AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0712080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0712080 MtrunA17_Chr5g0396491 99.376 481 3 0 1 481 1 481 0.0 990
Msa0712080 MtrunA17_Chr4g0038851 75.783 479 108 6 4 481 1 472 0.0 742
Msa0712080 MtrunA17_Chr3g0085681 54.139 447 193 5 34 480 4 438 6.01e-170 486
Msa0712080 MtrunA17_Chr3g0085361 55.056 356 148 5 125 480 9 352 1.03e-133 390
Msa0712080 MtrunA17_Chr7g0224271 34.658 453 209 7 45 478 289 673 4.55e-83 270
Msa0712080 MtrunA17_Chr5g0447691 30.254 433 233 8 53 478 174 544 8.97e-60 205
Msa0712080 MtrunA17_Chr8g0357601 30.455 440 236 10 49 479 175 553 2.12e-59 204
Msa0712080 MtrunA17_Chr1g0159461 28.605 430 240 7 55 478 224 592 7.45e-54 190
Msa0712080 MtrunA17_Chr2g0306641 29.571 443 232 10 47 479 116 488 5.03e-53 186
Msa0712080 MtrunA17_Chr3g0125811 28.140 430 242 7 55 478 202 570 1.89e-52 186
Msa0712080 MtrunA17_Chr4g0031721 28.009 432 237 7 56 477 316 683 7.12e-47 172
Msa0712080 MtrunA17_Chr4g0031701 25.959 443 260 6 42 475 240 623 4.57e-46 169
Msa0712080 MtrunA17_Chr4g0057891 27.563 439 249 13 50 479 143 521 6.48e-46 167
Msa0712080 MtrunA17_Chr4g0031711 27.189 434 248 7 53 477 358 732 1.10e-45 169
Msa0712080 MtrunA17_Chr4g0031741 26.620 432 247 7 53 477 281 649 3.18e-45 167
Msa0712080 MtrunA17_Chr1g0207361 92.079 101 8 0 282 382 64 164 9.84e-45 154
Msa0712080 MtrunA17_Chr1g0207361 90.741 54 5 0 90 143 1 54 2.39e-27 107
Msa0712080 MtrunA17_Chr2g0290241 27.635 427 247 10 57 479 58 426 2.39e-43 158
Msa0712080 MtrunA17_Chr4g0031731 25.734 443 261 7 42 475 240 623 3.00e-43 161
Msa0712080 MtrunA17_Chr7g0238891 27.040 429 247 7 56 478 372 740 2.28e-42 160
Msa0712080 MtrunA17_Chr2g0328341 26.531 441 258 9 42 477 258 637 2.51e-42 159
Msa0712080 MtrunA17_Chr4g0076091 26.512 430 246 10 56 477 175 542 3.44e-42 157
Msa0712080 MtrunA17_Chr1g0183641 28.899 436 236 11 48 480 115 479 1.01e-41 155
Msa0712080 MtrunA17_Chr2g0328381 25.792 442 262 9 41 477 260 640 2.84e-41 156
Msa0712080 MtrunA17_Chr7g0245601 41.146 192 108 2 60 249 442 630 1.86e-39 152
Msa0712080 MtrunA17_Chr7g0245601 38.255 149 87 3 333 478 646 792 2.38e-23 103
Msa0712080 MtrunA17_Chr4g0039661 26.147 436 242 9 53 478 190 555 3.15e-38 146
Msa0712080 MtrunA17_Chr2g0294471 27.056 462 256 12 33 478 180 576 1.10e-37 145
Msa0712080 MtrunA17_Chr4g0057291 33.023 215 140 1 49 259 285 499 1.56e-37 145
Msa0712080 MtrunA17_Chr4g0057291 32.692 156 98 5 328 477 507 661 2.19e-19 91.3
Msa0712080 MtrunA17_Chr3g0110971 34.685 222 131 3 44 260 207 419 2.21e-36 142
Msa0712080 MtrunA17_Chr3g0110971 37.805 164 89 3 328 478 424 587 8.11e-30 122
Msa0712080 MtrunA17_Chr8g0376381 34.375 224 128 5 44 260 157 368 1.43e-33 133
Msa0712080 MtrunA17_Chr8g0376381 35.526 152 95 2 328 478 373 522 9.26e-29 119
Msa0712080 MtrunA17_Chr2g0328401 26.893 383 209 8 56 431 290 608 6.88e-33 132
Msa0712080 MtrunA17_Chr2g0319091 35.238 210 129 2 53 256 209 417 8.99e-32 128
Msa0712080 MtrunA17_Chr2g0319091 41.611 149 86 1 329 477 431 578 2.28e-29 121
Msa0712080 MtrunA17_Chr5g0445331 28.972 214 144 3 53 258 158 371 2.82e-29 120
Msa0712080 MtrunA17_Chr5g0445331 36.879 141 88 1 338 478 393 532 5.25e-24 105
Msa0712080 MtrunA17_Chr4g0038761 32.124 193 128 2 60 249 88 280 1.07e-28 118
Msa0712080 MtrunA17_Chr4g0038761 39.456 147 87 2 332 478 298 442 3.19e-21 96.3
Msa0712080 MtrunA17_Chr2g0328371 25.597 293 156 6 139 428 13 246 3.36e-28 112
Msa0712080 MtrunA17_Chr2g0328361 23.409 440 248 10 42 477 260 614 1.29e-27 116
Msa0712080 MtrunA17_Chr3g0101141 27.645 293 187 7 53 329 172 455 7.82e-27 113
Msa0712080 MtrunA17_Chr3g0101141 36.170 141 89 1 338 478 403 542 2.49e-25 108
Msa0712080 MtrunA17_Chr2g0328391 29.048 210 142 2 56 258 299 508 1.47e-26 113
Msa0712080 MtrunA17_Chr2g0328391 28.188 149 107 0 329 477 520 668 1.90e-18 88.6
Msa0712080 MtrunA17_Chr7g0270031 25.877 456 256 13 36 478 168 554 7.53e-26 110
Msa0712080 MtrunA17_Chr5g0401421 24.658 438 287 11 56 477 35 445 9.88e-26 109
Msa0712080 MtrunA17_Chr5g0424131 26.350 463 245 15 41 477 106 498 1.00e-25 110
Msa0712080 MtrunA17_Chr4g0053901 23.729 472 285 12 38 477 39 467 2.28e-25 108
Msa0712080 MtrunA17_Chr2g0328411 31.100 209 134 2 56 258 289 493 5.24e-25 108
Msa0712080 MtrunA17_Chr2g0328411 30.201 149 104 0 329 477 505 653 8.18e-18 86.7
