AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1018040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1018040 MtrunA17_Chr7g0233351 98.455 453 7 0 1 453 1 453 0.0 930
Msa1018040 MtrunA17_Chr8g0336161 74.503 302 68 3 161 453 157 458 1.03e-152 441
Msa1018040 MtrunA17_Chr4g0055371 57.269 454 148 9 2 444 5 423 6.31e-149 431
Msa1018040 MtrunA17_Chr3g0114791 60.385 260 81 4 167 417 153 399 1.99e-106 322
Msa1018040 MtrunA17_Chr5g0424111 60.927 302 89 5 148 439 151 433 4.48e-106 322
Msa1018040 MtrunA17_Chr8g0377671 39.000 200 99 2 189 365 17 216 1.06e-34 130
Msa1018040 MtrunA17_Chr8g0377671 34.759 187 122 0 188 374 62 248 4.20e-30 118
Msa1018040 MtrunA17_Chr8g0377671 38.418 177 106 2 173 349 96 269 3.15e-28 113
Msa1018040 MtrunA17_Chr8g0377671 34.211 152 77 1 238 366 20 171 9.06e-19 86.3
Msa1018040 MtrunA17_Chr8g0377191 41.011 178 105 0 191 368 11 188 6.63e-34 126
Msa1018040 MtrunA17_Chr8g0377191 35.417 144 93 0 196 339 62 205 7.72e-20 87.4
Msa1018040 MtrunA17_Chr8g0380791 32.353 238 151 2 191 428 12 239 3.67e-32 130
Msa1018040 MtrunA17_Chr8g0380791 34.266 143 91 1 226 368 4 143 1.23e-19 92.0
Msa1018040 MtrunA17_Chr8g0380791 39.130 92 56 0 189 280 102 193 2.40e-14 75.5
Msa1018040 MtrunA17_Chr8g0382971 37.356 174 109 0 194 367 73 246 4.06e-30 120
Msa1018040 MtrunA17_Chr8g0382971 35.393 178 115 0 190 367 46 223 3.90e-28 114
Msa1018040 MtrunA17_Chr8g0382971 34.911 169 108 1 188 354 113 281 1.93e-23 100
Msa1018040 MtrunA17_Chr8g0382971 31.579 133 87 2 238 368 25 155 1.64e-12 68.6
Msa1018040 MtrunA17_Chr4g0059911 30.453 243 137 4 193 411 33 267 7.20e-28 114
Msa1018040 MtrunA17_Chr4g0059911 31.818 132 89 1 238 368 9 140 4.77e-15 76.6
Msa1018040 MtrunA17_Chr1g0171491 33.161 193 125 1 189 381 58 246 2.59e-27 115
Msa1018040 MtrunA17_Chr1g0171491 35.025 197 119 4 190 381 82 274 4.24e-22 99.8
Msa1018040 MtrunA17_Chr8g0383331 39.726 146 88 0 193 338 5 150 1.41e-26 105
Msa1018040 MtrunA17_Chr8g0383331 38.889 126 77 0 236 361 2 127 5.18e-23 95.1
Msa1018040 MtrunA17_Chr5g0424301 35.928 167 107 0 189 355 66 232 1.31e-25 110
Msa1018040 MtrunA17_Chr5g0424301 40.625 128 76 0 240 367 71 198 1.44e-22 100
Msa1018040 MtrunA17_Chr5g0424301 36.449 107 68 0 262 368 70 176 7.04e-15 77.0
Msa1018040 MtrunA17_Chr3g0115111 33.503 197 130 1 193 388 58 254 1.75e-25 109
Msa1018040 MtrunA17_Chr8g0353121 30.846 201 136 1 189 389 50 247 2.19e-25 109
Msa1018040 MtrunA17_Chr8g0353121 28.649 185 123 1 184 359 59 243 4.45e-19 90.1
Msa1018040 MtrunA17_Chr3g0131001 36.628 172 109 0 193 364 56 227 9.21e-25 107
Msa1018040 MtrunA17_Chr3g0131001 35.938 128 82 0 193 320 102 229 7.56e-17 83.2
Msa1018040 MtrunA17_Chr3g0131001 39.062 128 78 0 240 367 57 184 3.63e-15 78.2
Msa1018040 MtrunA17_Chr8g0385241 33.816 207 111 4 184 367 108 311 1.09e-24 105
Msa1018040 MtrunA17_Chr8g0385241 31.967 244 107 6 181 367 47 288 4.39e-23 101
Msa1018040 MtrunA17_Chr8g0385241 33.702 181 110 1 196 366 14 194 1.57e-21 96.7
Msa1018040 MtrunA17_Chr8g0385241 34.946 186 115 3 172 354 164 346 6.17e-21 94.7
Msa1018040 MtrunA17_Chr8g0385241 36.250 160 92 2 214 363 9 168 2.35e-15 77.8
Msa1018040 MtrunA17_Chr3g0082501 29.032 248 167 3 193 440 65 303 1.15e-24 107
Msa1018040 MtrunA17_Chr3g0082501 36.567 134 85 0 235 368 61 194 2.48e-18 87.8
Msa1018040 MtrunA17_Chr3g0082501 34.409 93 61 0 189 281 153 245 3.81e-11 65.5
Msa1018040 MtrunA17_Chr7g0256301 31.737 167 114 0 189 355 68 234 3.49e-23 102
Msa1018040 MtrunA17_Chr7g0256301 36.923 130 82 0 238 367 71 200 1.17e-20 95.1
Msa1018040 MtrunA17_Chr7g0256301 31.034 145 77 1 193 337 118 239 9.54e-13 70.5
Msa1018040 MtrunA17_Chr8g0385201 36.025 161 102 1 193 352 31 191 6.16e-23 102
Msa1018040 MtrunA17_Chr8g0385201 40.870 115 68 0 253 367 46 160 1.07e-19 92.0
Msa1018040 MtrunA17_Chr8g0385201 36.111 108 68 1 262 368 31 138 5.48e-14 74.3
Msa1018040 MtrunA17_Chr8g0377211 41.176 119 70 0 231 349 35 153 8.49e-22 92.0
Msa1018040 MtrunA17_Chr8g0377211 34.400 125 82 0 243 367 24 148 1.14e-17 80.5
Msa1018040 MtrunA17_Chr1g0180261 32.258 186 123 1 193 378 52 234 4.83e-21 96.3
Msa1018040 MtrunA17_Chr1g0180261 32.298 161 109 0 190 350 72 232 9.83e-21 95.5
Msa1018040 MtrunA17_Chr1g0180261 33.871 124 59 1 182 305 133 233 1.61e-12 69.7
Msa1018040 MtrunA17_Chr2g0316611 32.984 191 105 1 193 360 106 296 2.97e-20 92.0
Msa1018040 MtrunA17_Chr2g0316611 35.393 178 113 2 189 365 33 209 2.78e-19 89.4
Msa1018040 MtrunA17_Chr2g0316611 34.104 173 114 0 193 365 175 347 2.87e-17 83.2
Msa1018040 MtrunA17_Chr2g0316611 32.941 170 112 1 177 346 46 213 7.02e-17 82.0
Msa1018040 MtrunA17_Chr2g0316631 32.000 175 119 0 193 367 106 280 9.07e-19 86.7
Msa1018040 MtrunA17_Chr2g0316631 34.270 178 115 2 189 365 33 209 2.83e-18 85.1
Msa1018040 MtrunA17_Chr2g0316631 32.738 168 113 0 193 360 129 296 1.47e-16 80.1
Msa1018040 MtrunA17_Chr2g0316631 33.077 130 87 0 193 322 175 304 2.68e-11 64.3
Msa1018040 MtrunA17_Chr6g0467061 32.461 191 106 1 193 360 89 279 9.34e-19 87.0
Msa1018040 MtrunA17_Chr6g0467061 35.795 176 111 2 188 362 15 189 2.04e-18 86.3
Msa1018040 MtrunA17_Chr6g0467061 33.155 187 125 0 179 365 144 330 3.28e-16 79.7
Msa1018040 MtrunA17_Chr6g0467061 33.083 133 89 0 234 366 15 147 7.88e-15 75.5
Msa1018040 MtrunA17_Chr8g0383551 29.245 212 135 5 220 424 105 308 1.18e-17 84.3
Msa1018040 MtrunA17_Chr8g0383551 32.000 150 70 4 170 293 126 269 2.35e-11 65.1
Msa1018040 MtrunA17_Chr8g0377221 25.339 221 127 3 190 372 3 223 3.80e-13 69.7
Msa1018040 MtrunA17_Chr8g0377221 31.447 159 99 2 188 345 70 219 3.57e-12 66.6
Msa1018040 MtrunA17_Chr5g0398021 35.644 101 65 0 193 293 14 114 3.95e-13 67.0
Msa1018040 MtrunA17_Chr1g0210831 30.597 134 93 0 234 367 609 742 5.92e-13 71.2
Msa1018040 MtrunA17_Chr1g0210831 32.000 125 85 0 218 342 616 740 4.35e-11 65.1
Msa1018040 MtrunA17_Chr5g0398011 35.780 109 70 0 240 348 37 145 4.44e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1018040 AT4G17080.1 55.796 509 153 12 1 441 1 505 7.13e-168 482
Msa1018040 AT2G35170.1 53.958 480 176 10 1 441 1 474 1.15e-144 422
Msa1018040 AT1G21920.1 59.574 329 105 7 118 439 103 410 6.01e-113 339
Msa1018040 AT1G21920.2 60.821 268 91 5 118 380 103 361 7.45e-107 322
Msa1018040 AT1G77660.1 55.287 331 127 4 118 443 104 418 2.29e-106 322
Msa1018040 AT2G41210.1 34.921 189 119 1 189 377 67 251 8.05e-29 120
Msa1018040 AT2G41210.1 35.106 94 61 0 188 281 158 251 4.64e-11 65.5
Msa1018040 AT1G21980.1 37.059 170 107 0 193 362 77 246 2.72e-28 118
Msa1018040 AT1G21980.1 41.406 128 75 0 240 367 78 205 3.43e-23 103
Msa1018040 AT3G56960.2 32.804 189 123 1 189 377 69 253 5.26e-28 117
Msa1018040 AT3G56960.1 32.804 189 123 1 189 377 69 253 5.26e-28 117
Msa1018040 AT1G60890.2 35.556 180 116 0 189 368 20 199 8.57e-28 117
Msa1018040 AT1G60890.2 37.342 158 99 0 193 350 47 204 6.75e-27 114
Msa1018040 AT1G60890.2 32.867 143 88 2 168 305 66 205 2.36e-14 75.9
Msa1018040 AT1G60890.1 35.556 180 116 0 189 368 8 187 8.61e-28 117
Msa1018040 AT1G60890.1 37.342 158 99 0 193 350 35 192 7.04e-27 114
