Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170410 | XP_003591816.1 | 96.629 | 178 | 6 | 0 | 1 | 178 | 1 | 178 | 1.09e-122 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170410 | sp|P32294|AX22B_VIGRR | 70.833 | 192 | 42 | 3 | 1 | 178 | 1 | 192 | 4.03e-95 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170410 | G7I486 | 96.629 | 178 | 6 | 0 | 1 | 178 | 1 | 178 | 5.20e-123 | 353 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0170410 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011930 | Msa0170410 | 0.801761 | 7.730587e-49 | -8.615850e-47 |
| Msa0030280 | Msa0170410 | 0.875546 | 2.830173e-68 | -8.615850e-47 |
| Msa0031820 | Msa0170410 | 0.808549 | 2.932516e-50 | -8.615850e-47 |
| Msa0039250 | Msa0170410 | 0.809438 | 1.891844e-50 | -8.615850e-47 |
| Msa0047280 | Msa0170410 | 0.806212 | 9.177259e-50 | -8.615850e-47 |
| Msa0052610 | Msa0170410 | 0.812794 | 3.544468e-51 | -8.615850e-47 |
| Msa0061340 | Msa0170410 | 0.802802 | 4.719218e-49 | -8.615850e-47 |
| Msa0077880 | Msa0170410 | 0.888489 | 5.640323e-73 | -8.615850e-47 |
| Msa0097850 | Msa0170410 | 0.820364 | 7.131168e-53 | -8.615850e-47 |
| Msa0109050 | Msa0170410 | 0.819857 | 9.318174e-53 | -8.615850e-47 |
| Msa0125770 | Msa0170410 | 0.854485 | 1.192990e-61 | -8.615850e-47 |
| Msa0126770 | Msa0170410 | 0.813588 | 2.372040e-51 | -8.615850e-47 |
| Msa0133720 | Msa0170410 | 0.813416 | 2.588485e-51 | -8.615850e-47 |
| Msa0133820 | Msa0170410 | 0.811622 | 6.384019e-51 | -8.615850e-47 |
| Msa0139990 | Msa0170410 | 0.817579 | 3.065335e-52 | -8.615850e-47 |
| Msa0170410 | Msa0171850 | 0.816043 | 6.776990e-52 | -8.615850e-47 |
| Msa0170410 | Msa0181230 | 0.804846 | 1.775721e-49 | -8.615850e-47 |
| Msa0170410 | Msa0197520 | 0.807494 | 4.918438e-50 | -8.615850e-47 |
| Msa0170410 | Msa0207350 | 0.804873 | 1.752318e-49 | -8.615850e-47 |
| Msa0170410 | Msa0226460 | 0.802785 | 4.756659e-49 | -8.615850e-47 |
| Msa0170410 | Msa0230150 | 0.811387 | 7.182640e-51 | -8.615850e-47 |
| Msa0170410 | Msa0335800 | 0.810160 | 1.323605e-50 | -8.615850e-47 |
| Msa0170410 | Msa0357990 | 0.803745 | 3.010809e-49 | -8.615850e-47 |
| Msa0170410 | Msa0360990 | 0.804074 | 2.571526e-49 | -8.615850e-47 |
| Msa0170410 | Msa0386920 | 0.804427 | 2.171787e-49 | -8.615850e-47 |
| Msa0170410 | Msa0479200 | 0.801054 | 1.079029e-48 | -8.615850e-47 |
| Msa0170410 | Msa0511310 | 0.800171 | 1.633358e-48 | -8.615850e-47 |
| Msa0170410 | Msa0556010 | 0.802475 | 5.513438e-49 | -8.615850e-47 |
| Msa0170410 | Msa0578090 | 0.803586 | 3.248562e-49 | -8.615850e-47 |
| Msa0170410 | Msa0583500 | 0.800035 | 1.740706e-48 | -8.615850e-47 |
| Msa0170410 | Msa0619510 | 0.800605 | 1.332694e-48 | -8.615850e-47 |
| Msa0170410 | Msa0659600 | 0.807248 | 5.544996e-50 | -8.615850e-47 |
| Msa0170410 | Msa0733480 | 0.802509 | 5.424548e-49 | -8.615850e-47 |
| Msa0170410 | Msa0748920 | 0.803967 | 2.707534e-49 | -8.615850e-47 |
| Msa0170410 | Msa0750920 | 0.811040 | 8.539244e-51 | -8.615850e-47 |
| Msa0170410 | Msa0751010 | 0.814077 | 1.851190e-51 | -8.615850e-47 |
| Msa0170410 | Msa0794050 | 0.815549 | 8.732123e-52 | -8.615850e-47 |
| Msa0170410 | Msa0800270 | 0.823143 | 1.623540e-53 | -8.615850e-47 |
| Msa0170410 | Msa0818770 | 0.804947 | 1.691367e-49 | -8.615850e-47 |
| Msa0170410 | Msa0838260 | 0.835489 | 1.629350e-56 | -8.615850e-47 |
| Msa0170410 | Msa0848530 | 0.810280 | 1.246498e-50 | -8.615850e-47 |
| Msa0170410 | Msa0888940 | 0.801351 | 9.380331e-49 | -8.615850e-47 |
| Msa0170410 | Msa0897400 | 0.801253 | 9.824930e-49 | -8.615850e-47 |
| Msa0170410 | Msa0901110 | 0.802008 | 6.877170e-49 | -8.615850e-47 |
| Msa0170410 | Msa0944200 | 0.800350 | 1.502008e-48 | -8.615850e-47 |
| Msa0170410 | Msa1022970 | 0.809302 | 2.023393e-50 | -8.615850e-47 |
| Msa0170410 | Msa1033660 | 0.820629 | 6.201582e-53 | -8.615850e-47 |
| Msa0170410 | Msa1073490 | 0.804834 | 1.785925e-49 | -8.615850e-47 |
