Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659600 | XP_003630362.1 | 94.360 | 656 | 20 | 4 | 1 | 655 | 1 | 640 | 0.0 | 1225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659600 | sp|Q8LLE5|FPP_SOLLC | 44.891 | 597 | 257 | 9 | 100 | 650 | 1 | 571 | 4.91e-139 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659600 | G7LFP4 | 94.360 | 656 | 20 | 4 | 1 | 655 | 1 | 640 | 0.0 | 1225 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002540 | Msa0659600 | 0.801675 | 8.049167e-49 | -8.615850e-47 |
| Msa0029540 | Msa0659600 | -0.804941 | 1.696572e-49 | -8.615850e-47 |
| Msa0030280 | Msa0659600 | 0.818462 | 1.935608e-52 | -8.615850e-47 |
| Msa0057710 | Msa0659600 | 0.803106 | 4.083879e-49 | -8.615850e-47 |
| Msa0076000 | Msa0659600 | 0.814193 | 1.744748e-51 | -8.615850e-47 |
| Msa0077880 | Msa0659600 | 0.824890 | 6.317074e-54 | -8.615850e-47 |
| Msa0094010 | Msa0659600 | 0.802635 | 5.108826e-49 | -8.615850e-47 |
| Msa0105420 | Msa0659600 | 0.803433 | 3.494223e-49 | -8.615850e-47 |
| Msa0619470 | Msa0659600 | 0.936689 | 1.161010e-97 | -8.615850e-47 |
| Msa0619510 | Msa0659600 | 0.942530 | 6.105397e-102 | -8.615850e-47 |
| Msa0628890 | Msa0659600 | 0.807086 | 6.000713e-50 | -8.615850e-47 |
| Msa0659600 | Msa0664760 | 0.810918 | 9.074240e-51 | -8.615850e-47 |
| Msa0659600 | Msa0684500 | 0.823414 | 1.402912e-53 | -8.615850e-47 |
| Msa0659600 | Msa0731270 | 0.812257 | 4.644518e-51 | -8.615850e-47 |
| Msa0659600 | Msa0735620 | -0.813890 | 2.035222e-51 | -8.615850e-47 |
| Msa0659600 | Msa0760380 | 0.800606 | 1.332179e-48 | -8.615850e-47 |
| Msa0659600 | Msa0771280 | 0.807259 | 5.516559e-50 | -8.615850e-47 |
| Msa0659600 | Msa0848530 | 0.812184 | 4.816969e-51 | -8.615850e-47 |
| Msa0659600 | Msa0850960 | 0.822602 | 2.170040e-53 | -8.615850e-47 |
| Msa0659600 | Msa0864010 | 0.800450 | 1.433316e-48 | -8.615850e-47 |
| Msa0659600 | Msa0881030 | 0.812264 | 4.626351e-51 | -8.615850e-47 |
| Msa0659600 | Msa0947530 | -0.802680 | 5.001460e-49 | -8.615850e-47 |
| Msa0659600 | Msa0993530 | 0.810437 | 1.153299e-50 | -8.615850e-47 |
| Msa0659600 | Msa1022970 | 0.820426 | 6.904007e-53 | -8.615850e-47 |
| Msa0659600 | Msa1150500 | 0.822761 | 1.992668e-53 | -8.615850e-47 |
| Msa0659600 | Msa1152510 | 0.800035 | 1.740854e-48 | -8.615850e-47 |
| Msa0659600 | Msa1198530 | 0.803251 | 3.811959e-49 | -8.615850e-47 |
| Msa0659600 | Msa1208890 | -0.807540 | 4.808612e-50 | -8.615850e-47 |
| Msa0659600 | Msa1249920 | 0.810196 | 1.299964e-50 | -8.615850e-47 |
| Msa0659600 | Msa1311960 | 0.807131 | 5.872397e-50 | -8.615850e-47 |
| Msa0659600 | Msa1343070 | 0.811855 | 5.683008e-51 | -8.615850e-47 |
| Msa0659600 | Msa1371430 | 0.816671 | 4.903652e-52 | -8.615850e-47 |
| Msa0659600 | Msa1415640 | 0.810631 | 1.047356e-50 | -8.615850e-47 |
| Msa0659600 | Msa1439960 | 0.806179 | 9.328887e-50 | -8.615850e-47 |
| Msa0124340 | Msa0659600 | 0.829729 | 4.372592e-55 | -8.615850e-47 |
| Msa0138970 | Msa0659600 | -0.816060 | 6.716783e-52 | -8.615850e-47 |
| Msa0152840 | Msa0659600 | 0.810893 | 9.191265e-51 | -8.615850e-47 |
| Msa0170410 | Msa0659600 | 0.807248 | 5.544996e-50 | -8.615850e-47 |
| Msa0222920 | Msa0659600 | 0.816443 | 5.515120e-52 | -8.615850e-47 |
| Msa0227400 | Msa0659600 | 0.816091 | 6.611608e-52 | -8.615850e-47 |
| Msa0423900 | Msa0659600 | 0.804064 | 2.584838e-49 | -8.615850e-47 |
| Msa0432770 | Msa0659600 | 0.802244 | 6.151092e-49 | -8.615850e-47 |
| Msa0469910 | Msa0659600 | -0.817328 | 3.491108e-52 | -8.615850e-47 |
| Msa0294150 | Msa0659600 | 0.804179 | 2.445509e-49 | -8.615850e-47 |
| Msa0328210 | Msa0659600 | 0.803741 | 3.015997e-49 | -8.615850e-47 |
| Msa0360990 | Msa0659600 | 0.806580 | 7.676565e-50 | -8.615850e-47 |
| Msa0546540 | Msa0659600 | 0.809991 | 1.438804e-50 | -8.615850e-47 |
| Msa0548620 | Msa0659600 | 0.806842 | 6.758869e-50 | -8.615850e-47 |
| Msa0576890 | Msa0659600 | 0.803360 | 3.617572e-49 | -8.615850e-47 |
| Msa0578090 | Msa0659600 | 0.812423 | 4.272161e-51 | -8.615850e-47 |
| Msa0585900 | Msa0659600 | 0.832736 | 7.975618e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659600 | MtrunA17_Chr8g0384881 | 94.360 | 656 | 20 | 4 | 1 | 655 | 1 | 640 | 0.0 | 1225 |
| Msa0659600 | MtrunA17_Chr3g0130811 | 62.863 | 482 | 140 | 5 | 49 | 511 | 31 | 492 | 3.21e-179 | 526 |
| Msa0659600 | MtrunA17_Chr3g0130811 | 56.371 | 259 | 105 | 4 | 395 | 646 | 466 | 723 | 1.22e-75 | 256 |
| Msa0659600 | MtrunA17_Chr1g0159951 | 42.044 | 597 | 251 | 9 | 2 | 523 | 3 | 579 | 1.62e-119 | 375 |
| Msa0659600 | MtrunA17_Chr1g0159951 | 35.426 | 223 | 83 | 6 | 468 | 653 | 629 | 827 | 1.35e-20 | 96.7 |
| Msa0659600 | MtrunA17_Chr3g0142411 | 37.578 | 322 | 159 | 6 | 1 | 284 | 1 | 318 | 2.44e-43 | 167 |
| Msa0659600 | MtrunA17_Chr5g0405291 | 34.202 | 307 | 171 | 4 | 1 | 284 | 1 | 299 | 2.84e-38 | 151 |
| Msa0659600 | MtrunA17_Chr1g0156371 | 37.304 | 319 | 145 | 9 | 1 | 284 | 1 | 299 | 4.98e-38 | 151 |
| Msa0659600 | MtrunA17_Chr4g0053121 | 35.082 | 305 | 119 | 7 | 1 | 276 | 1 | 255 | 1.26e-34 | 141 |
| Msa0659600 | MtrunA17_Chr5g0401911 | 32.071 | 396 | 184 | 11 | 1 | 368 | 1 | 339 | 9.62e-33 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659600 | AT3G05270.3 | 41.829 | 667 | 259 | 12 | 1 | 590 | 1 | 615 | 3.78e-132 | 402 |
| Msa0659600 | AT3G05270.2 | 41.829 | 667 | 259 | 12 | 1 | 590 | 1 | 615 | 3.78e-132 | 402 |
