Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688670 | XP_024625734.1 | 92.705 | 562 | 36 | 1 | 1 | 562 | 1 | 557 | 0.0 | 990 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688670 | sp|Q66GQ2|Y5162_ARATH | 36.603 | 418 | 168 | 8 | 16 | 358 | 17 | 412 | 4.90e-67 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688670 | A0A396H8E0 | 92.705 | 562 | 36 | 1 | 1 | 562 | 1 | 557 | 0.0 | 990 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001790 | Msa0688670 | 0.809063 | 2.276593e-50 | -8.615850e-47 |
| Msa0004920 | Msa0688670 | 0.803480 | 3.417350e-49 | -8.615850e-47 |
| Msa0011720 | Msa0688670 | 0.815439 | 9.241660e-52 | -8.615850e-47 |
| Msa0014800 | Msa0688670 | 0.826148 | 3.180405e-54 | -8.615850e-47 |
| Msa0023470 | Msa0688670 | 0.802140 | 6.460118e-49 | -8.615850e-47 |
| Msa0041970 | Msa0688670 | 0.801258 | 9.802862e-49 | -8.615850e-47 |
| Msa0048000 | Msa0688670 | 0.805154 | 1.530496e-49 | -8.615850e-47 |
| Msa0050760 | Msa0688670 | 0.804961 | 1.680349e-49 | -8.615850e-47 |
| Msa0053900 | Msa0688670 | 0.808843 | 2.538222e-50 | -8.615850e-47 |
| Msa0071240 | Msa0688670 | 0.813174 | 2.925764e-51 | -8.615850e-47 |
| Msa0092990 | Msa0688670 | 0.812276 | 4.600482e-51 | -8.615850e-47 |
| Msa0108560 | Msa0688670 | 0.816069 | 6.687448e-52 | -8.615850e-47 |
| Msa0608710 | Msa0688670 | 0.812872 | 3.406124e-51 | -8.615850e-47 |
| Msa0617830 | Msa0688670 | 0.810732 | 9.957208e-51 | -8.615850e-47 |
| Msa0628740 | Msa0688670 | 0.814118 | 1.813366e-51 | -8.615850e-47 |
| Msa0638280 | Msa0688670 | 0.813680 | 2.264432e-51 | -8.615850e-47 |
| Msa0638320 | Msa0688670 | 0.818133 | 2.298117e-52 | -8.615850e-47 |
| Msa0647830 | Msa0688670 | 0.800253 | 1.571527e-48 | -8.615850e-47 |
| Msa0651270 | Msa0688670 | 0.806288 | 8.848053e-50 | -8.615850e-47 |
| Msa0654720 | Msa0688670 | 0.811137 | 8.137337e-51 | -8.615850e-47 |
| Msa0660300 | Msa0688670 | 0.821569 | 3.765655e-53 | -8.615850e-47 |
| Msa0662650 | Msa0688670 | 0.805122 | 1.554839e-49 | -8.615850e-47 |
| Msa0666140 | Msa0688670 | 0.804728 | 1.879470e-49 | -8.615850e-47 |
| Msa0677270 | Msa0688670 | 0.813684 | 2.260099e-51 | -8.615850e-47 |
| Msa0688670 | Msa0692230 | 0.806830 | 6.798707e-50 | -8.615850e-47 |
| Msa0688670 | Msa0693380 | 0.808213 | 3.458509e-50 | -8.615850e-47 |
| Msa0688670 | Msa0694250 | 0.812723 | 3.672054e-51 | -8.615850e-47 |
| Msa0688670 | Msa0698360 | 0.816526 | 5.285191e-52 | -8.615850e-47 |
| Msa0688670 | Msa0708860 | 0.804560 | 2.037248e-49 | -8.615850e-47 |
| Msa0688670 | Msa0712080 | 0.801999 | 6.908833e-49 | -8.615850e-47 |
| Msa0688670 | Msa0714340 | 0.815938 | 7.152690e-52 | -8.615850e-47 |