| Msa0170410 | Msa1079230 | 0.807882 | 4.068478e-50 | -8.615850e-47 |
| Msa0170410 | Msa1093330 | 0.805113 | 1.561189e-49 | -8.615850e-47 |
| Msa0170410 | Msa1131560 | 0.817738 | 2.821707e-52 | -8.615850e-47 |
| Msa0170410 | Msa1132310 | 0.810173 | 1.315108e-50 | -8.615850e-47 |
| Msa0170410 | Msa1163540 | 0.806747 | 7.077629e-50 | -8.615850e-47 |
| Msa0170410 | Msa1166870 | 0.801163 | 1.024890e-48 | -8.615850e-47 |
| Msa0170410 | Msa1208890 | -0.805560 | 1.258295e-49 | -8.615850e-47 |
| Msa0170410 | Msa1216260 | 0.800771 | 1.232641e-48 | -8.615850e-47 |
| Msa0170410 | Msa1252850 | -0.801961 | 7.033514e-49 | -8.615850e-47 |
| Msa0170410 | Msa1311960 | 0.807158 | 5.794572e-50 | -8.615850e-47 |
| Msa0170410 | Msa1323050 | 0.808269 | 3.365488e-50 | -8.615850e-47 |
| Msa0170410 | Msa1333560 | 0.801532 | 8.615109e-49 | -8.615850e-47 |
| Msa0170410 | Msa1360180 | 0.806255 | 8.990119e-50 | -8.615850e-47 |
| Msa0170410 | Msa1380970 | 0.804083 | 2.560975e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170410 | MtrunA17_Chr1g0187961 | 96.629 | 178 | 6 | 0 | 1 | 178 | 1 | 178 | 1.00e-126 | 353 |
| Msa0170410 | MtrunA17_Chr1g0166011 | 72.527 | 182 | 36 | 3 | 11 | 178 | 1 | 182 | 2.24e-91 | 264 |
| Msa0170410 | MtrunA17_Chr1g0184801 | 59.701 | 201 | 58 | 5 | 1 | 178 | 1 | 201 | 2.06e-79 | 234 |
| Msa0170410 | MtrunA17_Chr7g0260621 | 56.545 | 191 | 60 | 4 | 11 | 178 | 11 | 201 | 6.57e-72 | 216 |
| Msa0170410 | MtrunA17_Chr6g0486121 | 42.174 | 230 | 73 | 5 | 9 | 178 | 13 | 242 | 2.12e-51 | 165 |
| Msa0170410 | MtrunA17_Chr1g0187921 | 45.161 | 217 | 70 | 6 | 11 | 178 | 8 | 224 | 1.81e-50 | 162 |
| Msa0170410 | MtrunA17_Chr1g0190711 | 41.410 | 227 | 74 | 5 | 11 | 178 | 15 | 241 | 2.74e-49 | 159 |
| Msa0170410 | MtrunA17_Chr7g0260641 | 52.980 | 151 | 45 | 4 | 53 | 178 | 89 | 238 | 2.60e-47 | 154 |
| Msa0170410 | MtrunA17_Chr5g0411501 | 44.751 | 181 | 69 | 4 | 29 | 178 | 143 | 323 | 5.62e-46 | 153 |
| Msa0170410 | MtrunA17_Chr1g0184791 | 40.991 | 222 | 66 | 6 | 16 | 178 | 18 | 233 | 1.37e-45 | 150 |
| Msa0170410 | MtrunA17_Chr8g0366881 | 51.678 | 149 | 46 | 3 | 56 | 178 | 188 | 336 | 3.78e-45 | 152 |
| Msa0170410 | MtrunA17_Chr2g0331411 | 53.020 | 149 | 43 | 4 | 57 | 178 | 166 | 314 | 4.47e-45 | 151 |
| Msa0170410 | MtrunA17_Chr5g0428141 | 49.045 | 157 | 54 | 4 | 47 | 178 | 180 | 335 | 8.23e-45 | 150 |
| Msa0170410 | MtrunA17_Chr8g0390281 | 47.802 | 182 | 66 | 6 | 26 | 178 | 100 | 281 | 3.14e-43 | 145 |
| Msa0170410 | MtrunA17_Chr4g0004181 | 47.337 | 169 | 80 | 4 | 11 | 178 | 6 | 166 | 2.98e-41 | 137 |
| Msa0170410 | MtrunA17_Chr2g0332141 | 57.292 | 96 | 32 | 3 | 87 | 173 | 8 | 103 | 4.07e-30 | 106 |
| Msa0170410 | MtrunA17_Chr1g0183251 | 33.333 | 177 | 57 | 4 | 62 | 178 | 81 | 256 | 4.72e-26 | 100 |
| Msa0170410 | MtrunA17_Chr8g0340731 | 37.037 | 162 | 56 | 5 | 55 | 174 | 103 | 260 | 1.59e-25 | 99.0 |
| Msa0170410 | MtrunA17_Chr4g0069561 | 38.583 | 127 | 75 | 2 | 48 | 173 | 58 | 182 | 4.25e-25 | 95.9 |
| Msa0170410 | MtrunA17_Chr2g0330951 | 32.759 | 174 | 68 | 4 | 48 | 174 | 83 | 254 | 2.94e-24 | 95.5 |
| Msa0170410 | MtrunA17_Chr1g0193861 | 43.820 | 89 | 49 | 1 | 84 | 171 | 82 | 170 | 1.20e-19 | 81.3 |
| Msa0170410 | MtrunA17_Chr7g0270851 | 40.426 | 94 | 55 | 1 | 79 | 171 | 62 | 155 | 8.06e-19 | 79.0 |
| Msa0170410 | MtrunA17_Chr3g0137601 | 31.538 | 130 | 69 | 3 | 64 | 178 | 89 | 213 | 1.65e-18 | 79.3 |
| Msa0170410 | MtrunA17_Chr4g0064131 | 30.579 | 121 | 63 | 3 | 64 | 171 | 93 | 205 | 3.25e-16 | 73.2 |
| Msa0170410 | MtrunA17_Chr1g0209181 | 37.607 | 117 | 62 | 4 | 64 | 171 | 54 | 168 | 2.90e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170410 | AT5G43700.1 | 62.842 | 183 | 61 | 3 | 1 | 178 | 1 | 181 | 1.50e-76 | 227 |
| Msa0170410 | AT1G04240.1 | 61.326 | 181 | 57 | 4 | 11 | 178 | 5 | 185 | 1.67e-76 | 227 |
| Msa0170410 | AT1G04240.2 | 61.326 | 181 | 57 | 4 | 11 | 178 | 105 | 285 | 9.84e-76 | 228 |
| Msa0170410 | AT3G23030.1 | 60.452 | 177 | 52 | 4 | 5 | 174 | 1 | 166 | 3.33e-68 | 205 |