Msa1018040 AT1G60890.1 32.867 143 88 2 168 305 54 193 2.10e-14 76.3
Msa1018040 AT1G10900.2 37.079 178 112 0 191 368 10 187 1.33e-27 116
Msa1018040 AT1G10900.2 36.875 160 101 0 191 350 33 192 2.94e-26 112
Msa1018040 AT1G10900.2 30.370 135 94 0 233 367 6 140 4.38e-15 78.2
Msa1018040 AT1G10900.2 33.566 143 87 2 168 305 54 193 5.89e-14 74.7
Msa1018040 AT1G10900.1 37.079 178 112 0 191 368 10 187 1.33e-27 116
Msa1018040 AT1G10900.1 36.875 160 101 0 191 350 33 192 2.94e-26 112
Msa1018040 AT1G10900.1 30.370 135 94 0 233 367 6 140 4.38e-15 78.2
Msa1018040 AT1G10900.1 33.566 143 87 2 168 305 54 193 5.89e-14 74.7
Msa1018040 AT1G10900.3 37.079 178 112 0 191 368 10 187 1.33e-27 116
Msa1018040 AT1G10900.3 36.875 160 101 0 191 350 33 192 2.94e-26 112
Msa1018040 AT1G10900.3 30.370 135 94 0 233 367 6 140 4.38e-15 78.2
Msa1018040 AT1G10900.3 33.566 143 87 2 168 305 54 193 5.89e-14 74.7
Msa1018040 AT1G77740.2 33.023 215 121 3 152 362 52 247 8.82e-26 111
Msa1018040 AT1G77740.2 40.625 128 76 0 240 367 79 206 1.09e-21 98.6
Msa1018040 AT1G77740.1 33.023 215 121 3 152 362 52 247 8.82e-26 111
Msa1018040 AT1G77740.1 40.625 128 76 0 240 367 79 206 1.09e-21 98.6
Msa1018040 AT3G07960.1 32.275 189 124 1 189 377 24 208 5.08e-25 108
Msa1018040 AT3G07960.2 32.275 189 124 1 189 377 24 208 7.24e-25 108
Msa1018040 AT3G07960.4 32.275 189 124 1 189 377 24 208 7.24e-25 108
Msa1018040 AT3G07960.3 32.275 189 124 1 189 377 24 208 7.38e-25 108
Msa1018040 AT2G26420.2 34.483 174 114 0 189 362 50 223 1.50e-24 107
Msa1018040 AT2G26420.2 38.281 128 79 0 240 367 55 182 8.95e-20 92.8
Msa1018040 AT2G26420.2 35.849 106 68 0 263 368 55 160 3.78e-12 68.9
Msa1018040 AT2G26420.3 34.483 174 114 0 189 362 50 223 1.50e-24 107
Msa1018040 AT2G26420.3 38.281 128 79 0 240 367 55 182 8.95e-20 92.8
Msa1018040 AT2G26420.3 35.849 106 68 0 263 368 55 160 3.78e-12 68.9
Msa1018040 AT2G26420.1 34.483 174 114 0 189 362 50 223 1.93e-24 107
Msa1018040 AT2G26420.1 38.281 128 79 0 240 367 55 182 1.05e-19 92.4
Msa1018040 AT2G26420.1 35.849 106 68 0 263 368 55 160 4.38e-12 68.9
Msa1018040 AT3G09920.3 31.844 179 122 0 190 368 51 229 9.45e-22 99.0
Msa1018040 AT3G09920.3 32.919 161 108 0 190 350 74 234 3.25e-21 97.4
Msa1018040 AT3G09920.3 25.869 259 163 4 183 425 115 360 1.79e-15 79.7
Msa1018040 AT3G09920.3 38.776 98 60 0 182 279 135 232 2.22e-13 72.8
Msa1018040 AT3G09920.3 34.259 108 71 0 263 370 55 162 2.79e-12 69.3
Msa1018040 AT3G09920.4 31.844 179 122 0 190 368 51 229 9.45e-22 99.0
Msa1018040 AT3G09920.4 32.919 161 108 0 190 350 74 234 3.25e-21 97.4
Msa1018040 AT3G09920.4 25.869 259 163 4 183 425 115 360 1.79e-15 79.7
Msa1018040 AT3G09920.4 38.776 98 60 0 182 279 135 232 2.22e-13 72.8
Msa1018040 AT3G09920.4 34.259 108 71 0 263 370 55 162 2.79e-12 69.3
Msa1018040 AT3G09920.2 31.844 179 122 0 190 368 51 229 9.45e-22 99.0
Msa1018040 AT3G09920.2 32.919 161 108 0 190 350 74 234 3.25e-21 97.4
Msa1018040 AT3G09920.2 25.869 259 163 4 183 425 115 360 1.79e-15 79.7
Msa1018040 AT3G09920.2 38.776 98 60 0 182 279 135 232 2.22e-13 72.8
Msa1018040 AT3G09920.2 34.259 108 71 0 263 370 55 162 2.79e-12 69.3
Msa1018040 AT3G09920.1 31.844 179 122 0 190 368 51 229 9.45e-22 99.0
Msa1018040 AT3G09920.1 32.919 161 108 0 190 350 74 234 3.25e-21 97.4
Msa1018040 AT3G09920.1 25.869 259 163 4 183 425 115 360 1.79e-15 79.7
Msa1018040 AT3G09920.1 38.776 98 60 0 182 279 135 232 2.22e-13 72.8
Msa1018040 AT3G09920.1 34.259 108 71 0 263 370 55 162 2.79e-12 69.3
Msa1018040 AT1G75010.1 33.333 105 70 0 261 365 602 706 7.05e-11 65.1

Find 202 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTTGGTCATTATCATTTC+AGG 0.156400 7_1:-37838808 Msa1018040:intron
GATATGTTGGAGAGTTTAAA+TGG 0.174453 7_1:-37838844 Msa1018040:CDS
CAGCTACTGTTGTATTATTA+TGG 0.183200 7_1:-37835547 Msa1018040:three_prime_UTR
ATGAATCTTAATTTGAAATT+AGG 0.183752 7_1:+37839760 None:intergenic
GTTGGAAATGAAATGGATTA+TGG 0.204600 7_1:+37839799 None:intergenic
AACGGCTTGGGTCGGGGTGC+TGG 0.212270 7_1:-37839168 Msa1018040:CDS
CTCTACCTTGCTCACATTAT+AGG 0.225329 7_1:+37835986 None:intergenic
CGGACAGGATGCATGGATTT+GGG 0.251705 7_1:-37837157 Msa1018040:CDS
TAATGTTACATAACAGGAAT+TGG 0.257542 7_1:+37835849 None:intergenic
GGGTGCTGGGTCCAGGTGTT+TGG 0.258370 7_1:-37839154 Msa1018040:CDS
TTTCATAAGGGGAAGTGTTC+AGG 0.266874 7_1:-37839106 Msa1018040:CDS
CAATCCGGTCATTGGCAAAA+TGG 0.287314 7_1:-37837038 Msa1018040:CDS
TTGAATGGCGGTTTGTTAGA+AGG 0.293010 7_1:+37839535 None:intergenic
GCGGACAGGATGCATGGATT+TGG 0.295803 7_1:-37837158 Msa1018040:CDS
GGGTCCAGGTGTTTGGGAAC+GGG 0.301613 7_1:-37839147 Msa1018040:CDS
CTGCCACGGTCCTTGTATAA+AGG 0.318068 7_1:-37835679 Msa1018040:three_prime_UTR
CCCAAGCCGTTTCTCTGACT+TGG 0.321660 7_1:+37839180 None:intergenic
GACCATTGCGACCTTCTCTT+TGG 0.330033 7_1:-37835742 Msa1018040:three_prime_UTR
GGTGCTGGGTCCAGGTGTTT+GGG 0.332506 7_1:-37839153 Msa1018040:CDS
TGTTGATAGTTGTGTTGAAT+TGG 0.334066 7_1:+37839631 None:intergenic
AGGGGCGTGGGAGGAGTTTA+CGG 0.340768 7_1:+37839897 None:intergenic
CGGTGGCGGCGGAGGCGGAG+AGG 0.349984 7_1:+37839479 None:intergenic
TTTACAAAATTGTAGTAAAA+GGG 0.354494 7_1:+37835610 None:intergenic
TGGGTCGGGGTGCTGGGTCC+AGG 0.356913 7_1:-37839161 Msa1018040:CDS
ACGGCTTGGGTCGGGGTGCT+GGG 0.364059 7_1:-37839167 Msa1018040:CDS
TATGAAGGGGATTGGATTGA+TGG 0.367229 7_1:-37839049 Msa1018040:CDS
TGGGAACGGGGACGTTTATG+AGG 0.368585 7_1:-37839134 Msa1018040:CDS
TTGGAAATGAAATGGATTAT+GGG 0.370086 7_1:+37839800 None:intergenic
AGTTAATAATGTTACATAAC+AGG 0.372521 7_1:+37835843 None:intergenic
TTGACACCAACAGGAGAAAC+AGG 0.378310 7_1:+37836978 None:intergenic
GGAGGAGGAATTGTGATTGT+TGG 0.378421 7_1:+37839781 None:intergenic
TGTGATTGTTGGAAATGAAA+TGG 0.379179 7_1:+37839792 None:intergenic
TTGCCTTCTTCCCTCATGCC+AGG 0.379310 7_1:+37837097 None:intergenic
GAGTTTACGGTAATGATGAT+TGG 0.392300 7_1:+37839910 None:intergenic
TCAGAGAAACGGCTTGGGTC+GGG 0.392642 7_1:-37839175 Msa1018040:CDS
GCAAAAGGCGGTGGCGGCGG+AGG 0.393606 7_1:+37839471 None:intergenic
TGTGTTGAATTGGTGGTGTT+GGG 0.397722 7_1:+37839641 None:intergenic
TATACGGGCGATGTTTATAC+TGG 0.398711 7_1:-37838926 Msa1018040:CDS
TGGATTGATGGAAGGTATGA+TGG 0.401616 7_1:-37839037 Msa1018040:CDS
AAAGGCGGTGGCGGCGGAGG+CGG 0.406088 7_1:+37839474 None:intergenic
TTGGAATGATTGACACCAAC+AGG 0.407683 7_1:+37836969 None:intergenic
ATATGTTGGAGAGTTTAAAT+GGG 0.415378 7_1:-37838843 Msa1018040:CDS
ACTGTTGTATTATTATGGTT+TGG 0.415578 7_1:-37835542 Msa1018040:three_prime_UTR
GACGGGAGATGATTTCTGTT+GGG 0.417751 7_1:+37839557 None:intergenic
GATGCAAAAGGCGGTGGCGG+CGG 0.418679 7_1:+37839468 None:intergenic
TGTGTGCTTGAGAAAGAATA+GGG 0.419158 7_1:+37839878 None:intergenic
TTGTGTTGAATTGGTGGTGT+TGG 0.419614 7_1:+37839640 None:intergenic
TGGTGGTGTTGGGTTGAAAT+CGG 0.421657 7_1:+37839651 None:intergenic
TTACCGAATCGAAGCGATAA+GGG 0.423125 7_1:+37839733 None:intergenic
AGTATGAGTGGGAGGTATGA+AGG 0.423912 7_1:-37839064 Msa1018040:CDS
TGGGTCCAGGTGTTTGGGAA+CGG 0.427306 7_1:-37839148 Msa1018040:CDS
