Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642180 | XP_003606265.1 | 95.918 | 196 | 8 | 0 | 1 | 196 | 1 | 196 | 2.01e-137 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642180 | sp|Q56XJ7|Y4276_ARATH | 38.710 | 93 | 55 | 1 | 68 | 160 | 119 | 209 | 2.29e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642180 | G7JL02 | 95.918 | 196 | 8 | 0 | 1 | 196 | 1 | 196 | 9.60e-138 | 392 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006700 | Msa0642180 | 0.811393 | 7.161147e-51 | -8.615850e-47 |
| Msa0022640 | Msa0642180 | 0.803639 | 3.166860e-49 | -8.615850e-47 |
| Msa0044710 | Msa0642180 | 0.810879 | 9.256290e-51 | -8.615850e-47 |
| Msa0607200 | Msa0642180 | 0.813010 | 3.177339e-51 | -8.615850e-47 |
| Msa0610370 | Msa0642180 | 0.801112 | 1.049728e-48 | -8.615850e-47 |
| Msa0642180 | Msa0649970 | 0.800784 | 1.224891e-48 | -8.615850e-47 |
| Msa0642180 | Msa0651400 | 0.812628 | 3.852554e-51 | -8.615850e-47 |
| Msa0642180 | Msa0672120 | 0.828044 | 1.118640e-54 | -8.615850e-47 |
| Msa0642180 | Msa0734660 | 0.801732 | 7.835969e-49 | -8.615850e-47 |
| Msa0642180 | Msa0760890 | 0.800570 | 1.354791e-48 | -8.615850e-47 |
| Msa0642180 | Msa0813670 | 0.801321 | 9.514387e-49 | -8.615850e-47 |
| Msa0642180 | Msa0909710 | 0.804469 | 2.127819e-49 | -8.615850e-47 |
| Msa0642180 | Msa0937940 | 0.804136 | 2.497338e-49 | -8.615850e-47 |
| Msa0642180 | Msa0946320 | 0.816312 | 5.900006e-52 | -8.615850e-47 |
| Msa0642180 | Msa1004210 | 0.809946 | 1.471744e-50 | -8.615850e-47 |
| Msa0642180 | Msa1046610 | 0.822885 | 1.863962e-53 | -8.615850e-47 |
| Msa0642180 | Msa1095480 | 0.805829 | 1.105218e-49 | -8.615850e-47 |
| Msa0642180 | Msa1142500 | 0.809909 | 1.499070e-50 | -8.615850e-47 |
| Msa0642180 | Msa1182830 | 0.806303 | 8.781377e-50 | -8.615850e-47 |
| Msa0642180 | Msa1280130 | 0.812104 | 5.013252e-51 | -8.615850e-47 |
| Msa0642180 | Msa1336480 | 0.803462 | 3.445678e-49 | -8.615850e-47 |
| Msa0642180 | Msa1348950 | 0.816286 | 5.979370e-52 | -8.615850e-47 |
| Msa0642180 | Msa1362880 | 0.803033 | 4.228683e-49 | -8.615850e-47 |
| Msa0642180 | Msa1378460 | 0.802737 | 4.867502e-49 | -8.615850e-47 |
| Msa0642180 | Msa1384320 | 0.807461 | 4.997644e-50 | -8.615850e-47 |
| Msa0642180 | Msa1385620 | 0.809755 | 1.617840e-50 | -8.615850e-47 |
| Msa0642180 | Msa1396830 | 0.814473 | 1.513531e-51 | -8.615850e-47 |
| Msa0642180 | Msa1427830 | 0.820965 | 5.189130e-53 | -8.615850e-47 |
| Msa0642180 | Msa1439120 | 0.800623 | 1.321598e-48 | -8.615850e-47 |
| Msa0642180 | Msa1440220 | 0.813455 | 2.537880e-51 | -8.615850e-47 |
| Msa0642180 | Msa1440610 | 0.805287 | 1.436015e-49 | -8.615850e-47 |
| Msa0642180 | Msa1442290 | 0.801993 | 6.925406e-49 | -8.615850e-47 |
| Msa0642180 | Msa1453710 | 0.800570 | 1.354613e-48 | -8.615850e-47 |
| Msa0642180 | Msa1454110 | 0.806334 | 8.652326e-50 | -8.615850e-47 |
| Msa0155110 | Msa0642180 | 0.800735 | 1.253443e-48 | -8.615850e-47 |
| Msa0182640 | Msa0642180 | 0.827958 | 1.173661e-54 | -8.615850e-47 |
| Msa0199730 | Msa0642180 | 0.836365 | 9.765335e-57 | -8.615850e-47 |
| Msa0208630 | Msa0642180 | 0.820317 | 7.312122e-53 | -8.615850e-47 |
| Msa0380040 | Msa0642180 | 0.823657 | 1.230987e-53 | -8.615850e-47 |
| Msa0389310 | Msa0642180 | 0.804649 | 1.952315e-49 | -8.615850e-47 |
| Msa0419970 | Msa0642180 | 0.818644 | 1.760453e-52 | -8.615850e-47 |
| Msa0429290 | Msa0642180 | 0.815229 | 1.028779e-51 | -8.615850e-47 |
| Msa0475580 | Msa0642180 | 0.824067 | 9.866967e-54 | -8.615850e-47 |