| Msa0170410 | AT3G23030.2 | 60.112 | 178 | 53 | 4 | 4 | 174 | 87 | 253 | 9.91e-68 | 207 |
| Msa0170410 | AT4G14560.1 | 61.677 | 167 | 57 | 3 | 9 | 175 | 5 | 164 | 1.12e-64 | 196 |
| Msa0170410 | AT3G04730.1 | 45.089 | 224 | 66 | 6 | 11 | 178 | 2 | 224 | 1.06e-53 | 171 |
| Msa0170410 | AT4G14550.2 | 45.370 | 216 | 70 | 6 | 11 | 178 | 1 | 216 | 2.28e-52 | 167 |
| Msa0170410 | AT4G14550.1 | 45.370 | 216 | 70 | 6 | 11 | 178 | 1 | 216 | 3.06e-52 | 167 |
| Msa0170410 | AT1G04250.1 | 43.256 | 215 | 73 | 5 | 10 | 178 | 6 | 217 | 3.71e-50 | 161 |
| Msa0170410 | AT3G23050.1 | 44.000 | 225 | 69 | 7 | 11 | 178 | 6 | 230 | 3.96e-50 | 162 |
| Msa0170410 | AT4G29080.1 | 42.248 | 258 | 61 | 8 | 9 | 178 | 36 | 293 | 7.82e-50 | 163 |
| Msa0170410 | AT3G15540.1 | 45.989 | 187 | 76 | 5 | 11 | 177 | 6 | 187 | 1.67e-44 | 146 |
| Msa0170410 | AT1G15580.1 | 50.000 | 172 | 69 | 6 | 9 | 177 | 6 | 163 | 2.95e-44 | 144 |
| Msa0170410 | AT2G22670.5 | 48.101 | 158 | 55 | 4 | 48 | 178 | 150 | 307 | 1.35e-42 | 145 |
| Msa0170410 | AT2G22670.2 | 48.101 | 158 | 55 | 4 | 48 | 178 | 150 | 307 | 1.35e-42 | 145 |
| Msa0170410 | AT2G22670.3 | 48.101 | 158 | 55 | 4 | 48 | 178 | 150 | 307 | 1.44e-42 | 144 |
| Msa0170410 | AT2G22670.1 | 48.101 | 158 | 55 | 4 | 48 | 178 | 150 | 307 | 1.44e-42 | 144 |
| Msa0170410 | AT2G22670.4 | 48.101 | 158 | 55 | 4 | 48 | 178 | 167 | 324 | 1.49e-42 | 145 |
| Msa0170410 | AT1G52830.1 | 45.556 | 180 | 83 | 4 | 11 | 177 | 6 | 183 | 7.44e-42 | 139 |
| Msa0170410 | AT5G65670.2 | 49.655 | 145 | 47 | 4 | 60 | 178 | 180 | 324 | 2.03e-40 | 139 |
| Msa0170410 | AT5G65670.1 | 49.655 | 145 | 47 | 4 | 60 | 178 | 180 | 324 | 2.08e-40 | 139 |
| Msa0170410 | AT4G14550.3 | 42.051 | 195 | 65 | 6 | 11 | 157 | 1 | 195 | 4.92e-40 | 134 |
| Msa0170410 | AT3G23050.2 | 40.488 | 205 | 65 | 7 | 11 | 158 | 6 | 210 | 1.14e-37 | 129 |
| Msa0170410 | AT2G33310.3 | 36.313 | 179 | 74 | 4 | 40 | 178 | 52 | 230 | 1.10e-29 | 109 |
| Msa0170410 | AT2G33310.1 | 36.313 | 179 | 74 | 4 | 40 | 178 | 52 | 230 | 1.10e-29 | 109 |
| Msa0170410 | AT4G28640.1 | 40.000 | 165 | 61 | 5 | 51 | 177 | 76 | 240 | 1.46e-29 | 109 |
| Msa0170410 | AT4G28640.3 | 40.000 | 165 | 61 | 5 | 51 | 177 | 76 | 240 | 1.89e-29 | 108 |
| Msa0170410 | AT1G04550.2 | 35.754 | 179 | 74 | 4 | 40 | 178 | 46 | 223 | 9.28e-29 | 107 |
| Msa0170410 | AT4G28640.2 | 40.000 | 165 | 61 | 5 | 51 | 177 | 76 | 240 | 1.10e-28 | 108 |
| Msa0170410 | AT2G33310.2 | 36.667 | 180 | 73 | 5 | 40 | 178 | 52 | 231 | 1.26e-28 | 107 |
| Msa0170410 | AT3G16500.1 | 32.456 | 228 | 94 | 7 | 7 | 174 | 25 | 252 | 3.22e-28 | 106 |
| Msa0170410 | AT3G16500.2 | 32.719 | 217 | 90 | 6 | 14 | 174 | 36 | 252 | 3.87e-28 | 106 |
| Msa0170410 | AT1G51950.1 | 32.864 | 213 | 89 | 6 | 14 | 174 | 40 | 250 | 6.05e-26 | 100 |
| Msa0170410 | AT4G14550.4 | 40.397 | 151 | 54 | 5 | 11 | 125 | 1 | 151 | 1.03e-25 | 97.8 |
| Msa0170410 | AT3G17600.1 | 39.394 | 132 | 65 | 4 | 48 | 171 | 30 | 154 | 1.64e-25 | 96.7 |
| Msa0170410 | AT5G25890.1 | 35.260 | 173 | 86 | 6 | 14 | 174 | 5 | 163 | 2.00e-25 | 96.7 |
| Msa0170410 | AT1G04100.1 | 39.394 | 165 | 49 | 4 | 65 | 178 | 95 | 259 | 2.07e-24 | 96.3 |
| Msa0170410 | AT3G23050.3 | 38.889 | 162 | 54 | 6 | 11 | 127 | 6 | 167 | 6.33e-24 | 92.8 |
| Msa0170410 | AT2G46990.1 | 43.182 | 88 | 50 | 0 | 86 | 173 | 85 | 172 | 2.88e-20 | 83.2 |
| Msa0170410 | AT3G62100.1 | 45.349 | 86 | 47 | 0 | 86 | 171 | 83 | 168 | 3.39e-20 | 83.2 |
| Msa0170410 | AT1G80390.1 | 40.171 | 117 | 60 | 3 | 12 | 124 | 15 | 125 | 5.37e-19 | 79.0 |
| Msa0170410 | AT2G46990.2 | 45.205 | 73 | 40 | 0 | 86 | 158 | 85 | 157 | 3.94e-15 | 69.3 |
| Msa0170410 | AT3G62100.2 | 45.205 | 73 | 40 | 0 | 86 | 158 | 83 | 155 | 1.21e-14 | 68.2 |
| Msa0170410 | AT4G32280.2 | 34.884 | 86 | 51 | 2 | 86 | 171 | 118 | 198 | 3.05e-13 | 65.5 |
| Msa0170410 | AT4G32280.1 | 34.884 | 86 | 51 | 2 | 86 | 171 | 160 | 240 | 9.54e-13 | 64.7 |
