AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0628890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0628890 MtrunA17_Chr4g0004821 89.452 493 33 3 1 490 1 477 0.0 859
Msa0628890 MtrunA17_Chr6g0486021 61.538 494 165 4 5 489 13 490 0.0 578
Msa0628890 MtrunA17_Chr3g0119401 39.195 472 265 6 20 485 77 532 8.37e-103 318
Msa0628890 MtrunA17_Chr7g0250881 38.316 475 272 4 17 485 43 502 1.18e-99 308
Msa0628890 MtrunA17_Chr6g0457781 37.166 487 277 5 14 485 70 542 1.22e-95 300
Msa0628890 MtrunA17_Chr1g0155221 29.870 462 276 14 40 482 53 485 1.25e-42 158
Msa0628890 MtrunA17_Chr8g0373181 28.017 464 287 13 40 485 51 485 6.00e-40 150
Msa0628890 MtrunA17_Chr4g0032021 26.938 516 321 13 2 486 65 555 1.18e-38 148
Msa0628890 MtrunA17_Chr1g0213631 31.098 328 208 5 170 483 107 430 3.75e-37 142
Msa0628890 MtrunA17_Chr7g0214451 26.652 454 306 7 42 483 39 477 1.91e-35 138
Msa0628890 MtrunA17_Chr4g0066581 27.601 471 282 14 37 485 53 486 3.39e-34 134
Msa0628890 MtrunA17_Chr8g0373191 30.303 330 210 9 169 486 137 458 1.92e-33 132
Msa0628890 MtrunA17_Chr7g0273281 26.667 465 285 11 41 485 67 495 1.95e-33 132
Msa0628890 MtrunA17_Chr4g0039651 26.964 471 276 13 49 482 58 497 7.20e-33 130
Msa0628890 MtrunA17_Chr2g0286721 28.085 470 275 14 37 482 50 480 4.21e-32 128
Msa0628890 MtrunA17_Chr1g0213611 26.068 468 295 11 42 483 84 526 3.77e-31 126
Msa0628890 MtrunA17_Chr2g0282031 28.846 468 281 15 41 483 58 498 6.09e-31 125
Msa0628890 MtrunA17_Chr7g0259221 27.122 483 262 11 42 487 48 477 3.35e-30 122
Msa0628890 MtrunA17_Chr7g0259471 27.505 469 278 11 42 487 46 475 7.13e-30 122
Msa0628890 MtrunA17_Chr4g0021771 27.108 498 306 16 16 483 30 500 2.77e-29 120
Msa0628890 MtrunA17_Chr5g0432581 28.455 492 266 19 41 482 24 479 3.28e-29 120
Msa0628890 MtrunA17_Chr4g0036021 26.994 489 274 13 41 482 32 484 1.53e-28 118
Msa0628890 MtrunA17_Chr8g0390261 25.490 408 274 8 87 481 95 485 1.03e-27 115
Msa0628890 MtrunA17_Chr6g0486681 26.316 323 227 6 169 481 164 485 1.18e-27 115
Msa0628890 MtrunA17_Chr6g0486671 26.316 323 227 6 169 481 164 485 1.18e-27 115
Msa0628890 MtrunA17_Chr8g0373531 26.243 503 306 16 17 483 7 480 2.56e-27 114
Msa0628890 MtrunA17_Chr8g0390521 28.088 502 288 17 17 482 4 468 3.57e-27 114
Msa0628890 MtrunA17_Chr5g0394341 27.134 328 219 7 169 481 161 483 9.37e-27 113
Msa0628890 MtrunA17_Chr3g0144361 25.049 511 313 13 18 482 2 488 1.05e-26 113
Msa0628890 MtrunA17_Chr3g0121674 29.268 287 181 6 213 483 4 284 1.50e-26 109
Msa0628890 MtrunA17_Chr3g0115711 27.744 328 217 7 169 481 160 482 4.93e-26 110
Msa0628890 MtrunA17_Chr6g0485661 26.786 504 286 16 21 477 35 502 5.54e-26 110
Msa0628890 MtrunA17_Chr8g0390141 24.204 471 311 9 41 481 31 485 1.84e-25 109
Msa0628890 MtrunA17_Chr3g0115721 27.928 333 215 9 169 483 160 485 1.99e-25 109
Msa0628890 MtrunA17_Chr2g0303731 29.226 349 215 8 33 365 21 353 2.23e-25 109
Msa0628890 MtrunA17_Chr4g0034681 24.851 503 307 13 18 482 19 488 4.23e-24 105
Msa0628890 MtrunA17_Chr4g0065311 26.300 327 225 5 169 483 158 480 6.87e-24 104
Msa0628890 MtrunA17_Chr1g0205691 26.462 325 225 6 169 481 161 483 6.91e-24 104
Msa0628890 MtrunA17_Chr3g0115781 25.826 333 222 9 169 483 162 487 3.48e-23 102
Msa0628890 MtrunA17_Chr7g0273261 32.020 203 132 3 286 485 38 237 4.45e-23 98.6
Msa0628890 MtrunA17_Chr3g0115751 26.074 326 224 6 170 481 166 488 2.48e-22 100
Msa0628890 MtrunA17_Chr3g0115741 26.140 329 222 8 169 481 163 486 1.76e-21 97.4
Msa0628890 MtrunA17_Chr3g0078971 25.846 325 223 7 172 482 164 484 2.14e-21 97.1
Msa0628890 MtrunA17_Chr3g0115731 27.815 302 192 10 200 483 171 464 2.79e-21 96.7
Msa0628890 MtrunA17_Chr1g0205671 24.695 328 227 7 169 481 161 483 6.91e-21 95.5
Msa0628890 MtrunA17_Chr5g0420841 24.085 328 235 5 169 483 160 486 9.78e-21 95.1
Msa0628890 MtrunA17_Chr3g0128081 25.526 333 222 6 169 482 161 486 1.93e-20 94.4
Msa0628890 MtrunA17_Chr4g0065324 26.364 330 225 10 169 485 166 490 4.59e-20 93.2
Msa0628890 MtrunA17_Chr3g0078991 25.846 325 224 9 172 482 164 485 7.10e-20 92.4
Msa0628890 MtrunA17_Chr8g0376611 29.110 292 182 5 80 360 4 281 1.29e-19 91.7
Msa0628890 MtrunA17_Chr1g0205681 21.491 456 325 8 42 478 47 488 3.52e-19 90.1
Msa0628890 MtrunA17_Chr3g0078791 24.096 332 206 7 169 481 106 410 4.20e-19 89.7
Msa0628890 MtrunA17_Chr1g0164851 24.384 406 281 6 88 482 94 484 5.20e-19 90.1
Msa0628890 MtrunA17_Chr1g0164871 24.138 406 282 6 88 482 94 484 5.53e-19 89.7
Msa0628890 MtrunA17_Chr5g0403831 24.566 346 227 8 169 482 149 492 7.57e-19 89.4
Msa0628890 MtrunA17_Chr4g0065351 25.228 329 222 8 169 481 1 321 4.00e-18 85.9
Msa0628890 MtrunA17_Chr2g0290181 25.070 355 231 8 32 365 17 357 4.16e-18 87.4
Msa0628890 MtrunA17_Chr3g0128171 25.305 328 231 6 169 483 114 440 5.72e-18 86.3
Msa0628890 MtrunA17_Chr8g0376631 27.027 333 213 6 37 355 27 343 8.44e-18 86.3
Msa0628890 MtrunA17_Chr5g0417611 24.012 329 230 7 169 481 162 486 3.46e-17 84.3
Msa0628890 MtrunA17_Chr5g0445601 24.615 325 229 5 169 481 164 484 6.39e-17 83.2
Msa0628890 MtrunA17_Chr3g0146061 29.268 205 132 1 290 481 519 723 9.96e-17 83.2
Msa0628890 MtrunA17_Chr3g0085971 24.653 288 205 4 207 483 200 486 1.06e-16 82.8
Msa0628890 MtrunA17_Chr7g0257631 24.615 325 229 5 169 481 198 518 2.12e-16 82.0
Msa0628890 MtrunA17_Chr4g0048411 23.547 327 236 6 169 482 161 486 3.06e-16 81.3
Msa0628890 MtrunA17_Chr5g0437021 24.540 326 231 7 169 482 162 484 1.17e-15 79.3
Msa0628890 MtrunA17_Chr3g0144261 28.745 247 157 5 249 481 472 713 2.63e-15 79.0
Msa0628890 MtrunA17_Chr2g0303701 25.714 350 235 7 33 371 21 356 2.96e-15 78.2
Msa0628890 MtrunA17_Chr4g0048051 23.228 254 178 4 207 446 201 451 1.34e-14 76.3
Msa0628890 MtrunA17_Chr8g0370151 27.053 207 138 1 288 481 138 344 4.27e-14 73.6
Msa0628890 MtrunA17_Chr8g0376601 28.713 202 134 3 170 361 148 349 8.73e-14 73.6
Msa0628890 MtrunA17_Chr5g0404181 34.951 103 62 2 384 484 31 130 6.08e-13 65.9
Msa0628890 MtrunA17_Chr2g0290161 27.586 174 111 5 205 365 93 264 3.47e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0628890 AT1G79820.2 63.253 498 158 5 1 488 11 493 0.0 610
Msa0628890 AT1G79820.1 63.253 498 158 5 1 488 11 493 0.0 610
Msa0628890 AT1G67300.1 60.887 496 166 6 5 488 13 492 0.0 559
Msa0628890 AT1G67300.3 60.887 496 166 6 5 488 13 492 0.0 559
Msa0628890 AT1G67300.2 60.563 497 167 7 5 488 13 493 0.0 553
Msa0628890 AT1G79820.4 61.818 440 143 5 1 430 11 435 0.0 528
Msa0628890 AT1G79820.3 56.225 498 145 6 1 488 11 445 0.0 518
Msa0628890 AT1G67300.6 59.589 438 149 6 5 430 13 434 4.53e-173 494
Msa0628890 AT1G67300.7 59.589 438 149 6 5 430 13 434 4.53e-173 494
Msa0628890 AT1G67300.4 59.353 433 148 6 5 425 13 429 4.98e-169 484
Msa0628890 AT1G67300.5 59.353 433 148 6 5 425 13 429 4.98e-169 484
Msa0628890 AT1G79820.5 59.688 320 81 1 169 488 112 383 2.50e-126 373
Msa0628890 AT1G05030.1 40.748 481 262 6 16 489 57 521 8.54e-110 336
Msa0628890 AT1G05030.2 40.774 439 239 5 56 489 47 469 1.06e-97 303
Msa0628890 AT5G16150.2 38.105 475 272 4 16 485 85 542 2.80e-94 296
Msa0628890 AT5G16150.1 38.105 475 272 4 16 485 85 542 2.80e-94 296
Msa0628890 AT5G16150.3 38.105 475 272 4 16 485 85 542 2.80e-94 296
Msa0628890 AT1G75220.1 30.917 469 261 16 40 482 52 483 3.97e-41 154
Msa0628890 AT1G19450.1 30.258 466 268 15 40 482 53 484 5.62e-41 154
Msa0628890 AT1G54730.2 28.664 464 275 13 42 485 38 465 1.99e-40 152
Msa0628890 AT2G48020.2 28.953 487 299 14 8 482 7 458 5.04e-35 136
Msa0628890 AT2G48020.1 28.953 487 299 14 8 482 7 458 5.04e-35 136
Msa0628890 AT1G08930.1 27.038 503 312 16 3 490 33 495 5.22e-35 137
Msa0628890 AT1G08930.2 27.038 503 312 16 3 490 33 495 5.22e-35 137
Msa0628890 AT1G54730.5 27.632 456 269 14 42 485 38 444 2.08e-34 134
Msa0628890 AT5G59250.1 27.216 485 300 10 33 486 95 557 3.14e-34 135
Msa0628890 AT5G17010.1 27.888 502 302 14 10 482 29 499 4.08e-34 134
Msa0628890 AT5G17010.3 27.888 502 302 14 10 482 29 499 4.08e-34 134
Msa0628890 AT5G17010.4 27.888 502 302 14 10 482 29 499 4.08e-34 134
Msa0628890 AT2G43330.1 26.915 457 305 8 40 482 35 476 4.41e-33 132
Msa0628890 AT1G54730.3 28.230 418 245 12 42 439 38 420 6.06e-33 130
Msa0628890 AT5G18840.1 26.839 503 288 14 10 482 23 475 1.16e-31 127
Msa0628890 AT3G05160.1 26.915 483 316 11 10 485 2 454 2.21e-31 126
Msa0628890 AT3G05160.3 27.941 408 265 8 85 485 20 405 4.74e-31 124
Msa0628890 AT3G05160.2 27.941 408 265 8 85 485 20 405 4.74e-31 124
Msa0628890 AT3G05150.2 26.190 462 286 11 41 482 40 466 2.69e-30 123