GTGAAACCCAATCCGGTCAT+TGG 0.435711 7_1:-37837046 Msa1018040:CDS
GCCGTTTCTCTGACTTGGGT+CGG 0.436839 7_1:+37839185 None:intergenic
ACTTACCCTGTTTCTCCTGT+TGG 0.439074 7_1:-37836984 Msa1018040:CDS
ATTACAGCACGTTAACTTGA+AGG 0.445204 7_1:+37835468 None:intergenic
CAGAAAACGGGAAGAGGAGG+GGG 0.447250 7_1:+37839220 None:intergenic
ATTACCGAATCGAAGCGATA+AGG 0.447569 7_1:+37839732 None:intergenic
GAGGGAAGAAGGCAAGGGCT+TGG 0.447698 7_1:-37837089 Msa1018040:CDS
GACATGGGTTCGGTGTTTAT+AGG 0.447741 7_1:-37838952 Msa1018040:CDS
GATCCTATGGTCCAGAAAAC+GGG 0.449541 7_1:+37839208 None:intergenic
CCGTTTCTCTGACTTGGGTC+GGG 0.449859 7_1:+37839186 None:intergenic
TGCCACGGTCCTTGTATAAA+GGG 0.450605 7_1:-37835678 Msa1018040:three_prime_UTR
AATGTTACATAACAGGAATT+GGG 0.454010 7_1:+37835850 None:intergenic
GGAATGTATACATTTAGAAA+TGG 0.456543 7_1:-37837068 Msa1018040:CDS
CAGCCCTTATCGCTTCGATT+CGG 0.461066 7_1:-37839736 Msa1018040:five_prime_UTR
AATCTTAATTTGAAATTAGG+AGG 0.461711 7_1:+37839763 None:intergenic
TTTGAGATTGTCGAAGAGGA+GGG 0.462212 7_1:-37835796 Msa1018040:three_prime_UTR
GGATCCTATGGTCCAGAAAA+CGG 0.466555 7_1:+37839207 None:intergenic
GTTTGAGATTGTCGAAGAGG+AGG 0.470745 7_1:-37835797 Msa1018040:three_prime_UTR
CATAATAATACAACAGTAGC+TGG 0.475171 7_1:+37835548 None:intergenic
TTCATAAGGGGAAGTGTTCA+GGG 0.475265 7_1:-37839105 Msa1018040:CDS
TGGCGGTTTGTTAGAAGGAC+GGG 0.475546 7_1:+37839540 None:intergenic
GCAAATGGCCATCGATATGA+AGG 0.477506 7_1:-37837122 Msa1018040:CDS
TGTGATGCATCAGAAGAAAT+CGG 0.477652 7_1:-37839710 Msa1018040:exon
TGGGGTGTTAAACATGGTCT+TGG 0.481307 7_1:-37838824 Msa1018040:CDS
GAAGTTTGAGATTGTCGAAG+AGG 0.481795 7_1:-37835800 Msa1018040:three_prime_UTR
GGTGGCGGCGGAGGCGGAGA+GGG 0.484014 7_1:+37839480 None:intergenic
TGATAGTTGTGTTGAATTGG+TGG 0.485327 7_1:+37839634 None:intergenic
CAGAGAAACGGCTTGGGTCG+GGG 0.485424 7_1:-37839174 Msa1018040:CDS
GTATGAGTGGGAGGTATGAA+GGG 0.485904 7_1:-37839063 Msa1018040:CDS
GATGATGCAAAAGGCGGTGG+CGG 0.487194 7_1:+37839465 None:intergenic
TTGTGTGCTTGAGAAAGAAT+AGG 0.489056 7_1:+37839877 None:intergenic
AACGTGAAGCGTGGAGGTAA+AGG 0.489527 7_1:+37839389 None:intergenic
GCAAGGGGAAGTCGTTATAG+AGG 0.490670 7_1:-37838995 Msa1018040:CDS
TGACTTGGGTCGGGATCCTA+TGG 0.491592 7_1:+37839195 None:intergenic
AGGCGGAGAGGGTGAGATGA+TGG 0.492013 7_1:+37839491 None:intergenic
CATCATCATGTCAACAATGA+AGG 0.496231 7_1:-37835876 Msa1018040:CDS
GGTCCAGGTGTTTGGGAACG+GGG 0.496544 7_1:-37839146 Msa1018040:CDS
CCCAAGTCAGAGAAACGGCT+TGG 0.496625 7_1:-37839181 Msa1018040:CDS
TAAGTGGTGTTCTGTGTGCT+TGG 0.500013 7_1:+37837002 None:intergenic
AGCAGCTACTCTAGCTGCAT+TGG 0.500850 7_1:+37835923 None:intergenic
GTGGGAGGTATGAAGGGGAT+TGG 0.501247 7_1:-37839057 Msa1018040:CDS
GCGGATGATGCAAAAGGCGG+TGG 0.501661 7_1:+37839462 None:intergenic
GGTCCAATGGTCAGAGTCAT+GGG 0.501698 7_1:-37838898 Msa1018040:CDS
CTTAATTTGAAATTAGGAGG+AGG 0.503373 7_1:+37839766 None:intergenic
TGGTCCAATGGTCAGAGTCA+TGG 0.503456 7_1:-37838899 Msa1018040:CDS
GGACGGGAGATGATTTCTGT+TGG 0.506589 7_1:+37839556 None:intergenic
CCAAGTCAGAGAAACGGCTT+GGG 0.507033 7_1:-37839180 Msa1018040:CDS
GAGCCTGGCATGAGGGAAGA+AGG 0.511128 7_1:-37837100 Msa1018040:CDS
TGGCATGAGGGAAGAAGGCA+AGG 0.511156 7_1:-37837095 Msa1018040:CDS
GGTGTTCATACTTGTGAAGA+TGG 0.512847 7_1:-37838872 Msa1018040:CDS
TTATGCAAATTAAGATGAAG+AGG 0.517018 7_1:+37839277 None:intergenic
AACGGTGCTTCTTGAGGCGG+CGG 0.518353 7_1:+37839443 None:intergenic
AAGAAATCGGAGGTCCAAAT+CGG 0.520803 7_1:-37839697 Msa1018040:CDS
GAAGATGGGAGTAGATATGT+TGG 0.521162 7_1:-37838857 Msa1018040:CDS
ATGGGTATGGTGTGGAGACA+TGG 0.522302 7_1:-37839018 Msa1018040:CDS
TTAACGTGCTGTAATTGACT+TGG 0.523700 7_1:-37835460 Msa1018040:three_prime_UTR
AGATTGTCGAAGAGGAGGGT+TGG 0.525350 7_1:-37835792 Msa1018040:three_prime_UTR
AATTATATAGGTGTAAATGC+TGG 0.525635 7_1:-37835588 Msa1018040:three_prime_UTR
TTTATTATTATAGTATGAGT+GGG 0.526460 7_1:-37839075 Msa1018040:CDS
AAGGGGAAGTGTTCAGGGAG+TGG 0.526679 7_1:-37839100 Msa1018040:CDS
ATGGTCCAGAAAACGGGAAG+AGG 0.531106 7_1:+37839214 None:intergenic
CTATAATGTGAGCAAGGTAG+AGG 0.534154 7_1:-37835985 Msa1018040:CDS
GCCATCGATATGAAGGAGCC+TGG 0.534303 7_1:-37837115 Msa1018040:CDS
GTCCAGAAAACGGGAAGAGG+AGG 0.534451 7_1:+37839217 None:intergenic
CTGCACGGCAGTGAGTACTT+TGG 0.536167 7_1:+37836950 None:intergenic
ACACCCATGACTCTGACCAT+TGG 0.536241 7_1:+37838895 None:intergenic
GAGGCGGCGGATGATGCAAA+AGG 0.536439 7_1:+37839456 None:intergenic
AGAAATGGTGAAACCCAATC+CGG 0.536711 7_1:-37837053 Msa1018040:CDS
AACAGGAGAAACAGGGTAAG+TGG 0.537619 7_1:+37836986 None:intergenic
CTTGAGAAAGAATAGGGGCG+TGG 0.540367 7_1:+37839884 None:intergenic
GGAACGGGGACGTTTATGAG+GGG 0.541742 7_1:-37839132 Msa1018040:CDS
CCAGAAAACGGGAAGAGGAG+GGG 0.543598 7_1:+37839219 None:intergenic
GTCAGAGAAACGGCTTGGGT+CGG 0.543937 7_1:-37839176 Msa1018040:CDS
AGAGGAAATGAACGTAGAGA+AGG 0.544039 7_1:+37839295 None:intergenic
AAGGGGATTGGATTGATGGA+AGG 0.545299 7_1:-37839045 Msa1018040:CDS
ACGGGAGATGATTTCTGTTG+GGG 0.547109 7_1:+37839558 None:intergenic
CGTCCCCGTTCCCAAACACC+TGG 0.547258 7_1:+37839143 None:intergenic
AGGTGTAAATGCTGGTGTGC+AGG 0.548270 7_1:-37835580 Msa1018040:three_prime_UTR
GATGGAAGGTATGATGGGTA+TGG 0.548362 7_1:-37839031 Msa1018040:CDS
TAACGTGCTGTAATTGACTT+GGG 0.550411 7_1:-37835459 Msa1018040:three_prime_UTR
CCCGACCCAAGTCAGAGAAA+CGG 0.553289 7_1:-37839186 Msa1018040:CDS
GAAAGCCTATAATGTGAGCA+AGG 0.553781 7_1:-37835991 Msa1018040:CDS
GGGAACGGGGACGTTTATGA+GGG 0.554543 7_1:-37839133 Msa1018040:CDS
TGGAGGTAAAGGTAGAGAAG+AGG 0.555304 7_1:+37839400 None:intergenic
GTTTATTATTATAGTATGAG+TGG 0.555614 7_1:-37839076 Msa1018040:CDS
CAAAGTACTCACTGCCGTGC+AGG 0.556677 7_1:-37836949 Msa1018040:intron
GCCAGGCTCCTTCATATCGA+TGG 0.556856 7_1:+37837114 None:intergenic
TTACAAAATTGTAGTAAAAG+GGG 0.558832 7_1:+37835611 None:intergenic
TTCTGTTGGGGAGATGTCGA+TGG 0.558902 7_1:+37839570 None:intergenic
TGGTGTGGAGACATGGGCAA+GGG 0.559248 7_1:-37839011 Msa1018040:CDS
CAAGGATTGAGACATGGGTT+CGG 0.560275 7_1:-37838962 Msa1018040:CDS
GAACGGGGACGTTTATGAGG+GGG 0.562733 7_1:-37839131 Msa1018040:CDS
ATTCAAACCGCCGCAAAACA+CGG 0.564436 7_1:-37839518 Msa1018040:CDS
ATGGTGTGGAGACATGGGCA+AGG 0.570407 7_1:-37839012 Msa1018040:CDS
GAAAGTACATTTAAGAAACA+TGG 0.572295 7_1:+37839967 None:intergenic
TCGTGAATGAGACGACGAAG+AGG 0.575039 7_1:+37839246 None:intergenic
TCCAGAAAACGGGAAGAGGA+GGG 0.579196 7_1:+37839218 None:intergenic
GAACGGAACGGTGCTTCTTG+AGG 0.580795 7_1:+37839437 None:intergenic
ATGGCGGTTTGTTAGAAGGA+CGG 0.581943 7_1:+37839539 None:intergenic
GCGATGTTTATACTGGAGAA+TGG 0.582682 7_1:-37838919 Msa1018040:CDS
GGTGTGGAGACATGGGCAAG+GGG 0.583975 7_1:-37839010 Msa1018040:CDS
ACTCATCCTCCCTTTATACA+AGG 0.584985 7_1:+37835669 None:intergenic
TACATTTAAGAAACATGGGA+GGG 0.587774 7_1:+37839972 None:intergenic
AGGAAGAGAGATTAGAAGAA+CGG 0.590138 7_1:+37839420 None:intergenic
GGATTGATGGAAGGTATGAT+GGG 0.593042 7_1:-37839036 Msa1018040:CDS
ATTATTATAGTATGAGTGGG+AGG 0.595261 7_1:-37839072 Msa1018040:CDS
TTTAAATGGGGTGTTAAACA+TGG 0.596268 7_1:-37838830 Msa1018040:CDS