| Msa0659600 | AT3G05270.1 | 41.829 | 667 | 259 | 12 | 1 | 590 | 1 | 615 | 3.78e-132 | 402 |
| Msa0659600 | AT1G21810.3 | 37.168 | 565 | 253 | 15 | 97 | 594 | 13 | 542 | 4.69e-77 | 258 |
| Msa0659600 | AT1G21810.1 | 37.168 | 565 | 253 | 15 | 97 | 594 | 13 | 542 | 4.69e-77 | 258 |
| Msa0659600 | AT1G77580.1 | 47.812 | 320 | 133 | 5 | 83 | 401 | 28 | 314 | 2.36e-75 | 254 |
| Msa0659600 | AT1G77580.4 | 47.812 | 320 | 133 | 5 | 83 | 401 | 28 | 314 | 3.08e-74 | 253 |
| Msa0659600 | AT1G77580.4 | 32.281 | 285 | 139 | 6 | 391 | 649 | 482 | 738 | 7.34e-20 | 94.7 |
| Msa0659600 | AT1G77580.2 | 47.812 | 320 | 133 | 5 | 83 | 401 | 62 | 348 | 4.21e-74 | 254 |
| Msa0659600 | AT1G77580.2 | 32.281 | 285 | 139 | 6 | 391 | 649 | 516 | 772 | 7.60e-20 | 94.7 |
| Msa0659600 | AT1G77580.3 | 47.812 | 320 | 133 | 5 | 83 | 401 | 62 | 348 | 4.21e-74 | 254 |
| Msa0659600 | AT1G77580.3 | 32.281 | 285 | 139 | 6 | 391 | 649 | 516 | 772 | 7.60e-20 | 94.7 |
| Msa0659600 | AT1G19835.6 | 38.264 | 311 | 143 | 7 | 1 | 284 | 1 | 289 | 9.20e-45 | 172 |
| Msa0659600 | AT1G19835.5 | 38.264 | 311 | 143 | 7 | 1 | 284 | 1 | 289 | 9.20e-45 | 172 |
| Msa0659600 | AT1G19835.3 | 38.264 | 311 | 143 | 7 | 1 | 284 | 1 | 289 | 9.20e-45 | 172 |
| Msa0659600 | AT1G19835.1 | 38.264 | 311 | 143 | 7 | 1 | 284 | 1 | 289 | 9.20e-45 | 172 |
| Msa0659600 | AT1G19835.4 | 38.264 | 311 | 143 | 7 | 1 | 284 | 1 | 289 | 9.20e-45 | 172 |
| Msa0659600 | AT1G19835.2 | 38.264 | 311 | 143 | 7 | 1 | 284 | 1 | 289 | 9.20e-45 | 172 |
| Msa0659600 | AT1G21810.2 | 33.411 | 431 | 208 | 12 | 229 | 594 | 3 | 419 | 2.49e-40 | 155 |
| Msa0659600 | AT1G47900.3 | 34.503 | 342 | 167 | 6 | 1 | 286 | 1 | 341 | 2.03e-39 | 156 |
| Msa0659600 | AT1G47900.1 | 34.503 | 342 | 167 | 6 | 1 | 286 | 1 | 341 | 2.03e-39 | 156 |
| Msa0659600 | AT1G47900.2 | 34.503 | 342 | 167 | 6 | 1 | 286 | 1 | 341 | 2.49e-39 | 155 |
| Msa0659600 | AT4G36120.2 | 34.591 | 318 | 159 | 6 | 1 | 286 | 1 | 301 | 1.62e-36 | 147 |
| Msa0659600 | AT4G36120.1 | 34.591 | 318 | 159 | 6 | 1 | 286 | 1 | 301 | 1.62e-36 | 147 |
| Msa0659600 | AT2G23360.1 | 37.624 | 202 | 103 | 5 | 106 | 284 | 51 | 252 | 1.04e-21 | 100 |
Find 127 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAAGACATTCTATAATT+TGG | 0.160369 | 4_3:+69979807 | None:intergenic |
| CTGCTCACACTCTTGCTTCT+TGG | 0.211444 | 4_3:+69980024 | None:intergenic |
| TCTCTCAAGTTCGAATCTTC+TGG | 0.215588 | 4_3:+69981905 | None:intergenic |
| AAGGCTGAGTTGTAAATAAA+TGG | 0.243774 | 4_3:-69979963 | Msa0659600:three_prime_UTR |
| AACAGCTAGTAAGCAAAATT+TGG | 0.251696 | 4_3:-69981691 | Msa0659600:CDS |
| CTGCTTTACCATGTCTTCTT+TGG | 0.253352 | 4_3:+69982616 | None:intergenic |
| CATTCATATCATATACTCTT+TGG | 0.258300 | 4_3:-69979933 | Msa0659600:three_prime_UTR |
| TTCAAGCTTAGCAACCTTCT+TGG | 0.263795 | 4_3:+69981662 | None:intergenic |
| CTCAACTATCTCCTTTGTTT+TGG | 0.264388 | 4_3:+69981044 | None:intergenic |
| CGGCTTCCACTTTCTGTATC+TGG | 0.277252 | 4_3:+69981351 | None:intergenic |
| TGAGTTTATTGAATCTCTTT+TGG | 0.286597 | 4_3:+69980092 | None:intergenic |
| GGAAAAGAAGCTGGAGAAAA+TGG | 0.291680 | 4_3:-69981232 | Msa0659600:CDS |
| CTGATTTCTCGAGCTGCATT+TGG | 0.306496 | 4_3:+69981169 | None:intergenic |
| CAAGAAACGTGTAAAATAAT+AGG | 0.313552 | 4_3:-69984314 | Msa0659600:five_prime_UTR |
| AGTGGAAGCCGTTATGTTAA+TGG | 0.328560 | 4_3:-69981339 | Msa0659600:CDS |
| ATCATTTGAGGGAGTGAGTT+AGG | 0.330486 | 4_3:-69983657 | Msa0659600:five_prime_UTR |
| ATTCTTGAATTGATCAAATT+CGG | 0.336313 | 4_3:+69981464 | None:intergenic |
| TCCAGGCGAGACGGAGAGTT+CGG | 0.348200 | 4_3:-69983539 | Msa0659600:CDS |
| GAGAAAAGCCGTAATGGATT+TGG | 0.355781 | 4_3:-69980057 | Msa0659600:CDS |
| GACTTGAGGAACTAGAATTC+AGG | 0.356240 | 4_3:-69981749 | Msa0659600:CDS |
| GGTGTACTAACTTCTTCAAT+TGG | 0.366789 | 4_3:+69982716 | None:intergenic |
| CATTTAATGTGAATGATAAT+AGG | 0.372447 | 4_3:-69981602 | Msa0659600:CDS |
| AGTTATTTGCCACAGCTTCA+TGG | 0.375858 | 4_3:+69981943 | None:intergenic |
| CCCGAACTCTCCGTCTCGCC+TGG | 0.382873 | 4_3:+69983538 | None:intergenic |
| GATTGAAAAGAATGCCGAAT+TGG | 0.383971 | 4_3:-69981253 | Msa0659600:CDS |
| AGGTACAATGGAAGCTGAAA+TGG | 0.392441 | 4_3:-69981283 | Msa0659600:CDS |
| GCTCTTGCACTTCTCTGGCT+TGG | 0.397210 | 4_3:+69981973 | None:intergenic |
| ACACAACAAAGTCCCCAAAA+AGG | 0.401435 | 4_3:-69980156 | Msa0659600:CDS |
| TGTTATACTTTGAAGAGATT+TGG | 0.401655 | 4_3:+69984491 | None:intergenic |
| GAATCTCTTCCTCCAATGAA+TGG | 0.402374 | 4_3:+69980971 | None:intergenic |
| TACTAGCTGTTTCAGCAGCT+TGG | 0.405239 | 4_3:+69981703 | None:intergenic |
| GGTGACTAACTCGGTCTTCA+AGG | 0.409043 | 4_3:+69982033 | None:intergenic |
| CGAATTAGCTGCAGCTCTGT+TGG | 0.410377 | 4_3:-69982648 | Msa0659600:CDS |
| TATAGATAGTTACATAACTT+TGG | 0.417788 | 4_3:+69979893 | None:intergenic |
| TTTCTGCAATGTGTAGTAGA+AGG | 0.418956 | 4_3:-69984172 | Msa0659600:intron |
| TGAACTTACCAAATCCATTA+CGG | 0.432010 | 4_3:+69980049 | None:intergenic |
| TTCTTTCTCTCCCTTGCACA+TGG | 0.433055 | 4_3:-69984412 | Msa0659600:five_prime_UTR |
| TCGCGATTTGAAGTCAAAAC+AGG | 0.434769 | 4_3:-69980821 | Msa0659600:intron |
| CCAGGCGAGACGGAGAGTTC+GGG | 0.435938 | 4_3:-69983538 | Msa0659600:CDS |
| TTCAATCAAGAGCAGGAAGT+TGG | 0.455060 | 4_3:-69980920 | Msa0659600:CDS |