Msa0628890 AT3G05150.1 26.190 462 286 11 41 482 40 466 4.00e-30 122
Msa0628890 AT3G05150.3 26.190 462 286 11 41 482 40 466 4.00e-30 122
Msa0628890 AT3G03090.1 25.296 506 314 16 8 482 27 499 4.17e-30 123
Msa0628890 AT3G05165.3 26.283 487 317 12 9 485 9 463 4.92e-30 122
Msa0628890 AT3G05165.2 26.283 487 317 12 9 485 9 463 4.92e-30 122
Msa0628890 AT3G05165.1 26.283 487 317 12 9 485 9 463 4.92e-30 122
Msa0628890 AT2G20780.1 26.693 502 298 16 17 483 32 498 1.28e-28 119
Msa0628890 AT1G54730.9 27.007 411 243 13 42 432 38 411 2.64e-28 117
Msa0628890 AT1G54730.7 27.007 411 243 13 42 432 38 411 2.64e-28 117
Msa0628890 AT3G18830.1 25.447 503 304 14 23 482 21 495 2.66e-28 118
Msa0628890 AT4G04760.1 27.371 464 298 13 32 482 27 464 7.72e-28 116
Msa0628890 AT5G27360.1 26.531 490 328 9 4 488 9 471 1.09e-27 115
Msa0628890 AT4G36670.1 25.889 506 294 15 25 482 4 476 1.13e-27 116
Msa0628890 AT1G08900.5 29.573 328 210 7 169 486 101 417 1.58e-27 114
Msa0628890 AT1G08900.1 29.573 328 210 7 169 486 143 459 1.97e-27 115
Msa0628890 AT1G08900.2 29.573 328 210 7 169 486 143 459 1.97e-27 115
Msa0628890 AT1G08900.3 29.573 328 210 7 169 486 135 451 2.26e-27 114
Msa0628890 AT5G27360.3 26.531 490 328 9 4 488 57 519 3.05e-27 115
Msa0628890 AT1G54730.4 27.073 410 239 13 42 439 38 399 6.42e-27 112
Msa0628890 AT1G08890.1 25.926 459 294 9 42 485 33 460 8.99e-27 113
Msa0628890 AT3G05155.1 26.282 468 265 14 46 482 37 455 1.12e-26 112
Msa0628890 AT4G04760.3 28.221 326 212 8 169 482 90 405 2.37e-26 111
Msa0628890 AT5G26340.1 26.769 325 224 6 169 481 162 484 4.57e-26 111
Msa0628890 AT5G27360.2 29.538 325 218 5 169 488 49 367 5.02e-26 109
Msa0628890 AT5G27360.5 29.538 325 218 5 169 488 49 367 5.02e-26 109
Msa0628890 AT4G04750.1 26.882 465 284 12 42 485 42 471 8.27e-26 110
Msa0628890 AT4G04750.2 26.882 465 284 12 42 485 42 471 8.27e-26 110
Msa0628890 AT1G08920.1 26.078 510 305 13 1 485 3 465 9.03e-26 110
Msa0628890 AT3G19940.1 25.309 324 230 5 169 481 163 485 1.12e-25 110
Msa0628890 AT4G04750.3 26.882 465 284 12 42 485 86 515 1.26e-25 110
Msa0628890 AT2G16130.1 25.692 506 312 14 18 482 4 486 5.44e-25 108
Msa0628890 AT3G19930.1 26.074 326 228 4 169 482 160 484 7.60e-25 107
Msa0628890 AT3G19930.2 26.074 326 228 4 169 482 160 484 7.60e-25 107
Msa0628890 AT3G20460.1 24.694 490 305 13 16 485 41 486 1.07e-24 107
Msa0628890 AT1G08920.2 25.919 517 304 14 1 485 3 472 2.59e-24 106
Msa0628890 AT5G27350.1 28.746 327 218 6 169 488 149 467 3.41e-24 105
Msa0628890 AT3G05165.6 26.941 438 283 12 42 468 36 447 4.40e-24 105
Msa0628890 AT2G20780.2 26.698 427 249 13 88 483 47 440 6.43e-24 104
Msa0628890 AT4G04760.2 26.452 465 298 13 32 482 27 461 1.24e-23 103
Msa0628890 AT1G50310.2 24.308 325 233 6 169 481 20 343 1.66e-23 102
Msa0628890 AT3G05400.1 25.153 489 303 15 16 486 17 460 2.85e-23 102
Msa0628890 AT1G50310.1 24.308 325 233 6 169 481 163 486 7.84e-23 102
Msa0628890 AT1G54730.8 25.806 403 237 14 42 432 38 390 1.93e-22 99.8
Msa0628890 AT2G18480.1 24.893 466 296 12 50 482 36 480 5.50e-22 99.4
Msa0628890 AT1G54730.11 26.994 326 196 9 42 355 38 333 6.74e-22 97.1
Msa0628890 AT2G16120.1 25.198 504 312 15 20 482 7 486 8.04e-22 99.0
Msa0628890 AT1G77210.3 25.000 328 225 7 169 481 15 336 1.15e-21 96.7
Msa0628890 AT3G05165.4 26.065 399 260 10 42 430 36 409 2.51e-21 97.1
Msa0628890 AT3G05165.5 26.065 399 260 10 42 430 36 409 2.51e-21 97.1
Msa0628890 AT1G77210.2 25.000 328 225 7 169 481 164 485 3.72e-21 96.7
Msa0628890 AT1G77210.1 25.000 328 225 7 169 481 164 485 3.72e-21 96.7
Msa0628890 AT3G05400.2 26.140 329 220 7 169 486 124 440 1.07e-20 95.1
Msa0628890 AT1G30220.1 25.000 368 247 8 14 367 5 357 1.10e-20 95.9
Msa0628890 AT1G30220.1 36.000 100 64 0 383 482 454 553 1.34e-11 67.4
Msa0628890 AT1G08920.3 26.039 457 267 12 13 444 15 425 1.18e-20 94.7
Msa0628890 AT2G48020.4 28.533 375 227 12 8 375 7 347 1.45e-20 94.0
Msa0628890 AT4G02050.2 24.085 328 231 6 169 483 164 486 5.71e-20 93.2
Msa0628890 AT4G02050.1 24.085 328 231 6 169 483 164 486 5.71e-20 93.2
Msa0628890 AT2G48020.3 27.887 355 217 10 8 355 7 329 1.24e-19 90.9
Msa0628890 AT2G35740.1 25.000 340 226 6 37 361 27 352 3.49e-19 90.9
Msa0628890 AT1G08900.4 27.972 286 186 6 169 444 143 418 6.90e-19 89.4
Msa0628890 AT4G21480.1 23.476 328 233 4 169 482 161 484 7.76e-19 89.7
Msa0628890 AT5G61520.2 25.155 322 231 6 169 481 119 439 2.43e-18 87.8
Msa0628890 AT5G61520.1 25.155 322 231 6 169 481 167 487 3.54e-18 87.8
Msa0628890 AT5G23270.1 24.620 329 227 7 169 481 163 486 4.63e-18 87.4
Msa0628890 AT3G51490.2 30.435 207 131 2 288 481 510 716 1.05e-17 86.7
Msa0628890 AT3G51490.3 30.435 207 131 2 288 481 460 666 1.12e-17 86.7
Msa0628890 AT1G20840.2 32.367 207 127 2 288 481 509 715 1.52e-17 86.3
Msa0628890 AT1G20840.1 32.367 207 127 2 288 481 509 715 1.52e-17 86.3
Msa0628890 AT1G11260.1 23.364 321 218 6 185 481 169 485 1.60e-17 85.9
Msa0628890 AT1G54730.10 26.936 297 175 9 42 326 38 304 1.00e-16 81.6
Msa0628890 AT1G54730.6 26.936 297 175 9 42 326 38 304 1.00e-16 81.6
Msa0628890 AT1G34580.2 25.926 324 220 8 169 475 111 431 1.02e-16 82.8
Msa0628890 AT1G34580.1 25.926 324 220 8 169 475 161 481 1.48e-16 82.8
Msa0628890 AT4G16480.2 26.136 352 223 9 32 361 17 353 1.67e-16 82.8
Msa0628890 AT4G16480.3 26.136 352 223 9 32 361 17 353 1.67e-16 82.8
Msa0628890 AT4G16480.1 26.136 352 223 9 32 361 17 353 1.67e-16 82.8
Msa0628890 AT4G35300.5 29.469 207 133 2 288 481 319 525 2.85e-16 82.0
Msa0628890 AT4G35300.9 29.469 207 133 2 288 481 506 712 4.42e-16 81.6
Msa0628890 AT4G35300.2 29.469 207 133 2 288 481 506 712 4.42e-16 81.6
Msa0628890 AT4G35300.3 29.469 207 133 2 288 481 506 712 4.42e-16 81.6
Msa0628890 AT4G35300.4 29.469 207 133 2 288 481 516 722 4.67e-16 81.6
Msa0628890 AT4G35300.8 29.469 207 133 2 288 481 516 722 4.67e-16 81.6
Msa0628890 AT4G35300.6 29.469 207 133 2 288 481 516 722 4.67e-16 81.6
Msa0628890 AT4G35300.11 29.469 207 133 2 288 481 516 722 4.67e-16 81.6
Msa0628890 AT4G35300.1 29.469 207 133 2 288 481 516 722 4.67e-16 81.6
Msa0628890 AT4G35300.10 29.469 207 133 2 288 481 516 722 4.67e-16 81.6
Msa0628890 AT4G35300.7 29.469 207 133 2 288 481 516 722 4.67e-16 81.6
Msa0628890 AT5G26250.1 22.840 324 238 6 169 482 159 480 8.88e-16 80.1
Msa0628890 AT3G05155.2 26.205 332 180 10 46 355 37 325 1.85e-15 77.8
Msa0628890 AT1G07340.1 20.043 469 332 7 41 481 28 481 2.61e-15 78.6
Msa0628890 AT3G51490.1 29.146 199 136 2 288 481 510 708 2.96e-15 79.0
Msa0628890 AT5G27360.4 25.620 363 242 7 4 364 9 345 1.09e-14 76.6
Msa0628890 AT3G05960.1 22.291 323 241 5 169 482 158 479 1.51e-13 73.2

Find 140 sgRNAs with CRISPR-Local

Find 502 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGCTGTGCGGGGTACTTA+TGG 0.127313 4_3:-9640034 Msa0628890:CDS
TTCTTATATGGCTACCATAT+TGG 0.205078 4_3:-9641318 Msa0628890:CDS
TGTAGGAATATGCAATTTAT+TGG 0.226449 4_3:-9638017 Msa0628890:CDS
ATACCAACCAACTATTTCTT+TGG 0.235451 4_3:+9639949 None:intergenic
CAGCTGTGCGGGGTACTTAT+GGG 0.253450 4_3:-9640033 Msa0628890:CDS
TCAATTTCCTCGTTCTTATA+TGG 0.290739 4_3:-9641330 Msa0628890:CDS
GCTGCAAGTTCTTATGCATC+TGG 0.294794 4_3:-9637632 Msa0628890:CDS
TCTTATATGGCTACCATATT+GGG 0.306221 4_3:-9641317 Msa0628890:intron
TGCAGGACTAGACAAATTAA+AGG 0.306806 4_3:-9635913 Msa0628890:three_prime_UTR
TGACCCTATTCAGCTCATTT+AGG 0.308655 4_3:+9636137 None:intergenic
TCAGCTACCTTTGAAAGCTT+TGG 0.312153 4_3:-9638067 Msa0628890:CDS
ATAGCCTAAATGAGCTGAAT+AGG 0.312240 4_3:-9636141 Msa0628890:exon
ATCATGGGTTCGCTCTTTAT+AGG 0.319768 4_3:-9639980 Msa0628890:CDS
GGGTCATATGGATGAGGTAT+AGG 0.323346 4_3:-9636120 Msa0628890:three_prime_UTR
TTGATTTAAAATATAATTGC+AGG 0.336091 4_3:-9635930 Msa0628890:three_prime_UTR
TGTGCTTTGCCTATGATCAT+TGG 0.370781 4_3:-9640938 Msa0628890:CDS
ATCTATAGAAATGCTCTCTA+AGG 0.371450 4_3:+9641190 None:intergenic
TTTGCGCATGCTGGAACAAA+TGG 0.376467 4_3:-9636292 Msa0628890:CDS
AAGCTCTCAGAAATATTGTT+TGG 0.379026 4_3:-9638343 Msa0628890:CDS
GATCTTGCCAGGTAATATTT+CGG 0.383696 4_3:+9637352 None:intergenic
AGTTCTTATGCATCTGGGTC+TGG 0.387932 4_3:-9637626 Msa0628890:CDS
CTATCATTTGCTCTTGGTGC+TGG 0.390421 4_3:-9637398 Msa0628890:CDS
TTTGTCAGTTCACTCATTGC+AGG 0.392399 4_3:+9638397 None:intergenic
AGAGCGCCGCCAACAAGGTT+TGG 0.392731 4_3:+9641374 None:intergenic
GGTGGATAGCAGATGGGGTT+GGG 0.392863 4_3:-9640982 Msa0628890:CDS
CAACCAACTATTTCTTTGGC+TGG 0.395720 4_3:+9639953 None:intergenic
GTGCAACATCAAAATCTCTC+TGG 0.397663 4_3:-9640396 Msa0628890:CDS
GAAGCGTATCATACCCAATA+TGG 0.399405 4_3:+9641304 None:intergenic