Msa0712080 MtrunA17_Chr2g0328431 31.100 209 134 2 56 258 289 493 1.38e-24 107
Msa0712080 MtrunA17_Chr2g0328431 29.530 149 105 0 329 477 505 653 1.90e-16 82.0
Msa0712080 MtrunA17_Chr7g0236851 27.586 348 176 10 141 477 374 656 8.32e-24 105
Msa0712080 MtrunA17_Chr5g0401131 30.769 221 137 5 50 258 108 324 8.60e-24 103
Msa0712080 MtrunA17_Chr5g0401131 29.032 155 103 4 329 478 338 490 3.98e-11 65.1
Msa0712080 MtrunA17_Chr2g0294461 34.615 156 93 4 328 478 434 585 2.90e-22 100
Msa0712080 MtrunA17_Chr2g0294461 29.032 248 160 6 33 264 186 433 2.99e-20 94.0
Msa0712080 MtrunA17_Chr8g0383981 24.598 435 243 16 53 477 136 495 6.06e-22 98.6
Msa0712080 MtrunA17_Chr2g0329591 26.512 215 148 4 47 252 65 278 1.24e-20 94.4
Msa0712080 MtrunA17_Chr6g0468561 23.570 437 249 12 57 478 296 662 7.76e-20 92.8
Msa0712080 MtrunA17_Chr1g0200401 27.839 273 159 9 47 288 71 336 1.06e-19 91.7
Msa0712080 MtrunA17_Chr1g0200401 29.143 175 106 4 323 479 286 460 6.09e-19 89.4
Msa0712080 MtrunA17_Chr4g0012071 22.664 428 254 12 57 479 197 552 6.75e-19 89.7
Msa0712080 MtrunA17_Chr3g0114841 28.163 245 136 8 41 255 105 339 2.51e-18 87.8
Msa0712080 MtrunA17_Chr3g0114841 31.707 164 98 5 321 477 343 499 8.17e-14 73.6
Msa0712080 MtrunA17_Chr1g0194621 29.570 186 117 5 297 478 343 518 5.96e-18 86.7
Msa0712080 MtrunA17_Chr1g0194621 29.388 245 154 9 36 263 124 366 1.86e-13 72.4
Msa0712080 MtrunA17_Chr3g0087711 52.542 59 28 0 207 265 1 59 8.93e-14 65.9
Msa0712080 MtrunA17_Chr2g0323111 26.846 149 107 2 329 477 159 305 1.05e-13 72.0
Msa0712080 MtrunA17_Chr7g0230731 28.205 195 134 2 33 223 349 541 3.01e-13 72.4
Msa0712080 MtrunA17_Chr7g0230771 30.303 165 113 1 33 197 352 514 5.33e-13 71.6
Msa0712080 MtrunA17_Chr8g0344101 23.409 440 245 16 50 466 217 587 8.75e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0712080 AT1G50420.1 65.914 487 155 7 1 481 1 482 0.0 650
Msa0712080 AT3G54220.1 33.258 442 218 10 45 480 282 652 1.11e-60 210
Msa0712080 AT1G50600.3 29.476 458 251 10 31 478 131 526 6.69e-55 192
Msa0712080 AT1G50600.1 29.476 458 251 10 31 478 202 597 2.24e-54 192
Msa0712080 AT1G50600.2 29.476 458 251 10 31 478 206 601 2.25e-54 192
Msa0712080 AT1G21450.1 29.002 431 238 5 55 478 224 593 2.89e-54 192
Msa0712080 AT4G17230.1 26.622 447 259 7 39 478 141 525 7.53e-47 170
Msa0712080 AT4G17230.2 26.622 447 259 7 39 478 141 525 7.53e-47 170
Msa0712080 AT1G07520.2 24.099 444 268 6 45 477 143 528 8.17e-44 162
Msa0712080 AT1G07520.4 24.099 444 268 6 45 477 143 528 8.17e-44 162
Msa0712080 AT1G07520.3 24.099 444 268 6 45 477 308 693 4.47e-43 162
Msa0712080 AT1G07520.1 24.099 444 268 6 45 477 307 692 4.61e-43 162
Msa0712080 AT3G46600.2 26.097 433 253 6 55 481 3 374 3.49e-41 151
Msa0712080 AT1G07530.1 25.408 429 253 7 56 477 396 764 1.78e-40 155
Msa0712080 AT5G59450.1 25.688 436 253 9 53 478 224 598 3.07e-40 153
Msa0712080 AT3G46600.3 26.097 433 253 6 55 481 179 550 3.80e-40 152
Msa0712080 AT3G46600.1 26.097 433 253 6 55 481 211 582 6.98e-40 152
Msa0712080 AT2G29065.1 25.513 439 247 10 56 477 252 627 8.57e-39 149
Msa0712080 AT1G66350.1 35.616 219 132 4 44 260 143 354 2.84e-36 140
Msa0712080 AT1G66350.1 37.179 156 93 2 327 481 358 509 4.47e-31 126
Msa0712080 AT1G14920.1 36.161 224 129 4 44 260 160 376 1.08e-34 136
Msa0712080 AT1G14920.1 34.868 152 95 2 328 478 381 529 9.32e-27 113
Msa0712080 AT2G01570.1 35.683 227 126 5 44 260 212 428 1.87e-34 136
Msa0712080 AT2G01570.1 37.500 152 91 3 328 478 433 581 5.01e-27 114
Msa0712080 AT5G17490.1 34.404 218 132 4 47 260 151 361 2.51e-34 135
Msa0712080 AT5G17490.1 38.562 153 92 2 327 478 365 516 2.14e-27 115
Msa0712080 AT5G48150.1 28.975 283 189 4 57 329 123 403 7.01e-34 134
Msa0712080 AT5G48150.1 36.709 158 99 1 321 478 334 490 9.63e-27 113
Msa0712080 AT5G48150.4 28.975 283 189 4 57 329 123 403 7.01e-34 134
Msa0712080 AT5G48150.4 36.709 158 99 1 321 478 334 490 9.63e-27 113
Msa0712080 AT5G48150.2 28.975 283 189 4 57 329 123 403 7.01e-34 134
Msa0712080 AT5G48150.2 36.709 158 99 1 321 478 334 490 9.63e-27 113
Msa0712080 AT5G48150.3 28.975 283 189 4 57 329 123 403 7.01e-34 134
Msa0712080 AT5G48150.3 36.709 158 99 1 321 478 334 490 9.63e-27 113
Msa0712080 AT5G66770.1 27.397 438 236 13 53 478 217 584 4.10e-33 132
Msa0712080 AT3G03450.1 32.287 223 142 4 44 260 171 390 1.25e-32 130