| ATCTGAAATGTTATCTGTAA+AGG | 0.458369 | 4_3:+69981548 | None:intergenic |
| CTAACTTCTTCAATTGGTGC+AGG | 0.462359 | 4_3:+69982722 | None:intergenic |
| ACCGAGTTAGTCACCTTGAT+GGG | 0.462981 | 4_3:-69982025 | Msa0659600:CDS |
| TGGACAGGAGGAGTTGGTTA+TGG | 0.464689 | 4_3:-69983585 | Msa0659600:CDS |
| GTTGAAGTCTCTTGCAACAT+TGG | 0.467526 | 4_3:-69980232 | Msa0659600:CDS |
| CATGGATGATTTCCTTGAGA+TGG | 0.470382 | 4_3:-69981391 | Msa0659600:CDS |
| GCTGCCTCATACACTCTTTG+AGG | 0.477884 | 4_3:+69982000 | None:intergenic |
| GATAAGAGCAGCAGAATTGA+AGG | 0.478240 | 4_3:-69981139 | Msa0659600:CDS |
| TGTTAATGGAGGACGAGTAT+TGG | 0.478665 | 4_3:-69981325 | Msa0659600:CDS |
| GAGACTTGATGCTGTGGAGA+AGG | 0.483646 | 4_3:-69981805 | Msa0659600:CDS |
| CTGCTTTCCAAGAGATGCAA+TGG | 0.484799 | 4_3:+69980254 | None:intergenic |
| GACCGAGTTAGTCACCTTGA+TGG | 0.485370 | 4_3:-69982026 | Msa0659600:CDS |
| TGCCGAATTGGAAAAGAAGC+TGG | 0.488229 | 4_3:-69981241 | Msa0659600:CDS |
| GTTGCTGAAGAAGCTGTCTC+AGG | 0.493553 | 4_3:-69982584 | Msa0659600:intron |
| GTATTGGATCAATCTATTGT+TGG | 0.494117 | 4_3:-69981309 | Msa0659600:CDS |
| GACAACGAGAGCAATTATTC+CGG | 0.494681 | 4_3:+69983057 | None:intergenic |
| AAGTCATCGGAGAAAAGTCC+AGG | 0.496717 | 4_3:-69983556 | Msa0659600:CDS |
| GAAAAGGAGACAAGATGATA+AGG | 0.497005 | 4_3:-69979982 | Msa0659600:three_prime_UTR |
| GGCAAATAACTCACATGACT+CGG | 0.497487 | 4_3:-69981931 | Msa0659600:CDS |
| TTGTAGGTGATATCATTTGA+GGG | 0.500207 | 4_3:-69983668 | Msa0659600:intron |
| CATCTATAATAACAGGATAC+CGG | 0.500342 | 4_3:-69983076 | Msa0659600:intron |
| GGTGATAGAGTAGCTTGGAT+TGG | 0.502409 | 4_3:+69982761 | None:intergenic |
| TTTGTAGGTGATATCATTTG+AGG | 0.504114 | 4_3:-69983669 | Msa0659600:intron |
| CTGCCTCATACACTCTTTGA+GGG | 0.505138 | 4_3:+69982001 | None:intergenic |
| AGCTCGAGAAATCAGAGAAT+CGG | 0.507513 | 4_3:-69981161 | Msa0659600:CDS |
| CAAGAAGCAAGAGTGTGAGC+AGG | 0.509068 | 4_3:-69980023 | Msa0659600:CDS |
| GGGCCCTCAAAGAGTGTATG+AGG | 0.511371 | 4_3:-69982004 | Msa0659600:CDS |
| AGAATTCAGGATTGCAGAGA+GGG | 0.513958 | 4_3:-69981736 | Msa0659600:CDS |
| ACTTCACAAGTTAACTCCAT+AGG | 0.515278 | 4_3:+69980180 | None:intergenic |
| AGATAAACTTGATGTAGAGA+TGG | 0.518264 | 4_3:-69981205 | Msa0659600:CDS |
| TCAGGACAAAGAACTTGCAT+TGG | 0.521630 | 4_3:-69980307 | Msa0659600:intron |
| CTCAAGTTCAGCAAGATGCC+AGG | 0.522890 | 4_3:-69980867 | Msa0659600:CDS |
| ATGATTTCCTTGAGATGGAA+AGG | 0.523962 | 4_3:-69981386 | Msa0659600:CDS |
| ACTCATGAGAAAAGCCGTAA+TGG | 0.524338 | 4_3:-69980063 | Msa0659600:CDS |
| ATTGGAGGAAGAGATTCAAA+AGG | 0.526916 | 4_3:-69980965 | Msa0659600:CDS |
| GATAAACTTGATGTAGAGAT+GGG | 0.528053 | 4_3:-69981204 | Msa0659600:CDS |
| TTCAACTGAGATCAATCTCA+TGG | 0.530613 | 4_3:-69981409 | Msa0659600:CDS |
| TCGTTGAAAATCATGTGAAA+AGG | 0.530655 | 4_3:-69979998 | Msa0659600:exon |
| ATCAAGTCTCCTCTGAAGAT+CGG | 0.535787 | 4_3:+69981818 | None:intergenic |
| TTTAAATGGACAGGAGGAGT+TGG | 0.537649 | 4_3:-69983591 | Msa0659600:exon |
| AAGAAGCAAGAGTGTGAGCA+GGG | 0.538699 | 4_3:-69980022 | Msa0659600:CDS |
| CTCGTCCTCCATTAACATAA+CGG | 0.539926 | 4_3:+69981331 | None:intergenic |
| TTTACAGATAACATTTCAGA+TGG | 0.540438 | 4_3:-69981546 | Msa0659600:CDS |
| GAGAAAAGTTGCTGAGCTTG+AGG | 0.541808 | 4_3:-69981886 | Msa0659600:CDS |
| TGATTCAGACAACAGCCCTA+TGG | 0.543080 | 4_3:-69980196 | Msa0659600:CDS |
| CTTCACAAGTTAACTCCATA+GGG | 0.543569 | 4_3:+69980181 | None:intergenic |
| GCAGGCTTAGATGTGACCTC+TGG | 0.546710 | 4_3:+69982740 | None:intergenic |
| CTGAGAATTCAATCAAGAGC+AGG | 0.555581 | 4_3:-69980927 | Msa0659600:CDS |
| CAGCAAGCCTTTCCATCTCA+AGG | 0.558005 | 4_3:+69981379 | None:intergenic |
| ACTCTTTGAGGGCCCCATCA+AGG | 0.563213 | 4_3:+69982012 | None:intergenic |
| ACAGATAACATTTCAGATGG+TGG | 0.563408 | 4_3:-69981543 | Msa0659600:CDS |
| AAATTTGGAGAGCACCAAGA+AGG | 0.563758 | 4_3:-69981676 | Msa0659600:CDS |
| GATCAATCTATTGTTGGTCA+AGG | 0.566842 | 4_3:-69981303 | Msa0659600:CDS |
| CCCCATCAAGGTGACTAACT+CGG | 0.567534 | 4_3:+69982024 | None:intergenic |
| CTCAATATAAATTGAAGATG+CGG | 0.569123 | 4_3:+69981572 | None:intergenic |
| AATCAAGAGCAGGAAGTTGG+AGG | 0.569457 | 4_3:-69980917 | Msa0659600:CDS |
| GCTTTGCCAGATACAGAAAG+TGG | 0.578039 | 4_3:-69981357 | Msa0659600:CDS |
| GGAGAAAAGTCCAGGCGAGA+CGG | 0.589443 | 4_3:-69983548 | Msa0659600:CDS |
| TATTGTTGGTCAAGGTACAA+TGG | 0.590943 | 4_3:-69981295 | Msa0659600:CDS |
| GCATGCGTGGACCATGTGCA+AGG | 0.591031 | 4_3:+69984401 | None:intergenic |
| ATCAAGAGCAGGAAGTTGGA+GGG | 0.592927 | 4_3:-69980916 | Msa0659600:CDS |
| TAGAATTCAGGATTGCAGAG+AGG | 0.594182 | 4_3:-69981737 | Msa0659600:CDS |
| GCAAATAACTCACATGACTC+GGG | 0.598199 | 4_3:-69981930 | Msa0659600:CDS |
| TCAGAGGAGACTTGATGCTG+TGG | 0.600308 | 4_3:-69981811 | Msa0659600:CDS |
| GCTGCAAGACAGAAGAACTC+AGG | 0.602737 | 4_3:-69982056 | Msa0659600:CDS |
| ACATTGCAGAAAACGAAGAT+CGG | 0.608923 | 4_3:+69984183 | None:intergenic |
| ACTGAAAGAAACCAAAACAA+AGG | 0.609016 | 4_3:-69981055 | Msa0659600:CDS |
| ACTGAAATTTGCTCAAACTG+AGG | 0.609862 | 4_3:-69981016 | Msa0659600:CDS |
| CTATTCGCTCCGATCTTCAG+AGG | 0.616299 | 4_3:-69981827 | Msa0659600:CDS |
| CCTCTGGTGATAGAGTAGCT+TGG | 0.616609 | 4_3:+69982756 | None:intergenic |
| GAACATGAGTCAGAACAGCT+TGG | 0.617775 | 4_3:+69981501 | None:intergenic |
| GCAAAAGATCCATGAAGCTG+TGG | 0.621012 | 4_3:-69981952 | Msa0659600:CDS |