GGAGAGGGTGAGATGATGGA+AGG 0.596326 7_1:+37839495 None:intergenic
ATCGACAAGGATTGAGACAT+GGG 0.600839 7_1:-37838967 Msa1018040:CDS
AAAGTACATTTAAGAAACAT+GGG 0.602807 7_1:+37839968 None:intergenic
CAAGGGGAAGTCGTTATAGA+GGG 0.603062 7_1:-37838994 Msa1018040:CDS
TTGAGAAAGAATAGGGGCGT+GGG 0.603140 7_1:+37839885 None:intergenic
AGAAAGAATAGGGGCGTGGG+AGG 0.604301 7_1:+37839888 None:intergenic
AAAGCATAATGCCAAAGAGA+AGG 0.606453 7_1:+37835731 None:intergenic
TATGAGTGGGAGGTATGAAG+GGG 0.610885 7_1:-37839062 Msa1018040:CDS
ACATTTAAGAAACATGGGAG+GGG 0.611534 7_1:+37839973 None:intergenic
TGCCAAAGAGAAGGTCGCAA+TGG 0.612545 7_1:+37835740 None:intergenic
ATAATACAACAGTAGCTGGT+AGG 0.615114 7_1:+37835552 None:intergenic
TATACTGGAGAATGGTCCAA+TGG 0.615740 7_1:-37838911 Msa1018040:CDS
ATATGAAGGAGCCTGGCATG+AGG 0.616105 7_1:-37837108 Msa1018040:CDS
GTGTTCATACTTGTGAAGAT+GGG 0.621991 7_1:-37838871 Msa1018040:CDS
TATGTTGGAGAGTTTAAATG+GGG 0.623779 7_1:-37838842 Msa1018040:CDS
AATGGTCAGAGTCATGGGTG+TGG 0.624619 7_1:-37838893 Msa1018040:CDS
ACAGAGGTGTTGACGCTGAG+AGG 0.628131 7_1:+37839606 None:intergenic
TATGAAGGAGCCTGGCATGA+GGG 0.628567 7_1:-37837107 Msa1018040:CDS
GAAAGAAAGAACGTGAAGCG+TGG 0.634212 7_1:+37839380 None:intergenic
CGGAACGGTGCTTCTTGAGG+CGG 0.636259 7_1:+37839440 None:intergenic
TATCGACAAGGATTGAGACA+TGG 0.637583 7_1:-37838968 Msa1018040:CDS
CACGGTCCTTGTATAAAGGG+AGG 0.638572 7_1:-37835675 Msa1018040:three_prime_UTR
TGGGTATGGTGTGGAGACAT+GGG 0.644842 7_1:-37839017 Msa1018040:CDS
GGACAGGATGCATGGATTTG+GGG 0.647772 7_1:-37837156 Msa1018040:CDS
AAGGTATGATGGGTATGGTG+TGG 0.652282 7_1:-37839026 Msa1018040:CDS
GTACATTTAAGAAACATGGG+AGG 0.653304 7_1:+37839971 None:intergenic
CAAATCGGAAAAGAAAGCGT+AGG 0.654836 7_1:-37839682 Msa1018040:CDS
ATGTCGATGGAGTGATGACG+TGG 0.669848 7_1:+37839583 None:intergenic
ACACAAAGAATGTACCTGCA+CGG 0.669984 7_1:+37836935 None:intergenic
GATCTGTTATCTATCTGCCA+CGG 0.674008 7_1:-37835693 Msa1018040:three_prime_UTR
GGCATGAGGGAAGAAGGCAA+GGG 0.678137 7_1:-37837094 Msa1018040:CDS
AGAAAGAACGTGAAGCGTGG+AGG 0.679285 7_1:+37839383 None:intergenic
AGAAACGGAGACACATACGC+GGG 0.687462 7_1:-37837191 Msa1018040:CDS
CAGAAACGGAGACACATACG+CGG 0.695111 7_1:-37837192 Msa1018040:CDS
TGGAGTGATGACGTGGACAG+AGG 0.696682 7_1:+37839590 None:intergenic
GTGTGCTTGAGAAAGAATAG+GGG 0.697901 7_1:+37839879 None:intergenic
GCGGCGGATGATGCAAAAGG+CGG 0.701810 7_1:+37839459 None:intergenic
GAAACGGAGACACATACGCG+GGG 0.706021 7_1:-37837190 Msa1018040:CDS
TATAGAGGGCAATATCGACA+AGG 0.708209 7_1:-37838980 Msa1018040:CDS
CTCCCTTTATACAAGGACCG+TGG 0.714424 7_1:+37835676 None:intergenic
TGACACCAACAGGAGAAACA+GGG 0.715184 7_1:+37836979 None:intergenic
GAGAGATTAGAAGAACGGAA+CGG 0.719314 7_1:+37839425 None:intergenic
GATGCATCAGAAGAAATCGG+AGG 0.750982 7_1:-37839707 Msa1018040:CDS
AAACGGAGACACATACGCGG+GGG 0.752404 7_1:-37837189 Msa1018040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTATCTTTTTTTGAAA+TGG + chr7_1:37835599-37835618 None:intergenic 10.0%
!!! ACTTTTTATTCAAAAAATAT+CGG + chr7_1:37837412-37837431 None:intergenic 10.0%
!! ATTAATAATGAAAAATGAAA+GGG + chr7_1:37839225-37839244 None:intergenic 10.0%
!!! ACAATTTTGTAAAATTATAT+AGG - chr7_1:37839840-37839859 Msa1018040:five_prime_UTR 10.0%
!!! ATGAATCTTAATTTGAAATT+AGG + chr7_1:37835683-37835702 None:intergenic 15.0%
!! TTTATTATTATAGTATGAGT+GGG - chr7_1:37836365-37836384 Msa1018040:intron 15.0%
!!! ATTATTAGGGTTTTAAATAA+AGG - chr7_1:37836911-37836930 Msa1018040:intron 15.0%
!!! ATTCCAGTTTTTAAAATTTA+TGG - chr7_1:37837075-37837094 Msa1018040:CDS 15.0%
!! CATTAATAATGAAAAATGAA+AGG + chr7_1:37839226-37839245 None:intergenic 15.0%
!! TATTTATTTATTTCGCAAAT+AGG - chr7_1:37839407-37839426 Msa1018040:CDS 15.0%
!! TTTACAAAATTGTAGTAAAA+GGG + chr7_1:37839833-37839852 None:intergenic 15.0%
!!! TTTTACAAAATTGTAGTAAA+AGG + chr7_1:37839834-37839853 None:intergenic 15.0%
!! AAAGTACATTTAAGAAACAT+GGG + chr7_1:37835475-37835494 None:intergenic 20.0%
!!! AATCTTAATTTGAAATTAGG+AGG + chr7_1:37835680-37835699 None:intergenic 20.0%
!! GTTTATTATTATAGTATGAG+TGG - chr7_1:37836364-37836383 Msa1018040:intron 20.0%
!! TCAAATAACAATTGTGTTAA+AGG + chr7_1:37837186-37837205 None:intergenic 20.0%
!!! TAACATACACCATTTTATAT+GGG + chr7_1:37838011-37838030 None:intergenic 20.0%
!! AGAAGATTAATAGAAATGAA+AGG - chr7_1:37838055-37838074 Msa1018040:intron 20.0%
!! GAAGATTAATAGAAATGAAA+GGG - chr7_1:37838056-37838075 Msa1018040:intron 20.0%
!! AATGAAAGGGTTTAAATAAT+TGG - chr7_1:37838069-37838088 Msa1018040:intron 20.0%
!!! AAACAATCAAAATGAGTTTT+TGG - chr7_1:37838096-37838115 Msa1018040:intron 20.0%
!! TAACATTTAACAAGAACAAA+GGG + chr7_1:37838541-37838560 None:intergenic 20.0%
!! ATAACATTTAACAAGAACAA+AGG + chr7_1:37838542-37838561 None:intergenic 20.0%
!! TCAAGAAAAAAATATGCTTA+TGG + chr7_1:37838905-37838924 None:intergenic 20.0%
!! TTGTATTTATATCTAAGCTT+AGG - chr7_1:37838946-37838965 Msa1018040:CDS 20.0%
!! TGTATTTATATCTAAGCTTA+GGG - chr7_1:37838947-37838966 Msa1018040:CDS 20.0%
!! TTCAGATGTTATGTATAAAT+AGG - chr7_1:37839267-37839286 Msa1018040:CDS 20.0%
!! TTATTTGTAATAACTGTACT+CGG + chr7_1:37839353-37839372 None:intergenic 20.0%
!! AGTTAATAATGTTACATAAC+AGG + chr7_1:37839600-37839619 None:intergenic 20.0%
!! TTACAAAATTGTAGTAAAAG+GGG + chr7_1:37839832-37839851 None:intergenic 20.0%
!! GAAAGTACATTTAAGAAACA+TGG + chr7_1:37835476-37835495 None:intergenic 25.0%
!!! TTGGAAATGAAATGGATTAT+GGG + chr7_1:37835643-37835662 None:intergenic 25.0%
! TTATGCAAATTAAGATGAAG+AGG + chr7_1:37836166-37836185 None:intergenic 25.0%
! ATATGTTGGAGAGTTTAAAT+GGG - chr7_1:37836597-37836616 Msa1018040:intron 25.0%
! CAACACAAGAATTAAACAAA+GGG + chr7_1:37836680-37836699 None:intergenic 25.0%
! TTCATAGGTTGTGATTATTA+GGG - chr7_1:37836898-37836917 Msa1018040:intron 25.0%
!!! CAGCCATAAATTTTAAAAAC+TGG + chr7_1:37837081-37837100 None:intergenic 25.0%
!!! CAGTTTTTAAAATTTATGGC+TGG - chr7_1:37837079-37837098 Msa1018040:CDS 25.0%
! AAACAACAATATCACAATTC+AGG + chr7_1:37837211-37837230 None:intergenic 25.0%
!!! ATTGTGATATTGTTGTTTTG+AGG - chr7_1:37837213-37837232 Msa1018040:intron 25.0%
! GAAGAATATAACTACTGAAA+TGG - chr7_1:37837374-37837393 Msa1018040:intron 25.0%
!!! ATGACTTTTTTTCTCTCTTA+TGG - chr7_1:37837680-37837699 Msa1018040:intron 25.0%
!! CAAATCCTTTTAGTCAATAT+AGG - chr7_1:37837738-37837757 Msa1018040:intron 25.0%
!! CTAACATACACCATTTTATA+TGG + chr7_1:37838012-37838031 None:intergenic 25.0%
! ATAAAATGGTGTATGTTAGA+TGG - chr7_1:37838013-37838032 Msa1018040:intron 25.0%
!!! AGTTTTTGGTTTTGAAATAG+TGG - chr7_1:37838110-37838129 Msa1018040:intron 25.0%
! ATGAAAAACCCAACATATTA+AGG + chr7_1:37838204-37838223 None:intergenic 25.0%
! ATCTTATGCTTAATCAGAAA+CGG - chr7_1:37838234-37838253 Msa1018040:intron 25.0%
! GGAATGTATACATTTAGAAA+TGG - chr7_1:37838372-37838391 Msa1018040:intron 25.0%
!! TTTTTGTTCTATCTTTCTCT+AGG - chr7_1:37838699-37838718 Msa1018040:intron 25.0%
!!! AGCATATTTTTTTCTTGAAG+TGG - chr7_1:37838907-37838926 Msa1018040:CDS 25.0%