Msa0712080 AT3G03450.1 39.355 155 92 2 325 478 392 545 2.42e-31 127
Msa0712080 AT1G63100.1 32.110 218 139 3 48 259 244 458 2.32e-32 130
Msa0712080 AT1G63100.1 36.196 163 91 3 328 477 466 628 9.66e-25 108
Msa0712080 AT1G63100.2 32.110 218 139 3 48 259 269 483 2.89e-32 130
Msa0712080 AT1G63100.2 36.196 163 91 3 328 477 491 653 1.29e-24 107
Msa0712080 AT5G41920.1 32.338 201 132 3 53 249 40 240 1.55e-31 125
Msa0712080 AT5G41920.1 36.774 155 91 3 327 480 254 402 1.94e-20 93.6
Msa0712080 AT2G37650.1 24.186 430 256 7 56 478 347 713 3.67e-31 127
Msa0712080 AT2G37650.2 24.186 430 256 7 56 478 335 701 5.11e-31 127
Msa0712080 AT2G04890.1 33.491 212 136 3 56 267 53 259 9.64e-31 123
Msa0712080 AT2G04890.1 40.000 150 89 1 329 478 265 413 9.14e-28 115
Msa0712080 AT5G52510.1 25.397 441 233 11 61 478 273 640 2.88e-30 124
Msa0712080 AT1G55580.1 36.184 152 96 1 328 478 294 445 3.81e-28 116
Msa0712080 AT1G55580.1 24.375 320 197 7 52 329 40 356 7.76e-15 77.0
Msa0712080 AT3G49950.1 24.831 443 255 12 52 477 26 407 5.31e-25 107
Msa0712080 AT2G29060.1 29.245 212 141 3 56 259 321 531 3.42e-24 106
Msa0712080 AT2G29060.1 27.273 154 103 3 329 477 542 691 2.11e-15 79.3
Msa0712080 AT2G29060.2 29.245 212 141 3 56 259 284 494 3.87e-24 106
Msa0712080 AT2G29060.2 27.273 154 103 3 329 477 505 654 1.71e-15 79.7
Msa0712080 AT4G37650.1 26.432 227 135 4 56 258 146 364 1.72e-22 100
Msa0712080 AT4G37650.1 26.415 159 107 3 329 478 372 529 6.45e-11 65.1
Msa0712080 AT4G08250.1 29.596 223 139 7 47 255 98 316 3.62e-20 93.6
Msa0712080 AT3G50650.1 30.876 217 133 4 58 267 177 383 6.22e-20 93.2
Msa0712080 AT3G50650.1 28.859 149 99 3 337 478 394 542 1.80e-13 73.2

Find 92 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATTCTTGTGGAATTTA+AGG 0.089377 5_1:+3924044 None:intergenic
TATGCTTTCTGAAGAAATTA+TGG 0.230947 5_1:-3924022 Msa0712080:CDS
TTTGAGTTTCTTGACATAAT+AGG 0.254589 5_1:+3923574 None:intergenic
TGCAGCATTGTTTGATTGTT+TGG 0.259936 5_1:-3923284 Msa0712080:CDS
CAGCTTCTTCAGAAAGCTTA+TGG 0.264058 5_1:+3923764 None:intergenic
TCATCAGCAGAAAGAGGTTT+TGG 0.271986 5_1:-3923797 Msa0712080:CDS
AACATACCATAATAGCTTAA+AGG 0.277960 5_1:+3923094 None:intergenic
ACAATGCTGCATAAGAATAT+AGG 0.281076 5_1:+3923296 None:intergenic
TCAAGCTATTGTTGAATCTA+TGG 0.285430 5_1:-3923941 Msa0712080:CDS
TGCTAAGAACAGGGTTGAAT+TGG 0.312189 5_1:+3923722 None:intergenic
CTCAAATGAGGAGGACCTTC+AGG 0.312197 5_1:+3923832 None:intergenic
TTGTGGAATTTAAGGCTCTA+TGG 0.321651 5_1:+3924052 None:intergenic
ATCTATGGAAGGTGAGAAAA+TGG 0.335503 5_1:-3923926 Msa0712080:CDS
TCTGCAGTTACATTCCCTTT+TGG 0.339325 5_1:-3923632 Msa0712080:CDS
AACATCCCTAGAGAGATTAA+AGG 0.354098 5_1:-3923245 Msa0712080:CDS
AAGCTATTATGGTATGTTGC+AGG 0.357915 5_1:-3923089 Msa0712080:CDS
AATCACCTAATGATGTGTTT+TGG 0.364016 5_1:+3923518 None:intergenic
TAGTAACTTGCTGGCAAGAT+AGG 0.366004 5_1:-3923003 Msa0712080:CDS
CAATGCTGCATAAGAATATA+GGG 0.366018 5_1:+3923297 None:intergenic
GACAAACTTCGTGTGAAAAC+CGG 0.371883 5_1:-3923679 Msa0712080:CDS
AATGTGCCTTTAAGCTATTA+TGG 0.377946 5_1:-3923100 Msa0712080:CDS
AGACTTGATTCGTGTGGATT+TGG 0.381293 5_1:-3923124 Msa0712080:CDS
ATGAACCAAAACACATCATT+AGG 0.381360 5_1:-3923523 Msa0712080:CDS
TGTGCAAATCATGTAGCTTC+TGG 0.411195 5_1:-3924210 Msa0712080:CDS
TCACCTAGCATAGGAGGAAT+AGG 0.416008 5_1:-3924309 Msa0712080:CDS
TATAGAATGAGAGAAGAAAA+TGG 0.416830 5_1:-3923031 Msa0712080:CDS
CTGATAGGATACTTAAAACT+TGG 0.427400 5_1:-3924083 Msa0712080:CDS
AGAAGGTTTCTACAGAGTTA+TGG 0.432910 5_1:-3923064 Msa0712080:CDS
TCACTGAAGCACTTGCTGAT+AGG 0.433040 5_1:-3924098 Msa0712080:CDS
ATGGTTGTGTAGTAACTTGC+TGG 0.448692 5_1:-3923012 Msa0712080:CDS
TCGGTTACAACCATGACTTT+TGG 0.460163 5_1:+3923370 None:intergenic
TCACAACGGTTCAACATTGA+TGG 0.461983 5_1:-3923335 Msa0712080:CDS
TTGCACAAGTGATTAACAAA+TGG 0.462673 5_1:+3924226 None:intergenic
CAACAACAGCTTGGAGAGCT+AGG 0.464849 5_1:-3922970 Msa0712080:CDS
TCTCAACCTTTAATCTCTCT+AGG 0.466126 5_1:+3923239 None:intergenic
ATTCATCATCCAAGGCCAAA+AGG 0.470579 5_1:+3923617 None:intergenic
GATGATGTTGAATCGGGACT+TGG 0.470973 5_1:+3923463 None:intergenic
GTTGTGATTCGAGTCCTGTT+CGG 0.477667 5_1:+3923351 None:intergenic
GAATCTATGTTACAAGAAGA+AGG 0.480629 5_1:-3924384 Msa0712080:CDS
AGAATTGAAATCTGAGGAAA+GGG 0.483022 5_1:-3924262 Msa0712080:CDS
ATATATGCCACCTTCAAGAA+AGG 0.483743 5_1:+3923973 None:intergenic