GTAGGAATATGCAATTTATT+GGG 0.400286 4_3:-9638016 Msa0628890:intron
AGTTGTATGTTACACAATCT+TGG 0.401761 4_3:+9643158 None:intergenic
CCAAGACAAACCAAAGTAGA+TGG 0.402578 4_3:+9640754 None:intergenic
GCATCAAAATCCATCTACTT+TGG 0.403917 4_3:-9640764 Msa0628890:intron
TGCAACATGTCTTGGAATCA+TGG 0.406095 4_3:-9639996 Msa0628890:CDS
GGCTGAATTTGAGAAGCTCT+TGG 0.406969 4_3:-9638437 Msa0628890:CDS
CTCTTTGCGGCATGTAATAG+TGG 0.413355 4_3:-9641355 Msa0628890:CDS
ATGAGCTGAATAGGGTCATA+TGG 0.429708 4_3:-9636132 Msa0628890:three_prime_UTR
TTGCGTAAGAACGAAATCTA+TGG 0.432351 4_3:-9643201 Msa0628890:five_prime_UTR
TTCAGTGGGTGGATAGCAGA+TGG 0.433775 4_3:-9640989 Msa0628890:CDS
GGCAAAATTTCATGTTAAAG+AGG 0.435069 4_3:+9636038 None:intergenic
GGTCATATGGATGAGGTATA+GGG 0.437547 4_3:-9636119 Msa0628890:three_prime_UTR
ACTCAGATTGCAACATGTCT+TGG 0.438236 4_3:-9640004 Msa0628890:CDS
GGTCTCACCTCCAGCTGTGC+GGG 0.440429 4_3:-9640044 Msa0628890:CDS
ATTACTGCTCCAATGATCAT+AGG 0.447800 4_3:+9640929 None:intergenic
TCTGTTGTGAGGTTTGTATA+AGG 0.448924 4_3:-9642699 Msa0628890:five_prime_UTR
CCATAAGTACCCCGCACAGC+TGG 0.450426 4_3:+9640034 None:intergenic
GCCTTGGCTCTGATCTTGCC+AGG 0.450879 4_3:+9637341 None:intergenic
TCATAGGCAAAGCACACAAC+TGG 0.451176 4_3:+9640945 None:intergenic
AAATATGTTCTGGAAACAAA+AGG 0.453912 4_3:-9636207 Msa0628890:CDS
AAAAGAGCAAGTGCAGCAGC+AGG 0.455605 4_3:+9639525 None:intergenic
CTTGTTGGCGGCGCTCTTTG+CGG 0.457616 4_3:-9641368 Msa0628890:CDS
AATATGCTTGGCTGTGCATT+GGG 0.458610 4_3:-9637312 Msa0628890:intron
TTATTGGATCTTCTTTCAGT+GGG 0.459554 4_3:-9641003 Msa0628890:CDS
CTTTGGTGTATCATCAAAGA+TGG 0.459670 4_3:-9638050 Msa0628890:CDS
CAAGCATATTGCCATTGCCT+TGG 0.466824 4_3:+9637325 None:intergenic
GGGTGGATAGCAGATGGGGT+TGG 0.466937 4_3:-9640983 Msa0628890:CDS
CTTATTTAGGCAGTAACAAT+GGG 0.467958 4_3:-9637668 Msa0628890:intron
TGCAACATCAAAATCTCTCT+GGG 0.468013 4_3:-9640395 Msa0628890:CDS
CTGCAAGTTCTTATGCATCT+GGG 0.468867 4_3:-9637631 Msa0628890:CDS
GCTGAATTTGAGAAGCTCTT+GGG 0.468909 4_3:-9638436 Msa0628890:CDS
TTCTGAGAGCTTCATTGTGC+CGG 0.470849 4_3:+9638354 None:intergenic
AGTTATTTCAATGATTCTGA+TGG 0.474997 4_3:-9637895 Msa0628890:CDS
GAGAGCATTTCTATAGATCT+CGG 0.479132 4_3:-9641185 Msa0628890:CDS
CTATAGATCTCGGCTTTAGT+GGG 0.479517 4_3:-9641175 Msa0628890:CDS
TTGGATCTTCTTTCAGTGGG+TGG 0.481996 4_3:-9641000 Msa0628890:CDS
TAGCCTAAATGAGCTGAATA+GGG 0.483408 4_3:-9636140 Msa0628890:exon
CTTGTAGTAAGTATATGTTT+AGG 0.485985 4_3:-9641034 Msa0628890:CDS
CAAGGCAATGGCAATATGCT+TGG 0.487871 4_3:-9637324 Msa0628890:CDS
TCAGTGGGTGGATAGCAGAT+GGG 0.488350 4_3:-9640988 Msa0628890:CDS
TTTATTGGATCTTCTTTCAG+TGG 0.488684 4_3:-9641004 Msa0628890:CDS
CTCATGTCCGAAATATTACC+TGG 0.490170 4_3:-9637359 Msa0628890:CDS
GATAGTAAAGATGAAAATCC+AGG 0.496030 4_3:-9642612 Msa0628890:intron
AGCTGTGCGGGGTACTTATG+GGG 0.499248 4_3:-9640032 Msa0628890:CDS
CGCAAAGAGCGCCGCCAACA+AGG 0.501285 4_3:+9641369 None:intergenic
GCAGGACTAGACAAATTAAA+GGG 0.501976 4_3:-9635912 Msa0628890:three_prime_UTR
TTTGCTTTGCAGCAACTGTC+CGG 0.503212 4_3:-9638115 Msa0628890:CDS
GACATGAGTAGACAAGGAAC+TGG 0.503435 4_3:+9637374 None:intergenic
TCTATAGATCTCGGCTTTAG+TGG 0.507105 4_3:-9641176 Msa0628890:CDS
TTGCGCATGCTGGAACAAAT+GGG 0.508331 4_3:-9636291 Msa0628890:CDS
AACCAACTATTTCTTTGGCT+GGG 0.508633 4_3:+9639954 None:intergenic
CAATATGCTTGGCTGTGCAT+TGG 0.508935 4_3:-9637313 Msa0628890:CDS
TATGTGCTATCATTTGCTCT+TGG 0.513724 4_3:-9637404 Msa0628890:CDS
CGGCTTTAGTGGGGATACAT+TGG 0.518216 4_3:-9641165 Msa0628890:CDS
CTAGACAAATTAAAGGGATG+AGG 0.521856 4_3:-9635906 Msa0628890:three_prime_UTR
ACAGGTGATAAACTTCTTCG+TGG 0.524143 4_3:-9636325 Msa0628890:intron
ATGATTCTGATGGATAAACT+TGG 0.524839 4_3:-9637885 Msa0628890:CDS
GCAACATGTCTTGGAATCAT+GGG 0.528820 4_3:-9639995 Msa0628890:CDS
TACAGAGTGCCAAACCTTGT+TGG 0.531861 4_3:-9641383 Msa0628890:CDS
CAGGTGATAAACTTCTTCGT+GGG 0.532825 4_3:-9636324 Msa0628890:CDS
AAATTCAGCCTCAGCTTCAA+CGG 0.533355 4_3:+9638450 None:intergenic
TCTTATTTAGGCAGTAACAA+TGG 0.536062 4_3:-9637669 Msa0628890:intron
CAGTGGGTGGATAGCAGATG+GGG 0.539241 4_3:-9640987 Msa0628890:CDS
AATATGTTCTGGAAACAAAA+GGG 0.539714 4_3:-9636206 Msa0628890:CDS
TCTGACAGAGGTGATGAGTC+CGG 0.542164 4_3:-9638373 Msa0628890:CDS
TCTGTGCAGAGAGTCCTCAT+TGG 0.546021 4_3:-9639494 Msa0628890:CDS
TGGTGCAGGAATTTGTTGAA+AGG 0.554963 4_3:-9642725 Msa0628890:intron
AAGATGGGAAACACATGTGT+AGG 0.563307 4_3:-9638034 Msa0628890:CDS
ATCCCAGCCAAAGAAATAGT+TGG 0.564233 4_3:-9639956 Msa0628890:CDS
AACAAAAGGGAAGTCACTGC+AGG 0.569265 4_3:-9636193 Msa0628890:CDS
GTAGTAAGTATATGTTTAGG+AGG 0.569409 4_3:-9641031 Msa0628890:CDS
ATATAAGAACGAGGAAATTG+AGG 0.576525 4_3:+9641332 None:intergenic
AGGAAGAACCGTTGAAGCTG+AGG 0.585188 4_3:-9638458 Msa0628890:CDS
AGAGTGCCAAACCTTGTTGG+CGG 0.585760 4_3:-9641380 Msa0628890:CDS
AAGACAGCGAGTCGCATCAA+GGG 0.588707 4_3:-9642652 Msa0628890:CDS
TGAATAGGGTCATATGGATG+AGG 0.588796 4_3:-9636126 Msa0628890:three_prime_UTR
TTTGGTGTATCATCAAAGAT+GGG 0.589082 4_3:-9638049 Msa0628890:CDS
TAATATTTAAGCTAATACAA+TGG 0.590589 4_3:+9636017 None:intergenic
TTGACCTTGAAAAGCCAATG+AGG 0.591069 4_3:+9639480 None:intergenic
TGATACACCAAAGCTTTCAA+AGG 0.591297 4_3:+9638060 None:intergenic
ATAGAAAACAGCATTTATGC+CGG 0.592130 4_3:+9638096 None:intergenic
GAAGACAGCGAGTCGCATCA+AGG 0.593518 4_3:-9642653 Msa0628890:CDS
GCAGTTGAAGAAGAAGAAGA+AGG 0.594386 4_3:+9643127 None:intergenic
TAGACAAATTAAAGGGATGA+GGG 0.597924 4_3:-9635905 Msa0628890:three_prime_UTR
TGAAGTGTAAAATTTGATGA+TGG 0.598972 4_3:+9643105 None:intergenic
GAATTTGAGAAGCTCTTGGG+AGG 0.600706 4_3:-9638433 Msa0628890:CDS
GGAAGGAAAGTGCTTCTCCT+CGG 0.603741 4_3:-9637864 Msa0628890:CDS
TGATCATTGGAGCAGTAATG+AGG 0.609046 4_3:-9640925 Msa0628890:intron
CAAGATCAGAGCCAAGGCAA+TGG 0.609101 4_3:-9637336 Msa0628890:CDS
GTCTCACCTCCAGCTGTGCG+GGG 0.609230 4_3:-9640043 Msa0628890:CDS
CAGCCAAAGAAATAGTTGGT+TGG 0.609989 4_3:-9639952 Msa0628890:intron
ACCTGGCAAGATCAGAGCCA+AGG 0.610725 4_3:-9637342 Msa0628890:CDS
TTCTGATGGATAAACTTGGA+AGG 0.614483 4_3:-9637881 Msa0628890:CDS
GCTGTGCGGGGTACTTATGG+GGG 0.616126 4_3:-9640031 Msa0628890:CDS
AGGTCTCACCTCCAGCTGTG+CGG 0.619413 4_3:-9640045 Msa0628890:CDS
AGTGGGGATACATTGGCTGA+AGG 0.623427 4_3:-9641158 Msa0628890:intron
TAAGTACCCCGCACAGCTGG+AGG 0.624145 4_3:+9640037 None:intergenic
GGAGCAATGTATCTATCCGT+CGG 0.625720 4_3:-9637605 Msa0628890:CDS
TATAGATCTCGGCTTTAGTG+GGG 0.626366 4_3:-9641174 Msa0628890:CDS
TATGATGTATACCTCTGGCA+TGG 0.627306 4_3:+9638317 None:intergenic
TTGTTTGGCTGCCATGCCAG+AGG 0.628196 4_3:-9638328 Msa0628890:intron
CAACATCAAAATCTCTCTGG+GGG 0.633991 4_3:-9640393 Msa0628890:CDS
TTGAAAGGTAATCTGTTGTG+AGG 0.634251 4_3:-9642710 Msa0628890:five_prime_UTR
TTACAGCAACATGCCACCGA+CGG 0.651122 4_3:+9637589 None:intergenic
AAAGAGCAAGTGCAGCAGCA+GGG 0.652349 4_3:+9639526 None:intergenic
ATTTCGGACATGAGTAGACA+AGG 0.663976 4_3:+9637368 None:intergenic
TTACATCATCATCAATAACA+AGG 0.673832 4_3:-9643015 Msa0628890:intron
AGGTGATAAACTTCTTCGTG+GGG 0.680796 4_3:-9636323 Msa0628890:CDS
GCAACATCAAAATCTCTCTG+GGG 0.684944 4_3:-9640394 Msa0628890:CDS
GCAATGTATCTATCCGTCGG+TGG 0.687913 4_3:-9637602 Msa0628890:CDS
GAACTGACAAAGTCTGACAG+AGG 0.717407 4_3:-9638385 Msa0628890:CDS
ATGGTAGCCATATAAGAACG+AGG 0.727938 4_3:+9641323 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTGAG+AGG - chr4_3:9636736-9636755 Msa0628890:intron 10.0%
!!! TTTTTTTTTTTTTTTTGAGA+GGG - chr4_3:9636737-9636756 Msa0628890:intron 10.0%
!!! TTATATGAGATTTTTATATT+GGG + chr4_3:9637133-9637152 None:intergenic 10.0%
!!! ATTATATGAGATTTTTATAT+TGG + chr4_3:9637134-9637153 None:intergenic 10.0%
!! TATATATAAACTAAAAAGAT+CGG - chr4_3:9639871-9639890 Msa0628890:intron 10.0%
!!! TATTGATTTATTTAGACTAA+AGG - chr4_3:9637056-9637075 Msa0628890:intron 15.0%
!!! TATATGAGATTTTTATATTG+GGG + chr4_3:9637132-9637151 None:intergenic 15.0%
!! AAATATTGAAATCAATGAAA+GGG + chr4_3:9637418-9637437 None:intergenic 15.0%
!! AAAATATTGAAATCAATGAA+AGG + chr4_3:9637419-9637438 None:intergenic 15.0%
!! TAATTGAAAACAATTAGAAA+GGG + chr4_3:9638607-9638626 None:intergenic 15.0%
!! ATAATTGAAAACAATTAGAA+AGG + chr4_3:9638608-9638627 None:intergenic 15.0%
!!! TTCTAATTGTTTTCAATTAT+TGG - chr4_3:9638608-9638627 Msa0628890:intron 15.0%
!! AAAATAAATGACAGTTAAAA+AGG + chr4_3:9639322-9639341 None:intergenic 15.0%
!!! TCCTTTTTAAGTATTATTTA+AGG + chr4_3:9639504-9639523 None:intergenic 15.0%
!! AAATAATACTTAAAAAGGAA+CGG - chr4_3:9639505-9639524 Msa0628890:CDS 15.0%