| Msa0688670 | Msa0715110 | 0.802737 | 4.867854e-49 | -8.615850e-47 |
| Msa0688670 | Msa0724560 | 0.840569 | 8.033519e-58 | -8.615850e-47 |
| Msa0688670 | Msa0724830 | 0.806948 | 6.420033e-50 | -8.615850e-47 |
| Msa0688670 | Msa0726860 | 0.824479 | 7.892105e-54 | -8.615850e-47 |
| Msa0688670 | Msa0731180 | 0.814583 | 1.430908e-51 | -8.615850e-47 |
| Msa0688670 | Msa0749930 | 0.833295 | 5.788624e-56 | -8.615850e-47 |
| Msa0688670 | Msa0750430 | 0.812569 | 3.968938e-51 | -8.615850e-47 |
| Msa0688670 | Msa0756310 | 0.822987 | 1.764854e-53 | -8.615850e-47 |
| Msa0688670 | Msa0757050 | 0.822362 | 2.466695e-53 | -8.615850e-47 |
| Msa0688670 | Msa0767220 | 0.808929 | 2.431883e-50 | -8.615850e-47 |
| Msa0688670 | Msa0771720 | 0.813179 | 2.918257e-51 | -8.615850e-47 |
| Msa0688670 | Msa0788710 | 0.807916 | 3.999911e-50 | -8.615850e-47 |
| Msa0688670 | Msa0789270 | 0.811078 | 8.379469e-51 | -8.615850e-47 |
| Msa0688670 | Msa0789280 | 0.806898 | 6.577417e-50 | -8.615850e-47 |
| Msa0688670 | Msa0789290 | 0.806788 | 6.937721e-50 | -8.615850e-47 |
| Msa0688670 | Msa0789300 | 0.809005 | 2.342909e-50 | -8.615850e-47 |
| Msa0688670 | Msa0792090 | 0.802872 | 4.564177e-49 | -8.615850e-47 |
| Msa0688670 | Msa0795080 | 0.811509 | 6.757958e-51 | -8.615850e-47 |
| Msa0688670 | Msa0798030 | 0.813397 | 2.612619e-51 | -8.615850e-47 |
| Msa0688670 | Msa0830420 | 0.837027 | 6.623588e-57 | -8.615850e-47 |
| Msa0688670 | Msa0835730 | 0.823832 | 1.119884e-53 | -8.615850e-47 |
| Msa0688670 | Msa0848900 | 0.839402 | 1.619157e-57 | -8.615850e-47 |
| Msa0688670 | Msa0869120 | 0.819097 | 1.388958e-52 | -8.615850e-47 |
| Msa0688670 | Msa0877410 | 0.825156 | 5.466645e-54 | -8.615850e-47 |
| Msa0688670 | Msa0881020 | 0.803675 | 3.113548e-49 | -8.615850e-47 |
| Msa0688670 | Msa0882510 | 0.807044 | 6.125229e-50 | -8.615850e-47 |
| Msa0688670 | Msa0899230 | 0.815515 | 8.886946e-52 | -8.615850e-47 |
| Msa0688670 | Msa0908170 | 0.841043 | 6.036589e-58 | -8.615850e-47 |
| Msa0688670 | Msa0910980 | -0.819506 | 1.120605e-52 | -8.615850e-47 |
| Msa0688670 | Msa0927670 | 0.828670 | 7.899983e-55 | -8.615850e-47 |
| Msa0688670 | Msa0930140 | 0.812666 | 3.779898e-51 | -8.615850e-47 |
| Msa0688670 | Msa0933230 | 0.800317 | 1.525426e-48 | -8.615850e-47 |
| Msa0688670 | Msa0933310 | 0.800068 | 1.714433e-48 | -8.615850e-47 |
| Msa0688670 | Msa0944550 | 0.818569 | 1.830538e-52 | -8.615850e-47 |
| Msa0688670 | Msa0944770 | 0.805829 | 1.104945e-49 | -8.615850e-47 |
| Msa0688670 | Msa0960160 | 0.826641 | 2.426565e-54 | -8.615850e-47 |
| Msa0688670 | Msa0962770 | 0.819570 | 1.083495e-52 | -8.615850e-47 |
| Msa0688670 | Msa0982270 | 0.847151 | 1.386025e-59 | -8.615850e-47 |