ATTATGTCAAGAAACTCAAA+TGG 0.483850 5_1:-3923571 Msa0712080:CDS
CCTCCTCATTTGAGAATCAC+AGG 0.490720 5_1:-3923823 Msa0712080:CDS
AAGGTTGAGAAGATGCTGTT+TGG 0.498109 5_1:-3923226 Msa0712080:CDS
AGAAAGCATAATAATTCTTG+TGG 0.500494 5_1:+3924035 None:intergenic
CTCTGCATAGTGTCTCCATC+AGG 0.502156 5_1:+3924135 None:intergenic
AGTCATGGTTGTAACCGAAC+AGG 0.503090 5_1:-3923365 Msa0712080:CDS
CGACGATGATGATGTTGAAT+CGG 0.503259 5_1:+3923456 None:intergenic
GCTAGGTGAAACTGACATCA+TGG 0.505670 5_1:+3924323 None:intergenic
GAGAATTGAAATCTGAGGAA+AGG 0.506938 5_1:-3924263 Msa0712080:CDS
TCTCTACTAAGCCATGGATA+AGG 0.507017 5_1:+3924282 None:intergenic
AGGATACTTAAAACTTGGCC+TGG 0.515401 5_1:-3924078 Msa0712080:CDS
CTACAGAGTTATGGTTGTGA+GGG 0.516522 5_1:-3923055 Msa0712080:CDS
TCACAGCTTGCAACTCCTGA+TGG 0.516747 5_1:-3924150 Msa0712080:CDS
TTCATCATCCAAGGCCAAAA+GGG 0.519127 5_1:+3923618 None:intergenic
TTCAATTCTCTACTAAGCCA+TGG 0.520245 5_1:+3924276 None:intergenic
CTCAACCTTTAATCTCTCTA+GGG 0.522051 5_1:+3923240 None:intergenic
TATATGCCACCTTCAAGAAA+GGG 0.525767 5_1:+3923974 None:intergenic
TTGTGAAGGAGCTGAAAGAA+AGG 0.532875 5_1:-3923179 Msa0712080:CDS
AAAAGAGCAATCCATTGTGC+AGG 0.535750 5_1:+3923874 None:intergenic
AGGGATTCATCAGCAGAAAG+AGG 0.542783 5_1:-3923803 Msa0712080:CDS
TTCATCTGCTTCAATGAATG+TGG 0.545313 5_1:-3923425 Msa0712080:CDS
TTTAAGGCTCTATGGAGTCC+AGG 0.546774 5_1:+3924060 None:intergenic
ACTAATTGCAAGCGCCTCGC+CGG 0.552940 5_1:+3923660 None:intergenic
GACGATGATGATGTTGAATC+GGG 0.555408 5_1:+3923457 None:intergenic
ATGGTATGTTGCAGGCAAGA+AGG 0.557823 5_1:-3923081 Msa0712080:CDS
GATCCTATTCCTCCTATGCT+AGG 0.562234 5_1:+3924306 None:intergenic
TCAGTTTCACCTAGCATAGG+AGG 0.562988 5_1:-3924315 Msa0712080:CDS
AGAACAGGGTTGAATTGGAA+TGG 0.565131 5_1:+3923727 None:intergenic
TCTACAGAGTTATGGTTGTG+AGG 0.567967 5_1:-3923056 Msa0712080:CDS
ATTGAAGCAGATGAAGATGC+TGG 0.572949 5_1:+3923433 None:intergenic
GAGTTTGTCACCAAAAGTCA+TGG 0.575658 5_1:-3923380 Msa0712080:CDS
AAGAACATAATTGCTTGTGA+AGG 0.580873 5_1:-3923193 Msa0712080:CDS
ATCCCTGTGATTCTCAAATG+AGG 0.584689 5_1:+3923820 None:intergenic
TGAGGATGATTCATCATCCA+AGG 0.589137 5_1:+3923609 None:intergenic
AATCTATGTTACAAGAAGAA+GGG 0.598643 5_1:-3924383 Msa0712080:CDS
GAATAGGATCACCTTATCCA+TGG 0.599511 5_1:-3924293 Msa0712080:CDS
GCTATTGTTGAATCTATGGA+AGG 0.607832 5_1:-3923937 Msa0712080:CDS
TGAGAAGATGCTGTTTGGTG+AGG 0.611876 5_1:-3923221 Msa0712080:CDS
ATGTCAGTTTCACCTAGCAT+AGG 0.614550 5_1:-3924318 Msa0712080:CDS
ATCATGGAAAATAACTGTAG+AGG 0.617197 5_1:+3924339 None:intergenic
CTCCTCATTTGAGAATCACA+GGG 0.617281 5_1:-3923822 Msa0712080:CDS
TTTCTAGCTTGCTAAGAACA+GGG 0.622441 5_1:+3923713 None:intergenic
ACGGTTCAACATTGATGGAG+AGG 0.639461 5_1:-3923330 Msa0712080:CDS
TAGTAGAGAATTGAAATCTG+AGG 0.644490 5_1:-3924268 Msa0712080:CDS
TGGATGATGAATCATCCTCA+AGG 0.648643 5_1:-3923606 Msa0712080:CDS
ATGCTGCTGAACCTGCACAA+TGG 0.650823 5_1:-3923885 Msa0712080:CDS
GAATTGAAATCTGAGGAAAG+GGG 0.651416 5_1:-3924261 Msa0712080:CDS
TTTATGAGACTTGATTCGTG+TGG 0.658284 5_1:-3923130 Msa0712080:CDS
CCTGTGATTCTCAAATGAGG+AGG 0.663636 5_1:+3923823 None:intergenic
ACTTCGTGTGAAAACCGGCG+AGG 0.733150 5_1:-3923674 Msa0712080:CDS
GAACAGGACTCGAATCACAA+CGG 0.767714 5_1:-3923349 Msa0712080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTCTTGTGGAATTTA+AGG + chr5_1:3923310-3923329 None:intergenic 20.0%
!! TGATTTACTTGAAAAAGATA+TGG - chr5_1:3923851-3923870 Msa0712080:CDS 20.0%
!! AATAATTCTTGTGGAATTTA+AGG + chr5_1:3923310-3923329 None:intergenic 20.0%
!! TGATTTACTTGAAAAAGATA+TGG - chr5_1:3923851-3923870 Msa0712080:CDS 20.0%
! AATCTATGTTACAAGAAGAA+GGG - chr5_1:3922968-3922987 Msa0712080:CDS 25.0%
!! AGAAAGCATAATAATTCTTG+TGG + chr5_1:3923319-3923338 None:intergenic 25.0%
!! TATGCTTTCTGAAGAAATTA+TGG - chr5_1:3923329-3923348 Msa0712080:CDS 25.0%
!! TTTGAGTTTCTTGACATAAT+AGG + chr5_1:3923780-3923799 None:intergenic 25.0%
! ATTATGTCAAGAAACTCAAA+TGG - chr5_1:3923780-3923799 Msa0712080:CDS 25.0%
! CTTGAAAAAGATATGGTTAA+TGG - chr5_1:3923858-3923877 Msa0712080:CDS 25.0%
! GACATGAAAAACTTGATAAA+TGG - chr5_1:3924198-3924217 Msa0712080:CDS 25.0%
! AACATACCATAATAGCTTAA+AGG + chr5_1:3924260-3924279 None:intergenic 25.0%
! TATAGAATGAGAGAAGAAAA+TGG - chr5_1:3924320-3924339 Msa0712080:CDS 25.0%