!! TTCTATAAATAATATCAGTT+GGG + chr4_3:9639546-9639565 None:intergenic 15.0%
!! TTTCTATAAATAATATCAGT+TGG + chr4_3:9639547-9639566 None:intergenic 15.0%
!! AAATTGAAGAAATCAAAAAT+AGG + chr4_3:9639960-9639979 None:intergenic 15.0%
!! TTTATTGAAAGAATAAGAAT+AGG - chr4_3:9640169-9640188 Msa0628890:intron 15.0%
!! AAATAAGAAATACAAAAAAG+AGG + chr4_3:9640585-9640604 None:intergenic 15.0%
!! GAAAAATAGATATATTATGA+AGG + chr4_3:9640654-9640673 None:intergenic 15.0%
!!! TCAAAAAGAATTTGTTATAA+AGG + chr4_3:9640944-9640963 None:intergenic 15.0%
!!! TTTTACTCATTTTCTTATTT+AGG - chr4_3:9641473-9641492 Msa0628890:intron 15.0%
!! ACTATAGTTAGTATATTATT+AGG - chr4_3:9642154-9642173 Msa0628890:intron 15.0%
!!! CTCTTTCTTTTAATTAAATT+AGG - chr4_3:9642377-9642396 Msa0628890:intron 15.0%
!! TAATATTTAAGCTAATACAA+TGG + chr4_3:9643140-9643159 None:intergenic 15.0%
!!! TTGATTTAAAATATAATTGC+AGG - chr4_3:9643224-9643243 Msa0628890:five_prime_UTR 15.0%
!! GAATAGGAAAAATAAAGTAA+GGG + chr4_3:9636184-9636203 None:intergenic 20.0%
!! TGAATAGGAAAAATAAAGTA+AGG + chr4_3:9636185-9636204 None:intergenic 20.0%
!! AATGAAATCTTACATTGAAT+AGG + chr4_3:9636200-9636219 None:intergenic 20.0%
!!! ACATTGTTATTCCATAAAAT+GGG + chr4_3:9636320-9636339 None:intergenic 20.0%
!!! ATGGAAAAAAGTAATCTTTT+TGG - chr4_3:9636342-9636361 Msa0628890:intron 20.0%
!!! TTGTTGACATTTTTTTTTTG+TGG - chr4_3:9636832-9636851 Msa0628890:intron 20.0%
!!! TGTTGACATTTTTTTTTTGT+GGG - chr4_3:9636833-9636852 Msa0628890:intron 20.0%
!!! TTTGAAATGAATTTATAGAG+TGG - chr4_3:9637285-9637304 Msa0628890:intron 20.0%
!! TTGAAATGAATTTATAGAGT+GGG - chr4_3:9637286-9637305 Msa0628890:intron 20.0%
!! TTACAAGATCAATAATGAAA+TGG + chr4_3:9637474-9637493 None:intergenic 20.0%
!!! AAATTTTTCTTTCAATTCCA+AGG + chr4_3:9637503-9637522 None:intergenic 20.0%
!! TGAACTTTCTTAAATATACA+AGG + chr4_3:9637562-9637581 None:intergenic 20.0%
!!! TTTCATTTCTTTTTCCTAAT+TGG - chr4_3:9637636-9637655 Msa0628890:CDS 20.0%
!! AAATTAGATGATTTCATACA+AGG + chr4_3:9637907-9637926 None:intergenic 20.0%
!!! TTTTATGTGTATGTTTATGA+AGG - chr4_3:9638096-9638115 Msa0628890:CDS 20.0%
!! ACATAAACAACAAAACTTAT+TGG - chr4_3:9639453-9639472 Msa0628890:intron 20.0%
!! GCCTTAAATAATACTTAAAA+AGG - chr4_3:9639500-9639519 Msa0628890:CDS 20.0%
!! TTGGTACTTAATAATTTACA+TGG + chr4_3:9639704-9639723 None:intergenic 20.0%
!! TATTAAGTACCAACTATTAT+TGG - chr4_3:9639711-9639730 Msa0628890:intron 20.0%
!! TAAAAATGTTTACCTGATAA+TGG - chr4_3:9639810-9639829 Msa0628890:intron 20.0%
!!! TTTGATTTCTTCAATTTCTA+CGG - chr4_3:9639963-9639982 Msa0628890:CDS 20.0%
!! AATATCCTTTAAATTCACTA+AGG + chr4_3:9640065-9640084 None:intergenic 20.0%
!! CATAATGACAAATTAGTAAA+TGG + chr4_3:9640545-9640564 None:intergenic 20.0%
!! AAGTATATAGTTGTCTAATT+CGG - chr4_3:9640964-9640983 Msa0628890:CDS 20.0%
!! TAAAAGTCGGATAATATAAT+TGG + chr4_3:9641458-9641477 None:intergenic 20.0%
!! ATAAGAAAATGAGTAAAAGT+CGG + chr4_3:9641471-9641490 None:intergenic 20.0%
!! TCTAGTATTTAGCATAAATA+AGG + chr4_3:9642357-9642376 None:intergenic 20.0%
!! GAAACAAATCATAGTTTATA+TGG - chr4_3:9642399-9642418 Msa0628890:intron 20.0%
!!! TGTTCTTTTGTAAAATATGT+TGG + chr4_3:9642446-9642465 None:intergenic 20.0%
!!! TTATCAATGTCATTTTCATT+TGG - chr4_3:9642782-9642801 Msa0628890:intron 20.0%
!!! ATGAGTTATAGAAACATTTT+TGG - chr4_3:9643070-9643089 Msa0628890:five_prime_UTR 20.0%
! TGAAGTGTAAAATTTGATGA+TGG + chr4_3:9636052-9636071 None:intergenic 25.0%
! TTACATCATCATCAATAACA+AGG - chr4_3:9636139-9636158 Msa0628890:exon 25.0%
!! CATTGTTATTCCATAAAATG+GGG + chr4_3:9636319-9636338 None:intergenic 25.0%
!! CACATTGTTATTCCATAAAA+TGG + chr4_3:9636321-9636340 None:intergenic 25.0%
!! CATTTTATGGAATAACAATG+TGG - chr4_3:9636319-9636338 Msa0628890:CDS 25.0%
!!! TTTTTGGAAAATGAAGTTGT+GGG - chr4_3:9636358-9636377 Msa0628890:intron 25.0%
!!! CTTTGATTTTGTTGTTGTTA+TGG - chr4_3:9636409-9636428 Msa0628890:intron 25.0%
! TATCAACTTCTATAGTACAT+TGG + chr4_3:9636632-9636651 None:intergenic 25.0%
!! GTTATATTGCATTGTTATTC+AGG - chr4_3:9636710-9636729 Msa0628890:intron 25.0%
!!! GTTGACATTTTTTTTTTGTG+GGG - chr4_3:9636834-9636853 Msa0628890:intron 25.0%
!!! GGGGTATTGATTTTTTTTTT+TGG - chr4_3:9636860-9636879 Msa0628890:intron 25.0%
! TTAACTCATCCTTACAAAAT+CGG + chr4_3:9637109-9637128 None:intergenic 25.0%
! TATCTATAACTATTCATCCT+GGG + chr4_3:9637260-9637279 None:intergenic 25.0%
! ATATCTATAACTATTCATCC+TGG + chr4_3:9637261-9637280 None:intergenic 25.0%
! AAGTCAAGTAATTCTCATAT+CGG + chr4_3:9637354-9637373 None:intergenic 25.0%
! AGTATATACCTTAGAAAACA+TGG - chr4_3:9637527-9637546 Msa0628890:intron 25.0%
!!! TTTTCTTTTAAAAGTCCCTT+TGG - chr4_3:9637685-9637704 Msa0628890:intron 25.0%
!! TCTAATTTTCTTGTTACCAT+CGG - chr4_3:9637919-9637938 Msa0628890:intron 25.0%
! AACATACACATAAAAGAAAG+TGG + chr4_3:9638091-9638110 None:intergenic 25.0%
! CTTGTAGTAAGTATATGTTT+AGG - chr4_3:9638120-9638139 Msa0628890:CDS 25.0%
!!! TGTTTTAACTCTCTTGAAAA+AGG - chr4_3:9638359-9638378 Msa0628890:CDS 25.0%
!!! TGTTGTTTTTTATAACGATG+GGG + chr4_3:9638539-9638558 None:intergenic 25.0%
!!! GTGTTGTTTTTTATAACGAT+GGG + chr4_3:9638540-9638559 None:intergenic 25.0%
! AAACAAAAAGATAATGCAAG+AGG - chr4_3:9638658-9638677 Msa0628890:intron 25.0%
! AAATGACAGTTAAAAAGGAA+CGG + chr4_3:9639317-9639336 None:intergenic 25.0%
! GCTCTGCAATAAATAATTAA+GGG + chr4_3:9639420-9639439 None:intergenic 25.0%
!!! GCATTTGATTTTGACTATTT+TGG - chr4_3:9639744-9639763 Msa0628890:intron 25.0%
! AATATCTATAAGCCATTATC+AGG + chr4_3:9639825-9639844 None:intergenic 25.0%
! TAACTCATTTCTATCTTATG+TGG + chr4_3:9640315-9640334 None:intergenic 25.0%
! GATAGAAATGAGTTAAATGA+AGG - chr4_3:9640320-9640339 Msa0628890:intron 25.0%
! TCAAATTTGTAACCATTAAG+TGG + chr4_3:9640465-9640484 None:intergenic 25.0%
! AGTATATAGTTGTCTAATTC+GGG - chr4_3:9640965-9640984 Msa0628890:CDS 25.0%
! TGTAGGAATATGCAATTTAT+TGG - chr4_3:9641137-9641156 Msa0628890:intron 25.0%
! GTAGGAATATGCAATTTATT+GGG - chr4_3:9641138-9641157 Msa0628890:intron 25.0%
! TTAACCTAGAAAAAACACAA+AGG + chr4_3:9641184-9641203 None:intergenic 25.0%
!! AGTTATTTCAATGATTCTGA+TGG - chr4_3:9641259-9641278 Msa0628890:intron 25.0%
! TAGAGATCTTCAAAGTTATT+TGG + chr4_3:9641668-9641687 None:intergenic 25.0%
!! AATGTGTTCTAAATGTAAAG+TGG - chr4_3:9641712-9641731 Msa0628890:intron 25.0%
! AAATTGCAATTCATACTTTG+CGG + chr4_3:9642654-9642673 None:intergenic 25.0%
! GAAAATGACATTGATAAATC+TGG + chr4_3:9642779-9642798 None:intergenic 25.0%
!! CAACTCTTGTATAGTATTTT+TGG - chr4_3:9642890-9642909 Msa0628890:intron 25.0%
!! TTTTGTGAAGAAATATGTTC+TGG - chr4_3:9642937-9642956 Msa0628890:intron 25.0%
!!! AAATATGTTCTGGAAACAAA+AGG - chr4_3:9642947-9642966 Msa0628890:intron 25.0%
!!! AATATGTTCTGGAAACAAAA+GGG - chr4_3:9642948-9642967 Msa0628890:intron 25.0%
!!! TATAGAAACATTTTTGGTGA+AGG - chr4_3:9643076-9643095 Msa0628890:five_prime_UTR 25.0%
AGTTGTATGTTACACAATCT+TGG + chr4_3:9635999-9636018 None:intergenic 30.0%
TTATGGAATAACAATGTGGA+TGG - chr4_3:9636323-9636342 Msa0628890:CDS 30.0%
!! CTTTTTGGAAAATGAAGTTG+TGG - chr4_3:9636357-9636376 Msa0628890:intron 30.0%
GATAGTAAAGATGAAAATCC+AGG - chr4_3:9636542-9636561 Msa0628890:intron 30.0%
TTTGTGTGAGACTGAATATT+TGG - chr4_3:9636656-9636675 Msa0628890:intron 30.0%
TTGTGTGAGACTGAATATTT+GGG - chr4_3:9636657-9636676 Msa0628890:intron 30.0%
!!! ACATTTTTTTTTTGTGGGGT+AGG - chr4_3:9636838-9636857 Msa0628890:intron 30.0%
!!! CATTTTTTTTTTGTGGGGTA+GGG - chr4_3:9636839-9636858 Msa0628890:intron 30.0%
!!! ATTTTTTTTTTGTGGGGTAG+GGG - chr4_3:9636840-9636859 Msa0628890:intron 30.0%
CTAACTGATCCTTACAAAAT+TGG + chr4_3:9637329-9637348 None:intergenic 30.0%
! CAATTTTGTAAGGATCAGTT+AGG - chr4_3:9637327-9637346 Msa0628890:CDS 30.0%
TGATCTTGTAAAATTTGCCT+TGG - chr4_3:9637483-9637502 Msa0628890:intron 30.0%
ATATGACAGAAGTTCATTGT+TGG + chr4_3:9637595-9637614 None:intergenic 30.0%
AACAATGAACTTCTGTCATA+TGG - chr4_3:9637594-9637613 Msa0628890:CDS 30.0%
! TTTCTTTTTCCTAATTGGTG+TGG - chr4_3:9637641-9637660 Msa0628890:CDS 30.0%
ATATAAGAACGAGGAAATTG+AGG + chr4_3:9637825-9637844 None:intergenic 30.0%
TCAATTTCCTCGTTCTTATA+TGG - chr4_3:9637824-9637843 Msa0628890:intron 30.0%
TTCTTATATGGCTACCATAT+TGG - chr4_3:9637836-9637855 Msa0628890:intron 30.0%
TCTTATATGGCTACCATATT+GGG - chr4_3:9637837-9637856 Msa0628890:intron 30.0%
ATCTATAGAAATGCTCTCTA+AGG + chr4_3:9637967-9637986 None:intergenic 30.0%
GTAGTAAGTATATGTTTAGG+AGG - chr4_3:9638123-9638142 Msa0628890:CDS 30.0%