| Msa0170410 | AT2G01200.2 | 39.175 | 97 | 56 | 2 | 76 | 171 | 89 | 183 | 4.58e-11 | 59.3 |
| Msa0170410 | AT2G01200.1 | 39.175 | 97 | 56 | 2 | 76 | 171 | 89 | 183 | 4.58e-11 | 59.3 |
Find 54 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAACATTAATTAATTTC+TGG | 0.174082 | 1_4:+54402437 | Msa0170410:three_prime_UTR |
| TTACAAGAGGCTGAGGCTTC+TGG | 0.222165 | 1_4:+54401823 | Msa0170410:CDS |
| AACCTTTCTGCTTGTGTTAT+CGG | 0.235448 | 1_4:+54402291 | Msa0170410:three_prime_UTR |
| TTCTTCCTGTAAGATCTTAT+TGG | 0.258525 | 1_4:-54401796 | None:intergenic |
| AAGATTGATTTGAGGGTCTA+TGG | 0.290855 | 1_4:+54401889 | Msa0170410:CDS |
| TGCACAACTTCTTAAAGCTT+TGG | 0.324497 | 1_4:+54401918 | Msa0170410:CDS |
| TCCTTTGAAGTTTCAGTCAA+TGG | 0.340316 | 1_4:-54401601 | None:intergenic |
| CTATCTGAAGTTGTGCTCTA+AGG | 0.354793 | 1_4:+54402378 | Msa0170410:three_prime_UTR |
| TAAATTTCTTTGTTATTGAA+TGG | 0.358362 | 1_4:+54402673 | Msa0170410:three_prime_UTR |
| TATGTGAAAGTGAGTTTAGA+TGG | 0.375233 | 1_4:+54401850 | Msa0170410:CDS |
| TTTCTGAATTATTTGAAAGA+TGG | 0.377562 | 1_4:+54401465 | Msa0170410:exon |
| CCTTAGGAAGATTGATTTGA+GGG | 0.380707 | 1_4:+54401882 | Msa0170410:CDS |
| GAGCTAAGATTAGGACTTCC+AGG | 0.382329 | 1_4:+54401532 | Msa0170410:CDS |
| ACTTGCAGGGCTAAGATAGT+AGG | 0.383062 | 1_4:+54401766 | Msa0170410:intron |
| TACAAGAGGCTGAGGCTTCT+GGG | 0.384427 | 1_4:+54401824 | Msa0170410:CDS |
| GTATGAAAAGTGAAGTGTTT+TGG | 0.392609 | 1_4:+54402246 | Msa0170410:three_prime_UTR |
| CCATCTTTATCTTCATATGT+AGG | 0.415484 | 1_4:-54402009 | None:intergenic |
| TTCTGGTTACTTTAGCATCT+AGG | 0.421644 | 1_4:+54402454 | Msa0170410:three_prime_UTR |
| GGCCACCAATAAGATCTTAC+AGG | 0.438714 | 1_4:+54401791 | Msa0170410:CDS |
| CTTAGAGCACAACTTCAGAT+AGG | 0.438793 | 1_4:-54402377 | None:intergenic |
| GATGGTGATTGGATGTTAGT+TGG | 0.443053 | 1_4:+54402027 | Msa0170410:CDS |
| TAGATGGAGCTCCTTACCTT+AGG | 0.462831 | 1_4:+54401866 | Msa0170410:CDS |
| TTCCTGTAAGATCTTATTGG+TGG | 0.463988 | 1_4:-54401793 | None:intergenic |
| TCAAATGAAAGAGATAGAAA+AGG | 0.479155 | 1_4:+54402566 | Msa0170410:three_prime_UTR |
| ATGAAGATAAAGATGGTGAT+TGG | 0.480229 | 1_4:+54402016 | Msa0170410:CDS |
| CAAGAAAGAAAGTCCTTGTA+AGG | 0.484427 | 1_4:-54401442 | None:intergenic |
| TATCGGAAGAACTAAACAAA+TGG | 0.489024 | 1_4:+54402308 | Msa0170410:three_prime_UTR |
| ACCTTAGGAAGATTGATTTG+AGG | 0.502641 | 1_4:+54401881 | Msa0170410:CDS |
| AAGGCTACTGAGCTAAGATT+AGG | 0.511132 | 1_4:+54401523 | Msa0170410:CDS |
| CAAATGAAAGAGATAGAAAA+GGG | 0.511488 | 1_4:+54402567 | Msa0170410:three_prime_UTR |
| AAATCAATCTTCCTAAGGTA+AGG | 0.513222 | 1_4:-54401877 | None:intergenic |
| CTGAAGTTGTGCTCTAAGGA+AGG | 0.514838 | 1_4:+54402382 | Msa0170410:three_prime_UTR |
| CCCTCAAATCAATCTTCCTA+AGG | 0.515293 | 1_4:-54401882 | None:intergenic |
| TTCCGATAACACAAGCAGAA+AGG | 0.522135 | 1_4:-54402293 | None:intergenic |
| CCAGAAATTAATTAATGTTG+AGG | 0.525082 | 1_4:-54402437 | None:intergenic |
| TGTGCTCTAAGGAAGGGAAA+TGG | 0.525813 | 1_4:+54402389 | Msa0170410:three_prime_UTR |
| TGAAGTTGTGCTCTAAGGAA+GGG | 0.550378 | 1_4:+54402383 | Msa0170410:three_prime_UTR |
| ACAAGTGAATCAACCTTACA+AGG | 0.550779 | 1_4:+54401429 | Msa0170410:five_prime_UTR |
| CTTGCAGGGCTAAGATAGTA+GGG | 0.554533 | 1_4:+54401767 | Msa0170410:intron |
| GAACAGTTTACAAGAGGCTG+AGG | 0.558668 | 1_4:+54401816 | Msa0170410:CDS |
| ATATATGATGATAAAGGAGA+AGG | 0.564955 | 1_4:-54401336 | None:intergenic |
| TGTTAGTTGGAGATGTTCCA+TGG | 0.566837 | 1_4:+54402040 | Msa0170410:CDS |
| CCTACATATGAAGATAAAGA+TGG | 0.572828 | 1_4:+54402009 | Msa0170410:CDS |
| ACCATTGACTGAAACTTCAA+AGG | 0.585923 | 1_4:+54401600 | Msa0170410:CDS |
| TGAGAATGATCTCAACATGA+AGG | 0.586923 | 1_4:+54401504 | Msa0170410:CDS |
| ATTGATTTGAGGGTCTATGG+TGG | 0.593128 | 1_4:+54401892 | Msa0170410:CDS |
| AGATGAAAATACAAGTATGC+AGG | 0.597279 | 1_4:-54401368 | None:intergenic |
| CAGGAAGAACAGTTTACAAG+AGG | 0.599653 | 1_4:+54401810 | Msa0170410:CDS |
