAGAGGCCTTGGATGACATTGACAGGTTAGAAAAGTGGATAAAGATAGCAATTTGGTGCATTCAAGAACATCCTGAAATGAGACCAACAATGAGGATGGTCATGCAAATGCTAGAAGGTGTGGTTCAAGTCCCTGACCCACCATCACCATTTTCCTTCAGTTCGATTCCTTGA

Protein sequence

>Msa0831130

MASSSSSTLFIIFILFLQLVLVFGNVTRSSTLSTTNNNSWLSPSGEFAFGFRQLSITTNLFMLAIWYNKIPEKTIVWSAKNTNNNNLVQAPTGSQVQLTSGGLTLTTLQGESIWTAQPNTAVSYGIMHDTGNFVLVNKNSTIVWESFKFPTDTLLPNQSLELGGNITSRFSETNYTSGRFQLHFRDDDHNLMLSPLAWPTQLRYKFYYRIDVNNSASSSLVFDESGDIYVETNNNGTTRIKPPGTQWKNLDFDPKLYYYRATLDYYGVLTQYSHPRDTKAKQGWTIMRYIPENICIAIFNEMGSGTCGYNSYCSMENQRPTCKCPYGYSLIDPSNQFGGCQLNFTLGCGADNGDGLNVKPEDLYEFTVLRDVDWPLSDYEKMQPYSQQDCQQTCLHDCMCAVAIFNNNTCWKKRLPIANGRAQSGGQLVLVKTRVSPLGLSSTTHDSKKDNRVKPILQGLLISSTVFNSILLAAVVFMTLLKPKRVVQAAPLVETNLCSFSYDALKEATWGFSEELGRGSFGIVYKGELKVGSSCNVVAVKRLDRLAEDREKEFKTELRAIGKTCHKNLVRLVGFCDEGMHRMLVYEFMSNGSLANILFGETKPIWNQRVGFSLGIARGLVYLHEECDTPIIHCDIKPQNILIDEYFTAKISDFGLAKLLLADQSRTNTMIRGTRGYVAPEWFKNVPVTAKVDVYSFGSMLLEIVCCRKSVLLMESGEEEKAILTDWACDCYMEGRIDALVENDQEALDDIDRLEKWIKIAIWCIQEHPEMRPTMRMVMQMLEGVVQVPDPPSPFSFSSIP*