| GGCTGTTGTCTGAATCAAGT+AGG | 0.621986 | 4_3:+69980202 | None:intergenic |
| AATAATGTGTGTGTGAGAAG+AGG | 0.622912 | 4_3:+69984375 | None:intergenic |
| AATTAGTGCCAAAGAAGACA+TGG | 0.626226 | 4_3:-69982624 | Msa0659600:CDS |
| GAGTCATGGATTTCAGTCTA+CGG | 0.630257 | 4_3:+69981631 | None:intergenic |
| CATGCGTGGACCATGTGCAA+GGG | 0.631425 | 4_3:+69984402 | None:intergenic |
| CTGGGAGAAGGCTGAAAACG+AGG | 0.637297 | 4_3:-69982105 | Msa0659600:CDS |
| GTTATGGCGGAGAAAGTCAT+CGG | 0.642989 | 4_3:-69983569 | Msa0659600:CDS |
| GGAAGCCGTTATGTTAATGG+AGG | 0.654516 | 4_3:-69981336 | Msa0659600:CDS |
| TGAGCTGCAATCTCGACTTG+AGG | 0.664109 | 4_3:-69981763 | Msa0659600:CDS |
| AGATGCCAGGACTTTGCACA+AGG | 0.664420 | 4_3:-69980854 | Msa0659600:CDS |
| CCGAGTTAGTCACCTTGATG+GGG | 0.664423 | 4_3:-69982024 | Msa0659600:CDS |
| ACAGGAGGAGTTGGTTATGG+CGG | 0.665341 | 4_3:-69983582 | Msa0659600:CDS |
| TGAGAAGAGGATAGCATGCG+TGG | 0.672762 | 4_3:+69984388 | None:intergenic |
| AAAGAAGCTGGAGAAAATGG+AGG | 0.684854 | 4_3:-69981229 | Msa0659600:CDS |
| CCAAGCTACTCTATCACCAG+AGG | 0.697015 | 4_3:-69982756 | Msa0659600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTATTTTTTGAATCCT+TGG | - | chr4_3:69980162-69980181 | Msa0659600:CDS | 15.0% |
| !!! | TATTTATTTTTTGAATCCTT+GGG | - | chr4_3:69980163-69980182 | Msa0659600:CDS | 15.0% |
| !! | TGAAAACAAAACAAAATATA+AGG | + | chr4_3:69980480-69980499 | None:intergenic | 15.0% |
| !!! | TTGTTTTGTTTTCATTTTAT+TGG | - | chr4_3:69980486-69980505 | Msa0659600:intron | 15.0% |
| !!! | TACTGTTTTTCATTTTATTT+AGG | - | chr4_3:69982134-69982153 | Msa0659600:intron | 15.0% |
| !! | TTAATAACAATAAAGTGTAG+CGG | - | chr4_3:69980305-69980324 | Msa0659600:CDS | 20.0% |
| !! | ATCAGATAATAAAAAAGAGA+AGG | + | chr4_3:69980446-69980465 | None:intergenic | 20.0% |
| !!! | TATTGATTTGATGATTTTGT+AGG | - | chr4_3:69980578-69980597 | Msa0659600:intron | 20.0% |
| !! | GAGATGAAAAAAAAAATTGA+GGG | - | chr4_3:69981002-69981021 | Msa0659600:CDS | 20.0% |
| !!! | CTATTTTCATCTATAATAAC+AGG | - | chr4_3:69981179-69981198 | Msa0659600:CDS | 20.0% |
| !!! | TTTTTTTTTTCTAAGCATTC+AGG | - | chr4_3:69981385-69981404 | Msa0659600:CDS | 20.0% |
| !!! | CCTTCTTCTTTATATTTTTT+GGG | + | chr4_3:69981570-69981589 | None:intergenic | 20.0% |
| !!! | ACCTTCTTCTTTATATTTTT+TGG | + | chr4_3:69981571-69981590 | None:intergenic | 20.0% |
| !! | TAATCTACGAATTAAATATC+TGG | + | chr4_3:69981719-69981738 | None:intergenic | 20.0% |
| !! | ATCATAATCTTCTAACTTAA+TGG | - | chr4_3:69982071-69982090 | Msa0659600:CDS | 20.0% |
| !! | TCATAATCTTCTAACTTAAT+GGG | - | chr4_3:69982072-69982091 | Msa0659600:CDS | 20.0% |
| !!! | ATATCTTTTCATATATACCT+TGG | + | chr4_3:69982115-69982134 | None:intergenic | 20.0% |
| !!! | TTTTTCATTTTATTTAGGCT+GGG | - | chr4_3:69982139-69982158 | Msa0659600:intron | 20.0% |
| !! | CATTTAATGTGAATGATAAT+AGG | - | chr4_3:69982660-69982679 | Msa0659600:CDS | 20.0% |
| !! | ATTCTTGAATTGATCAAATT+CGG | + | chr4_3:69982801-69982820 | None:intergenic | 20.0% |
| !! | ATTGCAAAATACATTAAACA+CGG | + | chr4_3:69983506-69983525 | None:intergenic | 20.0% |
| !! | AATGCAATTTAATTGTAGTT+TGG | + | chr4_3:69983723-69983742 | None:intergenic | 20.0% |
| !! | ATTAAATTGCATTTGTAGTT+TGG | - | chr4_3:69983730-69983749 | Msa0659600:intron | 20.0% |
| !!! | CAGATACTAAGTTTTTTATA+TGG | + | chr4_3:69983930-69983949 | None:intergenic | 20.0% |
| !! | TATAGATAGTTACATAACTT+TGG | + | chr4_3:69984372-69984391 | None:intergenic | 20.0% |
| !!! | TGAACTTTGAAAAATTGAAA+TGG | - | chr4_3:69984404-69984423 | Msa0659600:five_prime_UTR | 20.0% |
| !! | GATAAAGACATTCTATAATT+TGG | + | chr4_3:69984458-69984477 | None:intergenic | 20.0% |
| !! | TGTTATACTTTGAAGAGATT+TGG | + | chr4_3:69979774-69979793 | None:intergenic | 25.0% |
| !!! | CTATTATTTTACACGTTTCT+TGG | + | chr4_3:69979950-69979969 | None:intergenic | 25.0% |
| ! | CAAGAAACGTGTAAAATAAT+AGG | - | chr4_3:69979948-69979967 | Msa0659600:three_prime_UTR | 25.0% |
| !!! | TTTTGTCTAATTTTGACGTA+TGG | - | chr4_3:69980277-69980296 | Msa0659600:CDS | 25.0% |
| ! | AGATAATAAAAAAGAGAAGG+TGG | + | chr4_3:69980443-69980462 | None:intergenic | 25.0% |
| ! | GAATGTGTACTAGATAATAT+GGG | - | chr4_3:69980931-69980950 | Msa0659600:CDS | 25.0% |
| !! | ATTTTCTCAAGTGAAAATCT+CGG | - | chr4_3:69980967-69980986 | Msa0659600:CDS | 25.0% |
| ! | GGAGATGAAAAAAAAAATTG+AGG | - | chr4_3:69981001-69981020 | Msa0659600:CDS | 25.0% |
| !!! | AAGAAAGTGTCTTTACTTTA+AGG | - | chr4_3:69981089-69981108 | Msa0659600:CDS | 25.0% |
| !!! | AGAAAGTGTCTTTACTTTAA+GGG | - | chr4_3:69981090-69981109 | Msa0659600:CDS | 25.0% |
| ! | AATCAGATTCATCACATTAT+TGG | + | chr4_3:69981444-69981463 | None:intergenic | 25.0% |
| ! | CCCAAAAAATATAAAGAAGA+AGG | - | chr4_3:69981567-69981586 | Msa0659600:CDS | 25.0% |
| ! | AAAATTAATTACAGCTGCAA+AGG | + | chr4_3:69981860-69981879 | None:intergenic | 25.0% |
| !!! | GTTTTTCATTTTATTTAGGC+TGG | - | chr4_3:69982138-69982157 | Msa0659600:intron | 25.0% |
| !! | ATTAAATGTTTTACGAGTCA+TGG | + | chr4_3:69982648-69982667 | None:intergenic | 25.0% |
| ! | CTCAATATAAATTGAAGATG+CGG | + | chr4_3:69982693-69982712 | None:intergenic | 25.0% |
| !! | ATCTGAAATGTTATCTGTAA+AGG | + | chr4_3:69982717-69982736 | None:intergenic | 25.0% |
| ! | TTTACAGATAACATTTCAGA+TGG | - | chr4_3:69982716-69982735 | Msa0659600:CDS | 25.0% |