| GTTAGTTGGAGATGTTCCAT+GGG | 0.617620 | 1_4:+54402041 | Msa0170410:CDS |
| AAAAGACTAAGAATCATGAA+AGG | 0.633080 | 1_4:+54402182 | Msa0170410:CDS |
| AGCATGTTCAAGTTAACCAT+AGG | 0.640019 | 1_4:+54401943 | Msa0170410:CDS |
| AGCTAAGATTAGGACTTCCA+GGG | 0.649383 | 1_4:+54401533 | Msa0170410:CDS |
| ATGAAAGGATCAGAAACTAG+AGG | 0.654320 | 1_4:+54402197 | Msa0170410:CDS |
| GCAGGGCTAAGATAGTAGGG+TGG | 0.770265 | 1_4:+54401770 | Msa0170410:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATATATGATGATAA+AGG | - | chr1_4:54401345-54401364 | None:intergenic | 10.0% |
| !!! | TATTTTATATATGATGATAA+AGG | - | chr1_4:54401345-54401364 | None:intergenic | 10.0% |
| !! | ATTAGTTCAAAAACAAAAAT+AGG | - | chr1_4:54402074-54402093 | None:intergenic | 15.0% |
| !!! | TAAATTTCTTTGTTATTGAA+TGG | + | chr1_4:54402673-54402692 | Msa0170410:three_prime_UTR | 15.0% |
| !! | ATTAGTTCAAAAACAAAAAT+AGG | - | chr1_4:54402074-54402093 | None:intergenic | 15.0% |
| !!! | TAAATTTCTTTGTTATTGAA+TGG | + | chr1_4:54402673-54402692 | Msa0170410:three_prime_UTR | 15.0% |
| !! | TTTCTGAATTATTTGAAAGA+TGG | + | chr1_4:54401465-54401484 | Msa0170410:exon | 20.0% |
| !! | TTTATAAGGTAGAAAGAAAA+AGG | - | chr1_4:54401704-54401723 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCTACCTTATAA+AGG | + | chr1_4:54401703-54401722 | Msa0170410:intron | 20.0% |
| !!! | TTTTCTTTCTACCTTATAAA+GGG | + | chr1_4:54401704-54401723 | Msa0170410:intron | 20.0% |
| !!! | TTGTTTTTGAACTAATTTGA+TGG | + | chr1_4:54402078-54402097 | Msa0170410:intron | 20.0% |
| !! | AAATTAAACTGACATAACTA+TGG | + | chr1_4:54402127-54402146 | Msa0170410:intron | 20.0% |
| !! | AGAAAGAAAAAAAAAATCAG+TGG | - | chr1_4:54402511-54402530 | None:intergenic | 20.0% |
| !! | TTTCTGAATTATTTGAAAGA+TGG | + | chr1_4:54401465-54401484 | Msa0170410:exon | 20.0% |
| !! | TTTATAAGGTAGAAAGAAAA+AGG | - | chr1_4:54401704-54401723 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCTACCTTATAA+AGG | + | chr1_4:54401703-54401722 | Msa0170410:intron | 20.0% |
| !!! | TTTTCTTTCTACCTTATAAA+GGG | + | chr1_4:54401704-54401723 | Msa0170410:intron | 20.0% |
| !!! | TTGTTTTTGAACTAATTTGA+TGG | + | chr1_4:54402078-54402097 | Msa0170410:intron | 20.0% |
| !! | AAATTAAACTGACATAACTA+TGG | + | chr1_4:54402127-54402146 | Msa0170410:intron | 20.0% |
| !! | AGAAAGAAAAAAAAAATCAG+TGG | - | chr1_4:54402511-54402530 | None:intergenic | 20.0% |
| !! | ATCTTTTGAACTTACTTTGA+AGG | - | chr1_4:54401661-54401680 | None:intergenic | 25.0% |
| !!! | AGAATATTTTTTTGACTTGC+AGG | + | chr1_4:54401752-54401771 | Msa0170410:intron | 25.0% |
| !!! | GAATATTTTTTTGACTTGCA+GGG | + | chr1_4:54401753-54401772 | Msa0170410:intron | 25.0% |
| !!! | TTTTTCAGAATAATCACCTA+TGG | - | chr1_4:54401962-54401981 | None:intergenic | 25.0% |
| ! | TCTGAAAAAGAAGGTTATAA+AGG | + | chr1_4:54401973-54401992 | Msa0170410:CDS | 25.0% |
| ! | AAAAGACTAAGAATCATGAA+AGG | + | chr1_4:54402182-54402201 | Msa0170410:CDS | 25.0% |
| ! | CCAGAAATTAATTAATGTTG+AGG | - | chr1_4:54402440-54402459 | None:intergenic | 25.0% |
| ! | CCTCAACATTAATTAATTTC+TGG | + | chr1_4:54402437-54402456 | Msa0170410:three_prime_UTR | 25.0% |
| ! | TCAAATGAAAGAGATAGAAA+AGG | + | chr1_4:54402566-54402585 | Msa0170410:three_prime_UTR | 25.0% |
| ! | CAAATGAAAGAGATAGAAAA+GGG | + | chr1_4:54402567-54402586 | Msa0170410:three_prime_UTR | 25.0% |
| ! | CATCAATACAAGAAAAAACT+TGG | - | chr1_4:54402618-54402637 | None:intergenic | 25.0% |
| !! | ATCTTTTGAACTTACTTTGA+AGG | - | chr1_4:54401661-54401680 | None:intergenic | 25.0% |
| !!! | AGAATATTTTTTTGACTTGC+AGG | + | chr1_4:54401752-54401771 | Msa0170410:intron | 25.0% |
| !!! | GAATATTTTTTTGACTTGCA+GGG | + | chr1_4:54401753-54401772 | Msa0170410:intron | 25.0% |
| !!! | TTTTTCAGAATAATCACCTA+TGG | - | chr1_4:54401962-54401981 | None:intergenic | 25.0% |
| ! | TCTGAAAAAGAAGGTTATAA+AGG | + | chr1_4:54401973-54401992 | Msa0170410:CDS | 25.0% |
| ! | AAAAGACTAAGAATCATGAA+AGG | + | chr1_4:54402182-54402201 | Msa0170410:CDS | 25.0% |