| Msa0280490 | Msa0642180 | 0.826341 | 2.861538e-54 | -8.615850e-47 |
| Msa0301980 | Msa0642180 | 0.816801 | 4.585250e-52 | -8.615850e-47 |
| Msa0313920 | Msa0642180 | 0.800461 | 1.425912e-48 | -8.615850e-47 |
| Msa0326670 | Msa0642180 | 0.808036 | 3.772046e-50 | -8.615850e-47 |
| Msa0519220 | Msa0642180 | 0.819113 | 1.377596e-52 | -8.615850e-47 |
| Msa0540070 | Msa0642180 | 0.839384 | 1.636644e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642180 | MtrunA17_Chr4g0027171 | 95.918 | 196 | 8 | 0 | 1 | 196 | 1 | 196 | 1.85e-141 | 392 |
| Msa0642180 | MtrunA17_Chr2g0320881 | 56.000 | 175 | 65 | 6 | 15 | 182 | 8 | 177 | 1.12e-57 | 180 |
| Msa0642180 | MtrunA17_Chr4g0056791 | 43.077 | 130 | 58 | 2 | 69 | 196 | 57 | 172 | 4.36e-28 | 103 |
| Msa0642180 | MtrunA17_Chr5g0398651 | 50.575 | 87 | 43 | 0 | 69 | 155 | 26 | 112 | 2.14e-24 | 92.4 |
| Msa0642180 | MtrunA17_Chr5g0398661 | 40.741 | 81 | 48 | 0 | 72 | 152 | 117 | 197 | 1.11e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642180 | AT2G27830.1 | 51.337 | 187 | 76 | 6 | 13 | 194 | 14 | 190 | 3.20e-51 | 164 |
| Msa0642180 | AT4G22758.1 | 38.710 | 93 | 55 | 1 | 68 | 160 | 119 | 209 | 2.33e-13 | 67.0 |
Find 65 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAATAAACAATAAATTAT+TGG | 0.205872 | 4_3:-43597172 | None:intergenic |
| TCACCCTCTTCTAACTTCTT+TGG | 0.260347 | 4_3:-43596977 | None:intergenic |
| AATGAGAAGCTTAGGGAAAT+TGG | 0.268212 | 4_3:+43596932 | Msa0642180:CDS |
| GCCGACGAAGTTACTCATTA+AGG | 0.295975 | 4_3:+43596508 | Msa0642180:CDS |
| AATACTAGTAACTGTTGTTT+TGG | 0.320158 | 4_3:-43597148 | None:intergenic |
| ACAAAGCGAGAATGGAAAAT+AGG | 0.322225 | 4_3:-43596144 | None:intergenic |
| GAGTAACTTCGTCGGCTGTC+TGG | 0.327050 | 4_3:-43596501 | None:intergenic |
| GCTTCCTTCGACGGCAAGAT+TGG | 0.327598 | 4_3:-43596641 | None:intergenic |
| TAGATAGAAATGAGAAGCTT+AGG | 0.354365 | 4_3:+43596924 | Msa0642180:CDS |
| TTGCCGCACGCTTCCTGTCC+TGG | 0.374159 | 4_3:-43596451 | None:intergenic |
| ACAAGGTCCGGCATAGTCTT+TGG | 0.414724 | 4_3:-43596428 | None:intergenic |
| AGATAGAAATGAGAAGCTTA+GGG | 0.436886 | 4_3:+43596925 | Msa0642180:CDS |
| ATTTGATAGCGGAGGCTGTA+AGG | 0.439277 | 4_3:+43596594 | Msa0642180:CDS |
| GAGTTTCCACATGGCTGTTA+CGG | 0.442601 | 4_3:-43596322 | None:intergenic |
| GGGTTGGAGAAGATGAGGTT+TGG | 0.453885 | 4_3:-43596205 | None:intergenic |
| ACTCATTAAGGTTACGATGA+TGG | 0.455220 | 4_3:+43596520 | Msa0642180:CDS |
| CTCATTAAGGTTACGATGAT+GGG | 0.455912 | 4_3:+43596521 | Msa0642180:CDS |
| AAGTTAGAAGAGGGTGAGAA+TGG | 0.456824 | 4_3:+43596983 | Msa0642180:CDS |
| TAAACGACGCCGTTACGTTA+CGG | 0.463820 | 4_3:-43597012 | None:intergenic |
| GAAGTGTGAGCCTCAGACTC+TGG | 0.466362 | 4_3:-43596099 | None:intergenic |
| AGTAACTTCGTCGGCTGTCT+GGG | 0.474432 | 4_3:-43596500 | None:intergenic |
| ATAACCAGACAAAGCGAGAA+TGG | 0.480282 | 4_3:-43596152 | None:intergenic |
| CACGCTTCCTGTCCTGGACA+AGG | 0.482528 | 4_3:-43596445 | None:intergenic |
| TTCCTGTCCTGGACAAGGTC+CGG | 0.485224 | 4_3:-43596440 | None:intergenic |
| ATCTATAGTGAGGAAAATCA+AGG | 0.497119 | 4_3:-43596226 | None:intergenic |
| TTAGAAGAGGGTGAGAATGG+TGG | 0.502205 | 4_3:+43596986 | Msa0642180:CDS |
| TTTACAGGTAGGGGTAAAGT+GGG | 0.516956 | 4_3:-43596272 | None:intergenic |
| GTTACGATGATGGGCAGCCT+TGG | 0.521614 | 4_3:+43596530 | Msa0642180:CDS |
| TGCCGGACCTTGTCCAGGAC+AGG | 0.523940 | 4_3:+43596438 | Msa0642180:CDS |
| GACTATGCCGGACCTTGTCC+AGG | 0.528186 | 4_3:+43596433 | Msa0642180:CDS |
| GTTTAGTTCATGTTCCAGAC+AGG | 0.529936 | 4_3:+43597030 | Msa0642180:CDS |