! AATCTATGTTACAAGAAGAA+GGG - chr5_1:3922968-3922987 Msa0712080:CDS 25.0%
!! AGAAAGCATAATAATTCTTG+TGG + chr5_1:3923319-3923338 None:intergenic 25.0%
!! TATGCTTTCTGAAGAAATTA+TGG - chr5_1:3923329-3923348 Msa0712080:CDS 25.0%
!! TTTGAGTTTCTTGACATAAT+AGG + chr5_1:3923780-3923799 None:intergenic 25.0%
! ATTATGTCAAGAAACTCAAA+TGG - chr5_1:3923780-3923799 Msa0712080:CDS 25.0%
! CTTGAAAAAGATATGGTTAA+TGG - chr5_1:3923858-3923877 Msa0712080:CDS 25.0%
! GACATGAAAAACTTGATAAA+TGG - chr5_1:3924198-3924217 Msa0712080:CDS 25.0%
! AACATACCATAATAGCTTAA+AGG + chr5_1:3924260-3924279 None:intergenic 25.0%
! TATAGAATGAGAGAAGAAAA+TGG - chr5_1:3924320-3924339 Msa0712080:CDS 25.0%
GAATCTATGTTACAAGAAGA+AGG - chr5_1:3922967-3922986 Msa0712080:CDS 30.0%
ATCATGGAAAATAACTGTAG+AGG + chr5_1:3923015-3923034 None:intergenic 30.0%
TAGTAGAGAATTGAAATCTG+AGG - chr5_1:3923083-3923102 Msa0712080:CDS 30.0%
AGAATTGAAATCTGAGGAAA+GGG - chr5_1:3923089-3923108 Msa0712080:CDS 30.0%
TTGCACAAGTGATTAACAAA+TGG + chr5_1:3923128-3923147 None:intergenic 30.0%
CTGATAGGATACTTAAAACT+TGG - chr5_1:3923268-3923287 Msa0712080:CDS 30.0%
TCAAGCTATTGTTGAATCTA+TGG - chr5_1:3923410-3923429 Msa0712080:CDS 30.0%
ATGAACCAAAACACATCATT+AGG - chr5_1:3923828-3923847 Msa0712080:CDS 30.0%
! AATCACCTAATGATGTGTTT+TGG + chr5_1:3923836-3923855 None:intergenic 30.0%
! AGAGTTTTCTCAATGCTTTA+TGG - chr5_1:3923949-3923968 Msa0712080:CDS 30.0%
CAATGCTGCATAAGAATATA+GGG + chr5_1:3924057-3924076 None:intergenic 30.0%
ACAATGCTGCATAAGAATAT+AGG + chr5_1:3924058-3924077 None:intergenic 30.0%
AAGAACATAATTGCTTGTGA+AGG - chr5_1:3924158-3924177 Msa0712080:CDS 30.0%
AATGTGCCTTTAAGCTATTA+TGG - chr5_1:3924251-3924270 Msa0712080:CDS 30.0%
GAATCTATGTTACAAGAAGA+AGG - chr5_1:3922967-3922986 Msa0712080:CDS 30.0%
ATCATGGAAAATAACTGTAG+AGG + chr5_1:3923015-3923034 None:intergenic 30.0%
TAGTAGAGAATTGAAATCTG+AGG - chr5_1:3923083-3923102 Msa0712080:CDS 30.0%
AGAATTGAAATCTGAGGAAA+GGG - chr5_1:3923089-3923108 Msa0712080:CDS 30.0%
TTGCACAAGTGATTAACAAA+TGG + chr5_1:3923128-3923147 None:intergenic 30.0%
CTGATAGGATACTTAAAACT+TGG - chr5_1:3923268-3923287 Msa0712080:CDS 30.0%
TCAAGCTATTGTTGAATCTA+TGG - chr5_1:3923410-3923429 Msa0712080:CDS 30.0%
ATGAACCAAAACACATCATT+AGG - chr5_1:3923828-3923847 Msa0712080:CDS 30.0%
! AATCACCTAATGATGTGTTT+TGG + chr5_1:3923836-3923855 None:intergenic 30.0%
! AGAGTTTTCTCAATGCTTTA+TGG - chr5_1:3923949-3923968 Msa0712080:CDS 30.0%
CAATGCTGCATAAGAATATA+GGG + chr5_1:3924057-3924076 None:intergenic 30.0%
ACAATGCTGCATAAGAATAT+AGG + chr5_1:3924058-3924077 None:intergenic 30.0%
AAGAACATAATTGCTTGTGA+AGG - chr5_1:3924158-3924177 Msa0712080:CDS 30.0%
AATGTGCCTTTAAGCTATTA+TGG - chr5_1:3924251-3924270 Msa0712080:CDS 30.0%
TTCAATTCTCTACTAAGCCA+TGG + chr5_1:3923078-3923097 None:intergenic 35.0%
GAGAATTGAAATCTGAGGAA+AGG - chr5_1:3923088-3923107 Msa0712080:CDS 35.0%
GAATTGAAATCTGAGGAAAG+GGG - chr5_1:3923090-3923109 Msa0712080:CDS 35.0%
! TTGTGGAATTTAAGGCTCTA+TGG + chr5_1:3923302-3923321 None:intergenic 35.0%
TATATGCCACCTTCAAGAAA+GGG + chr5_1:3923380-3923399 None:intergenic 35.0%
ATATATGCCACCTTCAAGAA+AGG + chr5_1:3923381-3923400 None:intergenic 35.0%
GCTATTGTTGAATCTATGGA+AGG - chr5_1:3923414-3923433 Msa0712080:CDS 35.0%
ATCTATGGAAGGTGAGAAAA+TGG - chr5_1:3923425-3923444 Msa0712080:CDS 35.0%
!!! AAAGAGGTTTTGGAGCAAAT+GGG - chr5_1:3923564-3923583 Msa0712080:CDS 35.0%
!! TTTCTAGCTTGCTAAGAACA+GGG + chr5_1:3923641-3923660 None:intergenic 35.0%
!!! TTTTCTAGCTTGCTAAGAAC+AGG + chr5_1:3923642-3923661 None:intergenic 35.0%
! AATAGGAGTTTTTCTCCTTG+AGG + chr5_1:3923763-3923782 None:intergenic 35.0%
!!! TGTGTTTTGGTTCATAAGCA+TGG + chr5_1:3923823-3923842 None:intergenic 35.0%
TTCATCTGCTTCAATGAATG+TGG - chr5_1:3923926-3923945 Msa0712080:CDS 35.0%
TGCAGCATTGTTTGATTGTT+TGG - chr5_1:3924067-3924086 Msa0712080:CDS 35.0%
AACATCCCTAGAGAGATTAA+AGG - chr5_1:3924106-3924125 Msa0712080:CDS 35.0%
CTCAACCTTTAATCTCTCTA+GGG + chr5_1:3924114-3924133 None:intergenic 35.0%
TCTCAACCTTTAATCTCTCT+AGG + chr5_1:3924115-3924134 None:intergenic 35.0%
! TTTATGAGACTTGATTCGTG+TGG - chr5_1:3924221-3924240 Msa0712080:CDS 35.0%
AAGCTATTATGGTATGTTGC+AGG - chr5_1:3924262-3924281 Msa0712080:CDS 35.0%
AGAAGGTTTCTACAGAGTTA+TGG - chr5_1:3924287-3924306 Msa0712080:CDS 35.0%
!!! CTTTGTTTTCAACAACAGCT+TGG - chr5_1:3924372-3924391 Msa0712080:CDS 35.0%