TTTATTGGATCTTCTTTCAG+TGG - chr4_3:9638150-9638169 Msa0628890:intron 30.0%
TTATTGGATCTTCTTTCAGT+GGG - chr4_3:9638151-9638170 Msa0628890:intron 30.0%
!!! TTTGTTTTTCATGTCGCTTT+CGG - chr4_3:9638431-9638450 Msa0628890:CDS 30.0%
ACTATAACTTCGAACAAATC+AGG - chr4_3:9638469-9638488 Msa0628890:intron 30.0%
!!! CGTGTTGTTTTTTATAACGA+TGG + chr4_3:9638541-9638560 None:intergenic 30.0%
AAAGAGAATGTGTTAGAAAG+GGG + chr4_3:9638564-9638583 None:intergenic 30.0%
GAAAGAGAATGTGTTAGAAA+GGG + chr4_3:9638565-9638584 None:intergenic 30.0%
TGAAAGAGAATGTGTTAGAA+AGG + chr4_3:9638566-9638585 None:intergenic 30.0%
AAAACAATTAGAAAGGGACA+TGG + chr4_3:9638601-9638620 None:intergenic 30.0%
! TGTTTTATACAGAAACGTAG+TGG + chr4_3:9638643-9638662 None:intergenic 30.0%
! TTATTTGTTGGTACTGGAAT+GGG - chr4_3:9638799-9638818 Msa0628890:intron 30.0%
!!! ATGTTTTTTTCCCTACAGTA+CGG - chr4_3:9639023-9639042 Msa0628890:intron 30.0%
! ATACCAACCAACTATTTCTT+TGG + chr4_3:9639208-9639227 None:intergenic 30.0%
! AAAGAAATAGTTGGTTGGTA+TGG - chr4_3:9639207-9639226 Msa0628890:intron 30.0%
CGCTCTGCAATAAATAATTA+AGG + chr4_3:9639421-9639440 None:intergenic 30.0%
TAATACTTAAAAAGGAACGG+AGG - chr4_3:9639508-9639527 Msa0628890:CDS 30.0%
! TATGTGTAAATTTTGTGCTC+AGG - chr4_3:9639576-9639595 Msa0628890:intron 30.0%
CTAGGATAACCAATAATAGT+TGG + chr4_3:9639723-9639742 None:intergenic 30.0%
TAGTCAAAATCAAATGCACT+AGG + chr4_3:9639741-9639760 None:intergenic 30.0%
!! TTTGACTATTTTGGACTCTT+TGG - chr4_3:9639753-9639772 Msa0628890:intron 30.0%
! AAGAGAACTTTTCACACTAT+AGG + chr4_3:9639905-9639924 None:intergenic 30.0%
!! TATTGAAAGGCTTTATTGCT+AGG - chr4_3:9640009-9640028 Msa0628890:CDS 30.0%
CTTCTCCTTAGTGAATTTAA+AGG - chr4_3:9640057-9640076 Msa0628890:intron 30.0%
ATGATTGATACTGTTAGGAA+CGG - chr4_3:9640098-9640117 Msa0628890:intron 30.0%
TTACTAGGAATACAGAGAAA+AGG - chr4_3:9640387-9640406 Msa0628890:CDS 30.0%
! AAAGAAATGGTTGTTCTAGA+AGG + chr4_3:9640440-9640459 None:intergenic 30.0%
CCATTAAGTGGATAAAGAAA+TGG + chr4_3:9640453-9640472 None:intergenic 30.0%
CCATTTCTTTATCCACTTAA+TGG - chr4_3:9640450-9640469 Msa0628890:intron 30.0%
GAATTTACACAATAAGTAGG+GGG + chr4_3:9640511-9640530 None:intergenic 30.0%
GGAATTTACACAATAAGTAG+GGG + chr4_3:9640512-9640531 None:intergenic 30.0%
GGGAATTTACACAATAAGTA+GGG + chr4_3:9640513-9640532 None:intergenic 30.0%
AGGGAATTTACACAATAAGT+AGG + chr4_3:9640514-9640533 None:intergenic 30.0%
TTAGTAAATGGACAGTTAGA+GGG + chr4_3:9640533-9640552 None:intergenic 30.0%
ATTAGTAAATGGACAGTTAG+AGG + chr4_3:9640534-9640553 None:intergenic 30.0%
TTAACAGATTTAATCCCTGT+GGG + chr4_3:9640613-9640632 None:intergenic 30.0%
TTTAACAGATTTAATCCCTG+TGG + chr4_3:9640614-9640633 None:intergenic 30.0%
AAGCTCTCAGAAATATTGTT+TGG - chr4_3:9640811-9640830 Msa0628890:CDS 30.0%
ATAGAAAACAGCATTTATGC+CGG + chr4_3:9641061-9641080 None:intergenic 30.0%
! TTTGGTGTATCATCAAAGAT+GGG - chr4_3:9641105-9641124 Msa0628890:intron 30.0%
!!! AACTCCTTTGTGTTTTTTCT+AGG - chr4_3:9641177-9641196 Msa0628890:CDS 30.0%
! ATGATTCTGATGGATAAACT+TGG - chr4_3:9641269-9641288 Msa0628890:intron 30.0%
! TCTTATTTAGGCAGTAACAA+TGG - chr4_3:9641485-9641504 Msa0628890:intron 30.0%
CTTATTTAGGCAGTAACAAT+GGG - chr4_3:9641486-9641505 Msa0628890:intron 30.0%
AGAAAACTTCAACTTGCATT+TGG - chr4_3:9641594-9641613 Msa0628890:intron 30.0%
ACCTTGCTTATGAATTTGAA+AGG - chr4_3:9641619-9641638 Msa0628890:intron 30.0%
!! TTATTTGGTAGTGCAAAAGA+AGG + chr4_3:9641653-9641672 None:intergenic 30.0%
TTCAAATTGAAAGTGGTATC+TGG - chr4_3:9642515-9642534 Msa0628890:intron 30.0%
! TCCTTGACATTTCTTTTAAC+AGG - chr4_3:9642811-9642830 Msa0628890:intron 30.0%
ACCTGTTAAAAGAAATGTCA+AGG + chr4_3:9642815-9642834 None:intergenic 30.0%
GGCAAAATTTCATGTTAAAG+AGG + chr4_3:9643119-9643138 None:intergenic 30.0%
TAGACAAATTAAAGGGATGA+GGG - chr4_3:9643249-9643268 Msa0628890:five_prime_UTR 30.0%
TTGCGTAAGAACGAAATCTA+TGG - chr4_3:9635953-9635972 Msa0628890:three_prime_UTR 35.0%
! TTTATGTGCACCCCATTTTA+TGG - chr4_3:9636306-9636325 Msa0628890:CDS 35.0%
!!! TTTTGTTGTTGTTATGGTGC+AGG - chr4_3:9636415-9636434 Msa0628890:intron 35.0%
TTGAAAGGTAATCTGTTGTG+AGG - chr4_3:9636444-9636463 Msa0628890:intron 35.0%
TCTGTTGTGAGGTTTGTATA+AGG - chr4_3:9636455-9636474 Msa0628890:intron 35.0%
GAATAAATCCCAAAACAGCA+AGG + chr4_3:9636570-9636589 None:intergenic 35.0%
TGTGTGAGACTGAATATTTG+GGG - chr4_3:9636658-9636677 Msa0628890:intron 35.0%
CTGAATATTTGGGGAAGAAA+TGG - chr4_3:9636667-9636686 Msa0628890:intron 35.0%
ATTTGGGGAAGAAATGGAAA+TGG - chr4_3:9636673-9636692 Msa0628890:intron 35.0%
!!! TGGAAATGGCTACTTTTACA+AGG - chr4_3:9636687-9636706 Msa0628890:intron 35.0%
!!! GGAAATGGCTACTTTTACAA+GGG - chr4_3:9636688-9636707 Msa0628890:intron 35.0%
!!! TTTTTTTTTTGTGGGGTAGG+GGG - chr4_3:9636841-9636860 Msa0628890:intron 35.0%
!! AAAATCGGTTTGTAAGGTGA+GGG + chr4_3:9637094-9637113 None:intergenic 35.0%
!! CCTTACAAAATCGGTTTGTA+AGG + chr4_3:9637100-9637119 None:intergenic 35.0%
!! CCTTACAAACCGATTTTGTA+AGG - chr4_3:9637097-9637116 Msa0628890:intron 35.0%
ATGTGGTGCATGGATATAAA+TGG + chr4_3:9637184-9637203 None:intergenic 35.0%
AAAATTGGCTGATAAGGTGA+GGG + chr4_3:9637314-9637333 None:intergenic 35.0%
CCTTACAAAATTGGCTGATA+AGG + chr4_3:9637320-9637339 None:intergenic 35.0%
! CCTTATCAGCCAATTTTGTA+AGG - chr4_3:9637317-9637336 Msa0628890:CDS 35.0%
AAATCAATGAAAGGGAGTCT+TGG + chr4_3:9637410-9637429 None:intergenic 35.0%
! AAGACTGACCATGTTTTCTA+AGG + chr4_3:9637538-9637557 None:intergenic 35.0%
TCACTATTTCCACACCAATT+AGG + chr4_3:9637653-9637672 None:intergenic 35.0%
TTACAAACCAACTCTCCAAA+GGG + chr4_3:9637703-9637722 None:intergenic 35.0%
ATTACAAACCAACTCTCCAA+AGG + chr4_3:9637704-9637723 None:intergenic 35.0%
ACGCACTGAAGATATGAAAA+TGG + chr4_3:9637750-9637769 None:intergenic 35.0%
!! GAGAGCATTTCTATAGATCT+CGG - chr4_3:9637969-9637988 Msa0628890:intron 35.0%
!!! TGTTTAGGAGGTGCTTTTAT+TGG - chr4_3:9638135-9638154 Msa0628890:CDS 35.0%
ATTACTGCTCCAATGATCAT+AGG + chr4_3:9638228-9638247 None:intergenic 35.0%
TGAGCTGCATAATTCCTTAT+AGG - chr4_3:9638254-9638273 Msa0628890:intron 35.0%
GCATCAAAATCCATCTACTT+TGG - chr4_3:9638390-9638409 Msa0628890:CDS 35.0%
TGCAACATCAAAATCTCTCT+GGG - chr4_3:9638759-9638778 Msa0628890:intron 35.0%
!! CTTTTGGGAAGGTTATTTGT+TGG - chr4_3:9638787-9638806 Msa0628890:intron 35.0%
! GTTATTTGTTGGTACTGGAA+TGG - chr4_3:9638798-9638817 Msa0628890:intron 35.0%
ACCAATGTTGTGTTTAGCAT+CGG + chr4_3:9638911-9638930 None:intergenic 35.0%
CTTCAGATTGAATGATGGTT+CGG + chr4_3:9638989-9639008 None:intergenic 35.0%
CAACACTTCAGATTGAATGA+TGG + chr4_3:9638994-9639013 None:intergenic 35.0%
! CATCATTCAATCTGAAGTGT+TGG - chr4_3:9638992-9639011 Msa0628890:intron 35.0%
!!! TGTTTTTTTCCCTACAGTAC+GGG - chr4_3:9639024-9639043 Msa0628890:intron 35.0%
TAAGCTCCACTTGCATTAAT+AGG - chr4_3:9639089-9639108 Msa0628890:intron 35.0%
! AACCAACTATTTCTTTGGCT+GGG + chr4_3:9639203-9639222 None:intergenic 35.0%
GTTGGTATGGAATGTCAAAT+TGG - chr4_3:9639220-9639239 Msa0628890:intron 35.0%
!! TATTTTGGACTCTTTGGTGT+AGG - chr4_3:9639759-9639778 Msa0628890:intron 35.0%
! GACTATATTTTCCTGATGCA+AGG - chr4_3:9639985-9640004 Msa0628890:CDS 35.0%
CTAACAGTATCAATCATCAC+GGG + chr4_3:9640095-9640114 None:intergenic 35.0%
CCTAACAGTATCAATCATCA+CGG + chr4_3:9640096-9640115 None:intergenic 35.0%
AGGAACGGAGTGAAAATAAT+TGG - chr4_3:9640113-9640132 Msa0628890:intron 35.0%
TTCTGAGCAAAGCGAAAAAT+AGG + chr4_3:9640676-9640695 None:intergenic 35.0%
! ATTTTTCGCTTTGCTCAGAA+AGG - chr4_3:9640676-9640695 Msa0628890:intron 35.0%
TCACTGCAAAATGCATTTAG+TGG + chr4_3:9640999-9641018 None:intergenic 35.0%
! CATTTTGCAGTGATGTTCAT+TGG - chr4_3:9641006-9641025 Msa0628890:CDS 35.0%
TGATACACCAAAGCTTTCAA+AGG + chr4_3:9641097-9641116 None:intergenic 35.0%
! CTTTGGTGTATCATCAAAGA+TGG - chr4_3:9641104-9641123 Msa0628890:intron 35.0%
TGAAATAACTGAACCTGAAG+TGG + chr4_3:9641249-9641268 None:intergenic 35.0%
! TTCTGATGGATAAACTTGGA+AGG - chr4_3:9641273-9641292 Msa0628890:intron 35.0%
GCCTTTCAAATTCATAAGCA+AGG + chr4_3:9641623-9641642 None:intergenic 35.0%
! CTTATGAATTTGAAAGGCGT+TGG - chr4_3:9641625-9641644 Msa0628890:intron 35.0%
TAAAGTGGAATATGCAATGC+AGG - chr4_3:9641727-9641746 Msa0628890:intron 35.0%
TATGTGCTATCATTTGCTCT+TGG - chr4_3:9641750-9641769 Msa0628890:intron 35.0%
GATCTTGCCAGGTAATATTT+CGG + chr4_3:9641805-9641824 None:intergenic 35.0%
! CTGTTGAGATCTTTGATAGT+GGG - chr4_3:9641904-9641923 Msa0628890:intron 35.0%
! CCACTTTCAATTTGAAGTGT+TGG + chr4_3:9642511-9642530 None:intergenic 35.0%