| ! | CCAGAAATTAATTAATGTTG+AGG | - | chr1_4:54402440-54402459 | None:intergenic | 25.0% |
| ! | CCTCAACATTAATTAATTTC+TGG | + | chr1_4:54402437-54402456 | Msa0170410:three_prime_UTR | 25.0% |
| ! | TCAAATGAAAGAGATAGAAA+AGG | + | chr1_4:54402566-54402585 | Msa0170410:three_prime_UTR | 25.0% |
| ! | CAAATGAAAGAGATAGAAAA+GGG | + | chr1_4:54402567-54402586 | Msa0170410:three_prime_UTR | 25.0% |
| ! | CATCAATACAAGAAAAAACT+TGG | - | chr1_4:54402618-54402637 | None:intergenic | 25.0% |
| AGATGAAAATACAAGTATGC+AGG | - | chr1_4:54401371-54401390 | None:intergenic | 30.0% | |
| !! | TTTTGAACTTACTTTGAAGG+AGG | - | chr1_4:54401658-54401677 | None:intergenic | 30.0% |
| TTCTTCCTGTAAGATCTTAT+TGG | - | chr1_4:54401799-54401818 | None:intergenic | 30.0% | |
| TATGTGAAAGTGAGTTTAGA+TGG | + | chr1_4:54401850-54401869 | Msa0170410:CDS | 30.0% | |
| AAATCAATCTTCCTAAGGTA+AGG | - | chr1_4:54401880-54401899 | None:intergenic | 30.0% | |
| ! | GGTGATTATTCTGAAAAAGA+AGG | + | chr1_4:54401964-54401983 | Msa0170410:CDS | 30.0% |
| CCATCTTTATCTTCATATGT+AGG | - | chr1_4:54402012-54402031 | None:intergenic | 30.0% | |
| CCTACATATGAAGATAAAGA+TGG | + | chr1_4:54402009-54402028 | Msa0170410:CDS | 30.0% | |
| ATGAAGATAAAGATGGTGAT+TGG | + | chr1_4:54402016-54402035 | Msa0170410:CDS | 30.0% | |
| !! | GTATGAAAAGTGAAGTGTTT+TGG | + | chr1_4:54402246-54402265 | Msa0170410:three_prime_UTR | 30.0% |
| TATCGGAAGAACTAAACAAA+TGG | + | chr1_4:54402308-54402327 | Msa0170410:three_prime_UTR | 30.0% | |
| AGATGAAAATACAAGTATGC+AGG | - | chr1_4:54401371-54401390 | None:intergenic | 30.0% | |
| !! | TTTTGAACTTACTTTGAAGG+AGG | - | chr1_4:54401658-54401677 | None:intergenic | 30.0% |
| TTCTTCCTGTAAGATCTTAT+TGG | - | chr1_4:54401799-54401818 | None:intergenic | 30.0% | |
| TATGTGAAAGTGAGTTTAGA+TGG | + | chr1_4:54401850-54401869 | Msa0170410:CDS | 30.0% | |
| AAATCAATCTTCCTAAGGTA+AGG | - | chr1_4:54401880-54401899 | None:intergenic | 30.0% | |
| ! | GGTGATTATTCTGAAAAAGA+AGG | + | chr1_4:54401964-54401983 | Msa0170410:CDS | 30.0% |
| CCATCTTTATCTTCATATGT+AGG | - | chr1_4:54402012-54402031 | None:intergenic | 30.0% | |
| CCTACATATGAAGATAAAGA+TGG | + | chr1_4:54402009-54402028 | Msa0170410:CDS | 30.0% | |
| ATGAAGATAAAGATGGTGAT+TGG | + | chr1_4:54402016-54402035 | Msa0170410:CDS | 30.0% | |
| !! | GTATGAAAAGTGAAGTGTTT+TGG | + | chr1_4:54402246-54402265 | Msa0170410:three_prime_UTR | 30.0% |
| TATCGGAAGAACTAAACAAA+TGG | + | chr1_4:54402308-54402327 | Msa0170410:three_prime_UTR | 30.0% | |
| ACAAGTGAATCAACCTTACA+AGG | + | chr1_4:54401429-54401448 | Msa0170410:five_prime_UTR | 35.0% | |
| CAAGAAAGAAAGTCCTTGTA+AGG | - | chr1_4:54401445-54401464 | None:intergenic | 35.0% | |
| TGAGAATGATCTCAACATGA+AGG | + | chr1_4:54401504-54401523 | Msa0170410:CDS | 35.0% | |
| ! | TTCAGTCAATGGTCTTTTGT+TGG | - | chr1_4:54401593-54401612 | None:intergenic | 35.0% |
| ! | ACCATTGACTGAAACTTCAA+AGG | + | chr1_4:54401600-54401619 | Msa0170410:CDS | 35.0% |
| !! | TCCTTTGAAGTTTCAGTCAA+TGG | - | chr1_4:54401604-54401623 | None:intergenic | 35.0% |
| ACATCATGCAACCCTTTATA+AGG | - | chr1_4:54401718-54401737 | None:intergenic | 35.0% | |
| TTCCTGTAAGATCTTATTGG+TGG | - | chr1_4:54401796-54401815 | None:intergenic | 35.0% | |
| !! | ACCTTAGGAAGATTGATTTG+AGG | + | chr1_4:54401881-54401900 | Msa0170410:CDS | 35.0% |
| !! | CCTTAGGAAGATTGATTTGA+GGG | + | chr1_4:54401882-54401901 | Msa0170410:CDS | 35.0% |
| !! | AAGATTGATTTGAGGGTCTA+TGG | + | chr1_4:54401889-54401908 | Msa0170410:CDS | 35.0% |
| TGCACAACTTCTTAAAGCTT+TGG | + | chr1_4:54401918-54401937 | Msa0170410:CDS | 35.0% | |
| ! | AGCATGTTCAAGTTAACCAT+AGG | + | chr1_4:54401943-54401962 | Msa0170410:CDS | 35.0% |
| AAAAATAGGACTTACTCCCA+TGG | - | chr1_4:54402060-54402079 | None:intergenic | 35.0% | |
| !! | CATGATTCTTAGTCTTTTGC+AGG | - | chr1_4:54402180-54402199 | None:intergenic | 35.0% |
| ATGAAAGGATCAGAAACTAG+AGG | + | chr1_4:54402197-54402216 | Msa0170410:CDS | 35.0% | |