| ATCGACATTAACACTTGCAC+GGG | 0.533383 | 4_3:-43596554 | None:intergenic |
| CGTGCAAGTGTTAATGTCGA+TGG | 0.536743 | 4_3:+43596556 | Msa0642180:CDS |
| ATCAAGGGTTGGAGAAGATG+AGG | 0.542417 | 4_3:-43596210 | None:intergenic |
| CACTGTCCAGTGCAAAACTC+CGG | 0.545078 | 4_3:+43596402 | Msa0642180:CDS |
| CCGGCATAGTCTTTGGCCGC+CGG | 0.545096 | 4_3:-43596421 | None:intergenic |
| AAGCAAGAAGCTTCCTTCGA+CGG | 0.546345 | 4_3:-43596650 | None:intergenic |
| CTAAGCTGAACTGAGAGTAA+TGG | 0.548792 | 4_3:-43596679 | None:intergenic |
| GTAAGGTTGTATGTTAAAGA+AGG | 0.550051 | 4_3:+43596611 | Msa0642180:CDS |
| CTCGCCGGTGAGTTTCCACA+TGG | 0.551416 | 4_3:-43596331 | None:intergenic |
| CCGTCCAATCTTGCCGTCGA+AGG | 0.553306 | 4_3:+43596637 | Msa0642180:CDS |
| CATCGACATTAACACTTGCA+CGG | 0.553702 | 4_3:-43596555 | None:intergenic |
| AGCTTAGGGAAATTGGATCA+AGG | 0.569028 | 4_3:+43596939 | Msa0642180:CDS |
| CCTTCGACGGCAAGATTGGA+CGG | 0.570300 | 4_3:-43596637 | None:intergenic |
| GGCAATGACTACGTTGCCAC+CGG | 0.575365 | 4_3:+43596469 | Msa0642180:CDS |
| TGTCCAAAGAAGTTAGAAGA+GGG | 0.591454 | 4_3:+43596974 | Msa0642180:CDS |
| TTAACACTTGCACGGGACCA+AGG | 0.594751 | 4_3:-43596547 | None:intergenic |
| TAGTGAGGAAAATCAAGGGT+TGG | 0.598377 | 4_3:-43596221 | None:intergenic |
| CCGGCGGCCAAAGACTATGC+CGG | 0.600487 | 4_3:+43596421 | Msa0642180:CDS |
| TTACAGGTAGGGGTAAAGTG+GGG | 0.603053 | 4_3:-43596271 | None:intergenic |
| ACAGCCATGTGGAAACTCAC+CGG | 0.621173 | 4_3:+43596327 | Msa0642180:CDS |
| GTGTCCAAAGAAGTTAGAAG+AGG | 0.623462 | 4_3:+43596973 | Msa0642180:CDS |
| ATGTCGATGGAATCGACGGT+TGG | 0.625000 | 4_3:+43596569 | Msa0642180:CDS |
| ACCTTAATGAGTAACTTCGT+CGG | 0.631958 | 4_3:-43596509 | None:intergenic |
| TATCTGAAATATCTATAGTG+AGG | 0.634051 | 4_3:-43596236 | None:intergenic |
| GTTAATGTCGATGGAATCGA+CGG | 0.637103 | 4_3:+43596565 | Msa0642180:CDS |
| TCTATAGTGAGGAAAATCAA+GGG | 0.637563 | 4_3:-43596225 | None:intergenic |
| TCTCTGTTAATCTTCCTCGC+CGG | 0.646426 | 4_3:-43596346 | None:intergenic |
| TGGTGGAGACCGTAACGTAA+CGG | 0.646931 | 4_3:+43597003 | Msa0642180:CDS |
| GGTTGGAGATTTGATAGCGG+AGG | 0.649039 | 4_3:+43596586 | Msa0642180:CDS |
| TGTCCAGGACAGGAAGCGTG+CGG | 0.659036 | 4_3:+43596448 | Msa0642180:CDS |
| TGTCCAGTGCAAAACTCCGG+CGG | 0.689368 | 4_3:+43596405 | Msa0642180:CDS |
| AAACTACCGTAACAGCCATG+TGG | 0.698169 | 4_3:+43596316 | Msa0642180:CDS |
| GACGGTTGGAGATTTGATAG+CGG | 0.709738 | 4_3:+43596583 | Msa0642180:CDS |
| CATGTGGAAACTCACCGGCG+AGG | 0.716518 | 4_3:+43596332 | Msa0642180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAGTTATTATTTTTTGT+TGG | + | chr4_3:43596869-43596888 | Msa0642180:intron | 10.0% |
| !!! | ATTTAGTTATTATTTTTTGT+TGG | + | chr4_3:43596869-43596888 | Msa0642180:intron | 10.0% |
| !!! | AAAATTCACTTGTTAATAAA+TGG | - | chr4_3:43596741-43596760 | None:intergenic | 15.0% |
| !!! | TATAGATTTTTTGATATGAT+TGG | + | chr4_3:43597090-43597109 | Msa0642180:exon | 15.0% |
| !!! | ATAGATTTTTTGATATGATT+GGG | + | chr4_3:43597091-43597110 | Msa0642180:exon | 15.0% |
| !!! | AAAATTCACTTGTTAATAAA+TGG | - | chr4_3:43596741-43596760 | None:intergenic | 15.0% |
| !!! | TATAGATTTTTTGATATGAT+TGG | + | chr4_3:43597090-43597109 | Msa0642180:exon | 15.0% |
| !!! | ATAGATTTTTTGATATGATT+GGG | + | chr4_3:43597091-43597110 | Msa0642180:exon | 15.0% |
| !!! | TAGTTATTATTTTTTGTTGG+AGG | + | chr4_3:43596872-43596891 | Msa0642180:intron | 20.0% |
| !!! | AGTTATTATTTTTTGTTGGA+GGG | + | chr4_3:43596873-43596892 | Msa0642180:intron | 20.0% |