| Msa0688670 | Msa0993530 | 0.804767 | 1.844736e-49 | -8.615850e-47 |
| Msa0688670 | Msa0999040 | 0.822266 | 2.596377e-53 | -8.615850e-47 |
| Msa0688670 | Msa1002480 | 0.948076 | 1.928235e-106 | -8.615850e-47 |
| Msa0688670 | Msa1005410 | 0.805141 | 1.540749e-49 | -8.615850e-47 |
| Msa0688670 | Msa1021540 | 0.817002 | 4.132131e-52 | -8.615850e-47 |
| Msa0688670 | Msa1037700 | -0.819658 | 1.034365e-52 | -8.615850e-47 |
| Msa0688670 | Msa1039880 | 0.813360 | 2.662750e-51 | -8.615850e-47 |
| Msa0688670 | Msa1082500 | 0.809455 | 1.876592e-50 | -8.615850e-47 |
| Msa0688670 | Msa1092090 | 0.852037 | 6.003642e-61 | -8.615850e-47 |
| Msa0688670 | Msa1100480 | 0.819514 | 1.115995e-52 | -8.615850e-47 |
| Msa0688670 | Msa1118110 | 0.803675 | 3.113548e-49 | -8.615850e-47 |
| Msa0688670 | Msa1124540 | -0.801707 | 7.928867e-49 | -8.615850e-47 |
| Msa0688670 | Msa1130110 | 0.961697 | 5.278045e-120 | -8.615850e-47 |
| Msa0688670 | Msa1130210 | -0.816170 | 6.349174e-52 | -8.615850e-47 |
| Msa0688670 | Msa1148130 | 0.802740 | 4.861355e-49 | -8.615850e-47 |
| Msa0688670 | Msa1151710 | 0.803458 | 3.452643e-49 | -8.615850e-47 |
| Msa0688670 | Msa1158670 | 0.809311 | 2.014433e-50 | -8.615850e-47 |
| Msa0688670 | Msa1172670 | 0.808009 | 3.821811e-50 | -8.615850e-47 |
| Msa0688670 | Msa1187520 | 0.813104 | 3.030417e-51 | -8.615850e-47 |
| Msa0688670 | Msa1199560 | 0.833907 | 4.072467e-56 | -8.615850e-47 |
| Msa0688670 | Msa1206020 | 0.822190 | 2.704154e-53 | -8.615850e-47 |
| Msa0688670 | Msa1208180 | 0.801197 | 1.008825e-48 | -8.615850e-47 |
| Msa0688670 | Msa1217660 | 0.831084 | 2.039376e-55 | -8.615850e-47 |
| Msa0688670 | Msa1217810 | 0.851176 | 1.052146e-60 | -8.615850e-47 |
| Msa0688670 | Msa1217830 | 0.833432 | 5.351419e-56 | -8.615850e-47 |
| Msa0688670 | Msa1218650 | 0.801832 | 7.475104e-49 | -8.615850e-47 |
| Msa0688670 | Msa1224500 | 0.811417 | 7.073109e-51 | -8.615850e-47 |
| Msa0688670 | Msa1233500 | 0.850583 | 1.546366e-60 | -8.615850e-47 |
| Msa0688670 | Msa1258380 | -0.801193 | 1.010408e-48 | -8.615850e-47 |
| Msa0688670 | Msa1267260 | 0.815007 | 1.152361e-51 | -8.615850e-47 |
| Msa0688670 | Msa1276440 | 0.808607 | 2.850677e-50 | -8.615850e-47 |
| Msa0688670 | Msa1279210 | 0.822380 | 2.443189e-53 | -8.615850e-47 |
| Msa0688670 | Msa1282920 | 0.836062 | 1.166010e-56 | -8.615850e-47 |
| Msa0688670 | Msa1294480 | 0.801797 | 7.599245e-49 | -8.615850e-47 |
| Msa0688670 | Msa1300350 | -0.803796 | 2.938702e-49 | -8.615850e-47 |
| Msa0688670 | Msa1306750 | 0.842840 | 2.022082e-58 | -8.615850e-47 |
| Msa0688670 | Msa1307740 | 0.841860 | 3.677519e-58 | -8.615850e-47 |