| ! | TTCAAGAATAAAAAGACTAC+TGG | - | chr4_3:69982812-69982831 | Msa0659600:intron | 25.0% |
| ! | GATTTCAAAAATCCATTCAT+TGG | - | chr4_3:69983279-69983298 | Msa0659600:intron | 25.0% |
| !!! | TCAGTTTGCTAATACTTATT+TGG | - | chr4_3:69983464-69983483 | Msa0659600:intron | 25.0% |
| ! | TCATAAAAAGTAATGCTAGA+AGG | + | chr4_3:69983540-69983559 | None:intergenic | 25.0% |
| !!! | ATTCTTCAATCCTTTTTTGT+TGG | - | chr4_3:69983583-69983602 | Msa0659600:CDS | 25.0% |
| ! | ATTGTTTCAACCAACAAAAA+AGG | + | chr4_3:69983596-69983615 | None:intergenic | 25.0% |
| ! | TTTAATTGTAGTTTGGACTA+TGG | + | chr4_3:69983716-69983735 | None:intergenic | 25.0% |
| ! | GTTAAGTAATCATATTGCAT+TGG | - | chr4_3:69983895-69983914 | Msa0659600:intron | 25.0% |
| !! | GAGTTTATTGAATCTCTTTT+GGG | + | chr4_3:69984172-69984191 | None:intergenic | 25.0% |
| !! | TGAGTTTATTGAATCTCTTT+TGG | + | chr4_3:69984173-69984192 | None:intergenic | 25.0% |
| ! | CATTCATATCATATACTCTT+TGG | - | chr4_3:69984329-69984348 | Msa0659600:five_prime_UTR | 25.0% |
| !!! | TATTTTTTGAATCCTTGGGA+TGG | - | chr4_3:69980167-69980186 | Msa0659600:CDS | 30.0% |
| TTCAAAGCAGTATCCTTATT+TGG | - | chr4_3:69980337-69980356 | Msa0659600:intron | 30.0% | |
| ! | TCAAAGCAGTATCCTTATTT+GGG | - | chr4_3:69980338-69980357 | Msa0659600:intron | 30.0% |
| !!! | ATTTTGAAGCTTCCCAAATA+AGG | + | chr4_3:69980353-69980372 | None:intergenic | 30.0% |
| TTATTTGGGAAGCTTCAAAA+TGG | - | chr4_3:69980352-69980371 | Msa0659600:intron | 30.0% | |
| TTTGTAGGTGATATCATTTG+AGG | - | chr4_3:69980593-69980612 | Msa0659600:intron | 30.0% | |
| TTGTAGGTGATATCATTTGA+GGG | - | chr4_3:69980594-69980613 | Msa0659600:intron | 30.0% | |
| !!! | GTTTTTGGCTGTGTTTTAAA+TGG | - | chr4_3:69980657-69980676 | Msa0659600:intron | 30.0% |
| ! | AGAAAGATTTTCTGATGAAC+AGG | - | chr4_3:69980765-69980784 | Msa0659600:intron | 30.0% |
| AACATACATGCAGTCAAAAA+TGG | + | chr4_3:69980825-69980844 | None:intergenic | 30.0% | |
| GGAATGTGTACTAGATAATA+TGG | - | chr4_3:69980930-69980949 | Msa0659600:CDS | 30.0% | |
| ! | GAGATTTTCACTTGAGAAAA+TGG | + | chr4_3:69980968-69980987 | None:intergenic | 30.0% |
| !! | GAAAGTGTCTTTACTTTAAG+GGG | - | chr4_3:69981091-69981110 | Msa0659600:CDS | 30.0% |
| CATCTATAATAACAGGATAC+CGG | - | chr4_3:69981186-69981205 | Msa0659600:CDS | 30.0% | |
| AACTATCTCAAGTTACAGTA+GGG | + | chr4_3:69981230-69981249 | None:intergenic | 30.0% | |
| AAACTATCTCAAGTTACAGT+AGG | + | chr4_3:69981231-69981250 | None:intergenic | 30.0% | |
| ! | GAGATAGTTTGTAAATGTCT+AGG | - | chr4_3:69981241-69981260 | Msa0659600:CDS | 30.0% |
| TGAAAACAATGGTTATTGCT+CGG | - | chr4_3:69981269-69981288 | Msa0659600:CDS | 30.0% | |
| TATGTTGTAATGAATCTGCT+CGG | - | chr4_3:69981410-69981429 | Msa0659600:CDS | 30.0% | |
| GTATATCAATAAATTTGCCC+TGG | - | chr4_3:69981799-69981818 | Msa0659600:CDS | 30.0% | |
| AAAACTTATCTACCAAACCA+GGG | + | chr4_3:69981819-69981838 | None:intergenic | 30.0% | |
| AAAAACTTATCTACCAAACC+AGG | + | chr4_3:69981820-69981839 | None:intergenic | 30.0% | |
| AAGGTAAGAAAAATGAACCA+TGG | + | chr4_3:69982034-69982053 | None:intergenic | 30.0% | |
| !! | ATGGTTCATTTTTCTTACCT+TGG | - | chr4_3:69982033-69982052 | Msa0659600:CDS | 30.0% |
| !! | TGGTTCATTTTTCTTACCTT+GGG | - | chr4_3:69982034-69982053 | Msa0659600:CDS | 30.0% |
| GAAGATTATGATGATAGTCA+TGG | + | chr4_3:69982063-69982082 | None:intergenic | 30.0% | |
| TTTCACAGAAGTTTAAACCA+AGG | - | chr4_3:69982095-69982114 | Msa0659600:CDS | 30.0% | |
| AACAGCTAGTAAGCAAAATT+TGG | - | chr4_3:69982571-69982590 | Msa0659600:intron | 30.0% | |
| GTATTGGATCAATCTATTGT+TGG | - | chr4_3:69982953-69982972 | Msa0659600:intron | 30.0% | |
| AGATAAACTTGATGTAGAGA+TGG | - | chr4_3:69983057-69983076 | Msa0659600:CDS | 30.0% | |
| GATAAACTTGATGTAGAGAT+GGG | - | chr4_3:69983058-69983077 | Msa0659600:CDS | 30.0% | |
| ACTGAAAGAAACCAAAACAA+AGG | - | chr4_3:69983207-69983226 | Msa0659600:intron | 30.0% | |
| TTCAAAAATCCATTCATTGG+AGG | - | chr4_3:69983282-69983301 | Msa0659600:intron | 30.0% | |
| TCATATAAACAGCAACACAA+AGG | + | chr4_3:69983791-69983810 | None:intergenic | 30.0% | |
| AACTGCTATTACTGGTATTT+AGG | + | chr4_3:69983878-69983897 | None:intergenic | 30.0% | |
| GATTACTTAACTGCTATTAC+TGG | + | chr4_3:69983886-69983905 | None:intergenic | 30.0% | |
| !! | AACTTAGTATCTGCTATTTC+AGG | - | chr4_3:69983937-69983956 | Msa0659600:intron | 30.0% |
| ! | AATTTTTCACCTCCTTTTTG+GGG | + | chr4_3:69984121-69984140 | None:intergenic | 30.0% |
| ! | CAATTTTTCACCTCCTTTTT+GGG | + | chr4_3:69984122-69984141 | None:intergenic | 30.0% |
| ! | TCAATTTTTCACCTCCTTTT+TGG | + | chr4_3:69984123-69984142 | None:intergenic | 30.0% |
| TGAACTTACCAAATCCATTA+CGG | + | chr4_3:69984216-69984235 | None:intergenic | 30.0% | |
| TCGTTGAAAATCATGTGAAA+AGG | - | chr4_3:69984264-69984283 | Msa0659600:five_prime_UTR | 30.0% | |
| AAGGCTGAGTTGTAAATAAA+TGG | - | chr4_3:69984299-69984318 | Msa0659600:five_prime_UTR | 30.0% | |
| ! | AAGACAACGAAAAAGTGCAA+TGG | + | chr4_3:69979824-69979843 | None:intergenic | 35.0% |
| AATAATGTGTGTGTGAGAAG+AGG | + | chr4_3:69979890-69979909 | None:intergenic | 35.0% | |
| ACATTGCAGAAAACGAAGAT+CGG | + | chr4_3:69980082-69980101 | None:intergenic | 35.0% | |
| TTTCTGCAATGTGTAGTAGA+AGG | - | chr4_3:69980090-69980109 | Msa0659600:CDS | 35.0% | |