| !!! | TAGTTATTATTTTTTGTTGG+AGG | + | chr4_3:43596872-43596891 | Msa0642180:intron | 20.0% |
| !!! | AGTTATTATTTTTTGTTGGA+GGG | + | chr4_3:43596873-43596892 | Msa0642180:intron | 20.0% |
| !! | TATCTGAAATATCTATAGTG+AGG | - | chr4_3:43596239-43596258 | None:intergenic | 25.0% |
| ! | TGGACTATGAAAACTAAAAT+TGG | - | chr4_3:43596721-43596740 | None:intergenic | 25.0% |
| !!! | TTGATTTGTTTTATTTGTGC+AGG | + | chr4_3:43596899-43596918 | Msa0642180:intron | 25.0% |
| !!! | AATACTAGTAACTGTTGTTT+TGG | - | chr4_3:43597151-43597170 | None:intergenic | 25.0% |
| !! | TATCTGAAATATCTATAGTG+AGG | - | chr4_3:43596239-43596258 | None:intergenic | 25.0% |
| ! | TGGACTATGAAAACTAAAAT+TGG | - | chr4_3:43596721-43596740 | None:intergenic | 25.0% |
| !!! | TTGATTTGTTTTATTTGTGC+AGG | + | chr4_3:43596899-43596918 | Msa0642180:intron | 25.0% |
| !!! | AATACTAGTAACTGTTGTTT+TGG | - | chr4_3:43597151-43597170 | None:intergenic | 25.0% |
| TCTATAGTGAGGAAAATCAA+GGG | - | chr4_3:43596228-43596247 | None:intergenic | 30.0% | |
| ATCTATAGTGAGGAAAATCA+AGG | - | chr4_3:43596229-43596248 | None:intergenic | 30.0% | |
| ! | GAGAAATCATCATCTTTTCA+CGG | + | chr4_3:43596365-43596384 | Msa0642180:CDS | 30.0% |
| GTAAGGTTGTATGTTAAAGA+AGG | + | chr4_3:43596611-43596630 | Msa0642180:CDS | 30.0% | |
| TAGATAGAAATGAGAAGCTT+AGG | + | chr4_3:43596924-43596943 | Msa0642180:CDS | 30.0% | |
| AGATAGAAATGAGAAGCTTA+GGG | + | chr4_3:43596925-43596944 | Msa0642180:CDS | 30.0% | |
| TCTATAGTGAGGAAAATCAA+GGG | - | chr4_3:43596228-43596247 | None:intergenic | 30.0% | |
| ATCTATAGTGAGGAAAATCA+AGG | - | chr4_3:43596229-43596248 | None:intergenic | 30.0% | |
| ! | GAGAAATCATCATCTTTTCA+CGG | + | chr4_3:43596365-43596384 | Msa0642180:CDS | 30.0% |
| GTAAGGTTGTATGTTAAAGA+AGG | + | chr4_3:43596611-43596630 | Msa0642180:CDS | 30.0% | |
| TAGATAGAAATGAGAAGCTT+AGG | + | chr4_3:43596924-43596943 | Msa0642180:CDS | 30.0% | |
| AGATAGAAATGAGAAGCTTA+GGG | + | chr4_3:43596925-43596944 | Msa0642180:CDS | 30.0% | |
| GTATAAAAATCCAGAGTCTG+AGG | + | chr4_3:43596089-43596108 | Msa0642180:five_prime_UTR | 35.0% | |
| ACAAAGCGAGAATGGAAAAT+AGG | - | chr4_3:43596147-43596166 | None:intergenic | 35.0% | |
| !!! | AGGTTTGGTTTTGTGGTTTA+TGG | - | chr4_3:43596193-43596212 | None:intergenic | 35.0% |
| ! | TTTGACATGGTGGTTTTTAC+AGG | - | chr4_3:43596290-43596309 | None:intergenic | 35.0% |
| ! | GTAGTTTTTGACGTTTGACA+TGG | - | chr4_3:43596303-43596322 | None:intergenic | 35.0% |
| ACCTTAATGAGTAACTTCGT+CGG | - | chr4_3:43596512-43596531 | None:intergenic | 35.0% | |
| ACTCATTAAGGTTACGATGA+TGG | + | chr4_3:43596520-43596539 | Msa0642180:CDS | 35.0% | |
| CTCATTAAGGTTACGATGAT+GGG | + | chr4_3:43596521-43596540 | Msa0642180:CDS | 35.0% | |
| CAGAGAAATTAGATACGTCA+CGG | - | chr4_3:43596787-43596806 | None:intergenic | 35.0% | |
| ACAACTGAGTTATGCTAACT+AGG | + | chr4_3:43596807-43596826 | Msa0642180:intron | 35.0% | |
| ACTAGGACAACGTGAATATT+AGG | + | chr4_3:43596824-43596843 | Msa0642180:intron | 35.0% | |
| AATGAGAAGCTTAGGGAAAT+TGG | + | chr4_3:43596932-43596951 | Msa0642180:CDS | 35.0% | |
| TGTCCAAAGAAGTTAGAAGA+GGG | + | chr4_3:43596974-43596993 | Msa0642180:CDS | 35.0% | |
| ! | GAAAAAGTGAGCAAAGGTTT+TGG | + | chr4_3:43597055-43597074 | Msa0642180:CDS | 35.0% |
| !! | GCAAAGGTTTTGGTCTTTTA+AGG | + | chr4_3:43597065-43597084 | Msa0642180:CDS | 35.0% |
| GTATAAAAATCCAGAGTCTG+AGG | + | chr4_3:43596089-43596108 | Msa0642180:five_prime_UTR | 35.0% | |