!!! GCATATTTTTTTCTTGAAGT+GGG - chr7_1:37838908-37838927 Msa1018040:CDS 25.0%
! ATTTAATAAGTGGGGTAATA+AGG + chr7_1:37839162-37839181 None:intergenic 25.0%
! GAAAGGGAATTAAGTTTATA+AGG + chr7_1:37839209-37839228 None:intergenic 25.0%
! ATAAACTATTCCAAACCTAA+TGG - chr7_1:37839313-37839332 Msa1018040:CDS 25.0%
! TAAACTATTCCAAACCTAAT+GGG - chr7_1:37839314-37839333 Msa1018040:CDS 25.0%
! AATGTTACATAACAGGAATT+GGG + chr7_1:37839593-37839612 None:intergenic 25.0%
! TAATGTTACATAACAGGAAT+TGG + chr7_1:37839594-37839613 None:intergenic 25.0%
! AATTATATAGGTGTAAATGC+TGG - chr7_1:37839852-37839871 Msa1018040:five_prime_UTR 25.0%
! ACTGTTGTATTATTATGGTT+TGG - chr7_1:37839898-37839917 Msa1018040:five_prime_UTR 25.0%
TACATTTAAGAAACATGGGA+GGG + chr7_1:37835471-37835490 None:intergenic 30.0%
AGAGACATGAAAAGCAAAAA+AGG + chr7_1:37835498-37835517 None:intergenic 30.0%
!! TTTTGCTTTTCATGTCTCTA+TGG - chr7_1:37835499-37835518 Msa1018040:three_prime_UTR 30.0%
!! GTTGGAAATGAAATGGATTA+TGG + chr7_1:37835644-37835663 None:intergenic 30.0%
TGTGATTGTTGGAAATGAAA+TGG + chr7_1:37835651-37835670 None:intergenic 30.0%
! CTTAATTTGAAATTAGGAGG+AGG + chr7_1:37835677-37835696 None:intergenic 30.0%
!! TGTTGATAGTTGTGTTGAAT+TGG + chr7_1:37835812-37835831 None:intergenic 30.0%
ATTATTATAGTATGAGTGGG+AGG - chr7_1:37836368-37836387 Msa1018040:intron 30.0%
!! CGGTGTTTATAGGTTTTATA+CGG - chr7_1:37836498-37836517 Msa1018040:intron 30.0%
!! GGTGTTTATAGGTTTTATAC+GGG - chr7_1:37836499-37836518 Msa1018040:intron 30.0%
GATATGTTGGAGAGTTTAAA+TGG - chr7_1:37836596-37836615 Msa1018040:intron 30.0%
TATGTTGGAGAGTTTAAATG+GGG - chr7_1:37836598-37836617 Msa1018040:intron 30.0%
! TTTAAATGGGGTGTTAAACA+TGG - chr7_1:37836610-37836629 Msa1018040:intron 30.0%
GCAACACAAGAATTAAACAA+AGG + chr7_1:37836681-37836700 None:intergenic 30.0%
TCTCAAATTATTATCCGTGT+CGG + chr7_1:37836776-37836795 None:intergenic 30.0%
CTTCATAGGTTGTGATTATT+AGG - chr7_1:37836897-37836916 Msa1018040:intron 30.0%
CATCAAAAACCATTATGTCA+CGG + chr7_1:37836956-37836975 None:intergenic 30.0%
CACACAGACACTTTAAATTT+AGG - chr7_1:37837015-37837034 Msa1018040:CDS 30.0%
CTTGATATCGTAGGAAATTA+CGG + chr7_1:37837155-37837174 None:intergenic 30.0%
!! CAGTTTTGTAGAACATTTGT+AGG - chr7_1:37837241-37837260 Msa1018040:intron 30.0%
!! TTGTAGGCTTTAGAGAAAAT+TGG - chr7_1:37837257-37837276 Msa1018040:intron 30.0%
TGGATTTGAATCTTCCAATA+TGG - chr7_1:37837281-37837300 Msa1018040:intron 30.0%
AACGCAAAAATCTACCATAT+TGG + chr7_1:37837298-37837317 None:intergenic 30.0%
GTTTATTAAGGATTGAGAGT+AGG - chr7_1:37837343-37837362 Msa1018040:intron 30.0%
GACAACTATATTATACCACT+AGG - chr7_1:37837528-37837547 Msa1018040:intron 30.0%
AAAGGATTTGAACAGACAAA+TGG + chr7_1:37837728-37837747 None:intergenic 30.0%
AAGAGAGCTTGTCAATTATA+TGG - chr7_1:37837784-37837803 Msa1018040:intron 30.0%
!! TCTCTCATTTAACTTTTCCA+TGG + chr7_1:37837843-37837862 None:intergenic 30.0%
GAAAGGGTTTAAATAATTGG+AGG - chr7_1:37838072-37838091 Msa1018040:intron 30.0%
!!! TTGGTTTTGAAATAGTGGTT+AGG - chr7_1:37838115-37838134 Msa1018040:intron 30.0%
ACATATTAAGGCAAAGAGAA+AGG + chr7_1:37838192-37838211 None:intergenic 30.0%
TTCTCTTTGCCTTAATATGT+TGG - chr7_1:37838192-37838211 Msa1018040:intron 30.0%
TCTCTTTGCCTTAATATGTT+GGG - chr7_1:37838193-37838212 Msa1018040:intron 30.0%
TACAGTGTCTTTGATATATC+AGG - chr7_1:37838625-37838644 Msa1018040:intron 30.0%
ACAGTGTCTTTGATATATCA+GGG - chr7_1:37838626-37838645 Msa1018040:intron 30.0%
TCGGATGAATTTGACAATAT+CGG - chr7_1:37838655-37838674 Msa1018040:intron 30.0%
!!! TGTTTTTGGCTATCTCTTAT+TGG - chr7_1:37838774-37838793 Msa1018040:intron 30.0%
!!! TAGCCCTTTATTTTAGTTTG+AGG - chr7_1:37838838-37838857 Msa1018040:CDS 30.0%
!!! AGCCCTTTATTTTAGTTTGA+GGG - chr7_1:37838839-37838858 Msa1018040:CDS 30.0%
CTCCCTCAAACTAAAATAAA+GGG + chr7_1:37838844-37838863 None:intergenic 30.0%
AATTAGCACAACATTGTAAG+AGG - chr7_1:37839011-37839030 Msa1018040:CDS 30.0%
! GACATGCTAATATTTTGTTG+AGG - chr7_1:37839114-37839133 Msa1018040:CDS 30.0%
! GCTAATATTTTGTTGAGGAT+TGG - chr7_1:37839119-37839138 Msa1018040:CDS 30.0%
TTAAGTTTATAAGGTCGACT+TGG + chr7_1:37839200-37839219 None:intergenic 30.0%
CATAATAATACAACAGTAGC+TGG + chr7_1:37839895-37839914 None:intergenic 30.0%
CAGCTACTGTTGTATTATTA+TGG - chr7_1:37839893-37839912 Msa1018040:five_prime_UTR 30.0%
ACATTTAAGAAACATGGGAG+GGG + chr7_1:37835470-37835489 None:intergenic 35.0%
GTACATTTAAGAAACATGGG+AGG + chr7_1:37835472-37835491 None:intergenic 35.0%
GAGTTTACGGTAATGATGAT+TGG + chr7_1:37835533-37835552 None:intergenic 35.0%
TGTGTGCTTGAGAAAGAATA+GGG + chr7_1:37835565-37835584 None:intergenic 35.0%
TTGTGTGCTTGAGAAAGAAT+AGG + chr7_1:37835566-37835585 None:intergenic 35.0%
TGTGATGCATCAGAAGAAAT+CGG - chr7_1:37835730-37835749 Msa1018040:three_prime_UTR 35.0%
TGATAGTTGTGTTGAATTGG+TGG + chr7_1:37835809-37835828 None:intergenic 35.0%
AGGAAGAGAGATTAGAAGAA+CGG + chr7_1:37836023-37836042 None:intergenic 35.0%
GTGTTCATACTTGTGAAGAT+GGG - chr7_1:37836569-37836588 Msa1018040:intron 35.0%
GTCTTGGTCATTATCATTTC+AGG - chr7_1:37836632-37836651 Msa1018040:intron 35.0%
TAATCACAACCTATGAAGCA+CGG + chr7_1:37836895-37836914 None:intergenic 35.0%
AAGGTATGTGTCCATGATTT+AGG - chr7_1:37836930-37836949 Msa1018040:intron 35.0%
! TTAAAGTGTCTGTGTGACAT+AGG + chr7_1:37837011-37837030 None:intergenic 35.0%
ACTTTAAATTTAGGCGTGTC+TGG - chr7_1:37837024-37837043 Msa1018040:CDS 35.0%
GTAGGAAATTACGGTCAAAT+GGG + chr7_1:37837146-37837165 None:intergenic 35.0%
CGTAATTTCCTACGATATCA+AGG - chr7_1:37837153-37837172 Msa1018040:CDS 35.0%
!! AGGCTTTAGAGAAAATTGGA+TGG - chr7_1:37837261-37837280 Msa1018040:intron 35.0%
TTAATAAACACAACCCACCA+TGG + chr7_1:37837332-37837351 None:intergenic 35.0%
!! ATGGTGGGTTGTGTTTATTA+AGG - chr7_1:37837331-37837350 Msa1018040:intron 35.0%
AAAAAGATCACATGCGTACT+AGG + chr7_1:37837439-37837458 None:intergenic 35.0%
! AGCAGCCTATATTGACTAAA+AGG + chr7_1:37837746-37837765 None:intergenic 35.0%
TTAGTCAATATAGGCTGCTT+AGG - chr7_1:37837747-37837766 Msa1018040:intron 35.0%
ATGGTTATTCACTTGCGAAA+AGG - chr7_1:37837803-37837822 Msa1018040:intron 35.0%
AACTTCTCTGACAAAATTCG+TGG + chr7_1:37837927-37837946 None:intergenic 35.0%
TGTAGCAGACCCATATAAAA+TGG - chr7_1:37837999-37838018 Msa1018040:intron 35.0%
GGTGTATGTTAGATGGAATT+AGG - chr7_1:37838020-37838039 Msa1018040:intron 35.0%
! GCGTTTATCAGTTCTGTTTT+TGG - chr7_1:37838760-37838779 Msa1018040:intron 35.0%
CCTCCCTCAAACTAAAATAA+AGG + chr7_1:37838845-37838864 None:intergenic 35.0%
!!! CCTTTATTTTAGTTTGAGGG+AGG - chr7_1:37838842-37838861 Msa1018040:CDS 35.0%
!!! ATTTTAGTTTGAGGGAGGAT+TGG - chr7_1:37838847-37838866 Msa1018040:CDS 35.0%
ATATCTAAGCTTAGGGTAAC+AGG - chr7_1:37838954-37838973 Msa1018040:CDS 35.0%
AATAAGTGGGGTAATAAGGA+AGG + chr7_1:37839158-37839177 None:intergenic 35.0%
CATCATCATGTCAACAATGA+AGG - chr7_1:37839564-37839583 Msa1018040:CDS 35.0%
AAAGCATAATGCCAAAGAGA+AGG + chr7_1:37839712-37839731 None:intergenic 35.0%
ATAATACAACAGTAGCTGGT+AGG + chr7_1:37839891-37839910 None:intergenic 35.0%