| AACCTTTCTGCTTGTGTTAT+CGG | + | chr1_4:54402291-54402310 | Msa0170410:three_prime_UTR | 35.0% | |
| ! | TTCTGGTTACTTTAGCATCT+AGG | + | chr1_4:54402454-54402473 | Msa0170410:three_prime_UTR | 35.0% |
| ACAAGTGAATCAACCTTACA+AGG | + | chr1_4:54401429-54401448 | Msa0170410:five_prime_UTR | 35.0% | |
| CAAGAAAGAAAGTCCTTGTA+AGG | - | chr1_4:54401445-54401464 | None:intergenic | 35.0% | |
| TGAGAATGATCTCAACATGA+AGG | + | chr1_4:54401504-54401523 | Msa0170410:CDS | 35.0% | |
| ! | TTCAGTCAATGGTCTTTTGT+TGG | - | chr1_4:54401593-54401612 | None:intergenic | 35.0% |
| ! | ACCATTGACTGAAACTTCAA+AGG | + | chr1_4:54401600-54401619 | Msa0170410:CDS | 35.0% |
| !! | TCCTTTGAAGTTTCAGTCAA+TGG | - | chr1_4:54401604-54401623 | None:intergenic | 35.0% |
| ACATCATGCAACCCTTTATA+AGG | - | chr1_4:54401718-54401737 | None:intergenic | 35.0% | |
| TTCCTGTAAGATCTTATTGG+TGG | - | chr1_4:54401796-54401815 | None:intergenic | 35.0% | |
| !! | ACCTTAGGAAGATTGATTTG+AGG | + | chr1_4:54401881-54401900 | Msa0170410:CDS | 35.0% |
| !! | CCTTAGGAAGATTGATTTGA+GGG | + | chr1_4:54401882-54401901 | Msa0170410:CDS | 35.0% |
| !! | AAGATTGATTTGAGGGTCTA+TGG | + | chr1_4:54401889-54401908 | Msa0170410:CDS | 35.0% |
| TGCACAACTTCTTAAAGCTT+TGG | + | chr1_4:54401918-54401937 | Msa0170410:CDS | 35.0% | |
| ! | AGCATGTTCAAGTTAACCAT+AGG | + | chr1_4:54401943-54401962 | Msa0170410:CDS | 35.0% |
| AAAAATAGGACTTACTCCCA+TGG | - | chr1_4:54402060-54402079 | None:intergenic | 35.0% | |
| !! | CATGATTCTTAGTCTTTTGC+AGG | - | chr1_4:54402180-54402199 | None:intergenic | 35.0% |
| ATGAAAGGATCAGAAACTAG+AGG | + | chr1_4:54402197-54402216 | Msa0170410:CDS | 35.0% | |
| AACCTTTCTGCTTGTGTTAT+CGG | + | chr1_4:54402291-54402310 | Msa0170410:three_prime_UTR | 35.0% | |
| ! | TTCTGGTTACTTTAGCATCT+AGG | + | chr1_4:54402454-54402473 | Msa0170410:three_prime_UTR | 35.0% |
| AAGGCTACTGAGCTAAGATT+AGG | + | chr1_4:54401523-54401542 | Msa0170410:CDS | 40.0% | |
| AGCTAAGATTAGGACTTCCA+GGG | + | chr1_4:54401533-54401552 | Msa0170410:CDS | 40.0% | |
| ! | TCTTCATTTTGTTCTGTCCC+TGG | - | chr1_4:54401553-54401572 | None:intergenic | 40.0% |
| CAGGAAGAACAGTTTACAAG+AGG | + | chr1_4:54401810-54401829 | Msa0170410:CDS | 40.0% | |
| CCCTCAAATCAATCTTCCTA+AGG | - | chr1_4:54401885-54401904 | None:intergenic | 40.0% | |
| !! | ATTGATTTGAGGGTCTATGG+TGG | + | chr1_4:54401892-54401911 | Msa0170410:CDS | 40.0% |
| GATGGTGATTGGATGTTAGT+TGG | + | chr1_4:54402027-54402046 | Msa0170410:CDS | 40.0% | |
| TGTTAGTTGGAGATGTTCCA+TGG | + | chr1_4:54402040-54402059 | Msa0170410:CDS | 40.0% | |
| GTTAGTTGGAGATGTTCCAT+GGG | + | chr1_4:54402041-54402060 | Msa0170410:CDS | 40.0% | |
| !!! | AGTGAAGTGTTTTGGTGTGA+AGG | + | chr1_4:54402254-54402273 | Msa0170410:three_prime_UTR | 40.0% |
| !!! | GTGAAGTGTTTTGGTGTGAA+GGG | + | chr1_4:54402255-54402274 | Msa0170410:three_prime_UTR | 40.0% |
| TTCCGATAACACAAGCAGAA+AGG | - | chr1_4:54402296-54402315 | None:intergenic | 40.0% | |
| CTTAGAGCACAACTTCAGAT+AGG | - | chr1_4:54402380-54402399 | None:intergenic | 40.0% | |
| ! | CTATCTGAAGTTGTGCTCTA+AGG | + | chr1_4:54402378-54402397 | Msa0170410:three_prime_UTR | 40.0% |
| !! | TGAAGTTGTGCTCTAAGGAA+GGG | + | chr1_4:54402383-54402402 | Msa0170410:three_prime_UTR | 40.0% |
| AAGGCTACTGAGCTAAGATT+AGG | + | chr1_4:54401523-54401542 | Msa0170410:CDS | 40.0% | |
| AGCTAAGATTAGGACTTCCA+GGG | + | chr1_4:54401533-54401552 | Msa0170410:CDS | 40.0% | |
| ! | TCTTCATTTTGTTCTGTCCC+TGG | - | chr1_4:54401553-54401572 | None:intergenic | 40.0% |
| CAGGAAGAACAGTTTACAAG+AGG | + | chr1_4:54401810-54401829 | Msa0170410:CDS | 40.0% | |
| CCCTCAAATCAATCTTCCTA+AGG | - | chr1_4:54401885-54401904 | None:intergenic | 40.0% | |
| !! | ATTGATTTGAGGGTCTATGG+TGG | + | chr1_4:54401892-54401911 | Msa0170410:CDS | 40.0% |
| GATGGTGATTGGATGTTAGT+TGG | + | chr1_4:54402027-54402046 | Msa0170410:CDS | 40.0% | |
| TGTTAGTTGGAGATGTTCCA+TGG | + | chr1_4:54402040-54402059 | Msa0170410:CDS | 40.0% | |