| ACAAAGCGAGAATGGAAAAT+AGG | - | chr4_3:43596147-43596166 | None:intergenic | 35.0% | |
| !!! | AGGTTTGGTTTTGTGGTTTA+TGG | - | chr4_3:43596193-43596212 | None:intergenic | 35.0% |
| ! | TTTGACATGGTGGTTTTTAC+AGG | - | chr4_3:43596290-43596309 | None:intergenic | 35.0% |
| ! | GTAGTTTTTGACGTTTGACA+TGG | - | chr4_3:43596303-43596322 | None:intergenic | 35.0% |
| ACCTTAATGAGTAACTTCGT+CGG | - | chr4_3:43596512-43596531 | None:intergenic | 35.0% | |
| ACTCATTAAGGTTACGATGA+TGG | + | chr4_3:43596520-43596539 | Msa0642180:CDS | 35.0% | |
| CTCATTAAGGTTACGATGAT+GGG | + | chr4_3:43596521-43596540 | Msa0642180:CDS | 35.0% | |
| CAGAGAAATTAGATACGTCA+CGG | - | chr4_3:43596787-43596806 | None:intergenic | 35.0% | |
| ACAACTGAGTTATGCTAACT+AGG | + | chr4_3:43596807-43596826 | Msa0642180:intron | 35.0% | |
| ACTAGGACAACGTGAATATT+AGG | + | chr4_3:43596824-43596843 | Msa0642180:intron | 35.0% | |
| AATGAGAAGCTTAGGGAAAT+TGG | + | chr4_3:43596932-43596951 | Msa0642180:CDS | 35.0% | |
| TGTCCAAAGAAGTTAGAAGA+GGG | + | chr4_3:43596974-43596993 | Msa0642180:CDS | 35.0% | |
| ! | GAAAAAGTGAGCAAAGGTTT+TGG | + | chr4_3:43597055-43597074 | Msa0642180:CDS | 35.0% |
| !! | GCAAAGGTTTTGGTCTTTTA+AGG | + | chr4_3:43597065-43597084 | Msa0642180:CDS | 35.0% |
| ! | TTTTCCATTCTCGCTTTGTC+TGG | + | chr4_3:43596148-43596167 | Msa0642180:five_prime_UTR | 40.0% |
| ATAACCAGACAAAGCGAGAA+TGG | - | chr4_3:43596155-43596174 | None:intergenic | 40.0% | |
| !!! | GAAGATGAGGTTTGGTTTTG+TGG | - | chr4_3:43596200-43596219 | None:intergenic | 40.0% |
| TAGTGAGGAAAATCAAGGGT+TGG | - | chr4_3:43596224-43596243 | None:intergenic | 40.0% | |
| TTTACAGGTAGGGGTAAAGT+GGG | - | chr4_3:43596275-43596294 | None:intergenic | 40.0% | |
| ! | TTTTACAGGTAGGGGTAAAG+TGG | - | chr4_3:43596276-43596295 | None:intergenic | 40.0% |
| ! | ATGGTGGTTTTTACAGGTAG+GGG | - | chr4_3:43596284-43596303 | None:intergenic | 40.0% |
| ! | CATGGTGGTTTTTACAGGTA+GGG | - | chr4_3:43596285-43596304 | None:intergenic | 40.0% |
| ! | ACATGGTGGTTTTTACAGGT+AGG | - | chr4_3:43596286-43596305 | None:intergenic | 40.0% |
| ! | GTTTTTGACGTTTGACATGG+TGG | - | chr4_3:43596300-43596319 | None:intergenic | 40.0% |
| ATCGACATTAACACTTGCAC+GGG | - | chr4_3:43596557-43596576 | None:intergenic | 40.0% | |
| CATCGACATTAACACTTGCA+CGG | - | chr4_3:43596558-43596577 | None:intergenic | 40.0% | |
| GTTAATGTCGATGGAATCGA+CGG | + | chr4_3:43596565-43596584 | Msa0642180:CDS | 40.0% | |
| CTAAGCTGAACTGAGAGTAA+TGG | - | chr4_3:43596682-43596701 | None:intergenic | 40.0% | |
| AGCTTAGGGAAATTGGATCA+AGG | + | chr4_3:43596939-43596958 | Msa0642180:CDS | 40.0% | |
| GTGTCCAAAGAAGTTAGAAG+AGG | + | chr4_3:43596973-43596992 | Msa0642180:CDS | 40.0% | |
| TCACCCTCTTCTAACTTCTT+TGG | - | chr4_3:43596980-43596999 | None:intergenic | 40.0% | |
| AAGTTAGAAGAGGGTGAGAA+TGG | + | chr4_3:43596983-43597002 | Msa0642180:CDS | 40.0% | |
| ! | GTTTAGTTCATGTTCCAGAC+AGG | + | chr4_3:43597030-43597049 | Msa0642180:CDS | 40.0% |
| ! | CAGGTTGAAAAAGTGAGCAA+AGG | + | chr4_3:43597049-43597068 | Msa0642180:CDS | 40.0% |
| !!! | TAACTGTTGTTTTGGCAGCA+TGG | - | chr4_3:43597143-43597162 | None:intergenic | 40.0% |
| ! | TTTTCCATTCTCGCTTTGTC+TGG | + | chr4_3:43596148-43596167 | Msa0642180:five_prime_UTR | 40.0% |
| ATAACCAGACAAAGCGAGAA+TGG | - | chr4_3:43596155-43596174 | None:intergenic | 40.0% | |
| !!! | GAAGATGAGGTTTGGTTTTG+TGG | - | chr4_3:43596200-43596219 | None:intergenic | 40.0% |
| TAGTGAGGAAAATCAAGGGT+TGG | - | chr4_3:43596224-43596243 | None:intergenic | 40.0% | |