! ATTACAGCACGTTAACTTGA+AGG + chr7_1:37839975-37839994 None:intergenic 35.0%
TTAACGTGCTGTAATTGACT+TGG - chr7_1:37839980-37839999 Msa1018040:five_prime_UTR 35.0%
GTGTGCTTGAGAAAGAATAG+GGG + chr7_1:37835564-37835583 None:intergenic 40.0%
TTACCGAATCGAAGCGATAA+GGG + chr7_1:37835710-37835729 None:intergenic 40.0%
ATTACCGAATCGAAGCGATA+AGG + chr7_1:37835711-37835730 None:intergenic 40.0%
AAGAAATCGGAGGTCCAAAT+CGG - chr7_1:37835743-37835762 Msa1018040:three_prime_UTR 40.0%
! CTACGCTTTCTTTTCCGATT+TGG + chr7_1:37835760-37835779 None:intergenic 40.0%
! CAAATCGGAAAAGAAAGCGT+AGG - chr7_1:37835758-37835777 Msa1018040:three_prime_UTR 40.0%
!! TGTGTTGAATTGGTGGTGTT+GGG + chr7_1:37835802-37835821 None:intergenic 40.0%
!! TTGTGTTGAATTGGTGGTGT+TGG + chr7_1:37835803-37835822 None:intergenic 40.0%
!! TTGAATGGCGGTTTGTTAGA+AGG + chr7_1:37835908-37835927 None:intergenic 40.0%
GAGAGATTAGAAGAACGGAA+CGG + chr7_1:37836018-37836037 None:intergenic 40.0%
!!! CACCGCTTTTGCTTTTTCAA+CGG - chr7_1:37836093-37836112 Msa1018040:intron 40.0%
AGCCGTTGAAAAAGCAAAAG+CGG + chr7_1:37836098-37836117 None:intergenic 40.0%
AGAGGAAATGAACGTAGAGA+AGG + chr7_1:37836148-37836167 None:intergenic 40.0%
TTATGAGGGGGAGTTTCATA+AGG - chr7_1:37836321-37836340 Msa1018040:intron 40.0%
TATGAGGGGGAGTTTCATAA+GGG - chr7_1:37836322-37836341 Msa1018040:intron 40.0%
!! TTTCATAAGGGGAAGTGTTC+AGG - chr7_1:37836334-37836353 Msa1018040:intron 40.0%
!! TTCATAAGGGGAAGTGTTCA+GGG - chr7_1:37836335-37836354 Msa1018040:intron 40.0%
TATGAAGGGGATTGGATTGA+TGG - chr7_1:37836391-37836410 Msa1018040:intron 40.0%
! TGGATTGATGGAAGGTATGA+TGG - chr7_1:37836403-37836422 Msa1018040:intron 40.0%
! GGATTGATGGAAGGTATGAT+GGG - chr7_1:37836404-37836423 Msa1018040:intron 40.0%
TATAGAGGGCAATATCGACA+AGG - chr7_1:37836460-37836479 Msa1018040:intron 40.0%
TATCGACAAGGATTGAGACA+TGG - chr7_1:37836472-37836491 Msa1018040:intron 40.0%
ATCGACAAGGATTGAGACAT+GGG - chr7_1:37836473-37836492 Msa1018040:intron 40.0%
TATACGGGCGATGTTTATAC+TGG - chr7_1:37836514-37836533 Msa1018040:intron 40.0%
GCGATGTTTATACTGGAGAA+TGG - chr7_1:37836521-37836540 Msa1018040:intron 40.0%
TATACTGGAGAATGGTCCAA+TGG - chr7_1:37836529-37836548 Msa1018040:intron 40.0%
GGTGTTCATACTTGTGAAGA+TGG - chr7_1:37836568-37836587 Msa1018040:intron 40.0%
GAAGATGGGAGTAGATATGT+TGG - chr7_1:37836583-37836602 Msa1018040:intron 40.0%
TGATCAATGAAGCACAGACA+CGG - chr7_1:37836721-37836740 Msa1018040:intron 40.0%
! TCATAAGTGTCGTATCGTGT+CGG - chr7_1:37836817-37836836 Msa1018040:intron 40.0%
TTATGTCACGGCCTAAATCA+TGG + chr7_1:37836944-37836963 None:intergenic 40.0%
TGATTTAGGCCGTGACATAA+TGG - chr7_1:37836944-37836963 Msa1018040:intron 40.0%
TGATGTTGTTGAAACCGCTA+TGG - chr7_1:37836971-37836990 Msa1018040:CDS 40.0%
CGTAGGAAATTACGGTCAAA+TGG + chr7_1:37837147-37837166 None:intergenic 40.0%
GTTGTGATCCTTGATATCGT+AGG + chr7_1:37837164-37837183 None:intergenic 40.0%
TTGATTGTAGAAGCCATGGT+GGG - chr7_1:37837316-37837335 Msa1018040:intron 40.0%
! ATTGTATGACTTGTGCCTAG+TGG + chr7_1:37837546-37837565 None:intergenic 40.0%
! AAAGCAATCCAAGATGGACT+GGG + chr7_1:37837631-37837650 None:intergenic 40.0%
AGACACAAAGCAATCCAAGA+TGG + chr7_1:37837637-37837656 None:intergenic 40.0%
AGGTCTTTCTTTGTTCTCCA+TGG - chr7_1:37837823-37837842 Msa1018040:intron 40.0%
TTGAAATAGTGGTTAGGTCG+TGG - chr7_1:37838121-37838140 Msa1018040:intron 40.0%
TGAAATAGTGGTTAGGTCGT+GGG - chr7_1:37838122-37838141 Msa1018040:intron 40.0%
! GGGGTATATCGTTTTGCAAA+TGG - chr7_1:37838303-37838322 Msa1018040:intron 40.0%
AGAAATGGTGAAACCCAATC+CGG - chr7_1:37838387-37838406 Msa1018040:intron 40.0%
! ATTTTGCCAATGACCGGATT+GGG + chr7_1:37838403-37838422 None:intergenic 40.0%
TTGGAATGATTGACACCAAC+AGG + chr7_1:37838474-37838493 None:intergenic 40.0%
ACACAAAGAATGTACCTGCA+CGG + chr7_1:37838508-37838527 None:intergenic 40.0%
CAAAGACACTGTAGTCTAAG+AGG + chr7_1:37838618-37838637 None:intergenic 40.0%
! TGATATATCAGGGTCGACTT+CGG - chr7_1:37838636-37838655 Msa1018040:intron 40.0%
! TAGGGTAACAGGCTCAATTT+TGG - chr7_1:37838965-37838984 Msa1018040:CDS 40.0%
! CTAACTGTCTGCAGTTTGTT+TGG + chr7_1:37839044-37839063 None:intergenic 40.0%
GGTGAGGGATTTAATAAGTG+GGG + chr7_1:37839170-37839189 None:intergenic 40.0%
GGGTGAGGGATTTAATAAGT+GGG + chr7_1:37839171-37839190 None:intergenic 40.0%
AGGGTGAGGGATTTAATAAG+TGG + chr7_1:37839172-37839191 None:intergenic 40.0%
!! AGTTTATAAGGTCGACTTGG+TGG + chr7_1:37839197-37839216 None:intergenic 40.0%
GAAAGCCTATAATGTGAGCA+AGG - chr7_1:37839449-37839468 Msa1018040:CDS 40.0%
CTCTACCTTGCTCACATTAT+AGG + chr7_1:37839457-37839476 None:intergenic 40.0%
CTATAATGTGAGCAAGGTAG+AGG - chr7_1:37839455-37839474 Msa1018040:CDS 40.0%
! GAAGTTTGAGATTGTCGAAG+AGG - chr7_1:37839640-37839659 Msa1018040:CDS 40.0%
! TTTGAGATTGTCGAAGAGGA+GGG - chr7_1:37839644-37839663 Msa1018040:CDS 40.0%
GATCTGTTATCTATCTGCCA+CGG - chr7_1:37839747-37839766 Msa1018040:five_prime_UTR 40.0%
ACTCATCCTCCCTTTATACA+AGG + chr7_1:37839774-37839793 None:intergenic 40.0%
! TTGAGAAAGAATAGGGGCGT+GGG + chr7_1:37835558-37835577 None:intergenic 45.0%
GGAGGAGGAATTGTGATTGT+TGG + chr7_1:37835662-37835681 None:intergenic 45.0%
GATGCATCAGAAGAAATCGG+AGG - chr7_1:37835733-37835752 Msa1018040:three_prime_UTR 45.0%
!! TGGTGGTGTTGGGTTGAAAT+CGG + chr7_1:37835792-37835811 None:intergenic 45.0%
ACGGGAGATGATTTCTGTTG+GGG + chr7_1:37835885-37835904 None:intergenic 45.0%
GACGGGAGATGATTTCTGTT+GGG + chr7_1:37835886-37835905 None:intergenic 45.0%
!! ATGGCGGTTTGTTAGAAGGA+CGG + chr7_1:37835904-37835923 None:intergenic 45.0%
ATTCAAACCGCCGCAAAACA+CGG - chr7_1:37835922-37835941 Msa1018040:CDS 45.0%
TGGAGGTAAAGGTAGAGAAG+AGG + chr7_1:37836043-37836062 None:intergenic 45.0%
GAAAGAAAGAACGTGAAGCG+TGG + chr7_1:37836063-37836082 None:intergenic 45.0%
GATCCTATGGTCCAGAAAAC+GGG + chr7_1:37836235-37836254 None:intergenic 45.0%
GGATCCTATGGTCCAGAAAA+CGG + chr7_1:37836236-37836255 None:intergenic 45.0%
ATGAGGGGGAGTTTCATAAG+GGG - chr7_1:37836323-37836342 Msa1018040:intron 45.0%
! AGTATGAGTGGGAGGTATGA+AGG - chr7_1:37836376-37836395 Msa1018040:intron 45.0%
! GTATGAGTGGGAGGTATGAA+GGG - chr7_1:37836377-37836396 Msa1018040:intron 45.0%
! TATGAGTGGGAGGTATGAAG+GGG - chr7_1:37836378-37836397 Msa1018040:intron 45.0%
AAGGGGATTGGATTGATGGA+AGG - chr7_1:37836395-37836414 Msa1018040:intron 45.0%
!! GATGGAAGGTATGATGGGTA+TGG - chr7_1:37836409-37836428 Msa1018040:intron 45.0%
!! AAGGTATGATGGGTATGGTG+TGG - chr7_1:37836414-37836433 Msa1018040:intron 45.0%
CAAGGGGAAGTCGTTATAGA+GGG - chr7_1:37836446-37836465 Msa1018040:intron 45.0%
CAAGGATTGAGACATGGGTT+CGG - chr7_1:37836478-37836497 Msa1018040:intron 45.0%
!! GACATGGGTTCGGTGTTTAT+AGG - chr7_1:37836488-37836507 Msa1018040:intron 45.0%
! TGGGGTGTTAAACATGGTCT+TGG - chr7_1:37836616-37836635 Msa1018040:intron 45.0%
CTTCAATCGCAACACCATAG+CGG + chr7_1:37836988-37837007 None:intergenic 45.0%
!! TGCGTTGATTGTAGAAGCCA+TGG - chr7_1:37837312-37837331 Msa1018040:intron 45.0%
GTTGATTGTAGAAGCCATGG+TGG - chr7_1:37837315-37837334 Msa1018040:intron 45.0%