| Msa0688670 | Msa1314340 | 0.814508 | 1.486870e-51 | -8.615850e-47 |
| Msa0688670 | Msa1322190 | 0.835897 | 1.284271e-56 | -8.615850e-47 |
| Msa0688670 | Msa1328700 | 0.834981 | 2.188255e-56 | -8.615850e-47 |
| Msa0688670 | Msa1328850 | 0.827033 | 1.955683e-54 | -8.615850e-47 |
| Msa0688670 | Msa1340650 | 0.809655 | 1.700011e-50 | -8.615850e-47 |
| Msa0688670 | Msa1372580 | 0.825689 | 4.087994e-54 | -8.615850e-47 |
| Msa0688670 | Msa1382930 | 0.978558 | 4.447124e-146 | -8.615850e-47 |
| Msa0688670 | Msa1404540 | 0.813366 | 2.654280e-51 | -8.615850e-47 |
| Msa0688670 | Msa1419110 | 0.806216 | 9.160487e-50 | -8.615850e-47 |
| Msa0688670 | Msa1423450 | 0.808409 | 3.141196e-50 | -8.615850e-47 |
| Msa0688670 | Msa1425010 | 0.841449 | 4.719190e-58 | -8.615850e-47 |
| Msa0688670 | Msa1427830 | 0.821197 | 4.588789e-53 | -8.615850e-47 |
| Msa0688670 | Msa1429900 | 0.801234 | 9.914029e-49 | -8.615850e-47 |
| Msa0688670 | Msa1431060 | 0.807016 | 6.210021e-50 | -8.615850e-47 |
| Msa0688670 | Msa1435370 | 0.818069 | 2.376207e-52 | -8.615850e-47 |
| Msa0688670 | Msa1437680 | 0.828913 | 6.900268e-55 | -8.615850e-47 |
| Msa0688670 | Msa1438910 | 0.974256 | 7.762178e-138 | -8.615850e-47 |
| Msa0688670 | Msa1439230 | 0.802746 | 4.845844e-49 | -8.615850e-47 |
| Msa0688670 | Msa1440000 | 0.805610 | 1.228387e-49 | -8.615850e-47 |
| Msa0688670 | Msa1440600 | 0.804980 | 1.664643e-49 | -8.615850e-47 |
| Msa0688670 | Msa1440910 | 0.821620 | 3.664318e-53 | -8.615850e-47 |
| Msa0688670 | Msa1444250 | -0.801778 | 7.668952e-49 | -8.615850e-47 |
| Msa0688670 | Msa1450020 | 0.805439 | 1.334488e-49 | -8.615850e-47 |
| Msa0688670 | Msa1454110 | 0.825087 | 5.675878e-54 | -8.615850e-47 |
| Msa0148360 | Msa0688670 | 0.810199 | 1.297988e-50 | -8.615850e-47 |
| Msa0188630 | Msa0688670 | 0.827534 | 1.483713e-54 | -8.615850e-47 |
| Msa0220440 | Msa0688670 | 0.816762 | 4.678091e-52 | -8.615850e-47 |
| Msa0223290 | Msa0688670 | 0.802256 | 6.114454e-49 | -8.615850e-47 |
| Msa0223380 | Msa0688670 | 0.825342 | 4.938060e-54 | -8.615850e-47 |
| Msa0233610 | Msa0688670 | 0.826791 | 2.234821e-54 | -8.615850e-47 |
| Msa0236440 | Msa0688670 | 0.832238 | 1.059171e-55 | -8.615850e-47 |
| Msa0379640 | Msa0688670 | 0.809840 | 1.551112e-50 | -8.615850e-47 |
| Msa0388840 | Msa0688670 | 0.807492 | 4.922887e-50 | -8.615850e-47 |
| Msa0389810 | Msa0688670 | 0.838079 | 3.559122e-57 | -8.615850e-47 |
| Msa0394340 | Msa0688670 | 0.802340 | 5.878187e-49 | -8.615850e-47 |
| Msa0404230 | Msa0688670 | 0.806431 | 8.254583e-50 | -8.615850e-47 |
| Msa0419620 | Msa0688670 | -0.821408 | 4.102704e-53 | -8.615850e-47 |
| Msa0464420 | Msa0688670 | 0.806453 | 8.165150e-50 | -8.615850e-47 |