| TTTACAGGTAGGGGTAAAGT+GGG | - | chr4_3:43596275-43596294 | None:intergenic | 40.0% | |
| ! | TTTTACAGGTAGGGGTAAAG+TGG | - | chr4_3:43596276-43596295 | None:intergenic | 40.0% |
| ! | ATGGTGGTTTTTACAGGTAG+GGG | - | chr4_3:43596284-43596303 | None:intergenic | 40.0% |
| ! | CATGGTGGTTTTTACAGGTA+GGG | - | chr4_3:43596285-43596304 | None:intergenic | 40.0% |
| ! | ACATGGTGGTTTTTACAGGT+AGG | - | chr4_3:43596286-43596305 | None:intergenic | 40.0% |
| ! | GTTTTTGACGTTTGACATGG+TGG | - | chr4_3:43596300-43596319 | None:intergenic | 40.0% |
| ATCGACATTAACACTTGCAC+GGG | - | chr4_3:43596557-43596576 | None:intergenic | 40.0% | |
| CATCGACATTAACACTTGCA+CGG | - | chr4_3:43596558-43596577 | None:intergenic | 40.0% | |
| GTTAATGTCGATGGAATCGA+CGG | + | chr4_3:43596565-43596584 | Msa0642180:CDS | 40.0% | |
| CTAAGCTGAACTGAGAGTAA+TGG | - | chr4_3:43596682-43596701 | None:intergenic | 40.0% | |
| AGCTTAGGGAAATTGGATCA+AGG | + | chr4_3:43596939-43596958 | Msa0642180:CDS | 40.0% | |
| GTGTCCAAAGAAGTTAGAAG+AGG | + | chr4_3:43596973-43596992 | Msa0642180:CDS | 40.0% | |
| TCACCCTCTTCTAACTTCTT+TGG | - | chr4_3:43596980-43596999 | None:intergenic | 40.0% | |
| AAGTTAGAAGAGGGTGAGAA+TGG | + | chr4_3:43596983-43597002 | Msa0642180:CDS | 40.0% | |
| ! | GTTTAGTTCATGTTCCAGAC+AGG | + | chr4_3:43597030-43597049 | Msa0642180:CDS | 40.0% |
| ! | CAGGTTGAAAAAGTGAGCAA+AGG | + | chr4_3:43597049-43597068 | Msa0642180:CDS | 40.0% |
| !!! | TAACTGTTGTTTTGGCAGCA+TGG | - | chr4_3:43597143-43597162 | None:intergenic | 40.0% |
| ATCAAGGGTTGGAGAAGATG+AGG | - | chr4_3:43596213-43596232 | None:intergenic | 45.0% | |
| TTACAGGTAGGGGTAAAGTG+GGG | - | chr4_3:43596274-43596293 | None:intergenic | 45.0% | |
| AAACTACCGTAACAGCCATG+TGG | + | chr4_3:43596316-43596335 | Msa0642180:CDS | 45.0% | |
| GAGTTTCCACATGGCTGTTA+CGG | - | chr4_3:43596325-43596344 | None:intergenic | 45.0% | |
| TCTCTGTTAATCTTCCTCGC+CGG | - | chr4_3:43596349-43596368 | None:intergenic | 45.0% | |
| GCCGACGAAGTTACTCATTA+AGG | + | chr4_3:43596508-43596527 | Msa0642180:CDS | 45.0% | |
| CGTGCAAGTGTTAATGTCGA+TGG | + | chr4_3:43596556-43596575 | Msa0642180:CDS | 45.0% | |
| GACGGTTGGAGATTTGATAG+CGG | + | chr4_3:43596583-43596602 | Msa0642180:CDS | 45.0% | |
| !! | ATTTGATAGCGGAGGCTGTA+AGG | + | chr4_3:43596594-43596613 | Msa0642180:CDS | 45.0% |
| AAGCAAGAAGCTTCCTTCGA+CGG | - | chr4_3:43596653-43596672 | None:intergenic | 45.0% | |
| TTAGAAGAGGGTGAGAATGG+TGG | + | chr4_3:43596986-43597005 | Msa0642180:CDS | 45.0% | |
| TAAACGACGCCGTTACGTTA+CGG | - | chr4_3:43597015-43597034 | None:intergenic | 45.0% | |
| !!! | GCTCACTTTTTCAACCTGTC+TGG | - | chr4_3:43597047-43597066 | None:intergenic | 45.0% |
| ATCAAGGGTTGGAGAAGATG+AGG | - | chr4_3:43596213-43596232 | None:intergenic | 45.0% | |
| TTACAGGTAGGGGTAAAGTG+GGG | - | chr4_3:43596274-43596293 | None:intergenic | 45.0% | |
| AAACTACCGTAACAGCCATG+TGG | + | chr4_3:43596316-43596335 | Msa0642180:CDS | 45.0% | |
| GAGTTTCCACATGGCTGTTA+CGG | - | chr4_3:43596325-43596344 | None:intergenic | 45.0% | |
| TCTCTGTTAATCTTCCTCGC+CGG | - | chr4_3:43596349-43596368 | None:intergenic | 45.0% | |
| GCCGACGAAGTTACTCATTA+AGG | + | chr4_3:43596508-43596527 | Msa0642180:CDS | 45.0% | |
| CGTGCAAGTGTTAATGTCGA+TGG | + | chr4_3:43596556-43596575 | Msa0642180:CDS | 45.0% | |
| GACGGTTGGAGATTTGATAG+CGG | + | chr4_3:43596583-43596602 | Msa0642180:CDS | 45.0% | |
| !! | ATTTGATAGCGGAGGCTGTA+AGG | + | chr4_3:43596594-43596613 | Msa0642180:CDS | 45.0% |