CCAACACTTCAAATTGAAAG+TGG - chr4_3:9642508-9642527 Msa0628890:intron 35.0%
GAAGTTGTAAACACATGTGT+CGG + chr4_3:9642550-9642569 None:intergenic 35.0%
!!! CTATGTGTTAGTTTTGTGTC+TGG - chr4_3:9642608-9642627 Msa0628890:intron 35.0%
ATAGCCTAAATGAGCTGAAT+AGG - chr4_3:9643013-9643032 Msa0628890:intron 35.0%
TAGCCTAAATGAGCTGAATA+GGG - chr4_3:9643014-9643033 Msa0628890:intron 35.0%
TGCAGGACTAGACAAATTAA+AGG - chr4_3:9643241-9643260 Msa0628890:five_prime_UTR 35.0%
GCAGGACTAGACAAATTAAA+GGG - chr4_3:9643242-9643261 Msa0628890:five_prime_UTR 35.0%
CTAGACAAATTAAAGGGATG+AGG - chr4_3:9643248-9643267 Msa0628890:five_prime_UTR 35.0%
GCAGTTGAAGAAGAAGAAGA+AGG + chr4_3:9636030-9636049 None:intergenic 40.0%
!! TGGTGCAGGAATTTGTTGAA+AGG - chr4_3:9636429-9636448 Msa0628890:intron 40.0%
! TTTTATTGTTTCGCGATGCG+AGG - chr4_3:9636479-9636498 Msa0628890:intron 40.0%
!! AAATCGGTTTGTAAGGTGAG+GGG + chr4_3:9637093-9637112 None:intergenic 40.0%
!! CAAAATCGGTTTGTAAGGTG+AGG + chr4_3:9637095-9637114 None:intergenic 40.0%
AATATCAGAGCCTTTCCATC+AGG - chr4_3:9637151-9637170 Msa0628890:intron 40.0%
!! ATAAATGGTTGGTAGCCTGA+TGG + chr4_3:9637169-9637188 None:intergenic 40.0%
GGTGCATGGATATAAATGGT+TGG + chr4_3:9637180-9637199 None:intergenic 40.0%
AAATTGGCTGATAAGGTGAG+GGG + chr4_3:9637313-9637332 None:intergenic 40.0%
CAAAATTGGCTGATAAGGTG+AGG + chr4_3:9637315-9637334 None:intergenic 40.0%
! TAAAAGTCCCTTTGGAGAGT+TGG - chr4_3:9637693-9637712 Msa0628890:intron 40.0%
ATGGTAGCCATATAAGAACG+AGG + chr4_3:9637834-9637853 None:intergenic 40.0%
GAAGCGTATCATACCCAATA+TGG + chr4_3:9637853-9637872 None:intergenic 40.0%
! GATGAAAGAGTGTGAAGCTT+TGG + chr4_3:9637877-9637896 None:intergenic 40.0%
! TCTATAGATCTCGGCTTTAG+TGG - chr4_3:9637978-9637997 Msa0628890:intron 40.0%
! CTATAGATCTCGGCTTTAGT+GGG - chr4_3:9637979-9637998 Msa0628890:intron 40.0%
! TATAGATCTCGGCTTTAGTG+GGG - chr4_3:9637980-9637999 Msa0628890:intron 40.0%
TGTGCTTTGCCTATGATCAT+TGG - chr4_3:9638216-9638235 Msa0628890:intron 40.0%
TGATCATTGGAGCAGTAATG+AGG - chr4_3:9638229-9638248 Msa0628890:intron 40.0%
TGTACAGACACAGACCTATA+AGG + chr4_3:9638271-9638290 None:intergenic 40.0%
TTATAGGTCTGTGTCTGTAC+AGG - chr4_3:9638270-9638289 Msa0628890:intron 40.0%
CCAAGACAAACCAAAGTAGA+TGG + chr4_3:9638403-9638422 None:intergenic 40.0%
!! CCATCTACTTTGGTTTGTCT+TGG - chr4_3:9638400-9638419 Msa0628890:CDS 40.0%
GATAATGCAAGAGGTCAAAC+AGG - chr4_3:9638667-9638686 Msa0628890:intron 40.0%
GTGCAACATCAAAATCTCTC+TGG - chr4_3:9638758-9638777 Msa0628890:intron 40.0%
GCAACATCAAAATCTCTCTG+GGG - chr4_3:9638760-9638779 Msa0628890:intron 40.0%
CAACATCAAAATCTCTCTGG+GGG - chr4_3:9638761-9638780 Msa0628890:intron 40.0%
! GGAAGGTTATTTGTTGGTAC+TGG - chr4_3:9638793-9638812 Msa0628890:intron 40.0%
!! GTTGTGTTTAGCATCGGTAT+CGG + chr4_3:9638905-9638924 None:intergenic 40.0%
ACCGATGCTAAACACAACAT+TGG - chr4_3:9638907-9638926 Msa0628890:intron 40.0%
!!! GTTTTTTTCCCTACAGTACG+GGG - chr4_3:9639025-9639044 Msa0628890:intron 40.0%
GTGAGACCTATTAATGCAAG+TGG + chr4_3:9639098-9639117 None:intergenic 40.0%
ACTCAGATTGCAACATGTCT+TGG - chr4_3:9639150-9639169 Msa0628890:intron 40.0%
TGCAACATGTCTTGGAATCA+TGG - chr4_3:9639158-9639177 Msa0628890:intron 40.0%
GCAACATGTCTTGGAATCAT+GGG - chr4_3:9639159-9639178 Msa0628890:intron 40.0%
ATCATGGGTTCGCTCTTTAT+AGG - chr4_3:9639174-9639193 Msa0628890:intron 40.0%
ATCCCAGCCAAAGAAATAGT+TGG - chr4_3:9639198-9639217 Msa0628890:intron 40.0%
! CAACCAACTATTTCTTTGGC+TGG + chr4_3:9639204-9639223 None:intergenic 40.0%
CAGCCAAAGAAATAGTTGGT+TGG - chr4_3:9639202-9639221 Msa0628890:intron 40.0%
GAGGGATAAACGAAGAAGAA+TGG + chr4_3:9639295-9639314 None:intergenic 40.0%
GACAGTTAAAAAGGAACGGA+GGG + chr4_3:9639313-9639332 None:intergenic 40.0%
TGACAGTTAAAAAGGAACGG+AGG + chr4_3:9639314-9639333 None:intergenic 40.0%
! GTGTAAATTTTGTGCTCAGG+TGG - chr4_3:9639579-9639598 Msa0628890:intron 40.0%
! TAAATTTTGTGCTCAGGTGG+CGG - chr4_3:9639582-9639601 Msa0628890:intron 40.0%
TTGACCTTGAAAAGCCAATG+AGG + chr4_3:9639677-9639696 None:intergenic 40.0%
CCGTGATGATTGATACTGTT+AGG - chr4_3:9640093-9640112 Msa0628890:intron 40.0%
CAATTCGCTCTGTTGTAGAA+GGG + chr4_3:9640221-9640240 None:intergenic 40.0%
TCAATTCGCTCTGTTGTAGA+AGG + chr4_3:9640222-9640241 None:intergenic 40.0%
AAACTTGAATGCAAGGGGAA+AGG + chr4_3:9640280-9640299 None:intergenic 40.0%
CACTCAAACTTGAATGCAAG+GGG + chr4_3:9640285-9640304 None:intergenic 40.0%
CCACTCAAACTTGAATGCAA+GGG + chr4_3:9640286-9640305 None:intergenic 40.0%
ACCACTCAAACTTGAATGCA+AGG + chr4_3:9640287-9640306 None:intergenic 40.0%
AGCAAGTCGGACAAATTACT+AGG - chr4_3:9640372-9640391 Msa0628890:CDS 40.0%
AAATTCAGCCTCAGCTTCAA+CGG + chr4_3:9640707-9640726 None:intergenic 40.0%
GCTGAATTTGAGAAGCTCTT+GGG - chr4_3:9640718-9640737 Msa0628890:intron 40.0%
TTTGTCAGTTCACTCATTGC+AGG + chr4_3:9640760-9640779 None:intergenic 40.0%
TATGATGTATACCTCTGGCA+TGG + chr4_3:9640840-9640859 None:intergenic 40.0%
! TCAGCTACCTTTGAAAGCTT+TGG - chr4_3:9641087-9641106 Msa0628890:intron 40.0%
AAGATGGGAAACACATGTGT+AGG - chr4_3:9641120-9641139 Msa0628890:intron 40.0%
CTGCAAGTTCTTATGCATCT+GGG - chr4_3:9641523-9641542 Msa0628890:intron 40.0%
ATTTCGGACATGAGTAGACA+AGG + chr4_3:9641789-9641808 None:intergenic 40.0%
CTCATGTCCGAAATATTACC+TGG - chr4_3:9641795-9641814 Msa0628890:intron 40.0%
AATATGCTTGGCTGTGCATT+GGG - chr4_3:9641842-9641861 Msa0628890:intron 40.0%
CCACTATCAAAGATCTCAAC+AGG + chr4_3:9641906-9641925 None:intergenic 40.0%
CCTGTTGAGATCTTTGATAG+TGG - chr4_3:9641903-9641922 Msa0628890:intron 40.0%
TGTTTAGTCCTAGTCCTAAG+CGG - chr4_3:9641954-9641973 Msa0628890:intron 40.0%
! AGCCTTTACAAGCACTCTTT+TGG + chr4_3:9642016-9642035 None:intergenic 40.0%
TGCAATTCATACTTTGCGGT+CGG + chr4_3:9642650-9642669 None:intergenic 40.0%
ACAGGTGATAAACTTCTTCG+TGG - chr4_3:9642829-9642848 Msa0628890:intron 40.0%
CAGGTGATAAACTTCTTCGT+GGG - chr4_3:9642830-9642849 Msa0628890:intron 40.0%
AGGTGATAAACTTCTTCGTG+GGG - chr4_3:9642831-9642850 Msa0628890:intron 40.0%
!!! GCTATTATTTTTGCGCATGC+TGG - chr4_3:9642853-9642872 Msa0628890:intron 40.0%
TGACCCTATTCAGCTCATTT+AGG + chr4_3:9643020-9643039 None:intergenic 40.0%
ATGAGCTGAATAGGGTCATA+TGG - chr4_3:9643022-9643041 Msa0628890:five_prime_UTR 40.0%
TGAATAGGGTCATATGGATG+AGG - chr4_3:9643028-9643047 Msa0628890:five_prime_UTR 40.0%
GGTCATATGGATGAGGTATA+GGG - chr4_3:9643035-9643054 Msa0628890:five_prime_UTR 40.0%
!!! ATCCAGGTACCTTGCTGTTT+TGG - chr4_3:9636558-9636577 Msa0628890:intron 45.0%
!!! TCCAGGTACCTTGCTGTTTT+GGG - chr4_3:9636559-9636578 Msa0628890:intron 45.0%
ATTAGTCGTCCACCTTTGGT+GGG + chr4_3:9636905-9636924 None:intergenic 45.0%
ATACCCCAACCAAGTTGCTT+GGG + chr4_3:9637039-9637058 None:intergenic 45.0%
AATACCCCAACCAAGTTGCT+TGG + chr4_3:9637040-9637059 None:intergenic 45.0%
ACATCAAGCCCGATAGTGTT+GGG - chr4_3:9637200-9637219 Msa0628890:intron 45.0%
TGGGAAAAAACACAAGTCCC+AGG - chr4_3:9637240-9637259 Msa0628890:intron 45.0%
! TACAGAGTGCCAAACCTTGT+TGG - chr4_3:9637771-9637790 Msa0628890:intron 45.0%
CTCTTTGCGGCATGTAATAG+TGG - chr4_3:9637799-9637818 Msa0628890:intron 45.0%
TTGGATCTTCTTTCAGTGGG+TGG - chr4_3:9638154-9638173 Msa0628890:intron 45.0%
TCATAGGCAAAGCACACAAC+TGG + chr4_3:9638212-9638231 None:intergenic 45.0%
ATGCAAGAGGTCAAACAGGA+AGG - chr4_3:9638671-9638690 Msa0628890:intron 45.0%
! TTGGTACTGGAATGGGACTT+GGG - chr4_3:9638806-9638825 Msa0628890:intron 45.0%
!!! TCAGGTGGCGGATTTGTTTT+TGG - chr4_3:9639594-9639613 Msa0628890:intron 45.0%
!!! CAGGTGGCGGATTTGTTTTT+GGG - chr4_3:9639595-9639614 Msa0628890:intron 45.0%
! TGCTGCACTTGCTCTTTTCA+TGG - chr4_3:9639634-9639653 Msa0628890:intron 45.0%
!!! GAGTCCTCATTGGCTTTTCA+AGG - chr4_3:9639670-9639689 Msa0628890:intron 45.0%
! CCTTTCAATAGCCTTGCATC+AGG + chr4_3:9639999-9640018 None:intergenic 45.0%
CCTGATGCAAGGCTATTGAA+AGG - chr4_3:9639996-9640015 Msa0628890:CDS 45.0%
GAGAGTAGACTCTCTTCCAA+GGG - chr4_3:9640191-9640210 Msa0628890:intron 45.0%
GTTGTAGAAGGGAAAACCCT+TGG + chr4_3:9640210-9640229 None:intergenic 45.0%
! CCCTTGCATTCAAGTTTGAG+TGG - chr4_3:9640283-9640302 Msa0628890:intron 45.0%
TAAGATACGTCCCTGCCTTA+AGG - chr4_3:9640348-9640367 Msa0628890:intron 45.0%
GAGAGAAGACTCTCCTTCAA+GGG - chr4_3:9640409-9640428 Msa0628890:intron 45.0%
CTAGAAGGTGAAACCCTTGA+AGG + chr4_3:9640425-9640444 None:intergenic 45.0%
! TTTCTTATTTGCCCTCCCAC+AGG - chr4_3:9640595-9640614 Msa0628890:intron 45.0%
! TTCTTATTTGCCCTCCCACA+GGG - chr4_3:9640596-9640615 Msa0628890:intron 45.0%
CAGATTTAATCCCTGTGGGA+GGG + chr4_3:9640609-9640628 None:intergenic 45.0%