CTACTTATCCCAGTCCATCT+TGG - chr7_1:37837620-37837639 Msa1018040:intron 45.0%
CAAAGCAATCCAAGATGGAC+TGG + chr7_1:37837632-37837651 None:intergenic 45.0%
GCAAATGGCCATCGATATGA+AGG - chr7_1:37838318-37838337 Msa1018040:intron 45.0%
! CATTTTGCCAATGACCGGAT+TGG + chr7_1:37838404-37838423 None:intergenic 45.0%
CAATCCGGTCATTGGCAAAA+TGG - chr7_1:37838402-37838421 Msa1018040:intron 45.0%
! CACTCCATTTTGCCAATGAC+CGG + chr7_1:37838409-37838428 None:intergenic 45.0%
TAAGTGGTGTTCTGTGTGCT+TGG + chr7_1:37838441-37838460 None:intergenic 45.0%
AACAGGAGAAACAGGGTAAG+TGG + chr7_1:37838457-37838476 None:intergenic 45.0%
! ACTTACCCTGTTTCTCCTGT+TGG - chr7_1:37838456-37838475 Msa1018040:intron 45.0%
TGACACCAACAGGAGAAACA+GGG + chr7_1:37838464-37838483 None:intergenic 45.0%
TTGACACCAACAGGAGAAAC+AGG + chr7_1:37838465-37838484 None:intergenic 45.0%
TGAAGTGGGTCTTAGCTAAC+AGG - chr7_1:37838922-37838941 Msa1018040:CDS 45.0%
!! TAAGGTCGACTTGGTGGTTA+GGG + chr7_1:37839191-37839210 None:intergenic 45.0%
!! ATAAGGTCGACTTGGTGGTT+AGG + chr7_1:37839192-37839211 None:intergenic 45.0%
TCGATCAGACCCATTAGGTT+TGG + chr7_1:37839326-37839345 None:intergenic 45.0%
! ACCTAATGGGTCTGATCGAT+AGG - chr7_1:37839327-37839346 Msa1018040:CDS 45.0%
! GTTTGAGATTGTCGAAGAGG+AGG - chr7_1:37839643-37839662 Msa1018040:CDS 45.0%
TGCCACGGTCCTTGTATAAA+GGG - chr7_1:37839762-37839781 Msa1018040:five_prime_UTR 45.0%
CTTGAGAAAGAATAGGGGCG+TGG + chr7_1:37835559-37835578 None:intergenic 50.0%
CAGCCCTTATCGCTTCGATT+CGG - chr7_1:37835704-37835723 Msa1018040:three_prime_UTR 50.0%
! ATGTCGATGGAGTGATGACG+TGG + chr7_1:37835860-37835879 None:intergenic 50.0%
TTCTGTTGGGGAGATGTCGA+TGG + chr7_1:37835873-37835892 None:intergenic 50.0%
GGACGGGAGATGATTTCTGT+TGG + chr7_1:37835887-37835906 None:intergenic 50.0%
!! TGGCGGTTTGTTAGAAGGAC+GGG + chr7_1:37835903-37835922 None:intergenic 50.0%
! TTTTGCGGCGGTTTGAATGG+CGG + chr7_1:37835920-37835939 None:intergenic 50.0%
! GTGTTTTGCGGCGGTTTGAA+TGG + chr7_1:37835923-37835942 None:intergenic 50.0%
! TGATGGAAGGCCGTGTTTTG+CGG + chr7_1:37835935-37835954 None:intergenic 50.0%
AACGTGAAGCGTGGAGGTAA+AGG + chr7_1:37836054-37836073 None:intergenic 50.0%
AGAAAGAACGTGAAGCGTGG+AGG + chr7_1:37836060-37836079 None:intergenic 50.0%
TCGTGAATGAGACGACGAAG+AGG + chr7_1:37836197-37836216 None:intergenic 50.0%
TCCAGAAAACGGGAAGAGGA+GGG + chr7_1:37836225-37836244 None:intergenic 50.0%
ATGGTCCAGAAAACGGGAAG+AGG + chr7_1:37836229-37836248 None:intergenic 50.0%
! CTTCCCGTTTTCTGGACCAT+AGG - chr7_1:37836229-37836248 Msa1018040:intron 50.0%
CCAAGCCGTTTCTCTGACTT+GGG + chr7_1:37836262-37836281 None:intergenic 50.0%
CCAAGTCAGAGAAACGGCTT+GGG - chr7_1:37836260-37836279 Msa1018040:intron 50.0%
ATGGGTATGGTGTGGAGACA+TGG - chr7_1:37836422-37836441 Msa1018040:intron 50.0%
TGGGTATGGTGTGGAGACAT+GGG - chr7_1:37836423-37836442 Msa1018040:intron 50.0%
GCAAGGGGAAGTCGTTATAG+AGG - chr7_1:37836445-37836464 Msa1018040:intron 50.0%
TGGTCCAATGGTCAGAGTCA+TGG - chr7_1:37836541-37836560 Msa1018040:intron 50.0%
GGTCCAATGGTCAGAGTCAT+GGG - chr7_1:37836542-37836561 Msa1018040:intron 50.0%
ACACCCATGACTCTGACCAT+TGG + chr7_1:37836548-37836567 None:intergenic 50.0%
AATGGTCAGAGTCATGGGTG+TGG - chr7_1:37836547-37836566 Msa1018040:intron 50.0%
! TATTATCCGTGTCGGCGTGT+CGG + chr7_1:37836768-37836787 None:intergenic 50.0%
TGTCAATGCCGTGTCTGTTG+TGG - chr7_1:37837110-37837129 Msa1018040:CDS 50.0%
TAGTGGTTAGGTCGTGGGAT+CGG - chr7_1:37838127-37838146 Msa1018040:intron 50.0%
CAGAAACGGAGACACATACG+CGG - chr7_1:37838248-37838267 Msa1018040:intron 50.0%
AGAAACGGAGACACATACGC+GGG - chr7_1:37838249-37838268 Msa1018040:intron 50.0%
CGGACAGGATGCATGGATTT+GGG - chr7_1:37838283-37838302 Msa1018040:intron 50.0%
GGACAGGATGCATGGATTTG+GGG - chr7_1:37838284-37838303 Msa1018040:intron 50.0%
ATATGAAGGAGCCTGGCATG+AGG - chr7_1:37838332-37838351 Msa1018040:intron 50.0%
TATGAAGGAGCCTGGCATGA+GGG - chr7_1:37838333-37838352 Msa1018040:intron 50.0%
GTGAAACCCAATCCGGTCAT+TGG - chr7_1:37838394-37838413 Msa1018040:intron 50.0%
!! GTTTGAGGGAGGATTGGTTG+TGG - chr7_1:37838853-37838872 Msa1018040:CDS 50.0%
GCCTATCGATCAGACCCATT+AGG + chr7_1:37839331-37839350 None:intergenic 50.0%
AGCAGCTACTCTAGCTGCAT+TGG + chr7_1:37839520-37839539 None:intergenic 50.0%
AGATTGTCGAAGAGGAGGGT+TGG - chr7_1:37839648-37839667 Msa1018040:CDS 50.0%
GACCATTGCGACCTTCTCTT+TGG - chr7_1:37839698-37839717 Msa1018040:CDS 50.0%
TGCCAAAGAGAAGGTCGCAA+TGG + chr7_1:37839703-37839722 None:intergenic 50.0%
CTGCCACGGTCCTTGTATAA+AGG - chr7_1:37839761-37839780 Msa1018040:five_prime_UTR 50.0%
CTCCCTTTATACAAGGACCG+TGG + chr7_1:37839767-37839786 None:intergenic 50.0%
CACGGTCCTTGTATAAAGGG+AGG - chr7_1:37839765-37839784 Msa1018040:five_prime_UTR 50.0%
AGGTGTAAATGCTGGTGTGC+AGG - chr7_1:37839860-37839879 Msa1018040:five_prime_UTR 50.0%
! AGAAAGAATAGGGGCGTGGG+AGG + chr7_1:37835555-37835574 None:intergenic 55.0%
!! ACAGAGGTGTTGACGCTGAG+AGG + chr7_1:37835837-37835856 None:intergenic 55.0%
! TGGAGTGATGACGTGGACAG+AGG + chr7_1:37835853-37835872 None:intergenic 55.0%
!! GGAGAGGGTGAGATGATGGA+AGG + chr7_1:37835948-37835967 None:intergenic 55.0%
GATGATGCAAAAGGCGGTGG+CGG + chr7_1:37835978-37835997 None:intergenic 55.0%
GAACGGAACGGTGCTTCTTG+AGG + chr7_1:37836006-37836025 None:intergenic 55.0%
CAGAAAACGGGAAGAGGAGG+GGG + chr7_1:37836223-37836242 None:intergenic 55.0%
CCAGAAAACGGGAAGAGGAG+GGG + chr7_1:37836224-37836243 None:intergenic 55.0%
GTCCAGAAAACGGGAAGAGG+AGG + chr7_1:37836226-37836245 None:intergenic 55.0%
! TGACTTGGGTCGGGATCCTA+TGG + chr7_1:37836248-37836267 None:intergenic 55.0%
!! CCGTTTCTCTGACTTGGGTC+GGG + chr7_1:37836257-37836276 None:intergenic 55.0%
CCCGACCCAAGTCAGAGAAA+CGG - chr7_1:37836254-37836273 Msa1018040:intron 55.0%
!! GCCGTTTCTCTGACTTGGGT+CGG + chr7_1:37836258-37836277 None:intergenic 55.0%
CCCAAGTCAGAGAAACGGCT+TGG - chr7_1:37836259-37836278 Msa1018040:intron 55.0%
CCCAAGCCGTTTCTCTGACT+TGG + chr7_1:37836263-37836282 None:intergenic 55.0%
! GTCAGAGAAACGGCTTGGGT+CGG - chr7_1:37836264-37836283 Msa1018040:intron 55.0%
! TCAGAGAAACGGCTTGGGTC+GGG - chr7_1:37836265-37836284 Msa1018040:intron 55.0%
TGGGTCCAGGTGTTTGGGAA+CGG - chr7_1:37836292-37836311 Msa1018040:intron 55.0%
TGGGAACGGGGACGTTTATG+AGG - chr7_1:37836306-37836325 Msa1018040:intron 55.0%
GGGAACGGGGACGTTTATGA+GGG - chr7_1:37836307-37836326 Msa1018040:intron 55.0%
GGAACGGGGACGTTTATGAG+GGG - chr7_1:37836308-37836327 Msa1018040:intron 55.0%
GAACGGGGACGTTTATGAGG+GGG - chr7_1:37836309-37836328 Msa1018040:intron 55.0%
!! AAGGGGAAGTGTTCAGGGAG+TGG - chr7_1:37836340-37836359 Msa1018040:intron 55.0%
! GTGGGAGGTATGAAGGGGAT+TGG - chr7_1:37836383-37836402 Msa1018040:intron 55.0%
ATGGTGTGGAGACATGGGCA+AGG - chr7_1:37836428-37836447 Msa1018040:intron 55.0%
TGGTGTGGAGACATGGGCAA+GGG - chr7_1:37836429-37836448 Msa1018040:intron 55.0%
TGAAGCACAGACACGGACAC+CGG - chr7_1:37836728-37836747 Msa1018040:intron 55.0%
! GTGTCGTATCGTGTCGGTGT+CGG - chr7_1:37836823-37836842 Msa1018040:intron 55.0%
TATGAAGCACGGACGCTCCT+CGG + chr7_1:37836884-37836903 None:intergenic 55.0%