| AAGCAAGAAGCTTCCTTCGA+CGG | - | chr4_3:43596653-43596672 | None:intergenic | 45.0% | |
| TTAGAAGAGGGTGAGAATGG+TGG | + | chr4_3:43596986-43597005 | Msa0642180:CDS | 45.0% | |
| TAAACGACGCCGTTACGTTA+CGG | - | chr4_3:43597015-43597034 | None:intergenic | 45.0% | |
| !!! | GCTCACTTTTTCAACCTGTC+TGG | - | chr4_3:43597047-43597066 | None:intergenic | 45.0% |
| !! | ATAAATAAACAATAAATTAT+TGG | - | chr4_3:43597175-43597194 | None:intergenic | 5.0% |
| !! | ATAAATAAACAATAAATTAT+TGG | - | chr4_3:43597175-43597194 | None:intergenic | 5.0% |
| GGGTTGGAGAAGATGAGGTT+TGG | - | chr4_3:43596208-43596227 | None:intergenic | 50.0% | |
| ACAGCCATGTGGAAACTCAC+CGG | + | chr4_3:43596327-43596346 | Msa0642180:CDS | 50.0% | |
| CACTGTCCAGTGCAAAACTC+CGG | + | chr4_3:43596402-43596421 | Msa0642180:CDS | 50.0% | |
| ACAAGGTCCGGCATAGTCTT+TGG | - | chr4_3:43596431-43596450 | None:intergenic | 50.0% | |
| TGTCTGGGAAAAAACTCCGG+TGG | - | chr4_3:43596488-43596507 | None:intergenic | 50.0% | |
| GGCTGTCTGGGAAAAAACTC+CGG | - | chr4_3:43596491-43596510 | None:intergenic | 50.0% | |
| ! | AGTAACTTCGTCGGCTGTCT+GGG | - | chr4_3:43596503-43596522 | None:intergenic | 50.0% |
| TTAACACTTGCACGGGACCA+AGG | - | chr4_3:43596550-43596569 | None:intergenic | 50.0% | |
| ATGTCGATGGAATCGACGGT+TGG | + | chr4_3:43596569-43596588 | Msa0642180:CDS | 50.0% | |
| !! | GGTTGGAGATTTGATAGCGG+AGG | + | chr4_3:43596586-43596605 | Msa0642180:CDS | 50.0% |
| TGGTGGAGACCGTAACGTAA+CGG | + | chr4_3:43597003-43597022 | Msa0642180:CDS | 50.0% | |
| !! | GTTTTGGCAGCATGGACAAG+TGG | - | chr4_3:43597135-43597154 | None:intergenic | 50.0% |
| GGGTTGGAGAAGATGAGGTT+TGG | - | chr4_3:43596208-43596227 | None:intergenic | 50.0% | |
| ACAGCCATGTGGAAACTCAC+CGG | + | chr4_3:43596327-43596346 | Msa0642180:CDS | 50.0% | |
| CACTGTCCAGTGCAAAACTC+CGG | + | chr4_3:43596402-43596421 | Msa0642180:CDS | 50.0% | |
| ACAAGGTCCGGCATAGTCTT+TGG | - | chr4_3:43596431-43596450 | None:intergenic | 50.0% | |
| TGTCTGGGAAAAAACTCCGG+TGG | - | chr4_3:43596488-43596507 | None:intergenic | 50.0% | |
| GGCTGTCTGGGAAAAAACTC+CGG | - | chr4_3:43596491-43596510 | None:intergenic | 50.0% | |
| ! | AGTAACTTCGTCGGCTGTCT+GGG | - | chr4_3:43596503-43596522 | None:intergenic | 50.0% |
| TTAACACTTGCACGGGACCA+AGG | - | chr4_3:43596550-43596569 | None:intergenic | 50.0% | |
| ATGTCGATGGAATCGACGGT+TGG | + | chr4_3:43596569-43596588 | Msa0642180:CDS | 50.0% | |
| !! | GGTTGGAGATTTGATAGCGG+AGG | + | chr4_3:43596586-43596605 | Msa0642180:CDS | 50.0% |
| TGGTGGAGACCGTAACGTAA+CGG | + | chr4_3:43597003-43597022 | Msa0642180:CDS | 50.0% | |
| !! | GTTTTGGCAGCATGGACAAG+TGG | - | chr4_3:43597135-43597154 | None:intergenic | 50.0% |
| GAAGTGTGAGCCTCAGACTC+TGG | - | chr4_3:43596102-43596121 | None:intergenic | 55.0% | |
| TGTCCAGTGCAAAACTCCGG+CGG | + | chr4_3:43596405-43596424 | Msa0642180:CDS | 55.0% | |
| TTCCTGTCCTGGACAAGGTC+CGG | - | chr4_3:43596443-43596462 | None:intergenic | 55.0% | |
| GGCAATGACTACGTTGCCAC+CGG | + | chr4_3:43596469-43596488 | Msa0642180:CDS | 55.0% | |
| ! | GAGTAACTTCGTCGGCTGTC+TGG | - | chr4_3:43596504-43596523 | None:intergenic | 55.0% |
| !! | GTTACGATGATGGGCAGCCT+TGG | + | chr4_3:43596530-43596549 | Msa0642180:CDS | 55.0% |
| CCTTCGACGGCAAGATTGGA+CGG | - | chr4_3:43596640-43596659 | None:intergenic | 55.0% | |
| GCTTCCTTCGACGGCAAGAT+TGG | - | chr4_3:43596644-43596663 | None:intergenic | 55.0% | |
| GAAGTGTGAGCCTCAGACTC+TGG | - | chr4_3:43596102-43596121 | None:intergenic | 55.0% | |
| TGTCCAGTGCAAAACTCCGG+CGG | + | chr4_3:43596405-43596424 | Msa0642180:CDS | 55.0% | |