ACAGATTTAATCCCTGTGGG+AGG + chr4_3:9640610-9640629 None:intergenic 45.0%
GGCTGAATTTGAGAAGCTCT+TGG - chr4_3:9640717-9640736 Msa0628890:intron 45.0%
GAATTTGAGAAGCTCTTGGG+AGG - chr4_3:9640721-9640740 Msa0628890:intron 45.0%
GAACTGACAAAGTCTGACAG+AGG - chr4_3:9640769-9640788 Msa0628890:CDS 45.0%
! TTCTGAGAGCTTCATTGTGC+CGG + chr4_3:9640803-9640822 None:intergenic 45.0%
TTTGCTTTGCAGCAACTGTC+CGG - chr4_3:9641039-9641058 Msa0628890:CDS 45.0%
ATTTATTGGGTATCTGCCGC+TGG - chr4_3:9641151-9641170 Msa0628890:intron 45.0%
ACACAAAGGAGTTAAGCCAG+CGG + chr4_3:9641170-9641189 None:intergenic 45.0%
! CTTCTCCTCGGTAGCTTTTT+AGG - chr4_3:9641302-9641321 Msa0628890:intron 45.0%
GCTGCAAGTTCTTATGCATC+TGG - chr4_3:9641522-9641541 Msa0628890:intron 45.0%
AGTTCTTATGCATCTGGGTC+TGG - chr4_3:9641528-9641547 Msa0628890:intron 45.0%
GGAGCAATGTATCTATCCGT+CGG - chr4_3:9641549-9641568 Msa0628890:intron 45.0%
! CTATCATTTGCTCTTGGTGC+TGG - chr4_3:9641756-9641775 Msa0628890:intron 45.0%
GACATGAGTAGACAAGGAAC+TGG + chr4_3:9641783-9641802 None:intergenic 45.0%
CAAGCATATTGCCATTGCCT+TGG + chr4_3:9641832-9641851 None:intergenic 45.0%
CAAGGCAATGGCAATATGCT+TGG - chr4_3:9641830-9641849 Msa0628890:intron 45.0%
CAATATGCTTGGCTGTGCAT+TGG - chr4_3:9641841-9641860 Msa0628890:intron 45.0%
TCAAAACACCGCTTAGGACT+AGG + chr4_3:9641965-9641984 None:intergenic 45.0%
GGAATCTCAAAACACCGCTT+AGG + chr4_3:9641971-9641990 None:intergenic 45.0%
CATATCTCTGGTCGATGATG+TGG + chr4_3:9641992-9642011 None:intergenic 45.0%
CACATCATCGACCAGAGATA+TGG - chr4_3:9641990-9642009 Msa0628890:intron 45.0%
! CACTCTTTTGGCCATATCTC+TGG + chr4_3:9642004-9642023 None:intergenic 45.0%
!! GGCCAAAAGAGTGCTTGTAA+AGG - chr4_3:9642011-9642030 Msa0628890:intron 45.0%
TCCATTCTCATTGTGTCGTC+AGG - chr4_3:9642081-9642100 Msa0628890:intron 45.0%
CCATTCTCATTGTGTCGTCA+GGG - chr4_3:9642082-9642101 Msa0628890:intron 45.0%
TATTCCAATTGTACTCCCCG+TGG + chr4_3:9642114-9642133 None:intergenic 45.0%
TGACTGCGACGAAACCAAAA+CGG + chr4_3:9642202-9642221 None:intergenic 45.0%
GCAATTCATACTTTGCGGTC+GGG + chr4_3:9642649-9642668 None:intergenic 45.0%
TTTGCGCATGCTGGAACAAA+TGG - chr4_3:9642862-9642881 Msa0628890:intron 45.0%
TTGCGCATGCTGGAACAAAT+GGG - chr4_3:9642863-9642882 Msa0628890:intron 45.0%
AACAAAAGGGAAGTCACTGC+AGG - chr4_3:9642961-9642980 Msa0628890:intron 45.0%
GGGTCATATGGATGAGGTAT+AGG - chr4_3:9643034-9643053 Msa0628890:five_prime_UTR 45.0%
!!! AATTTTTTAAATATTTTTTG+TGG - chr4_3:9640873-9640892 Msa0628890:intron 5.0%
AAGACAGCGAGTCGCATCAA+GGG - chr4_3:9636502-9636521 Msa0628890:intron 50.0%
! TCCCAAAACAGCAAGGTACC+TGG + chr4_3:9636563-9636582 None:intergenic 50.0%
! GATTAGTCGTCCACCTTTGG+TGG + chr4_3:9636906-9636925 None:intergenic 50.0%
CCAAAGGTGGACGACTAATC+CGG - chr4_3:9636906-9636925 Msa0628890:intron 50.0%
AATACCGGGTTCGATTCCCA+GGG + chr4_3:9636976-9636995 None:intergenic 50.0%
!! TGGTTGGTAGCCTGATGGAA+AGG + chr4_3:9637164-9637183 None:intergenic 50.0%
CAACACTATCGGGCTTGATG+TGG + chr4_3:9637201-9637220 None:intergenic 50.0%
CACATCAAGCCCGATAGTGT+TGG - chr4_3:9637199-9637218 Msa0628890:intron 50.0%
CATCAAGCCCGATAGTGTTG+GGG - chr4_3:9637201-9637220 Msa0628890:intron 50.0%
! ATCAAGCCCGATAGTGTTGG+GGG - chr4_3:9637202-9637221 Msa0628890:intron 50.0%
CTCAATCCCCCAACACTATC+GGG + chr4_3:9637211-9637230 None:intergenic 50.0%
CCTCAATCCCCCAACACTAT+CGG + chr4_3:9637212-9637231 None:intergenic 50.0%
! CGATAGTGTTGGGGGATTGA+GGG - chr4_3:9637210-9637229 Msa0628890:intron 50.0%
! GATAGTGTTGGGGGATTGAG+GGG - chr4_3:9637211-9637230 Msa0628890:intron 50.0%
! ATAGTGTTGGGGGATTGAGG+GGG - chr4_3:9637212-9637231 Msa0628890:intron 50.0%
! GGGAGTCTTGGTGCAACAAT+CGG + chr4_3:9637398-9637417 None:intergenic 50.0%
! AGAGTGCCAAACCTTGTTGG+CGG - chr4_3:9637774-9637793 Msa0628890:intron 50.0%
TGACTACTCTGTGTTGCCGA+TGG + chr4_3:9637938-9637957 None:intergenic 50.0%
! CGGCTTTAGTGGGGATACAT+TGG - chr4_3:9637989-9638008 Msa0628890:intron 50.0%
! AGTGGGGATACATTGGCTGA+AGG - chr4_3:9637996-9638015 Msa0628890:intron 50.0%
TTCAGTGGGTGGATAGCAGA+TGG - chr4_3:9638165-9638184 Msa0628890:intron 50.0%
TCAGTGGGTGGATAGCAGAT+GGG - chr4_3:9638166-9638185 Msa0628890:intron 50.0%
!! ATCTCTCTGGGGGATGCTTT+TGG - chr4_3:9638771-9638790 Msa0628890:intron 50.0%
!! TCTCTCTGGGGGATGCTTTT+GGG - chr4_3:9638772-9638791 Msa0628890:intron 50.0%
! GTTGGTACTGGAATGGGACT+TGG - chr4_3:9638805-9638824 Msa0628890:intron 50.0%
ACATAAAGAGCTGCAACCGG+CGG + chr4_3:9638832-9638851 None:intergenic 50.0%
GCCACATAAAGAGCTGCAAC+CGG + chr4_3:9638835-9638854 None:intergenic 50.0%
TGCAGCTCTTTATGTGGCTG+AGG - chr4_3:9638837-9638856 Msa0628890:intron 50.0%
GTGTCTGACATCGACACATG+TGG + chr4_3:9638967-9638986 None:intergenic 50.0%
CAAAGTGACCCCGTACTGTA+GGG + chr4_3:9639036-9639055 None:intergenic 50.0%
ACAAAGTGACCCCGTACTGT+AGG + chr4_3:9639037-9639056 None:intergenic 50.0%
AAAGAGCAAGTGCAGCAGCA+GGG + chr4_3:9639631-9639650 None:intergenic 50.0%
AAAAGAGCAAGTGCAGCAGC+AGG + chr4_3:9639632-9639651 None:intergenic 50.0%
TCTGTGCAGAGAGTCCTCAT+TGG - chr4_3:9639660-9639679 Msa0628890:intron 50.0%
GGAGAGTAGACTCTCTTCCA+AGG - chr4_3:9640190-9640209 Msa0628890:intron 50.0%
!! TTGTCCGACTTGCTGCCTTA+AGG + chr4_3:9640366-9640385 None:intergenic 50.0%
GGAGAGAAGACTCTCCTTCA+AGG - chr4_3:9640408-9640427 Msa0628890:intron 50.0%
AATAAGTAGGGGGCTGCAAG+GGG + chr4_3:9640501-9640520 None:intergenic 50.0%
CAATAAGTAGGGGGCTGCAA+GGG + chr4_3:9640502-9640521 None:intergenic 50.0%
ACAATAAGTAGGGGGCTGCA+AGG + chr4_3:9640503-9640522 None:intergenic 50.0%
AGGAAGAACCGTTGAAGCTG+AGG - chr4_3:9640696-9640715 Msa0628890:intron 50.0%
TCTGACAGAGGTGATGAGTC+CGG - chr4_3:9640781-9640800 Msa0628890:CDS 50.0%
!! GGAAGGAAAGTGCTTCTCCT+CGG - chr4_3:9641290-9641309 Msa0628890:intron 50.0%
CCATGCCTAAAAAGCTACCG+AGG + chr4_3:9641310-9641329 None:intergenic 50.0%
!! CCTCGGTAGCTTTTTAGGCA+TGG - chr4_3:9641307-9641326 Msa0628890:intron 50.0%
GCAATGTATCTATCCGTCGG+TGG - chr4_3:9641552-9641571 Msa0628890:intron 50.0%
TTACAGCAACATGCCACCGA+CGG + chr4_3:9641568-9641587 None:intergenic 50.0%
CAAGATCAGAGCCAAGGCAA+TGG - chr4_3:9641818-9641837 Msa0628890:intron 50.0%
CCCTGACGACACAATGAGAA+TGG + chr4_3:9642085-9642104 None:intergenic 50.0%
TAGGCCGAAGTCAACCACTT+TGG - chr4_3:9642173-9642192 Msa0628890:intron 50.0%
! GTGGCCAAAGTGGTTGACTT+CGG + chr4_3:9642180-9642199 None:intergenic 50.0%
! AACCACTTTGGCCACCGTTT+TGG - chr4_3:9642185-9642204 Msa0628890:intron 50.0%
AACCAAAACGGTGGCCAAAG+TGG + chr4_3:9642190-9642209 None:intergenic 50.0%
GAAGACAGCGAGTCGCATCA+AGG - chr4_3:9636501-9636520 Msa0628890:intron 55.0%
ACCAGTTTCCGACCCACCAA+AGG - chr4_3:9636890-9636909 Msa0628890:intron 55.0%
! ACCTTTGGTGGGTCGGAAAC+TGG + chr4_3:9636894-9636913 None:intergenic 55.0%
AGTTTCCGACCCACCAAAGG+TGG - chr4_3:9636893-9636912 Msa0628890:intron 55.0%
!! CCGGATTAGTCGTCCACCTT+TGG + chr4_3:9636909-9636928 None:intergenic 55.0%
! CTAATCCGGCTCGTACGTAG+AGG - chr4_3:9636920-9636939 Msa0628890:intron 55.0%
! GTACGTAGAGGCATGCGTAC+TGG - chr4_3:9636932-9636951 Msa0628890:intron 55.0%
! AAGCGTTGTTCGTTCCCCCT+GGG - chr4_3:9636957-9636976 Msa0628890:intron 55.0%
ATACCGGGTTCGATTCCCAG+GGG + chr4_3:9636975-9636994 None:intergenic 55.0%
GAATACCGGGTTCGATTCCC+AGG + chr4_3:9636977-9636996 None:intergenic 55.0%
GAATCGAACCCGGTATTCCC+CGG - chr4_3:9636979-9636998 Msa0628890:intron 55.0%
AATCGAACCCGGTATTCCCC+GGG - chr4_3:9636980-9636999 Msa0628890:intron 55.0%
TGGAGCCCAAGCAACTTGGT+TGG - chr4_3:9637031-9637050 Msa0628890:intron 55.0%
GGAGCCCAAGCAACTTGGTT+GGG - chr4_3:9637032-9637051 Msa0628890:intron 55.0%
GAGCCCAAGCAACTTGGTTG+GGG - chr4_3:9637033-9637052 Msa0628890:intron 55.0%
ATCGGGCTTGATGTGGTGCA+TGG + chr4_3:9637194-9637213 None:intergenic 55.0%
! CCGATAGTGTTGGGGGATTG+AGG - chr4_3:9637209-9637228 Msa0628890:intron 55.0%
! GGGGATTGAGGGGGTGTATT+GGG - chr4_3:9637221-9637240 Msa0628890:intron 55.0%
CAGTGGGTGGATAGCAGATG+GGG - chr4_3:9638167-9638186 Msa0628890:intron 55.0%
GGTGGATAGCAGATGGGGTT+GGG - chr4_3:9638172-9638191 Msa0628890:intron 55.0%
!! TCTGGGGGATGCTTTTGGGA+AGG - chr4_3:9638776-9638795 Msa0628890:intron 55.0%
GCCGGTTGCAGCTCTTTATG+TGG - chr4_3:9638831-9638850 Msa0628890:intron 55.0%
! CAGCTGTGCGGGGTACTTAT+GGG - chr4_3:9639121-9639140 Msa0628890:intron 55.0%
! AGCTGTGCGGGGTACTTATG+GGG - chr4_3:9639122-9639141 Msa0628890:intron 55.0%
!! CGACTTGCTGCCTTAAGGCA+GGG + chr4_3:9640361-9640380 None:intergenic 55.0%
CCTGCCTTAAGGCAGCAAGT+CGG - chr4_3:9640359-9640378 Msa0628890:intron 55.0%
TTGTTTGGCTGCCATGCCAG+AGG - chr4_3:9640826-9640845 Msa0628890:CDS 55.0%
! CTTGTTGTGCACGCCACTTC+AGG - chr4_3:9641233-9641252 Msa0628890:intron 55.0%
CGGTGGCATGTTGCTGTAAG+TGG - chr4_3:9641569-9641588 Msa0628890:intron 55.0%
ACCTGGCAAGATCAGAGCCA+AGG - chr4_3:9641812-9641831 Msa0628890:intron 55.0%
TGTCGTCAGGGATCTTGCCA+CGG - chr4_3:9642094-9642113 Msa0628890:intron 55.0%
! CTTGCCACGGGGAGTACAAT+TGG - chr4_3:9642107-9642126 Msa0628890:intron 55.0%
CTGCGACGAAACCAAAACGG+TGG + chr4_3:9642199-9642218 None:intergenic 55.0%
! GTCGTCCACCTTTGGTGGGT+CGG + chr4_3:9636901-9636920 None:intergenic 60.0%
GCATGCCTCTACGTACGAGC+CGG + chr4_3:9636928-9636947 None:intergenic 60.0%
CAGGGGGAACGAACAACGCT+TGG + chr4_3:9636958-9636977 None:intergenic 60.0%
! CAAGCGTTGTTCGTTCCCCC+TGG - chr4_3:9636956-9636975 Msa0628890:intron 60.0%
TTCCCCCTGGGAATCGAACC+CGG - chr4_3:9636969-9636988 Msa0628890:intron 60.0%
TACCGGGTTCGATTCCCAGG+GGG + chr4_3:9636974-9636993 None:intergenic 60.0%
AGGACGTACCCGGGGAATAC+CGG + chr4_3:9636991-9637010 None:intergenic 60.0%
GTATTCCCCGGGTACGTCCT+TGG - chr4_3:9636991-9637010 Msa0628890:intron 60.0%
TCCTTCCAAGGACGTACCCG+GGG + chr4_3:9636999-9637018 None:intergenic 60.0%
CTCCTTCCAAGGACGTACCC+GGG + chr4_3:9637000-9637019 None:intergenic 60.0%
GCTCCTTCCAAGGACGTACC+CGG + chr4_3:9637001-9637020 None:intergenic 60.0%
GTGGCAAGGAGCTCCTTCCA+AGG + chr4_3:9637011-9637030 None:intergenic 60.0%
TGGAAGGAGCTCCTTGCCAC+TGG - chr4_3:9637011-9637030 Msa0628890:intron 60.0%
TTGCTTGGGCTCCAGTGGCA+AGG + chr4_3:9637025-9637044 None:intergenic 60.0%
CCAAGTTGCTTGGGCTCCAG+TGG + chr4_3:9637030-9637049 None:intergenic 60.0%
CCACTGGAGCCCAAGCAACT+TGG - chr4_3:9637027-9637046 Msa0628890:intron 60.0%
! GGGGGATTGAGGGGGTGTAT+TGG - chr4_3:9637220-9637239 Msa0628890:intron 60.0%
!! AGAGCGCCGCCAACAAGGTT+TGG + chr4_3:9637783-9637802 None:intergenic 60.0%
CTTGTTGGCGGCGCTCTTTG+CGG - chr4_3:9637786-9637805 Msa0628890:intron 60.0%
GGGTGGATAGCAGATGGGGT+TGG - chr4_3:9638171-9638190 Msa0628890:intron 60.0%
AGGTCTCACCTCCAGCTGTG+CGG - chr4_3:9639109-9639128 Msa0628890:intron 60.0%
TAAGTACCCCGCACAGCTGG+AGG + chr4_3:9639120-9639139 None:intergenic 60.0%
CCATAAGTACCCCGCACAGC+TGG + chr4_3:9639123-9639142 None:intergenic 60.0%
! CCAGCTGTGCGGGGTACTTA+TGG - chr4_3:9639120-9639139 Msa0628890:intron 60.0%
! GCTGTGCGGGGTACTTATGG+GGG - chr4_3:9639123-9639142 Msa0628890:intron 60.0%
!! CCGACTTGCTGCCTTAAGGC+AGG + chr4_3:9640362-9640381 None:intergenic 60.0%
!! GCCTTGGCTCTGATCTTGCC+AGG + chr4_3:9641816-9641835 None:intergenic 60.0%
GTCGTCAGGGATCTTGCCAC+GGG - chr4_3:9642095-9642114 Msa0628890:intron 60.0%
TCGTCAGGGATCTTGCCACG+GGG - chr4_3:9642096-9642115 Msa0628890:intron 60.0%
GGACGTACCCGGGGAATACC+GGG + chr4_3:9636990-9637009 None:intergenic 65.0%
TCCCCGGGTACGTCCTTGGA+AGG - chr4_3:9636995-9637014 Msa0628890:intron 65.0%
!! CGCAAAGAGCGCCGCCAACA+AGG + chr4_3:9637788-9637807 None:intergenic 65.0%
TGGAATGGGACTTGGGCCGC+CGG - chr4_3:9638813-9638832 Msa0628890:intron 65.0%
GGTCTCACCTCCAGCTGTGC+GGG - chr4_3:9639110-9639129 Msa0628890:intron 65.0%
GTCTCACCTCCAGCTGTGCG+GGG - chr4_3:9639111-9639130 Msa0628890:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 9635864 9643312 9635864 ID=Msa0628890;Name=Msa0628890
chr4_3 mRNA 9635864 9643312 9635864 ID=Msa0628890-mRNA-1;Parent=Msa0628890;Name=Msa0628890-mRNA-1;_AED=0.17;_eAED=0.17;_QI=354|0.78|0.86|0.93|0.78|0.73|15|291|491
chr4_3 exon 9635864 9636343 9635864 ID=Msa0628890-mRNA-1:exon:2931;Parent=Msa0628890-mRNA-1
chr4_3 exon 9637313 9637427 9637313 ID=Msa0628890-mRNA-1:exon:2930;Parent=Msa0628890-mRNA-1
chr4_3 exon 9637593 9637681 9637593 ID=Msa0628890-mRNA-1:exon:2929;Parent=Msa0628890-mRNA-1
chr4_3 exon 9637848 9637921 9637848 ID=Msa0628890-mRNA-1:exon:2928;Parent=Msa0628890-mRNA-1
chr4_3 exon 9638017 9638160 9638017 ID=Msa0628890-mRNA-1:exon:2927;Parent=Msa0628890-mRNA-1
chr4_3 exon 9638329 9638482 9638329 ID=Msa0628890-mRNA-1:exon:2926;Parent=Msa0628890-mRNA-1
chr4_3 exon 9639485 9639578 9639485 ID=Msa0628890-mRNA-1:exon:2925;Parent=Msa0628890-mRNA-1
chr4_3 exon 9639953 9640065 9639953 ID=Msa0628890-mRNA-1:exon:2924;Parent=Msa0628890-mRNA-1
chr4_3 exon 9640368 9640417 9640368 ID=Msa0628890-mRNA-1:exon:2923;Parent=Msa0628890-mRNA-1
chr4_3 exon 9640765 9640853 9640765 ID=Msa0628890-mRNA-1:exon:2922;Parent=Msa0628890-mRNA-1
chr4_3 exon 9640926 9641058 9640926 ID=Msa0628890-mRNA-1:exon:2921;Parent=Msa0628890-mRNA-1
chr4_3 exon 9641159 9641226 9641159 ID=Msa0628890-mRNA-1:exon:2920;Parent=Msa0628890-mRNA-1
chr4_3 exon 9641318 9641411 9641318 ID=Msa0628890-mRNA-1:exon:2919;Parent=Msa0628890-mRNA-1
chr4_3 exon 9642613 9642739 9642613 ID=Msa0628890-mRNA-1:exon:2918;Parent=Msa0628890-mRNA-1
chr4_3 exon 9643016 9643312 9643016 ID=Msa0628890-mRNA-1:exon:2917;Parent=Msa0628890-mRNA-1
chr4_3 five_prime_UTR 9643016 9643312 9643016 ID=Msa0628890-mRNA-1:five_prime_utr;Parent=Msa0628890-mRNA-1
chr4_3 five_prime_UTR 9642683 9642739 9642683 ID=Msa0628890-mRNA-1:five_prime_utr;Parent=Msa0628890-mRNA-1
chr4_3 CDS 9642613 9642682 9642613 ID=Msa0628890-mRNA-1:cds;Parent=Msa0628890-mRNA-1
chr4_3 CDS 9641318 9641411 9641318 ID=Msa0628890-mRNA-1:cds;Parent=Msa0628890-mRNA-1
chr4_3 CDS 9641159 9641226 9641159 ID=Msa0628890-mRNA-1:cds;Parent=Msa0628890-mRNA-1
chr4_3 CDS 9640926 9641058 9640926 ID=Msa0628890-mRNA-1:cds;Parent=Msa0628890-mRNA-1
chr4_3 CDS 9640765 9640853 9640765 ID=Msa0628890-mRNA-1:cds;Parent=Msa0628890-mRNA-1
chr4_3 CDS 9640368 9640417 9640368 ID=Msa0628890-mRNA-1:cds;Parent=Msa0628890-mRNA-1
chr4_3 CDS 9639953 9640065 9639953 ID=Msa0628890-mRNA-1:cds;Parent=Msa0628890-mRNA-1
chr4_3 CDS 9639485 9639578 9639485 ID=Msa0628890-mRNA-1:cds;Parent=Msa0628890-mRNA-1
chr4_3 CDS 9638329 9638482 9638329 ID=Msa0628890-mRNA-1:cds;Parent=Msa0628890-mRNA-1
chr4_3 CDS 9638017 9638160 9638017 ID=Msa0628890-mRNA-1:cds;Parent=Msa0628890-mRNA-1
chr4_3 CDS 9637848 9637921 9637848 ID=Msa0628890-mRNA-1:cds;Parent=Msa0628890-mRNA-1
chr4_3 CDS 9637593 9637681 9637593 ID=Msa0628890-mRNA-1:cds;Parent=Msa0628890-mRNA-1
chr4_3 CDS 9637313 9637427 9637313 ID=Msa0628890-mRNA-1:cds;Parent=Msa0628890-mRNA-1
chr4_3 CDS 9636155 9636343 9636155 ID=Msa0628890-mRNA-1:cds;Parent=Msa0628890-mRNA-1
chr4_3 three_prime_UTR 9635864 9636154 9635864 ID=Msa0628890-mRNA-1:three_prime_utr;Parent=Msa0628890-mRNA-1
Gene Sequence

>Msa0628890

ATGCGAGGAAGACAGCGAGTCGCATCAAGGGAATACTTAATTGTGCATGATAGTAAAGATGAAAATCCAGTGCGTGTACAGAGTGCCAAACCTTGTTGGCGGCGCTCTTTGCGGCATGTAATAGTGGCCTCAATTTCCTCGTTCTTATATGGCTACCATATTGGAGTAGTCAATGAAACCTTAGAGAGCATTTCTATAGATCTCGGCTTTAGTGGGGATACATTGGCTGAAGGTCTTGTAGTAAGTATATGTTTAGGAGGTGCTTTTATTGGATCTTCTTTCAGTGGGTGGATAGCAGATGGGGTTGGGCGTAGAAGAAGTTTCCAGTTGTGTGCTTTGCCTATGATCATTGGAGCAGTAATGAGCATTAAGCGTAAAAATGTAGATTCAAACAAATTTCATGTTTTAACTCTCTTGAAAAAGGCACATGAAGCATCAAAATCCATCTACTTTGTGCAACATCAAAATCTCTCTGGGGGATGCTTTTGGGAAGGTTATTTGTTGGTCTCACCTCCAGCTGTGCGGGGTACTTATGGGGGATTAACTCAGATTGCAACATGTCTTGGAATCATGGGTTCGCTCTTTATAGGAATCCCAGCCAAAGAAATAGTTGGTTGGTGGCGGATTTGTTTTTGGGTATCTGTCATCCCTGCTGCTGCACTTGCTCTTTTCATGGAGATCTGTGCAGAGAGTCCTCATTGGCTTTTCAAGAAAGGAAGAACCGTTGAAGCTGAGGCTGAATTTGAGAAGCTCTTGGGAGGACTACATGTGAAACCTGCAATGAGTGAACTGACAAAGTCTGACAGAGGTGATGAGTCCGGCACAATGAAGCTCTCAGAAATATTGTTTGGCTGCCATGCCAGAGTGATGTTCATTGGATCTGCGCTTTTTGCTTTGCAGCAACTGTCCGGCATAAATGCTGTTTTCTATTTCTCTTCAGCTACCTTTGAAAGCTTTGGTGTATCATCAAAGATGGGAAACACATGTGTAGGAATATGCAATTTATTGGGTTCAGTTATTTCAATGATTCTGATGGATAAACTTGGAAGGAAAGTGCTTCTCCTCGGTAGCTTTTTAGGCATGGCAGTAACAATGGGTCTGCAAGTGATTGCTGCAAGTTCTTATGCATCTGGGTCTGGAGCAATGTATCTATCCGTCGGTGGCATGTTGCTGTATGTGCTATCATTTGCTCTTGGTGCTGGTCCAGTTCCTTGTCTACTCATGTCCGAAATATTACCTGGCAAGATCAGAGCCAAGGCAATGGCAATATGCTTGGCTGTGCATTGGGTGATAAACTTCTTCGTGGGGCTATTATTTTTGCGCATGCTGGAACAAATGGGAGCACAACTCTTGTATAGTATTTTTGGTTCATTTTCTTTGTTAGCTGTGATTTTTGTGAAGAAATATGTTCTGGAAACAAAAGGGAAGTCACTGCAGGAAATTGAGATTGCACTTCTTGCACAAGAAATAGCCTAA
Protein sequence

>Msa0628890

MRGRQRVASREYLIVHDSKDENPVRVQSAKPCWRRSLRHVIVASISSFLYGYHIGVVNETLESISIDLGFSGDTLAEGLVVSICLGGAFIGSSFSGWIADGVGRRRSFQLCALPMIIGAVMSIKRKNVDSNKFHVLTLLKKAHEASKSIYFVQHQNLSGGCFWEGYLLVSPPAVRGTYGGLTQIATCLGIMGSLFIGIPAKEIVGWWRICFWVSVIPAAALALFMEICAESPHWLFKKGRTVEAEAEFEKLLGGLHVKPAMSELTKSDRGDESGTMKLSEILFGCHARVMFIGSALFALQQLSGINAVFYFSSATFESFGVSSKMGNTCVGICNLLGSVISMILMDKLGRKVLLLGSFLGMAVTMGLQVIAASSYASGSGAMYLSVGGMLLYVLSFALGAGPVPCLLMSEILPGKIRAKAMAICLAVHWVINFFVGLLFLRMLEQMGAQLLYSIFGSFSLLAVIFVKKYVLETKGKSLQEIEIALLAQEIA*