TTCAATTCTCTACTAAGCCA+TGG + chr5_1:3923078-3923097 None:intergenic 35.0%
GAGAATTGAAATCTGAGGAA+AGG - chr5_1:3923088-3923107 Msa0712080:CDS 35.0%
GAATTGAAATCTGAGGAAAG+GGG - chr5_1:3923090-3923109 Msa0712080:CDS 35.0%
! TTGTGGAATTTAAGGCTCTA+TGG + chr5_1:3923302-3923321 None:intergenic 35.0%
TATATGCCACCTTCAAGAAA+GGG + chr5_1:3923380-3923399 None:intergenic 35.0%
ATATATGCCACCTTCAAGAA+AGG + chr5_1:3923381-3923400 None:intergenic 35.0%
GCTATTGTTGAATCTATGGA+AGG - chr5_1:3923414-3923433 Msa0712080:CDS 35.0%
ATCTATGGAAGGTGAGAAAA+TGG - chr5_1:3923425-3923444 Msa0712080:CDS 35.0%
!!! AAAGAGGTTTTGGAGCAAAT+GGG - chr5_1:3923564-3923583 Msa0712080:CDS 35.0%
!! TTTCTAGCTTGCTAAGAACA+GGG + chr5_1:3923641-3923660 None:intergenic 35.0%
!!! TTTTCTAGCTTGCTAAGAAC+AGG + chr5_1:3923642-3923661 None:intergenic 35.0%
! AATAGGAGTTTTTCTCCTTG+AGG + chr5_1:3923763-3923782 None:intergenic 35.0%
!!! TGTGTTTTGGTTCATAAGCA+TGG + chr5_1:3923823-3923842 None:intergenic 35.0%
TTCATCTGCTTCAATGAATG+TGG - chr5_1:3923926-3923945 Msa0712080:CDS 35.0%
TGCAGCATTGTTTGATTGTT+TGG - chr5_1:3924067-3924086 Msa0712080:CDS 35.0%
AACATCCCTAGAGAGATTAA+AGG - chr5_1:3924106-3924125 Msa0712080:CDS 35.0%
CTCAACCTTTAATCTCTCTA+GGG + chr5_1:3924114-3924133 None:intergenic 35.0%
TCTCAACCTTTAATCTCTCT+AGG + chr5_1:3924115-3924134 None:intergenic 35.0%
! TTTATGAGACTTGATTCGTG+TGG - chr5_1:3924221-3924240 Msa0712080:CDS 35.0%
AAGCTATTATGGTATGTTGC+AGG - chr5_1:3924262-3924281 Msa0712080:CDS 35.0%
AGAAGGTTTCTACAGAGTTA+TGG - chr5_1:3924287-3924306 Msa0712080:CDS 35.0%
!!! CTTTGTTTTCAACAACAGCT+TGG - chr5_1:3924372-3924391 Msa0712080:CDS 35.0%
ATGTCAGTTTCACCTAGCAT+AGG - chr5_1:3923033-3923052 Msa0712080:CDS 40.0%
GAATAGGATCACCTTATCCA+TGG - chr5_1:3923058-3923077 Msa0712080:CDS 40.0%
TCTCTACTAAGCCATGGATA+AGG + chr5_1:3923072-3923091 None:intergenic 40.0%
TGTGCAAATCATGTAGCTTC+TGG - chr5_1:3923141-3923160 Msa0712080:CDS 40.0%
AGGATACTTAAAACTTGGCC+TGG - chr5_1:3923273-3923292 Msa0712080:CDS 40.0%
! TGAGCTTTTCCCTTTCTTGA+AGG - chr5_1:3923368-3923387 Msa0712080:CDS 40.0%
AAAAGAGCAATCCATTGTGC+AGG + chr5_1:3923480-3923499 None:intergenic 40.0%
CTCCTCATTTGAGAATCACA+GGG - chr5_1:3923529-3923548 Msa0712080:CDS 40.0%
ATCCCTGTGATTCTCAAATG+AGG + chr5_1:3923534-3923553 None:intergenic 40.0%
! TCATCAGCAGAAAGAGGTTT+TGG - chr5_1:3923554-3923573 Msa0712080:CDS 40.0%
!!! GAAAGAGGTTTTGGAGCAAA+TGG - chr5_1:3923563-3923582 Msa0712080:CDS 40.0%
CAGCTTCTTCAGAAAGCTTA+TGG + chr5_1:3923590-3923609 None:intergenic 40.0%
AGAACAGGGTTGAATTGGAA+TGG + chr5_1:3923627-3923646 None:intergenic 40.0%
TGCTAAGAACAGGGTTGAAT+TGG + chr5_1:3923632-3923651 None:intergenic 40.0%
GACAAACTTCGTGTGAAAAC+CGG - chr5_1:3923672-3923691 Msa0712080:CDS 40.0%
! TCTGCAGTTACATTCCCTTT+TGG - chr5_1:3923719-3923738 Msa0712080:CDS 40.0%
TTCATCATCCAAGGCCAAAA+GGG + chr5_1:3923736-3923755 None:intergenic 40.0%
ATTCATCATCCAAGGCCAAA+AGG + chr5_1:3923737-3923756 None:intergenic 40.0%
TGAGGATGATTCATCATCCA+AGG + chr5_1:3923745-3923764 None:intergenic 40.0%
TGGATGATGAATCATCCTCA+AGG - chr5_1:3923745-3923764 Msa0712080:CDS 40.0%
! TCATAAGCATGGCTTTTTGC+AGG + chr5_1:3923812-3923831 None:intergenic 40.0%
! GACGATGATGATGTTGAATC+GGG + chr5_1:3923897-3923916 None:intergenic 40.0%
! CGACGATGATGATGTTGAAT+CGG + chr5_1:3923898-3923917 None:intergenic 40.0%
ATTGAAGCAGATGAAGATGC+TGG + chr5_1:3923921-3923940 None:intergenic 40.0%
GAGTTTGTCACCAAAAGTCA+TGG - chr5_1:3923971-3923990 Msa0712080:CDS 40.0%
! TCGGTTACAACCATGACTTT+TGG + chr5_1:3923984-3924003 None:intergenic 40.0%
TCACAACGGTTCAACATTGA+TGG - chr5_1:3924016-3924035 Msa0712080:CDS 40.0%
AAGGTTGAGAAGATGCTGTT+TGG - chr5_1:3924125-3924144 Msa0712080:CDS 40.0%
TTGTGAAGGAGCTGAAAGAA+AGG - chr5_1:3924172-3924191 Msa0712080:CDS 40.0%
! AGACTTGATTCGTGTGGATT+TGG - chr5_1:3924227-3924246 Msa0712080:CDS 40.0%
TCTACAGAGTTATGGTTGTG+AGG - chr5_1:3924295-3924314 Msa0712080:CDS 40.0%
CTACAGAGTTATGGTTGTGA+GGG - chr5_1:3924296-3924315 Msa0712080:CDS 40.0%
! ATGGTTGTGTAGTAACTTGC+TGG - chr5_1:3924339-3924358 Msa0712080:CDS 40.0%
!! TAGTAACTTGCTGGCAAGAT+AGG - chr5_1:3924348-3924367 Msa0712080:CDS 40.0%
ATGTCAGTTTCACCTAGCAT+AGG - chr5_1:3923033-3923052 Msa0712080:CDS 40.0%
GAATAGGATCACCTTATCCA+TGG - chr5_1:3923058-3923077 Msa0712080:CDS 40.0%