| GTTGAAAGAGACATGAATGA+GGG | + | chr4_3:69980132-69980151 | None:intergenic | 35.0% | |
| AGTTGAAAGAGACATGAATG+AGG | + | chr4_3:69980133-69980152 | None:intergenic | 35.0% | |
| ATACAGAAACTCATAACCAC+TGG | + | chr4_3:69980561-69980580 | None:intergenic | 35.0% | |
| ! | AAGATTTTCTGATGAACAGG+TGG | - | chr4_3:69980768-69980787 | Msa0659600:intron | 35.0% |
| ! | CAATTTTACTCACTGTCACA+TGG | - | chr4_3:69980860-69980879 | Msa0659600:CDS | 35.0% |
| TCTTTCACAATTCAGTCTTG+TGG | - | chr4_3:69980908-69980927 | Msa0659600:CDS | 35.0% | |
| ! | CTTTCACAATTCAGTCTTGT+GGG | - | chr4_3:69980909-69980928 | Msa0659600:CDS | 35.0% |
| !! | AAAATCTCGGTGTTTGTTGA+AGG | - | chr4_3:69980980-69980999 | Msa0659600:CDS | 35.0% |
| TCTAGGCTACATGAAAACAA+TGG | - | chr4_3:69981258-69981277 | Msa0659600:CDS | 35.0% | |
| !!! | AGTTCGCTTTTTAAGCATTC+AGG | - | chr4_3:69981313-69981332 | Msa0659600:CDS | 35.0% |
| TTTGTTGCAATGAATCTGCT+CGG | - | chr4_3:69981338-69981357 | Msa0659600:CDS | 35.0% | |
| GGTGTACTAACTTCTTCAAT+TGG | + | chr4_3:69981549-69981568 | None:intergenic | 35.0% | |
| AATTAGTGCCAAAGAAGACA+TGG | - | chr4_3:69981638-69981657 | Msa0659600:CDS | 35.0% | |
| TGTCTCAGGTATTTACTGTT+TGG | - | chr4_3:69981692-69981711 | Msa0659600:CDS | 35.0% | |
| TCAATAAATTTGCCCTGGTT+TGG | - | chr4_3:69981804-69981823 | Msa0659600:CDS | 35.0% | |
| !! | ATTTTATTTAGGCTGGGAGA+AGG | - | chr4_3:69982145-69982164 | Msa0659600:intron | 35.0% |
| ACAGATAACATTTCAGATGG+TGG | - | chr4_3:69982719-69982738 | Msa0659600:CDS | 35.0% | |
| TTCAACTGAGATCAATCTCA+TGG | - | chr4_3:69982853-69982872 | Msa0659600:intron | 35.0% | |
| ATGATTTCCTTGAGATGGAA+AGG | - | chr4_3:69982876-69982895 | Msa0659600:intron | 35.0% | |
| GATCAATCTATTGTTGGTCA+AGG | - | chr4_3:69982959-69982978 | Msa0659600:intron | 35.0% | |
| TATTGTTGGTCAAGGTACAA+TGG | - | chr4_3:69982967-69982986 | Msa0659600:intron | 35.0% | |
| GATTGAAAAGAATGCCGAAT+TGG | - | chr4_3:69983009-69983028 | Msa0659600:intron | 35.0% | |
| !! | CTCAACTATCTCCTTTGTTT+TGG | + | chr4_3:69983221-69983240 | None:intergenic | 35.0% |
| ! | ACTGAAATTTGCTCAAACTG+AGG | - | chr4_3:69983246-69983265 | Msa0659600:intron | 35.0% |
| ATTGGAGGAAGAGATTCAAA+AGG | - | chr4_3:69983297-69983316 | Msa0659600:intron | 35.0% | |
| AACAGCAACACAAAGGAATT+GGG | + | chr4_3:69983784-69983803 | None:intergenic | 35.0% | |
| AAACAGCAACACAAAGGAAT+TGG | + | chr4_3:69983785-69983804 | None:intergenic | 35.0% | |
| !!! | CAAGAGATGCAATGGTTTTT+TGG | + | chr4_3:69984003-69984022 | None:intergenic | 35.0% |
| CAAAAAACCATTGCATCTCT+TGG | - | chr4_3:69984001-69984020 | Msa0659600:intron | 35.0% | |
| CTTCACAAGTTAACTCCATA+GGG | + | chr4_3:69984084-69984103 | None:intergenic | 35.0% | |
| ACTTCACAAGTTAACTCCAT+AGG | + | chr4_3:69984085-69984104 | None:intergenic | 35.0% | |
| GAAAAGGAGACAAGATGATA+AGG | - | chr4_3:69984280-69984299 | Msa0659600:five_prime_UTR | 35.0% | |
| ! | TTTTGAATCCTTGGGATGGT+AGG | - | chr4_3:69980171-69980190 | Msa0659600:CDS | 40.0% |
| TTTGGGAAGCTTCAAAATGG+AGG | - | chr4_3:69980355-69980374 | Msa0659600:intron | 40.0% | |
| ! | TAGATTTTACGCAGATCCAG+TGG | - | chr4_3:69980542-69980561 | Msa0659600:intron | 40.0% |
| ATCATTTGAGGGAGTGAGTT+AGG | - | chr4_3:69980605-69980624 | Msa0659600:intron | 40.0% | |
| !! | TGGCTGTGTTTTAAATGGAC+AGG | - | chr4_3:69980662-69980681 | Msa0659600:intron | 40.0% |
| !! | CTGTGTTTTAAATGGACAGG+AGG | - | chr4_3:69980665-69980684 | Msa0659600:intron | 40.0% |
| TTTAAATGGACAGGAGGAGT+TGG | - | chr4_3:69980671-69980690 | Msa0659600:intron | 40.0% | |
| TTACTCACTGTCACATGGTT+TGG | - | chr4_3:69980865-69980884 | Msa0659600:CDS | 40.0% | |
| TACTCACTGTCACATGGTTT+GGG | - | chr4_3:69980866-69980885 | Msa0659600:CDS | 40.0% | |
| ! | AAAAATTGAGGGCGTGAATG+TGG | - | chr4_3:69981013-69981032 | Msa0659600:CDS | 40.0% |
| TGTTGCAGACATTGTGAAAC+AGG | - | chr4_3:69981062-69981081 | Msa0659600:CDS | 40.0% | |
| GACAACGAGAGCAATTATTC+CGG | + | chr4_3:69981208-69981227 | None:intergenic | 40.0% | |
| TACCTTCACAGTTACAGCAT+GGG | + | chr4_3:69981478-69981497 | None:intergenic | 40.0% | |
| ATACCTTCACAGTTACAGCA+TGG | + | chr4_3:69981479-69981498 | None:intergenic | 40.0% | |
| CTAACTTCTTCAATTGGTGC+AGG | + | chr4_3:69981543-69981562 | None:intergenic | 40.0% | |
| CTGCTTTACCATGTCTTCTT+TGG | + | chr4_3:69981649-69981668 | None:intergenic | 40.0% | |
| ! | TGCTTCTTTTTGCTTGTCCA+TGG | - | chr4_3:69982014-69982033 | Msa0659600:CDS | 40.0% |
| AGTTATTTGCCACAGCTTCA+TGG | + | chr4_3:69982322-69982341 | None:intergenic | 40.0% | |
| GGCAAATAACTCACATGACT+CGG | - | chr4_3:69982331-69982350 | Msa0659600:intron | 40.0% | |
| GCAAATAACTCACATGACTC+GGG | - | chr4_3:69982332-69982351 | Msa0659600:intron | 40.0% | |
| TCTCTCAAGTTCGAATCTTC+TGG | + | chr4_3:69982360-69982379 | None:intergenic | 40.0% | |
| ! | ATCAAGTCTCCTCTGAAGAT+CGG | + | chr4_3:69982447-69982466 | None:intergenic | 40.0% |
| GACTTGAGGAACTAGAATTC+AGG | - | chr4_3:69982513-69982532 | Msa0659600:intron | 40.0% | |
| TAGAATTCAGGATTGCAGAG+AGG | - | chr4_3:69982525-69982544 | Msa0659600:intron | 40.0% | |
| AGAATTCAGGATTGCAGAGA+GGG | - | chr4_3:69982526-69982545 | Msa0659600:intron | 40.0% | |
| !! | AAATTTGGAGAGCACCAAGA+AGG | - | chr4_3:69982586-69982605 | Msa0659600:CDS | 40.0% |
| TTCAAGCTTAGCAACCTTCT+TGG | + | chr4_3:69982603-69982622 | None:intergenic | 40.0% | |