CGATGCAGCCACAACAGACA+CGG + chr7_1:37837121-37837140 None:intergenic 55.0%
GAAACGGAGACACATACGCG+GGG - chr7_1:37838250-37838269 Msa1018040:intron 55.0%
AAACGGAGACACATACGCGG+GGG - chr7_1:37838251-37838270 Msa1018040:intron 55.0%
ATACGCGGGGGAATACTTCG+CGG - chr7_1:37838263-37838282 Msa1018040:intron 55.0%
TACTTCGCGGACAGGATGCA+TGG - chr7_1:37838276-37838295 Msa1018040:intron 55.0%
GCGGACAGGATGCATGGATT+TGG - chr7_1:37838282-37838301 Msa1018040:intron 55.0%
GCCATCGATATGAAGGAGCC+TGG - chr7_1:37838325-37838344 Msa1018040:intron 55.0%
GCCAGGCTCCTTCATATCGA+TGG + chr7_1:37838329-37838348 None:intergenic 55.0%
TTGCCTTCTTCCCTCATGCC+AGG + chr7_1:37838346-37838365 None:intergenic 55.0%
TGGCATGAGGGAAGAAGGCA+AGG - chr7_1:37838345-37838364 Msa1018040:intron 55.0%
GGCATGAGGGAAGAAGGCAA+GGG - chr7_1:37838346-37838365 Msa1018040:intron 55.0%
CTGCACGGCAGTGAGTACTT+TGG + chr7_1:37838493-37838512 None:intergenic 55.0%
! CAAAGTACTCACTGCCGTGC+AGG - chr7_1:37838491-37838510 Msa1018040:intron 55.0%
!! CGACTTGGTGGTTAGGGTGA+GGG + chr7_1:37839185-37839204 None:intergenic 55.0%
!! TCGACTTGGTGGTTAGGGTG+AGG + chr7_1:37839186-37839205 None:intergenic 55.0%
! AGGGGCGTGGGAGGAGTTTA+CGG + chr7_1:37835546-37835565 None:intergenic 60.0%
! TGGAAGGCCGTGTTTTGCGG+CGG + chr7_1:37835932-37835951 None:intergenic 60.0%
AGGCGGAGAGGGTGAGATGA+TGG + chr7_1:37835952-37835971 None:intergenic 60.0%
GCGGATGATGCAAAAGGCGG+TGG + chr7_1:37835981-37836000 None:intergenic 60.0%
GCGGCGGATGATGCAAAAGG+CGG + chr7_1:37835984-37836003 None:intergenic 60.0%
GAGGCGGCGGATGATGCAAA+AGG + chr7_1:37835987-37836006 None:intergenic 60.0%
AACGGTGCTTCTTGAGGCGG+CGG + chr7_1:37836000-37836019 None:intergenic 60.0%
CGGAACGGTGCTTCTTGAGG+CGG + chr7_1:37836003-37836022 None:intergenic 60.0%
! CCCCTCCTCTTCCCGTTTTC+TGG - chr7_1:37836221-37836240 Msa1018040:intron 60.0%
! CAGAGAAACGGCTTGGGTCG+GGG - chr7_1:37836266-37836285 Msa1018040:intron 60.0%
! GGTGCTGGGTCCAGGTGTTT+GGG - chr7_1:37836287-37836306 Msa1018040:intron 60.0%
GGGTCCAGGTGTTTGGGAAC+GGG - chr7_1:37836293-37836312 Msa1018040:intron 60.0%
GGTCCAGGTGTTTGGGAACG+GGG - chr7_1:37836294-37836313 Msa1018040:intron 60.0%
GGTGTGGAGACATGGGCAAG+GGG - chr7_1:37836430-37836449 Msa1018040:intron 60.0%
GGATTAGGCGTGTCCCGTGT+CGG + chr7_1:37836863-37836882 None:intergenic 60.0%
!! GAGGAGCGTCCGTGCTTCAT+AGG - chr7_1:37836883-37836902 Msa1018040:intron 60.0%
GAGCCTGGCATGAGGGAAGA+AGG - chr7_1:37838340-37838359 Msa1018040:intron 60.0%
GAGGGAAGAAGGCAAGGGCT+TGG - chr7_1:37838351-37838370 Msa1018040:intron 60.0%
! GATGCAAAAGGCGGTGGCGG+CGG + chr7_1:37835975-37835994 None:intergenic 65.0%
!! GGGTGCTGGGTCCAGGTGTT+TGG - chr7_1:37836286-37836305 Msa1018040:intron 65.0%
CGTCCCCGTTCCCAAACACC+TGG + chr7_1:37836300-37836319 None:intergenic 65.0%
CACGGACACCGGACACGACA+CGG - chr7_1:37836739-37836758 Msa1018040:intron 65.0%
! GTCGGTGTCCGTGTCGTGTC+CGG + chr7_1:37836750-37836769 None:intergenic 65.0%
ACACCGACGCGTGTCCGACA+CGG - chr7_1:37836846-37836865 Msa1018040:intron 65.0%
CACGGGACACGCCTAATCCG+AGG - chr7_1:37836864-37836883 Msa1018040:intron 65.0%
GCACGGACGCTCCTCGGATT+AGG + chr7_1:37836878-37836897 None:intergenic 65.0%
CGGGGGAATACTTCGCGGAC+AGG - chr7_1:37838268-37838287 Msa1018040:intron 65.0%
! AACGGCTTGGGTCGGGGTGC+TGG - chr7_1:37836272-37836291 Msa1018040:intron 70.0%
! ACGGCTTGGGTCGGGGTGCT+GGG - chr7_1:37836273-37836292 Msa1018040:intron 70.0%
CGGACACCGACACGCCGACA+CGG - chr7_1:37836759-37836778 Msa1018040:intron 70.0%
CACCGACGCGTGTCCGACAC+GGG - chr7_1:37836847-37836866 Msa1018040:intron 70.0%
GTCCCGTGTCGGACACGCGT+CGG + chr7_1:37836852-37836871 None:intergenic 70.0%
! AAAGGCGGTGGCGGCGGAGG+CGG + chr7_1:37835969-37835988 None:intergenic 75.0%
! GCAAAAGGCGGTGGCGGCGG+AGG + chr7_1:37835972-37835991 None:intergenic 75.0%
!! TGGGTCGGGGTGCTGGGTCC+AGG - chr7_1:37836279-37836298 Msa1018040:intron 75.0%
!! GGTGGCGGCGGAGGCGGAGA+GGG + chr7_1:37835963-37835982 None:intergenic 80.0%
!! CGGTGGCGGCGGAGGCGGAG+AGG + chr7_1:37835964-37835983 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 37835459 37840003 37835459 ID=Msa1018040;Name=Msa1018040
chr7_1 mRNA 37835459 37840003 37835459 ID=Msa1018040-mRNA-1;Parent=Msa1018040;Name=Msa1018040-mRNA-1;_AED=0.01;_eAED=0.01;_QI=275|1|1|1|1|1|3|395|453
chr7_1 exon 37835459 37836033 37835459 ID=Msa1018040-mRNA-1:exon:7275;Parent=Msa1018040-mRNA-1
chr7_1 exon 37836950 37837211 37836950 ID=Msa1018040-mRNA-1:exon:7274;Parent=Msa1018040-mRNA-1
chr7_1 exon 37838809 37840003 37838809 ID=Msa1018040-mRNA-1:exon:7273;Parent=Msa1018040-mRNA-1
chr7_1 five_prime_UTR 37839729 37840003 37839729 ID=Msa1018040-mRNA-1:five_prime_utr;Parent=Msa1018040-mRNA-1
chr7_1 CDS 37838809 37839728 37838809 ID=Msa1018040-mRNA-1:cds;Parent=Msa1018040-mRNA-1
chr7_1 CDS 37836950 37837211 37836950 ID=Msa1018040-mRNA-1:cds;Parent=Msa1018040-mRNA-1
chr7_1 CDS 37835854 37836033 37835854 ID=Msa1018040-mRNA-1:cds;Parent=Msa1018040-mRNA-1
chr7_1 three_prime_UTR 37835459 37835853 37835459 ID=Msa1018040-mRNA-1:three_prime_utr;Parent=Msa1018040-mRNA-1
Gene Sequence

>Msa1018040

ATGCATCAGAAGAAATCGGAGGTCCAAATCGGAAAAGAAAGCGTAGGCGTCTCTTCCGATTTCAACCCAACACCACCAATTCAACACAACTATCAACAAACCTCTCAGCGTCAACACCTCTGTCCACGTCATCACTCCATCGACATCTCCCCAACAGAAATCATCTCCCGTCCTTCTAACAAACCGCCATTCAAACCGCCGCAAAACACGGCCTTCCATCATCTCACCCTCTCCGCCTCCGCCGCCACCGCCTTTTGCATCATCCGCCGCCTCAAGAAGCACCGTTCCGTTCTTCTAATCTCTCTTCCTCTTCTCTACCTTTACCTCCACGCTTCACGTTCTTTCTTTCTTGATTTTCTCACCGCTTTTGCTTTTTCAACGGCTTTGTTGTTTTCTCTTAATATAGCTCTTCCTTCTCTACGTTCATTTCCTCTTCATCTTAATTTGCATAAAATTCGTTCCTCTTCGTCGTCTCATTCACGATCTCCCCCTCCTCTTCCCGTTTTCTGGACCATAGGATCCCGACCCAAGTCAGAGAAACGGCTTGGGTCGGGGTGCTGGGTCCAGGTGTTTGGGAACGGGGACGTTTATGAGGGGGAGTTTCATAAGGGGAAGTGTTCAGGGAGTGGTGTTTATTATTATAGTATGAGTGGGAGGTATGAAGGGGATTGGATTGATGGAAGGTATGATGGGTATGGTGTGGAGACATGGGCAAGGGGAAGTCGTTATAGAGGGCAATATCGACAAGGATTGAGACATGGGTTCGGTGTTTATAGGTTTTATACGGGCGATGTTTATACTGGAGAATGGTCCAATGGTCAGAGTCATGGGTGTGGTGTTCATACTTGTGAAGATGGGAGTAGATATGTTGGAGAGTTTAAATGGGGTGTTAAACATGGTCTTGGTCATTATCATTTCAGAAACGGAGACACATACGCGGGGGAATACTTCGCGGACAGGATGCATGGATTTGGGGTATATCGTTTTGCAAATGGCCATCGATATGAAGGAGCCTGGCATGAGGGAAGAAGGCAAGGGCTTGGAATGTATACATTTAGAAATGGTGAAACCCAATCCGGTCATTGGCAAAATGGAGTGCTTGACATTCCAAGCACACAGAACACCACTTACCCTGTTTCTCCTGTTGGTGTCAATCATTCCAAAGTACTCACTGCCGTGCAGGAAGCAAGACGAGCAGCAGAGAAAGCCTATAATGTGAGCAAGGTAGAGGAAAGAGTAAACAGAGCAGTATCAGCAGCTAATAGAGCAGCCAATGCAGCTAGAGTAGCTGCTGTCAAAGCTGTGCAAAAGCAAATGCATCATCATGTCAACAATGAAGGTTTCCCAATTCCTGTTATGTAA
Protein sequence

>Msa1018040

MHQKKSEVQIGKESVGVSSDFNPTPPIQHNYQQTSQRQHLCPRHHSIDISPTEIISRPSNKPPFKPPQNTAFHHLTLSASAATAFCIIRRLKKHRSVLLISLPLLYLYLHASRSFFLDFLTAFAFSTALLFSLNIALPSLRSFPLHLNLHKIRSSSSSHSRSPPPLPVFWTIGSRPKSEKRLGSGCWVQVFGNGDVYEGEFHKGKCSGSGVYYYSMSGRYEGDWIDGRYDGYGVETWARGSRYRGQYRQGLRHGFGVYRFYTGDVYTGEWSNGQSHGCGVHTCEDGSRYVGEFKWGVKHGLGHYHFRNGDTYAGEYFADRMHGFGVYRFANGHRYEGAWHEGRRQGLGMYTFRNGETQSGHWQNGVLDIPSTQNTTYPVSPVGVNHSKVLTAVQEARRAAEKAYNVSKVEERVNRAVSAANRAANAARVAAVKAVQKQMHHHVNNEGFPIPVM*