TCTCTACTAAGCCATGGATA+AGG + chr5_1:3923072-3923091 None:intergenic 40.0%
TGTGCAAATCATGTAGCTTC+TGG - chr5_1:3923141-3923160 Msa0712080:CDS 40.0%
AGGATACTTAAAACTTGGCC+TGG - chr5_1:3923273-3923292 Msa0712080:CDS 40.0%
! TGAGCTTTTCCCTTTCTTGA+AGG - chr5_1:3923368-3923387 Msa0712080:CDS 40.0%
AAAAGAGCAATCCATTGTGC+AGG + chr5_1:3923480-3923499 None:intergenic 40.0%
CTCCTCATTTGAGAATCACA+GGG - chr5_1:3923529-3923548 Msa0712080:CDS 40.0%
ATCCCTGTGATTCTCAAATG+AGG + chr5_1:3923534-3923553 None:intergenic 40.0%
! TCATCAGCAGAAAGAGGTTT+TGG - chr5_1:3923554-3923573 Msa0712080:CDS 40.0%
!!! GAAAGAGGTTTTGGAGCAAA+TGG - chr5_1:3923563-3923582 Msa0712080:CDS 40.0%
CAGCTTCTTCAGAAAGCTTA+TGG + chr5_1:3923590-3923609 None:intergenic 40.0%
AGAACAGGGTTGAATTGGAA+TGG + chr5_1:3923627-3923646 None:intergenic 40.0%
TGCTAAGAACAGGGTTGAAT+TGG + chr5_1:3923632-3923651 None:intergenic 40.0%
GACAAACTTCGTGTGAAAAC+CGG - chr5_1:3923672-3923691 Msa0712080:CDS 40.0%
! TCTGCAGTTACATTCCCTTT+TGG - chr5_1:3923719-3923738 Msa0712080:CDS 40.0%
TTCATCATCCAAGGCCAAAA+GGG + chr5_1:3923736-3923755 None:intergenic 40.0%
ATTCATCATCCAAGGCCAAA+AGG + chr5_1:3923737-3923756 None:intergenic 40.0%
TGAGGATGATTCATCATCCA+AGG + chr5_1:3923745-3923764 None:intergenic 40.0%
TGGATGATGAATCATCCTCA+AGG - chr5_1:3923745-3923764 Msa0712080:CDS 40.0%
! TCATAAGCATGGCTTTTTGC+AGG + chr5_1:3923812-3923831 None:intergenic 40.0%
! GACGATGATGATGTTGAATC+GGG + chr5_1:3923897-3923916 None:intergenic 40.0%
! CGACGATGATGATGTTGAAT+CGG + chr5_1:3923898-3923917 None:intergenic 40.0%
ATTGAAGCAGATGAAGATGC+TGG + chr5_1:3923921-3923940 None:intergenic 40.0%
GAGTTTGTCACCAAAAGTCA+TGG - chr5_1:3923971-3923990 Msa0712080:CDS 40.0%
! TCGGTTACAACCATGACTTT+TGG + chr5_1:3923984-3924003 None:intergenic 40.0%
TCACAACGGTTCAACATTGA+TGG - chr5_1:3924016-3924035 Msa0712080:CDS 40.0%
AAGGTTGAGAAGATGCTGTT+TGG - chr5_1:3924125-3924144 Msa0712080:CDS 40.0%
TTGTGAAGGAGCTGAAAGAA+AGG - chr5_1:3924172-3924191 Msa0712080:CDS 40.0%
! AGACTTGATTCGTGTGGATT+TGG - chr5_1:3924227-3924246 Msa0712080:CDS 40.0%
TCTACAGAGTTATGGTTGTG+AGG - chr5_1:3924295-3924314 Msa0712080:CDS 40.0%
CTACAGAGTTATGGTTGTGA+GGG - chr5_1:3924296-3924315 Msa0712080:CDS 40.0%
! ATGGTTGTGTAGTAACTTGC+TGG - chr5_1:3924339-3924358 Msa0712080:CDS 40.0%
!! TAGTAACTTGCTGGCAAGAT+AGG - chr5_1:3924348-3924367 Msa0712080:CDS 40.0%
GCTAGGTGAAACTGACATCA+TGG + chr5_1:3923031-3923050 None:intergenic 45.0%
TCAGTTTCACCTAGCATAGG+AGG - chr5_1:3923036-3923055 Msa0712080:CDS 45.0%
TCACCTAGCATAGGAGGAAT+AGG - chr5_1:3923042-3923061 Msa0712080:CDS 45.0%
GATCCTATTCCTCCTATGCT+AGG + chr5_1:3923048-3923067 None:intergenic 45.0%
! TCACTGAAGCACTTGCTGAT+AGG - chr5_1:3923253-3923272 Msa0712080:CDS 45.0%
! TTTAAGGCTCTATGGAGTCC+AGG + chr5_1:3923294-3923313 None:intergenic 45.0%
! GCTTTTCCCTTTCTTGAAGG+TGG - chr5_1:3923371-3923390 Msa0712080:CDS 45.0%
!! GTTTTGAGTGCAAGACCTGA+AGG - chr5_1:3923504-3923523 Msa0712080:CDS 45.0%
CCTGTGATTCTCAAATGAGG+AGG + chr5_1:3923531-3923550 None:intergenic 45.0%
CCTCCTCATTTGAGAATCAC+AGG - chr5_1:3923528-3923547 Msa0712080:CDS 45.0%
AGGGATTCATCAGCAGAAAG+AGG - chr5_1:3923548-3923567 Msa0712080:CDS 45.0%
! GTTACATTCCCTTTTGGCCT+TGG - chr5_1:3923725-3923744 Msa0712080:CDS 45.0%
GATGATGTTGAATCGGGACT+TGG + chr5_1:3923891-3923910 None:intergenic 45.0%
AGTCATGGTTGTAACCGAAC+AGG - chr5_1:3923986-3924005 Msa0712080:CDS 45.0%
GTTGTGATTCGAGTCCTGTT+CGG + chr5_1:3924003-3924022 None:intergenic 45.0%
GAACAGGACTCGAATCACAA+CGG - chr5_1:3924002-3924021 Msa0712080:CDS 45.0%
ACGGTTCAACATTGATGGAG+AGG - chr5_1:3924021-3924040 Msa0712080:CDS 45.0%
! TGAGAAGATGCTGTTTGGTG+AGG - chr5_1:3924130-3924149 Msa0712080:CDS 45.0%
ATGGTATGTTGCAGGCAAGA+AGG - chr5_1:3924270-3924289 Msa0712080:CDS 45.0%
GCTAGGTGAAACTGACATCA+TGG + chr5_1:3923031-3923050 None:intergenic 45.0%
TCAGTTTCACCTAGCATAGG+AGG - chr5_1:3923036-3923055 Msa0712080:CDS 45.0%
TCACCTAGCATAGGAGGAAT+AGG - chr5_1:3923042-3923061 Msa0712080:CDS 45.0%
GATCCTATTCCTCCTATGCT+AGG + chr5_1:3923048-3923067 None:intergenic 45.0%
! TCACTGAAGCACTTGCTGAT+AGG - chr5_1:3923253-3923272 Msa0712080:CDS 45.0%
! TTTAAGGCTCTATGGAGTCC+AGG + chr5_1:3923294-3923313 None:intergenic 45.0%
! GCTTTTCCCTTTCTTGAAGG+TGG - chr5_1:3923371-3923390 Msa0712080:CDS 45.0%
!! GTTTTGAGTGCAAGACCTGA+AGG - chr5_1:3923504-3923523 Msa0712080:CDS 45.0%