| TTCCTGTCCTGGACAAGGTC+CGG | - | chr4_3:43596443-43596462 | None:intergenic | 55.0% | |
| GGCAATGACTACGTTGCCAC+CGG | + | chr4_3:43596469-43596488 | Msa0642180:CDS | 55.0% | |
| ! | GAGTAACTTCGTCGGCTGTC+TGG | - | chr4_3:43596504-43596523 | None:intergenic | 55.0% |
| !! | GTTACGATGATGGGCAGCCT+TGG | + | chr4_3:43596530-43596549 | Msa0642180:CDS | 55.0% |
| CCTTCGACGGCAAGATTGGA+CGG | - | chr4_3:43596640-43596659 | None:intergenic | 55.0% | |
| GCTTCCTTCGACGGCAAGAT+TGG | - | chr4_3:43596644-43596663 | None:intergenic | 55.0% | |
| CTCGCCGGTGAGTTTCCACA+TGG | - | chr4_3:43596334-43596353 | None:intergenic | 60.0% | |
| CATGTGGAAACTCACCGGCG+AGG | + | chr4_3:43596332-43596351 | Msa0642180:CDS | 60.0% | |
| GACTATGCCGGACCTTGTCC+AGG | + | chr4_3:43596433-43596452 | Msa0642180:CDS | 60.0% | |
| CACGCTTCCTGTCCTGGACA+AGG | - | chr4_3:43596448-43596467 | None:intergenic | 60.0% | |
| ! | TGTCCAGGACAGGAAGCGTG+CGG | + | chr4_3:43596448-43596467 | Msa0642180:CDS | 60.0% |
| CCGTCCAATCTTGCCGTCGA+AGG | + | chr4_3:43596637-43596656 | Msa0642180:CDS | 60.0% | |
| CTCGCCGGTGAGTTTCCACA+TGG | - | chr4_3:43596334-43596353 | None:intergenic | 60.0% | |
| CATGTGGAAACTCACCGGCG+AGG | + | chr4_3:43596332-43596351 | Msa0642180:CDS | 60.0% | |
| GACTATGCCGGACCTTGTCC+AGG | + | chr4_3:43596433-43596452 | Msa0642180:CDS | 60.0% | |
| CACGCTTCCTGTCCTGGACA+AGG | - | chr4_3:43596448-43596467 | None:intergenic | 60.0% | |
| ! | TGTCCAGGACAGGAAGCGTG+CGG | + | chr4_3:43596448-43596467 | Msa0642180:CDS | 60.0% |
| CCGTCCAATCTTGCCGTCGA+AGG | + | chr4_3:43596637-43596656 | Msa0642180:CDS | 60.0% | |
| ! | TGGCCGCCGGAGTTTTGCAC+TGG | - | chr4_3:43596411-43596430 | None:intergenic | 65.0% |
| CCGGCATAGTCTTTGGCCGC+CGG | - | chr4_3:43596424-43596443 | None:intergenic | 65.0% | |
| CCGGCGGCCAAAGACTATGC+CGG | + | chr4_3:43596421-43596440 | Msa0642180:CDS | 65.0% | |
| TGCCGGACCTTGTCCAGGAC+AGG | + | chr4_3:43596438-43596457 | Msa0642180:CDS | 65.0% | |
| TTGCCGCACGCTTCCTGTCC+TGG | - | chr4_3:43596454-43596473 | None:intergenic | 65.0% | |
| ! | TGGCCGCCGGAGTTTTGCAC+TGG | - | chr4_3:43596411-43596430 | None:intergenic | 65.0% |
| CCGGCATAGTCTTTGGCCGC+CGG | - | chr4_3:43596424-43596443 | None:intergenic | 65.0% | |
| CCGGCGGCCAAAGACTATGC+CGG | + | chr4_3:43596421-43596440 | Msa0642180:CDS | 65.0% | |
| TGCCGGACCTTGTCCAGGAC+AGG | + | chr4_3:43596438-43596457 | Msa0642180:CDS | 65.0% | |
| TTGCCGCACGCTTCCTGTCC+TGG | - | chr4_3:43596454-43596473 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 43596078 | 43597320 | 43596078 | ID=Msa0642180;Name=Msa0642180 |
| chr4_3 | mRNA | 43596078 | 43597320 | 43596078 | ID=Msa0642180-mRNA-1;Parent=Msa0642180;Name=Msa0642180-mRNA-1;_AED=0.01;_eAED=0.01;_QI=224|1|1|1|1|1|2|212|196 |
| chr4_3 | exon | 43596078 | 43596704 | 43596078 | ID=Msa0642180-mRNA-1:exon:9893;Parent=Msa0642180-mRNA-1 |
| chr4_3 | exon | 43596921 | 43597320 | 43596921 | ID=Msa0642180-mRNA-1:exon:9894;Parent=Msa0642180-mRNA-1 |
| chr4_3 | five_prime_UTR | 43596078 | 43596301 | 43596078 | ID=Msa0642180-mRNA-1:five_prime_utr;Parent=Msa0642180-mRNA-1 |
| chr4_3 | CDS | 43596302 | 43596704 | 43596302 | ID=Msa0642180-mRNA-1:cds;Parent=Msa0642180-mRNA-1 |
| chr4_3 | CDS | 43596921 | 43597108 | 43596921 | ID=Msa0642180-mRNA-1:cds;Parent=Msa0642180-mRNA-1 |
| chr4_3 | three_prime_UTR | 43597109 | 43597320 | 43597109 | ID=Msa0642180-mRNA-1:three_prime_utr;Parent=Msa0642180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