| GTTAGTTGGAGATGTTCCAT+GGG | + | chr1_4:54402041-54402060 | Msa0170410:CDS | 40.0% | |
| !!! | AGTGAAGTGTTTTGGTGTGA+AGG | + | chr1_4:54402254-54402273 | Msa0170410:three_prime_UTR | 40.0% |
| !!! | GTGAAGTGTTTTGGTGTGAA+GGG | + | chr1_4:54402255-54402274 | Msa0170410:three_prime_UTR | 40.0% |
| TTCCGATAACACAAGCAGAA+AGG | - | chr1_4:54402296-54402315 | None:intergenic | 40.0% | |
| CTTAGAGCACAACTTCAGAT+AGG | - | chr1_4:54402380-54402399 | None:intergenic | 40.0% | |
| ! | CTATCTGAAGTTGTGCTCTA+AGG | + | chr1_4:54402378-54402397 | Msa0170410:three_prime_UTR | 40.0% |
| !! | TGAAGTTGTGCTCTAAGGAA+GGG | + | chr1_4:54402383-54402402 | Msa0170410:three_prime_UTR | 40.0% |
| GAGCTAAGATTAGGACTTCC+AGG | + | chr1_4:54401532-54401551 | Msa0170410:CDS | 45.0% | |
| ACTTGCAGGGCTAAGATAGT+AGG | + | chr1_4:54401766-54401785 | Msa0170410:intron | 45.0% | |
| CTTGCAGGGCTAAGATAGTA+GGG | + | chr1_4:54401767-54401786 | Msa0170410:intron | 45.0% | |
| GGCCACCAATAAGATCTTAC+AGG | + | chr1_4:54401791-54401810 | Msa0170410:CDS | 45.0% | |
| GAACAGTTTACAAGAGGCTG+AGG | + | chr1_4:54401816-54401835 | Msa0170410:CDS | 45.0% | |
| TAGATGGAGCTCCTTACCTT+AGG | + | chr1_4:54401866-54401885 | Msa0170410:CDS | 45.0% | |
| !! | CTGAAGTTGTGCTCTAAGGA+AGG | + | chr1_4:54402382-54402401 | Msa0170410:three_prime_UTR | 45.0% |
| !! | TGTGCTCTAAGGAAGGGAAA+TGG | + | chr1_4:54402389-54402408 | Msa0170410:three_prime_UTR | 45.0% |
| GAGCTAAGATTAGGACTTCC+AGG | + | chr1_4:54401532-54401551 | Msa0170410:CDS | 45.0% | |
| ACTTGCAGGGCTAAGATAGT+AGG | + | chr1_4:54401766-54401785 | Msa0170410:intron | 45.0% | |
| CTTGCAGGGCTAAGATAGTA+GGG | + | chr1_4:54401767-54401786 | Msa0170410:intron | 45.0% | |
| GGCCACCAATAAGATCTTAC+AGG | + | chr1_4:54401791-54401810 | Msa0170410:CDS | 45.0% | |
| GAACAGTTTACAAGAGGCTG+AGG | + | chr1_4:54401816-54401835 | Msa0170410:CDS | 45.0% | |
| TAGATGGAGCTCCTTACCTT+AGG | + | chr1_4:54401866-54401885 | Msa0170410:CDS | 45.0% | |
| !! | CTGAAGTTGTGCTCTAAGGA+AGG | + | chr1_4:54402382-54402401 | Msa0170410:three_prime_UTR | 45.0% |
| !! | TGTGCTCTAAGGAAGGGAAA+TGG | + | chr1_4:54402389-54402408 | Msa0170410:three_prime_UTR | 45.0% |
| TTACAAGAGGCTGAGGCTTC+TGG | + | chr1_4:54401823-54401842 | Msa0170410:CDS | 50.0% | |
| TACAAGAGGCTGAGGCTTCT+GGG | + | chr1_4:54401824-54401843 | Msa0170410:CDS | 50.0% | |
| TTACAAGAGGCTGAGGCTTC+TGG | + | chr1_4:54401823-54401842 | Msa0170410:CDS | 50.0% | |
| TACAAGAGGCTGAGGCTTCT+GGG | + | chr1_4:54401824-54401843 | Msa0170410:CDS | 50.0% | |
| GCAGGGCTAAGATAGTAGGG+TGG | + | chr1_4:54401770-54401789 | Msa0170410:intron | 55.0% | |
| GCAGGGCTAAGATAGTAGGG+TGG | + | chr1_4:54401770-54401789 | Msa0170410:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 54401339 | 54402718 | 54401339 | ID=Msa0170410;Name=Msa0170410 |
| chr1_4 | mRNA | 54401339 | 54402718 | 54401339 | ID=Msa0170410-mRNA-1;Parent=Msa0170410;Name=Msa0170410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=145|1|1|1|1|1|3|492|178 |
| chr1_4 | exon | 54401339 | 54401665 | 54401339 | ID=Msa0170410-mRNA-1:exon:16256;Parent=Msa0170410-mRNA-1 |
| chr1_4 | exon | 54401774 | 54402064 | 54401774 | ID=Msa0170410-mRNA-1:exon:16257;Parent=Msa0170410-mRNA-1 |
| chr1_4 | exon | 54402163 | 54402718 | 54402163 | ID=Msa0170410-mRNA-1:exon:16258;Parent=Msa0170410-mRNA-1 |
| chr1_4 | five_prime_UTR | 54401339 | 54401483 | 54401339 | ID=Msa0170410-mRNA-1:five_prime_utr;Parent=Msa0170410-mRNA-1 |
| chr1_4 | CDS | 54401484 | 54401665 | 54401484 | ID=Msa0170410-mRNA-1:cds;Parent=Msa0170410-mRNA-1 |
| chr1_4 | CDS | 54401774 | 54402064 | 54401774 | ID=Msa0170410-mRNA-1:cds;Parent=Msa0170410-mRNA-1 |
| chr1_4 | CDS | 54402163 | 54402226 | 54402163 | ID=Msa0170410-mRNA-1:cds;Parent=Msa0170410-mRNA-1 |
| chr1_4 | three_prime_UTR | 54402227 | 54402718 | 54402227 | ID=Msa0170410-mRNA-1:three_prime_utr;Parent=Msa0170410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