| GAGTCATGGATTTCAGTCTA+CGG | + | chr4_3:69982634-69982653 | None:intergenic | 40.0% | |
| CATGGATGATTTCCTTGAGA+TGG | - | chr4_3:69982871-69982890 | Msa0659600:intron | 40.0% | |
| AGTGGAAGCCGTTATGTTAA+TGG | - | chr4_3:69982923-69982942 | Msa0659600:intron | 40.0% | |
| CTCGTCCTCCATTAACATAA+CGG | + | chr4_3:69982934-69982953 | None:intergenic | 40.0% | |
| TGTTAATGGAGGACGAGTAT+TGG | - | chr4_3:69982937-69982956 | Msa0659600:intron | 40.0% | |
| AGGTACAATGGAAGCTGAAA+TGG | - | chr4_3:69982979-69982998 | Msa0659600:intron | 40.0% | |
| ! | CTCCAGCTTCTTTTCCAATT+CGG | + | chr4_3:69983026-69983045 | None:intergenic | 40.0% |
| GGAAAAGAAGCTGGAGAAAA+TGG | - | chr4_3:69983030-69983049 | Msa0659600:intron | 40.0% | |
| AAAGAAGCTGGAGAAAATGG+AGG | - | chr4_3:69983033-69983052 | Msa0659600:intron | 40.0% | |
| AGCTCGAGAAATCAGAGAAT+CGG | - | chr4_3:69983101-69983120 | Msa0659600:intron | 40.0% | |
| GATAAGAGCAGCAGAATTGA+AGG | - | chr4_3:69983123-69983142 | Msa0659600:intron | 40.0% | |
| GAATCTCTTCCTCCAATGAA+TGG | + | chr4_3:69983294-69983313 | None:intergenic | 40.0% | |
| CTGAGAATTCAATCAAGAGC+AGG | - | chr4_3:69983335-69983354 | Msa0659600:intron | 40.0% | |
| TTCAATCAAGAGCAGGAAGT+TGG | - | chr4_3:69983342-69983361 | Msa0659600:intron | 40.0% | |
| ! | ATTTTCCTTGTGCAAAGTCC+TGG | + | chr4_3:69983416-69983435 | None:intergenic | 40.0% |
| ! | TCGCGATTTGAAGTCAAAAC+AGG | - | chr4_3:69983441-69983460 | Msa0659600:intron | 40.0% |
| TGCATTTGTAGTTTGGACTC+TGG | - | chr4_3:69983737-69983756 | Msa0659600:intron | 40.0% | |
| ACAGCAACACAAAGGAATTG+GGG | + | chr4_3:69983783-69983802 | None:intergenic | 40.0% | |
| TCAGGACAAAGAACTTGCAT+TGG | - | chr4_3:69983955-69983974 | Msa0659600:intron | 40.0% | |
| GTTGAAGTCTCTTGCAACAT+TGG | - | chr4_3:69984030-69984049 | Msa0659600:intron | 40.0% | |
| ACACAACAAAGTCCCCAAAA+AGG | - | chr4_3:69984106-69984125 | Msa0659600:intron | 40.0% | |
| ACTCATGAGAAAAGCCGTAA+TGG | - | chr4_3:69984199-69984218 | Msa0659600:five_prime_UTR | 40.0% | |
| !! | GAGAAAAGCCGTAATGGATT+TGG | - | chr4_3:69984205-69984224 | Msa0659600:five_prime_UTR | 40.0% |
| TTCTTTCTCTCCCTTGCACA+TGG | - | chr4_3:69979850-69979869 | Msa0659600:three_prime_UTR | 45.0% | |
| ATTACACACCTACCATCCCA+AGG | + | chr4_3:69980182-69980201 | None:intergenic | 45.0% | |
| ! | GTTATGGCGGAGAAAGTCAT+CGG | - | chr4_3:69980693-69980712 | Msa0659600:intron | 45.0% |
| AAGTCATCGGAGAAAAGTCC+AGG | - | chr4_3:69980706-69980725 | Msa0659600:intron | 45.0% | |
| CTCGGTCTGCAAATTTCTCA+TGG | - | chr4_3:69981287-69981306 | Msa0659600:CDS | 45.0% | |
| TTCCCATGCTGTAACTGTGA+AGG | - | chr4_3:69981473-69981492 | Msa0659600:CDS | 45.0% | |
| GGTGATAGAGTAGCTTGGAT+TGG | + | chr4_3:69981504-69981523 | None:intergenic | 45.0% | |
| CTTCACAACCATCATGATCC+CGG | - | chr4_3:69981957-69981976 | Msa0659600:CDS | 45.0% | |
| TCCTAACTCCTAACGTGAAC+CGG | + | chr4_3:69981979-69981998 | None:intergenic | 45.0% | |
| ATGATAGTCATGGCTTCCCA+AGG | + | chr4_3:69982053-69982072 | None:intergenic | 45.0% | |
| ACCGAGTTAGTCACCTTGAT+GGG | - | chr4_3:69982237-69982256 | Msa0659600:intron | 45.0% | |
| CTGCCTCATACACTCTTTGA+GGG | + | chr4_3:69982264-69982283 | None:intergenic | 45.0% | |
| ! | CTTTTGCTCTTGCACTTCTC+TGG | + | chr4_3:69982297-69982316 | None:intergenic | 45.0% |
| GCAAAAGATCCATGAAGCTG+TGG | - | chr4_3:69982310-69982329 | Msa0659600:intron | 45.0% | |
| GAGAAAAGTTGCTGAGCTTG+AGG | - | chr4_3:69982376-69982395 | Msa0659600:intron | 45.0% | |
| ! | TACTAGCTGTTTCAGCAGCT+TGG | + | chr4_3:69982562-69982581 | None:intergenic | 45.0% |
| GAACATGAGTCAGAACAGCT+TGG | + | chr4_3:69982764-69982783 | None:intergenic | 45.0% | |
| GCTTTGCCAGATACAGAAAG+TGG | - | chr4_3:69982905-69982924 | Msa0659600:intron | 45.0% | |
| GGAAGCCGTTATGTTAATGG+AGG | - | chr4_3:69982926-69982945 | Msa0659600:intron | 45.0% | |
| TGCCGAATTGGAAAAGAAGC+TGG | - | chr4_3:69983021-69983040 | Msa0659600:intron | 45.0% | |
| CTGATTTCTCGAGCTGCATT+TGG | + | chr4_3:69983096-69983115 | None:intergenic | 45.0% | |
| AATCAAGAGCAGGAAGTTGG+AGG | - | chr4_3:69983345-69983364 | Msa0659600:intron | 45.0% | |
| ATCAAGAGCAGGAAGTTGGA+GGG | - | chr4_3:69983346-69983365 | Msa0659600:intron | 45.0% | |
| CAGCAACACAAAGGAATTGG+GGG | + | chr4_3:69983782-69983801 | None:intergenic | 45.0% | |
| CTGCTTTCCAAGAGATGCAA+TGG | + | chr4_3:69984011-69984030 | None:intergenic | 45.0% | |
| GGCTGTTGTCTGAATCAAGT+AGG | + | chr4_3:69984063-69984082 | None:intergenic | 45.0% | |
| TGATTCAGACAACAGCCCTA+TGG | - | chr4_3:69984066-69984085 | Msa0659600:intron | 45.0% | |
| CAACAAAGTCCCCAAAAAGG+AGG | - | chr4_3:69984109-69984128 | Msa0659600:intron | 45.0% | |
| ! | AAGAAGCAAGAGTGTGAGCA+GGG | - | chr4_3:69984240-69984259 | Msa0659600:five_prime_UTR | 45.0% |
| TGAGAAGAGGATAGCATGCG+TGG | + | chr4_3:69979877-69979896 | None:intergenic | 50.0% | |
| ! | TGGACAGGAGGAGTTGGTTA+TGG | - | chr4_3:69980677-69980696 | Msa0659600:intron | 50.0% |
| ! | ACAGGAGGAGTTGGTTATGG+CGG | - | chr4_3:69980680-69980699 | Msa0659600:intron | 50.0% |
| CTCGGTCTGCACATTCTTCA+TGG | - | chr4_3:69981356-69981375 | Msa0659600:CDS | 50.0% | |
| CCTCTGGTGATAGAGTAGCT+TGG | + | chr4_3:69981509-69981528 | None:intergenic | 50.0% | |
| CCAAGCTACTCTATCACCAG+AGG | - | chr4_3:69981506-69981525 | Msa0659600:CDS | 50.0% | |