| Msa0464900 | Msa0688670 | 0.841158 | 5.631632e-58 | -8.615850e-47 |
| Msa0465680 | Msa0688670 | -0.802386 | 5.749704e-49 | -8.615850e-47 |
| Msa0468130 | Msa0688670 | 0.839575 | 1.460031e-57 | -8.615850e-47 |
| Msa0473240 | Msa0688670 | 0.805531 | 1.276388e-49 | -8.615850e-47 |
| Msa0475410 | Msa0688670 | 0.801510 | 8.702947e-49 | -8.615850e-47 |
| Msa0477130 | Msa0688670 | -0.810900 | 9.157559e-51 | -8.615850e-47 |
| Msa0482190 | Msa0688670 | -0.804419 | 2.179993e-49 | -8.615850e-47 |
| Msa0248980 | Msa0688670 | 0.807585 | 4.703697e-50 | -8.615850e-47 |
| Msa0260810 | Msa0688670 | 0.808360 | 3.218303e-50 | -8.615850e-47 |
| Msa0269450 | Msa0688670 | 0.808906 | 2.459618e-50 | -8.615850e-47 |
| Msa0270100 | Msa0688670 | 0.805275 | 1.443831e-49 | -8.615850e-47 |
| Msa0270270 | Msa0688670 | 0.812276 | 4.600482e-51 | -8.615850e-47 |
| Msa0282170 | Msa0688670 | 0.810020 | 1.418713e-50 | -8.615850e-47 |
| Msa0282250 | Msa0688670 | 0.814267 | 1.680945e-51 | -8.615850e-47 |
| Msa0288240 | Msa0688670 | 0.806608 | 7.574125e-50 | -8.615850e-47 |
| Msa0299580 | Msa0688670 | 0.812598 | 3.912090e-51 | -8.615850e-47 |
| Msa0304290 | Msa0688670 | 0.805785 | 1.128546e-49 | -8.615850e-47 |
| Msa0304330 | Msa0688670 | 0.806095 | 9.713445e-50 | -8.615850e-47 |
| Msa0323180 | Msa0688670 | 0.819922 | 9.005841e-53 | -8.615850e-47 |
| Msa0326670 | Msa0688670 | 0.801955 | 7.051215e-49 | -8.615850e-47 |
| Msa0327410 | Msa0688670 | 0.809142 | 2.189993e-50 | -8.615850e-47 |
| Msa0484780 | Msa0688670 | 0.823788 | 1.146847e-53 | -8.615850e-47 |
| Msa0485120 | Msa0688670 | 0.810526 | 1.103104e-50 | -8.615850e-47 |
| Msa0489030 | Msa0688670 | 0.810286 | 1.242817e-50 | -8.615850e-47 |
| Msa0511720 | Msa0688670 | -0.828936 | 6.814525e-55 | -8.615850e-47 |
| Msa0547400 | Msa0688670 | 0.807224 | 5.609949e-50 | -8.615850e-47 |
| Msa0553460 | Msa0688670 | 0.801461 | 8.905424e-49 | -8.615850e-47 |
| Msa0561230 | Msa0688670 | 0.817555 | 3.103015e-52 | -8.615850e-47 |
| Msa0575470 | Msa0688670 | 0.843113 | 1.710221e-58 | -8.615850e-47 |
| Msa0599580 | Msa0688670 | 0.809301 | 2.025009e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688670 | MtrunA17_Chr7g0275251 | 92.705 | 562 | 36 | 1 | 1 | 562 | 1 | 557 | 0.0 | 990 |
| Msa0688670 | MtrunA17_Chr8g0347871 | 42.061 | 592 | 251 | 16 | 15 | 561 | 14 | 558 | 3.62e-119 | 363 |
| Msa0688670 | MtrunA17_Chr5g0397031 | 41.873 | 363 | 145 | 8 | 54 | 358 | 60 | 414 | 6.48e-74 | 248 |
| Msa0688670 | MtrunA17_Chr7g0266861 | 27.488 | 422 | 201 | 14 | 22 | 357 | 36 | 438 | 3.50e-25 | 110 |
| Msa0688670 | MtrunA17_Chr3g0098801 | 26.996 | 263 | 178 | 6 | 135 | 396 | 199 | 448 | 4.55e-22 | 100 |
| