Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294150 | XP_024631864.1 | 95.349 | 43 | 2 | 0 | 1 | 43 | 1 | 43 | 5.70e-20 | 87.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294150 | A0A396JEY5 | 95.349 | 43 | 2 | 0 | 1 | 43 | 1 | 43 | 2.72e-20 | 87.0 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015680 | Msa0294150 | 0.803032 | 4.229894e-49 | -8.615850e-47 |
| Msa0040450 | Msa0294150 | 0.801345 | 9.405599e-49 | -8.615850e-47 |
| Msa0047160 | Msa0294150 | 0.801052 | 1.080129e-48 | -8.615850e-47 |
| Msa0056030 | Msa0294150 | 0.819365 | 1.206905e-52 | -8.615850e-47 |
| Msa0057140 | Msa0294150 | 0.805713 | 1.169010e-49 | -8.615850e-47 |
| Msa0069310 | Msa0294150 | 0.808822 | 2.564016e-50 | -8.615850e-47 |
| Msa0081930 | Msa0294150 | 0.803310 | 3.705629e-49 | -8.615850e-47 |
| Msa0094470 | Msa0294150 | 0.802416 | 5.669420e-49 | -8.615850e-47 |
| Msa0094920 | Msa0294150 | 0.804929 | 1.706428e-49 | -8.615850e-47 |
| Msa0099510 | Msa0294150 | 0.816646 | 4.967186e-52 | -8.615850e-47 |
| Msa0216240 | Msa0294150 | 0.800728 | 1.257746e-48 | -8.615850e-47 |
| Msa0226470 | Msa0294150 | 0.813404 | 2.603583e-51 | -8.615850e-47 |
| Msa0227400 | Msa0294150 | 0.829390 | 5.286428e-55 | -8.615850e-47 |
| Msa0260210 | Msa0294150 | 0.800705 | 1.271306e-48 | -8.615850e-47 |
| Msa0294150 | Msa0304290 | 0.802760 | 4.815178e-49 | -8.615850e-47 |
| Msa0294150 | Msa0304330 | 0.806788 | 6.939881e-50 | -8.615850e-47 |
| Msa0294150 | Msa0305890 | 0.801306 | 9.582717e-49 | -8.615850e-47 |
| Msa0294150 | Msa0309770 | 0.803659 | 3.136215e-49 | -8.615850e-47 |
| Msa0294150 | Msa0340810 | 0.801562 | 8.490677e-49 | -8.615850e-47 |
| Msa0294150 | Msa0372670 | 0.806511 | 7.938406e-50 | -8.615850e-47 |
| Msa0294150 | Msa0419520 | 0.809757 | 1.616290e-50 | -8.615850e-47 |
| Msa0294150 | Msa0465550 | 0.824952 | 6.108337e-54 | -8.615850e-47 |
| Msa0294150 | Msa0467960 | -0.804833 | 1.786830e-49 | -8.615850e-47 |
| Msa0294150 | Msa0484780 | 0.818082 | 2.359622e-52 | -8.615850e-47 |
| Msa0294150 | Msa0485120 | 0.805902 | 1.066883e-49 | -8.615850e-47 |
| Msa0294150 | Msa0511490 | 0.809615 | 1.733181e-50 | -8.615850e-47 |
| Msa0294150 | Msa0545060 | 0.806641 | 7.454009e-50 | -8.615850e-47 |
| Msa0294150 | Msa0547400 | 0.823492 | 1.345050e-53 | -8.615850e-47 |
| Msa0294150 | Msa0568820 | 0.812473 | 4.166282e-51 | -8.615850e-47 |
| Msa0294150 | Msa0602120 | 0.824190 | 9.231427e-54 | -8.615850e-47 |
| Msa0294150 | Msa0619070 | 0.811859 | 5.671255e-51 | -8.615850e-47 |
| Msa0294150 | Msa0619470 | 0.811209 | 7.849358e-51 | -8.615850e-47 |
| Msa0294150 | Msa0633840 | 0.812842 | 3.458733e-51 | -8.615850e-47 |
| Msa0294150 | Msa0643250 | 0.820702 | 5.966336e-53 | -8.615850e-47 |
| Msa0294150 | Msa0659600 | 0.804179 | 2.445509e-49 | -8.615850e-47 |
| Msa0294150 | Msa0682950 | 0.811062 | 8.447040e-51 | -8.615850e-47 |
| Msa0294150 | Msa0684500 | 0.803829 | 2.891919e-49 | -8.615850e-47 |
| Msa0294150 | Msa0693380 | 0.828972 | 6.676399e-55 | -8.615850e-47 |
| Msa0294150 | Msa0694840 | 0.808223 | 3.441886e-50 | -8.615850e-47 |
| Msa0294150 | Msa0726830 | 0.806728 | 7.143857e-50 | -8.615850e-47 |
| Msa0294150 | Msa0726860 | 0.809819 | 1.567302e-50 | -8.615850e-47 |
| Msa0294150 | Msa0750430 | 0.818808 | 1.615358e-52 | -8.615850e-47 |
| Msa0294150 | Msa0824660 | 0.805531 | 1.276324e-49 | -8.615850e-47 |
| Msa0294150 | Msa0881020 | 0.808337 | 3.254126e-50 | -8.615850e-47 |
| Msa0294150 | Msa0881030 | 0.816363 | 5.748744e-52 | -8.615850e-47 |
| Msa0294150 | Msa0909010 | 0.806212 | 9.177825e-50 | -8.615850e-47 |
| Msa0294150 | Msa1009750 | 0.802029 | 6.809823e-49 | -8.615850e-47 |
| Msa0294150 | Msa1014420 | 0.808670 | 2.763653e-50 | -8.615850e-47 |
| Msa0294150 | Msa1021540 | 0.815892 | 7.323495e-52 | -8.615850e-47 |
| Msa0294150 | Msa1082500 | 0.815624 | 8.404101e-52 | -8.615850e-47 |
| Msa0294150 | Msa1093330 | 0.809315 | 2.011166e-50 | -8.615850e-47 |
| Msa0294150 | Msa1097820 | 0.804559 | 2.038540e-49 | -8.615850e-47 |
| Msa0294150 | Msa1125470 | 0.813576 | 2.387247e-51 | -8.615850e-47 |
| Msa0294150 | Msa1125550 | 0.819964 | 8.808644e-53 | -8.615850e-47 |
| Msa0294150 | Msa1171870 | 0.805288 | 1.435067e-49 | -8.615850e-47 |
| Msa0294150 | Msa1179950 | 0.807690 | 4.468092e-50 | -8.615850e-47 |
| Msa0294150 | Msa1179980 | 0.802756 | 4.823732e-49 | -8.615850e-47 |
| Msa0294150 | Msa1190890 | -0.810998 | 8.722377e-51 | -8.615850e-47 |
| Msa0294150 | Msa1270690 | 0.800144 | 1.653809e-48 | -8.615850e-47 |
| Msa0294150 | Msa1276190 | 0.817827 | 2.694626e-52 | -8.615850e-47 |
| Msa0294150 | Msa1306430 | 0.803747 | 3.007372e-49 | -8.615850e-47 |
| Msa0294150 | Msa1306990 | 0.811734 | 6.036740e-51 | -8.615850e-47 |
| Msa0294150 | Msa1340260 | 0.827634 | 1.403941e-54 | -8.615850e-47 |
| Msa0294150 | Msa1343070 | 0.814308 | 1.646089e-51 | -8.615850e-47 |
| Msa0294150 | Msa1355700 | 0.809768 | 1.606919e-50 | -8.615850e-47 |
| Msa0294150 | Msa1356440 | 0.802408 | 5.690300e-49 | -8.615850e-47 |
| Msa0294150 | Msa1371430 | 0.802798 | 4.728787e-49 | -8.615850e-47 |
| Msa0294150 | Msa1386230 | 0.809282 | 2.043815e-50 | -8.615850e-47 |
| Msa0294150 | Msa1388860 | 0.808246 | 3.403941e-50 | -8.615850e-47 |
| Msa0294150 | Msa1435370 | 0.812974 | 3.235750e-51 | -8.615850e-47 |
| Msa0294150 | Msa1439960 | 0.800046 | 1.731728e-48 | -8.615850e-47 |
| Msa0294150 | Msa1440910 | 0.810512 | 1.111192e-50 | -8.615850e-47 |
| Msa0294150 | Msa1442700 | 0.823665 | 1.225662e-53 | -8.615850e-47 |
| Msa0294150 | Msa1461280 | 0.803445 | 3.474093e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294150 | MtrunA17_Chr2g0315721 | 95.349 | 43 | 2 | 0 | 1 | 43 | 1 | 43 | 5.24e-24 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294150 | AT1G10865.2 | 60.870 | 46 | 18 | 0 | 1 | 46 | 1 | 46 | 6.36e-13 | 58.9 |