| CGAATTAGCTGCAGCTCTGT+TGG | - | chr4_3:69981614-69981633 | Msa0659600:CDS | 50.0% | |
| GTTGCTGAAGAAGCTGTCTC+AGG | - | chr4_3:69981678-69981697 | Msa0659600:CDS | 50.0% | |
| AACGTGAACCGGGATCATGA+TGG | + | chr4_3:69981968-69981987 | None:intergenic | 50.0% | |
| TCATGATCCCGGTTCACGTT+AGG | - | chr4_3:69981968-69981987 | Msa0659600:CDS | 50.0% | |
| CCTAACTCCTAACGTGAACC+GGG | + | chr4_3:69981978-69981997 | None:intergenic | 50.0% | |
| GCTGCAAGACAGAAGAACTC+AGG | - | chr4_3:69982206-69982225 | Msa0659600:intron | 50.0% | |
| GGTGACTAACTCGGTCTTCA+AGG | + | chr4_3:69982232-69982251 | None:intergenic | 50.0% | |
| GACCGAGTTAGTCACCTTGA+TGG | - | chr4_3:69982236-69982255 | Msa0659600:intron | 50.0% | |
| CCCCATCAAGGTGACTAACT+CGG | + | chr4_3:69982241-69982260 | None:intergenic | 50.0% | |
| CCGAGTTAGTCACCTTGATG+GGG | - | chr4_3:69982238-69982257 | Msa0659600:intron | 50.0% | |
| GCTGCCTCATACACTCTTTG+AGG | + | chr4_3:69982265-69982284 | None:intergenic | 50.0% | |
| CTATTCGCTCCGATCTTCAG+AGG | - | chr4_3:69982435-69982454 | Msa0659600:intron | 50.0% | |
| TCAGAGGAGACTTGATGCTG+TGG | - | chr4_3:69982451-69982470 | Msa0659600:intron | 50.0% | |
| GAGACTTGATGCTGTGGAGA+AGG | - | chr4_3:69982457-69982476 | Msa0659600:intron | 50.0% | |
| ! | TGAGCTGCAATCTCGACTTG+AGG | - | chr4_3:69982499-69982518 | Msa0659600:intron | 50.0% |
| CAGCAAGCCTTTCCATCTCA+AGG | + | chr4_3:69982886-69982905 | None:intergenic | 50.0% | |
| CGGCTTCCACTTTCTGTATC+TGG | + | chr4_3:69982914-69982933 | None:intergenic | 50.0% | |
| CTCAAGTTCAGCAAGATGCC+AGG | - | chr4_3:69983395-69983414 | Msa0659600:intron | 50.0% | |
| AGATGCCAGGACTTTGCACA+AGG | - | chr4_3:69983408-69983427 | Msa0659600:intron | 50.0% | |
| GCTAGTCAACAGCAGCTTGT+CGG | + | chr4_3:69983671-69983690 | None:intergenic | 50.0% | |
| ! | GTAGTTTGGACTCTGGAAGC+AGG | - | chr4_3:69983744-69983763 | Msa0659600:intron | 50.0% |
| CTGCTCACACTCTTGCTTCT+TGG | + | chr4_3:69984241-69984260 | None:intergenic | 50.0% | |
| ! | CAAGAAGCAAGAGTGTGAGC+AGG | - | chr4_3:69984239-69984258 | Msa0659600:five_prime_UTR | 50.0% |
| CATGCGTGGACCATGTGCAA+GGG | + | chr4_3:69979863-69979882 | None:intergenic | 55.0% | |
| !!! | CTGCTGCTGCTGCTGGTTTT+TGG | - | chr4_3:69980642-69980661 | Msa0659600:intron | 55.0% |
| GGAGAAAAGTCCAGGCGAGA+CGG | - | chr4_3:69980714-69980733 | Msa0659600:intron | 55.0% | |
| GCAGGCTTAGATGTGACCTC+TGG | + | chr4_3:69981525-69981544 | None:intergenic | 55.0% | |
| CCCGGTTCACGTTAGGAGTT+AGG | - | chr4_3:69981975-69981994 | Msa0659600:CDS | 55.0% | |
| CTGGGAGAAGGCTGAAAACG+AGG | - | chr4_3:69982157-69982176 | Msa0659600:intron | 55.0% | |
| ! | ACTCTTTGAGGGCCCCATCA+AGG | + | chr4_3:69982253-69982272 | None:intergenic | 55.0% |
| ! | GGGCCCTCAAAGAGTGTATG+AGG | - | chr4_3:69982258-69982277 | Msa0659600:intron | 55.0% |
| GCTCTTGCACTTCTCTGGCT+TGG | + | chr4_3:69982292-69982311 | None:intergenic | 55.0% | |
| AGCAGCTTGTCGGTAGTCGA+CGG | + | chr4_3:69983661-69983680 | None:intergenic | 55.0% | |
| GCATGCGTGGACCATGTGCA+AGG | + | chr4_3:69979864-69979883 | None:intergenic | 60.0% | |
| TCCAGGCGAGACGGAGAGTT+CGG | - | chr4_3:69980723-69980742 | Msa0659600:intron | 60.0% | |
| CCAGGCGAGACGGAGAGTTC+GGG | - | chr4_3:69980724-69980743 | Msa0659600:intron | 65.0% | |
| GCTGCTGCTGCTGCTGCTGC+TGG | - | chr4_3:69980635-69980654 | Msa0659600:intron | 70.0% | |
| CCCGAACTCTCCGTCTCGCC+TGG | + | chr4_3:69980727-69980746 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 69979759 | 69984525 | 69979759 | ID=Msa0659600;Name=Msa0659600 |
| chr4_3 | mRNA | 69979759 | 69984525 | 69979759 | ID=Msa0659600-mRNA-1;Parent=Msa0659600;Name=Msa0659600-mRNA-1;_AED=0.11;_eAED=0.11;_QI=429|0.6|0.83|0.83|0.8|0.66|6|255|655 |
| chr4_3 | exon | 69979759 | 69980325 | 69979759 | ID=Msa0659600-mRNA-1:exon:20650;Parent=Msa0659600-mRNA-1 |
| chr4_3 | exon | 69980822 | 69982128 | 69980822 | ID=Msa0659600-mRNA-1:exon:20649;Parent=Msa0659600-mRNA-1 |
| chr4_3 | exon | 69982585 | 69982789 | 69982585 | ID=Msa0659600-mRNA-1:exon:20648;Parent=Msa0659600-mRNA-1 |
| chr4_3 | exon | 69983051 | 69983083 | 69983051 | ID=Msa0659600-mRNA-1:exon:20647;Parent=Msa0659600-mRNA-1 |
| chr4_3 | exon | 69983498 | 69983684 | 69983498 | ID=Msa0659600-mRNA-1:exon:20646;Parent=Msa0659600-mRNA-1 |
| chr4_3 | exon | 69984173 | 69984525 | 69984173 | ID=Msa0659600-mRNA-1:exon:20645;Parent=Msa0659600-mRNA-1 |
| chr4_3 | five_prime_UTR | 69984173 | 69984525 | 69984173 | ID=Msa0659600-mRNA-1:five_prime_utr;Parent=Msa0659600-mRNA-1 |
| chr4_3 | five_prime_UTR | 69983609 | 69983684 | 69983609 | ID=Msa0659600-mRNA-1:five_prime_utr;Parent=Msa0659600-mRNA-1 |
| chr4_3 | CDS | 69983498 | 69983608 | 69983498 | ID=Msa0659600-mRNA-1:cds;Parent=Msa0659600-mRNA-1 |
| chr4_3 | CDS | 69983051 | 69983083 | 69983051 | ID=Msa0659600-mRNA-1:cds;Parent=Msa0659600-mRNA-1 |
| chr4_3 | CDS | 69982585 | 69982789 | 69982585 | ID=Msa0659600-mRNA-1:cds;Parent=Msa0659600-mRNA-1 |
| chr4_3 | CDS | 69980822 | 69982128 | 69980822 | ID=Msa0659600-mRNA-1:cds;Parent=Msa0659600-mRNA-1 |
| chr4_3 | CDS | 69980014 | 69980325 | 69980014 | ID=Msa0659600-mRNA-1:cds;Parent=Msa0659600-mRNA-1 |
| chr4_3 | three_prime_UTR | 69979759 | 69980013 | 69979759 | ID=Msa0659600-mRNA-1:three_prime_utr;Parent=Msa0659600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