CCTGTGATTCTCAAATGAGG+AGG + chr5_1:3923531-3923550 None:intergenic 45.0%
CCTCCTCATTTGAGAATCAC+AGG - chr5_1:3923528-3923547 Msa0712080:CDS 45.0%
AGGGATTCATCAGCAGAAAG+AGG - chr5_1:3923548-3923567 Msa0712080:CDS 45.0%
! GTTACATTCCCTTTTGGCCT+TGG - chr5_1:3923725-3923744 Msa0712080:CDS 45.0%
GATGATGTTGAATCGGGACT+TGG + chr5_1:3923891-3923910 None:intergenic 45.0%
AGTCATGGTTGTAACCGAAC+AGG - chr5_1:3923986-3924005 Msa0712080:CDS 45.0%
GTTGTGATTCGAGTCCTGTT+CGG + chr5_1:3924003-3924022 None:intergenic 45.0%
GAACAGGACTCGAATCACAA+CGG - chr5_1:3924002-3924021 Msa0712080:CDS 45.0%
ACGGTTCAACATTGATGGAG+AGG - chr5_1:3924021-3924040 Msa0712080:CDS 45.0%
! TGAGAAGATGCTGTTTGGTG+AGG - chr5_1:3924130-3924149 Msa0712080:CDS 45.0%
ATGGTATGTTGCAGGCAAGA+AGG - chr5_1:3924270-3924289 Msa0712080:CDS 45.0%
TCACAGCTTGCAACTCCTGA+TGG - chr5_1:3923201-3923220 Msa0712080:CDS 50.0%
CTCTGCATAGTGTCTCCATC+AGG + chr5_1:3923219-3923238 None:intergenic 50.0%
ATGCTGCTGAACCTGCACAA+TGG - chr5_1:3923466-3923485 Msa0712080:CDS 50.0%
CTCAAATGAGGAGGACCTTC+AGG + chr5_1:3923522-3923541 None:intergenic 50.0%
CAACAACAGCTTGGAGAGCT+AGG - chr5_1:3924381-3924400 Msa0712080:CDS 50.0%
TCACAGCTTGCAACTCCTGA+TGG - chr5_1:3923201-3923220 Msa0712080:CDS 50.0%
CTCTGCATAGTGTCTCCATC+AGG + chr5_1:3923219-3923238 None:intergenic 50.0%
ATGCTGCTGAACCTGCACAA+TGG - chr5_1:3923466-3923485 Msa0712080:CDS 50.0%
CTCAAATGAGGAGGACCTTC+AGG + chr5_1:3923522-3923541 None:intergenic 50.0%
CAACAACAGCTTGGAGAGCT+AGG - chr5_1:3924381-3924400 Msa0712080:CDS 50.0%
ACTTCGTGTGAAAACCGGCG+AGG - chr5_1:3923677-3923696 Msa0712080:CDS 55.0%
ACTAATTGCAAGCGCCTCGC+CGG + chr5_1:3923694-3923713 None:intergenic 55.0%
ACTTCGTGTGAAAACCGGCG+AGG - chr5_1:3923677-3923696 Msa0712080:CDS 55.0%
ACTAATTGCAAGCGCCTCGC+CGG + chr5_1:3923694-3923713 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 3922964 3924409 3922964 ID=Msa0712080;Name=Msa0712080
chr5_1 mRNA 3922964 3924409 3922964 ID=Msa0712080-mRNA-1;Parent=Msa0712080;Name=Msa0712080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|481
chr5_1 exon 3922964 3924409 3922964 ID=Msa0712080-mRNA-1:exon:1500;Parent=Msa0712080-mRNA-1
chr5_1 CDS 3922964 3924409 3922964 ID=Msa0712080-mRNA-1:cds;Parent=Msa0712080-mRNA-1
Gene Sequence

>Msa0712080

ATGGAATCTATGTTACAAGAAGAAGGGTCTTCATCAGTAACTTGTTCACCTCTACAGTTATTTTCCATGATGTCAGTTTCACCTAGCATAGGAGGAATAGGATCACCTTATCCATGGCTTAGTAGAGAATTGAAATCTGAGGAAAGGGGTTTGTATTTGATCCATTTGTTAATCACTTGTGCAAATCATGTAGCTTCTGGTAGTCTTGAAAGTGCAAACACAACACTTGAACAGATTTCACAGCTTGCAACTCCTGATGGAGACACTATGCAGAGAATTGCTGCTTATTTCACTGAAGCACTTGCTGATAGGATACTTAAAACTTGGCCTGGACTCCATAGAGCCTTAAATTCCACAAGAATTATTATGCTTTCTGAAGAAATTATGGTTCAGAAGTTTTTCTTTGAGCTTTTCCCTTTCTTGAAGGTGGCATATATTTTGACAAATCAAGCTATTGTTGAATCTATGGAAGGTGAGAAAATGGTTCATATTATTGATCTTAATGCTGCTGAACCTGCACAATGGATTGCTCTTTTACAAGTTTTGAGTGCAAGACCTGAAGGTCCTCCTCATTTGAGAATCACAGGGATTCATCAGCAGAAAGAGGTTTTGGAGCAAATGGGCCATAAGCTTTCTGAAGAAGCTGAGAAATTAGATATACCATTCCAATTCAACCCTGTTCTTAGCAAGCTAGAAAATCTTGATTTCGACAAACTTCGTGTGAAAACCGGCGAGGCGCTTGCAATTAGTTCTATTCTGCAGTTACATTCCCTTTTGGCCTTGGATGATGAATCATCCTCAAGGAGAAAAACTCCTATTATGTCAAGAAACTCAAATGGACTTCACCTGCAAAAAGCCATGCTTATGAACCAAAACACATCATTAGGTGATTTACTTGAAAAAGATATGGTTAATGGCTATAGTCCAAGTCCCGATTCAACATCATCATCGTCGCCAGCATCTTCATCTGCTTCAATGAATGTGGAGAGTTTTCTCAATGCTTTATGGAGTTTGTCACCAAAAGTCATGGTTGTAACCGAACAGGACTCGAATCACAACGGTTCAACATTGATGGAGAGGCTGCTTGAAGCCCTATATTCTTATGCAGCATTGTTTGATTGTTTGGAGTCAACTGTATCAAGAACATCCCTAGAGAGATTAAAGGTTGAGAAGATGCTGTTTGGTGAGGAAATCAAGAACATAATTGCTTGTGAAGGAGCTGAAAGAAAGGAAAGACATGAAAAACTTGATAAATGGTTTATGAGACTTGATTCGTGTGGATTTGGTAATGTGCCTTTAAGCTATTATGGTATGTTGCAGGCAAGAAGGTTTCTACAGAGTTATGGTTGTGAGGGATATAGAATGAGAGAAGAAAATGGTTGTGTAGTAACTTGCTGGCAAGATAGGTCTTTGTTTTCAACAACAGCTTGGAGAGCTAGGAAGTAA
Protein sequence

>Msa0712080

MESMLQEEGSSSVTCSPLQLFSMMSVSPSIGGIGSPYPWLSRELKSEERGLYLIHLLITCANHVASGSLESANTTLEQISQLATPDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRIIMLSEEIMVQKFFFELFPFLKVAYILTNQAIVESMEGEKMVHIIDLNAAEPAQWIALLQVLSARPEGPPHLRITGIHQQKEVLEQMGHKLSEEAEKLDIPFQFNPVLSKLENLDFDKLRVKTGEALAISSILQLHSLLALDDESSSRRKTPIMSRNSNGLHLQKAMLMNQNTSLGDLLEKDMVNGYSPSPDSTSSSSPASSSASMNVESFLNALWSLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERLKVEKMLFGEEIKNIIACEGAERKERHEKLDKWFMRLDSCGFGNVPLSYYGMLQARRFLQSYGCEGYRMREENGCVVTCWQDRSLFSTTAWRARK*