| Msa0294150 | AT1G10865.1 | 60.870 | 46 | 18 | 0 | 1 | 46 | 1 | 46 | 7.30e-13 | 59.3 |
Find 32 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTAATCCTTTGCAAGACT+TGG | 0.367609 | 2_3:-45764465 | None:intergenic |
| CAGTGAATCTGATTGTGTTA+AGG | 0.440858 | 2_3:+45764508 | Msa0294150:CDS |
| GCGCCACGTGTCGGCTGGTA+TGG | 0.442942 | 2_3:+45765437 | Msa0294150:CDS |
| CACGGCACCATACTCAGATA+TGG | 0.443293 | 2_3:+45765412 | Msa0294150:CDS |
| AAGCTCTGATAGCAGCTGTT+AGG | 0.455811 | 2_3:-45765557 | None:intergenic |
| CCACGTGTCGGCTGGTATGG+TGG | 0.460246 | 2_3:+45765440 | Msa0294150:CDS |
| GTGAACAGCGTTGCCGATGC+TGG | 0.462299 | 2_3:-45765492 | None:intergenic |
| GGCGCCGCCATATCTGAGTA+TGG | 0.471750 | 2_3:-45765419 | None:intergenic |
| ATAGCAGCTGTTAGGAAGAC+TGG | 0.482187 | 2_3:-45765549 | None:intergenic |
| TGGCGGCGCCACGTGTCGGC+TGG | 0.485744 | 2_3:+45765432 | Msa0294150:CDS |
| AAGACTGGTAGAGTGATGTT+TGG | 0.498893 | 2_3:-45765534 | None:intergenic |
| ACACACTCAGCTGAAATTGA+AGG | 0.502802 | 2_3:-45764681 | None:intergenic |
| CACGTGTCGGCTGGTATGGT+GGG | 0.507722 | 2_3:+45765441 | Msa0294150:CDS |
| TTCACGTTTAAGAGAGGTGA+AGG | 0.516785 | 2_3:+45764426 | None:intergenic |
| GATATGGCGGCGCCACGTGT+CGG | 0.519968 | 2_3:+45765428 | Msa0294150:CDS |
| AGATCATACAAGGAGTGTGC+TGG | 0.532397 | 2_3:+45764648 | Msa0294150:CDS |
| GAGACACTTAACTAATTCCA+TGG | 0.532404 | 2_3:-45764486 | None:intergenic |
| TGCTGGATGGCGGACCATGA+AGG | 0.562491 | 2_3:-45765475 | None:intergenic |
| CATGGTCCGCCATCCAGCAT+CGG | 0.577355 | 2_3:+45765479 | Msa0294150:CDS |
| TATAAATAATCACAGCGCCA+CGG | 0.598650 | 2_3:+45765394 | Msa0294150:intron |
| GTCTTGCAAAGGATTAGCCA+TGG | 0.600408 | 2_3:+45764469 | Msa0294150:CDS |
| GGTTGATAATAGATCATACA+AGG | 0.601750 | 2_3:+45764638 | Msa0294150:intron |
| ATCGGCAACGCTGTTCACTA+CGG | 0.602867 | 2_3:+45765497 | Msa0294150:CDS |
| ACAGCGTTGCCGATGCTGGA+TGG | 0.603561 | 2_3:-45765488 | None:intergenic |
| CCACCATACCAGCCGACACG+TGG | 0.605801 | 2_3:-45765440 | None:intergenic |
| ACAATGTCCAAGTCTTGCAA+AGG | 0.613550 | 2_3:+45764458 | Msa0294150:exon |
| CTGCTATCAGAGCTTCACAT+GGG | 0.619000 | 2_3:+45765565 | Msa0294150:CDS |
| CATATCTGAGTATGGTGCCG+TGG | 0.620009 | 2_3:-45765411 | None:intergenic |
| GCGTTGCCGATGCTGGATGG+CGG | 0.651113 | 2_3:-45765485 | None:intergenic |
| TGCTATCAGAGCTTCACATG+GGG | 0.653202 | 2_3:+45765566 | Msa0294150:CDS |
| GCTGCTATCAGAGCTTCACA+TGG | 0.653494 | 2_3:+45765564 | Msa0294150:CDS |
| GGCACCATACTCAGATATGG+CGG | 0.695231 | 2_3:+45765415 | Msa0294150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGTTTATGTTTATGAAT+AGG | + | chr2_3:45764617-45764636 | Msa0294150:intron | 15.0% |
| !! | TTATGTTTATGTTTATGAAT+AGG | + | chr2_3:45764617-45764636 | Msa0294150:intron | 15.0% |
| !!! | TTGATTTTTGTGATGTTAAT+TGG | + | chr2_3:45764593-45764612 | Msa0294150:intron | 20.0% |
| !!! | TGATTTTTGTGATGTTAATT+GGG | + | chr2_3:45764594-45764613 | Msa0294150:intron | 20.0% |
| !! | TTCATTACTTATACAATAGT+TGG | - | chr2_3:45765284-45765303 | None:intergenic | 20.0% |
| !! | ATTATTTATAAAACTGGTCA+TGG | - | chr2_3:45765384-45765403 | None:intergenic | 20.0% |
| !!! | TTGATTTTTGTGATGTTAAT+TGG | + | chr2_3:45764593-45764612 | Msa0294150:intron | 20.0% |
| !!! | TGATTTTTGTGATGTTAATT+GGG | + | chr2_3:45764594-45764613 | Msa0294150:intron | 20.0% |
| !! | TTCATTACTTATACAATAGT+TGG | - | chr2_3:45765284-45765303 | None:intergenic | 20.0% |
| !! | ATTATTTATAAAACTGGTCA+TGG | - | chr2_3:45765384-45765403 | None:intergenic | 20.0% |
| ! | GCTGTGATTATTTATAAAAC+TGG | - | chr2_3:45765390-45765409 | None:intergenic | 25.0% |
| ! | GCTGTGATTATTTATAAAAC+TGG | - | chr2_3:45765390-45765409 | None:intergenic | 25.0% |
| !! | GGTTGATAATAGATCATACA+AGG | + | chr2_3:45764638-45764657 | Msa0294150:intron | 30.0% |
| ACCTATTTCAATTGCAAAAG+AGG | + | chr2_3:45764717-45764736 | Msa0294150:intron | 30.0% | |
| ! | TCCTCTTTTGCAATTGAAAT+AGG | - | chr2_3:45764721-45764740 | None:intergenic | 30.0% |
| GATAGAGAGGAAAATTTCTT+CGG | + | chr2_3:45765087-45765106 | Msa0294150:intron | 30.0% | |
| ! | TCATGTTGATTGAGAAAAGA+TGG | + | chr2_3:45765112-45765131 | Msa0294150:intron | 30.0% |
| ATACCAGTATTGTCAAGTAT+TGG | + | chr2_3:45765309-45765328 | Msa0294150:intron | 30.0% | |
| !! | GGTTGATAATAGATCATACA+AGG | + | chr2_3:45764638-45764657 | Msa0294150:intron | 30.0% |
| ACCTATTTCAATTGCAAAAG+AGG | + | chr2_3:45764717-45764736 | Msa0294150:intron | 30.0% | |
| ! | TCCTCTTTTGCAATTGAAAT+AGG | - | chr2_3:45764721-45764740 | None:intergenic | 30.0% |
| GATAGAGAGGAAAATTTCTT+CGG | + | chr2_3:45765087-45765106 | Msa0294150:intron | 30.0% | |
| ! | TCATGTTGATTGAGAAAAGA+TGG | + | chr2_3:45765112-45765131 | Msa0294150:intron | 30.0% |
| ATACCAGTATTGTCAAGTAT+TGG | + | chr2_3:45765309-45765328 | Msa0294150:intron | 30.0% | |
| GAGACACTTAACTAATTCCA+TGG | - | chr2_3:45764489-45764508 | None:intergenic | 35.0% | |
| CAGTGAATCTGATTGTGTTA+AGG | + | chr2_3:45764508-45764527 | Msa0294150:CDS | 35.0% | |
| TTTCAATTGCAAAAGAGGAC+AGG | + | chr2_3:45764722-45764741 | Msa0294150:intron | 35.0% | |
| CTGAAATGCAACAACTAACA+AGG | - | chr2_3:45764755-45764774 | None:intergenic | 35.0% | |
| ! | GTTAGGTTGTTAGTTTGAGT+AGG | + | chr2_3:45764983-45765002 | Msa0294150:intron | 35.0% |
| ! | GTTGTTAGTTTGAGTAGGTT+AGG | + | chr2_3:45764988-45765007 | Msa0294150:intron | 35.0% |
| TTGAAGCTGTTAAGAAACAC+AGG | + | chr2_3:45765030-45765049 | Msa0294150:intron | 35.0% | |
| TATAAATAATCACAGCGCCA+CGG | + | chr2_3:45765394-45765413 | Msa0294150:intron | 35.0% | |
| GAGACACTTAACTAATTCCA+TGG | - | chr2_3:45764489-45764508 | None:intergenic | 35.0% | |
| CAGTGAATCTGATTGTGTTA+AGG | + | chr2_3:45764508-45764527 | Msa0294150:CDS | 35.0% | |
| TTTCAATTGCAAAAGAGGAC+AGG | + | chr2_3:45764722-45764741 | Msa0294150:intron | 35.0% | |
| CTGAAATGCAACAACTAACA+AGG | - | chr2_3:45764755-45764774 | None:intergenic | 35.0% | |
| ! | GTTAGGTTGTTAGTTTGAGT+AGG | + | chr2_3:45764983-45765002 | Msa0294150:intron | 35.0% |
| ! | GTTGTTAGTTTGAGTAGGTT+AGG | + | chr2_3:45764988-45765007 | Msa0294150:intron | 35.0% |
| TTGAAGCTGTTAAGAAACAC+AGG | + | chr2_3:45765030-45765049 | Msa0294150:intron | 35.0% | |
| TATAAATAATCACAGCGCCA+CGG | + | chr2_3:45765394-45765413 | Msa0294150:intron | 35.0% | |
| ACAATGTCCAAGTCTTGCAA+AGG | + | chr2_3:45764458-45764477 | Msa0294150:exon | 40.0% | |
| ACACACTCAGCTGAAATTGA+AGG | - | chr2_3:45764684-45764703 | None:intergenic | 40.0% | |
| TCAATTTCAGCTGAGTGTGT+TGG | + | chr2_3:45764684-45764703 | Msa0294150:intron | 40.0% | |
| ATATGTGTCAGTATCGTGTC+TGG | - | chr2_3:45764816-45764835 | None:intergenic | 40.0% | |
| GTAATCAGATGTGTCTGTGT+TGG | + | chr2_3:45764877-45764896 | Msa0294150:intron | 40.0% | |
| !! | CAGAAGTGTTGGTGATAGAT+AGG | + | chr2_3:45764937-45764956 | Msa0294150:intron | 40.0% |
| TAGGCTGTTAACCTCTTAAG+TGG | + | chr2_3:45764956-45764975 | Msa0294150:intron | 40.0% | |
| AGGCTGTTAACCTCTTAAGT+GGG | + | chr2_3:45764957-45764976 | Msa0294150:intron | 40.0% | |
| !! | ACCTCTTAAGTGGGTTAGTT+AGG | + | chr2_3:45764966-45764985 | Msa0294150:intron | 40.0% |
| ACCTAACTAACCCACTTAAG+AGG | - | chr2_3:45764970-45764989 | None:intergenic | 40.0% | |
| TGGCCAATACTTGACAATAC+TGG | - | chr2_3:45765315-45765334 | None:intergenic | 40.0% | |
| !! | TTGTCAAGTATTGGCCATGT+TGG | + | chr2_3:45765318-45765337 | Msa0294150:intron | 40.0% |
| !! | GATATCGATGGGGTTGTTTT+TGG | + | chr2_3:45765351-45765370 | Msa0294150:intron | 40.0% |
| AAGACTGGTAGAGTGATGTT+TGG | - | chr2_3:45765537-45765556 | None:intergenic | 40.0% | |
| ACAATGTCCAAGTCTTGCAA+AGG | + | chr2_3:45764458-45764477 | Msa0294150:exon | 40.0% | |
| ACACACTCAGCTGAAATTGA+AGG | - | chr2_3:45764684-45764703 | None:intergenic | 40.0% | |
| TCAATTTCAGCTGAGTGTGT+TGG | + | chr2_3:45764684-45764703 | Msa0294150:intron | 40.0% | |
| ATATGTGTCAGTATCGTGTC+TGG | - | chr2_3:45764816-45764835 | None:intergenic | 40.0% | |
| GTAATCAGATGTGTCTGTGT+TGG | + | chr2_3:45764877-45764896 | Msa0294150:intron | 40.0% | |
| !! | CAGAAGTGTTGGTGATAGAT+AGG | + | chr2_3:45764937-45764956 | Msa0294150:intron | 40.0% |
| TAGGCTGTTAACCTCTTAAG+TGG | + | chr2_3:45764956-45764975 | Msa0294150:intron | 40.0% | |
| AGGCTGTTAACCTCTTAAGT+GGG | + | chr2_3:45764957-45764976 | Msa0294150:intron | 40.0% | |
| !! | ACCTCTTAAGTGGGTTAGTT+AGG | + | chr2_3:45764966-45764985 | Msa0294150:intron | 40.0% |
| ACCTAACTAACCCACTTAAG+AGG | - | chr2_3:45764970-45764989 | None:intergenic | 40.0% | |
| TGGCCAATACTTGACAATAC+TGG | - | chr2_3:45765315-45765334 | None:intergenic | 40.0% | |
| !! | TTGTCAAGTATTGGCCATGT+TGG | + | chr2_3:45765318-45765337 | Msa0294150:intron | 40.0% |
| !! | GATATCGATGGGGTTGTTTT+TGG | + | chr2_3:45765351-45765370 | Msa0294150:intron | 40.0% |
| AAGACTGGTAGAGTGATGTT+TGG | - | chr2_3:45765537-45765556 | None:intergenic | 40.0% | |
| GGCTAATCCTTTGCAAGACT+TGG | - | chr2_3:45764468-45764487 | None:intergenic | 45.0% | |
| !! | GTCTTGCAAAGGATTAGCCA+TGG | + | chr2_3:45764469-45764488 | Msa0294150:CDS | 45.0% |
| ! | AGATCATACAAGGAGTGTGC+TGG | + | chr2_3:45764648-45764667 | Msa0294150:CDS | 45.0% |
| AGCTGAGTGTGTTGGACTTA+GGG | + | chr2_3:45764692-45764711 | Msa0294150:intron | 45.0% | |
| TCAGATGTGTCTGTGTTGGA+TGG | + | chr2_3:45764881-45764900 | Msa0294150:intron | 45.0% | |
| ! | ATGCCTTCGATCAGAAGTGT+TGG | + | chr2_3:45764926-45764945 | Msa0294150:intron | 45.0% |
| TCACCAACACTTCTGATCGA+AGG | - | chr2_3:45764932-45764951 | None:intergenic | 45.0% | |
| AGCTTGAGAGCTTGATAGAG+AGG | + | chr2_3:45765074-45765093 | Msa0294150:intron | 45.0% | |
| ATAGCAGCTGTTAGGAAGAC+TGG | - | chr2_3:45765552-45765571 | None:intergenic | 45.0% | |
| ! | AAGCTCTGATAGCAGCTGTT+AGG | - | chr2_3:45765560-45765579 | None:intergenic | 45.0% |
| CTGCTATCAGAGCTTCACAT+GGG | + | chr2_3:45765565-45765584 | Msa0294150:CDS | 45.0% | |
| TGCTATCAGAGCTTCACATG+GGG | + | chr2_3:45765566-45765585 | Msa0294150:CDS | 45.0% | |
| GGCTAATCCTTTGCAAGACT+TGG | - | chr2_3:45764468-45764487 | None:intergenic | 45.0% | |
| !! | GTCTTGCAAAGGATTAGCCA+TGG | + | chr2_3:45764469-45764488 | Msa0294150:CDS | 45.0% |
| ! | AGATCATACAAGGAGTGTGC+TGG | + | chr2_3:45764648-45764667 | Msa0294150:CDS | 45.0% |
| AGCTGAGTGTGTTGGACTTA+GGG | + | chr2_3:45764692-45764711 | Msa0294150:intron | 45.0% | |
| TCAGATGTGTCTGTGTTGGA+TGG | + | chr2_3:45764881-45764900 | Msa0294150:intron | 45.0% | |
| ! | ATGCCTTCGATCAGAAGTGT+TGG | + | chr2_3:45764926-45764945 | Msa0294150:intron | 45.0% |
| TCACCAACACTTCTGATCGA+AGG | - | chr2_3:45764932-45764951 | None:intergenic | 45.0% | |
| AGCTTGAGAGCTTGATAGAG+AGG | + | chr2_3:45765074-45765093 | Msa0294150:intron | 45.0% | |
| ATAGCAGCTGTTAGGAAGAC+TGG | - | chr2_3:45765552-45765571 | None:intergenic | 45.0% | |
| ! | AAGCTCTGATAGCAGCTGTT+AGG | - | chr2_3:45765560-45765579 | None:intergenic | 45.0% |
| CTGCTATCAGAGCTTCACAT+GGG | + | chr2_3:45765565-45765584 | Msa0294150:CDS | 45.0% | |
| TGCTATCAGAGCTTCACATG+GGG | + | chr2_3:45765566-45765585 | Msa0294150:CDS | 45.0% | |
| CAGCTGAGTGTGTTGGACTT+AGG | + | chr2_3:45764691-45764710 | Msa0294150:intron | 50.0% | |
| GTCAGTATCGTGTCTGGTGT+CGG | - | chr2_3:45764810-45764829 | None:intergenic | 50.0% | |
| TGTTGGATGGTGACACGTGT+CGG | + | chr2_3:45764894-45764913 | Msa0294150:intron | 50.0% | |
| ! | CTTCTGATCGAAGGCATGCT+CGG | - | chr2_3:45764923-45764942 | None:intergenic | 50.0% |
| AACCCCATCGATATCCTCCA+TGG | - | chr2_3:45765346-45765365 | None:intergenic | 50.0% | |
| ! | CATATCTGAGTATGGTGCCG+TGG | - | chr2_3:45765414-45765433 | None:intergenic | 50.0% |
| CACGGCACCATACTCAGATA+TGG | + | chr2_3:45765412-45765431 | Msa0294150:CDS | 50.0% | |
| GGCACCATACTCAGATATGG+CGG | + | chr2_3:45765415-45765434 | Msa0294150:CDS | 50.0% | |
| !!! | GGGCTTTTAGCTCTCCTTCA+TGG | + | chr2_3:45765461-45765480 | Msa0294150:CDS | 50.0% |
| ATCGGCAACGCTGTTCACTA+CGG | + | chr2_3:45765497-45765516 | Msa0294150:CDS | 50.0% | |
| GCTGCTATCAGAGCTTCACA+TGG | + | chr2_3:45765564-45765583 | Msa0294150:CDS | 50.0% | |
| CAGCTGAGTGTGTTGGACTT+AGG | + | chr2_3:45764691-45764710 | Msa0294150:intron | 50.0% | |
| GTCAGTATCGTGTCTGGTGT+CGG | - | chr2_3:45764810-45764829 | None:intergenic | 50.0% | |
| TGTTGGATGGTGACACGTGT+CGG | + | chr2_3:45764894-45764913 | Msa0294150:intron | 50.0% | |
| ! | CTTCTGATCGAAGGCATGCT+CGG | - | chr2_3:45764923-45764942 | None:intergenic | 50.0% |
| AACCCCATCGATATCCTCCA+TGG | - | chr2_3:45765346-45765365 | None:intergenic | 50.0% | |
| ! | CATATCTGAGTATGGTGCCG+TGG | - | chr2_3:45765414-45765433 | None:intergenic | 50.0% |
| CACGGCACCATACTCAGATA+TGG | + | chr2_3:45765412-45765431 | Msa0294150:CDS | 50.0% | |
| GGCACCATACTCAGATATGG+CGG | + | chr2_3:45765415-45765434 | Msa0294150:CDS | 50.0% | |
| !!! | GGGCTTTTAGCTCTCCTTCA+TGG | + | chr2_3:45765461-45765480 | Msa0294150:CDS | 50.0% |
| ATCGGCAACGCTGTTCACTA+CGG | + | chr2_3:45765497-45765516 | Msa0294150:CDS | 50.0% | |
| GCTGCTATCAGAGCTTCACA+TGG | + | chr2_3:45765564-45765583 | Msa0294150:CDS | 50.0% | |
| TATTGGCCATGTTGGCGCCA+TGG | + | chr2_3:45765326-45765345 | Msa0294150:intron | 55.0% | |
| TATCCTCCATGGCGCCAACA+TGG | - | chr2_3:45765335-45765354 | None:intergenic | 55.0% | |
| GCGCCATGGAGGATATCGAT+GGG | + | chr2_3:45765340-45765359 | Msa0294150:intron | 55.0% | |
| CGCCATGGAGGATATCGATG+GGG | + | chr2_3:45765341-45765360 | Msa0294150:intron | 55.0% | |
| TATTGGCCATGTTGGCGCCA+TGG | + | chr2_3:45765326-45765345 | Msa0294150:intron | 55.0% | |
| TATCCTCCATGGCGCCAACA+TGG | - | chr2_3:45765335-45765354 | None:intergenic | 55.0% | |
| GCGCCATGGAGGATATCGAT+GGG | + | chr2_3:45765340-45765359 | Msa0294150:intron | 55.0% | |
| CGCCATGGAGGATATCGATG+GGG | + | chr2_3:45765341-45765360 | Msa0294150:intron | 55.0% | |
| GGCGCCATGGAGGATATCGA+TGG | + | chr2_3:45765339-45765358 | Msa0294150:intron | 60.0% | |
| GGCGCCGCCATATCTGAGTA+TGG | - | chr2_3:45765422-45765441 | None:intergenic | 60.0% | |
| !! | CACGTGTCGGCTGGTATGGT+GGG | + | chr2_3:45765441-45765460 | Msa0294150:CDS | 60.0% |
| !! | TGCTGGATGGCGGACCATGA+AGG | - | chr2_3:45765478-45765497 | None:intergenic | 60.0% |
| CATGGTCCGCCATCCAGCAT+CGG | + | chr2_3:45765479-45765498 | Msa0294150:CDS | 60.0% | |
| ACAGCGTTGCCGATGCTGGA+TGG | - | chr2_3:45765491-45765510 | None:intergenic | 60.0% | |
| GTGAACAGCGTTGCCGATGC+TGG | - | chr2_3:45765495-45765514 | None:intergenic | 60.0% | |
| GGCGCCATGGAGGATATCGA+TGG | + | chr2_3:45765339-45765358 | Msa0294150:intron | 60.0% | |
| GGCGCCGCCATATCTGAGTA+TGG | - | chr2_3:45765422-45765441 | None:intergenic | 60.0% | |
| !! | CACGTGTCGGCTGGTATGGT+GGG | + | chr2_3:45765441-45765460 | Msa0294150:CDS | 60.0% |
| !! | TGCTGGATGGCGGACCATGA+AGG | - | chr2_3:45765478-45765497 | None:intergenic | 60.0% |
| CATGGTCCGCCATCCAGCAT+CGG | + | chr2_3:45765479-45765498 | Msa0294150:CDS | 60.0% | |
| ACAGCGTTGCCGATGCTGGA+TGG | - | chr2_3:45765491-45765510 | None:intergenic | 60.0% | |
| GTGAACAGCGTTGCCGATGC+TGG | - | chr2_3:45765495-45765514 | None:intergenic | 60.0% | |
| TGGCCATGTTGGCGCCATGG+AGG | + | chr2_3:45765329-45765348 | Msa0294150:intron | 65.0% | |
| GATATGGCGGCGCCACGTGT+CGG | + | chr2_3:45765428-45765447 | Msa0294150:CDS | 65.0% | |
| CCACCATACCAGCCGACACG+TGG | - | chr2_3:45765443-45765462 | None:intergenic | 65.0% | |
| !! | CCACGTGTCGGCTGGTATGG+TGG | + | chr2_3:45765440-45765459 | Msa0294150:CDS | 65.0% |
| GCGTTGCCGATGCTGGATGG+CGG | - | chr2_3:45765488-45765507 | None:intergenic | 65.0% | |
| TGGCCATGTTGGCGCCATGG+AGG | + | chr2_3:45765329-45765348 | Msa0294150:intron | 65.0% | |
| GATATGGCGGCGCCACGTGT+CGG | + | chr2_3:45765428-45765447 | Msa0294150:CDS | 65.0% | |
| CCACCATACCAGCCGACACG+TGG | - | chr2_3:45765443-45765462 | None:intergenic | 65.0% | |
| !! | CCACGTGTCGGCTGGTATGG+TGG | + | chr2_3:45765440-45765459 | Msa0294150:CDS | 65.0% |
| GCGTTGCCGATGCTGGATGG+CGG | - | chr2_3:45765488-45765507 | None:intergenic | 65.0% | |
| !! | GCGCCACGTGTCGGCTGGTA+TGG | + | chr2_3:45765437-45765456 | Msa0294150:CDS | 70.0% |
| !! | GCGCCACGTGTCGGCTGGTA+TGG | + | chr2_3:45765437-45765456 | Msa0294150:CDS | 70.0% |
| !! | TGGCGGCGCCACGTGTCGGC+TGG | + | chr2_3:45765432-45765451 | Msa0294150:CDS | 80.0% |
| !! | TGGCGGCGCCACGTGTCGGC+TGG | + | chr2_3:45765432-45765451 | Msa0294150:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 45764432 | 45765610 | 45764432 | ID=Msa0294150;Name=Msa0294150 |
| chr2_3 | mRNA | 45764432 | 45765610 | 45764432 | ID=Msa0294150-mRNA-1;Parent=Msa0294150;Name=Msa0294150-mRNA-1;_AED=0.50;_eAED=0.50;_QI=29|0.5|0.33|0.66|0.5|0.33|3|0|110 |
| chr2_3 | exon | 45764432 | 45764529 | 45764432 | ID=Msa0294150-mRNA-1:exon:14315;Parent=Msa0294150-mRNA-1 |
| chr2_3 | exon | 45764639 | 45764697 | 45764639 | ID=Msa0294150-mRNA-1:exon:14316;Parent=Msa0294150-mRNA-1 |
| chr2_3 | exon | 45765409 | 45765610 | 45765409 | ID=Msa0294150-mRNA-1:exon:14317;Parent=Msa0294150-mRNA-1 |
| chr2_3 | five_prime_UTR | 45764432 | 45764460 | 45764432 | ID=Msa0294150-mRNA-1:five_prime_utr;Parent=Msa0294150-mRNA-1 |
| chr2_3 | CDS | 45764461 | 45764529 | 45764461 | ID=Msa0294150-mRNA-1:cds;Parent=Msa0294150-mRNA-1 |
| chr2_3 | CDS | 45764639 | 45764697 | 45764639 | ID=Msa0294150-mRNA-1:cds;Parent=Msa0294150-mRNA-1 |
| chr2_3 | CDS | 45765409 | 45765610 | 45765409 | ID=Msa0294150-mRNA-1:cds;Parent=Msa0294150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
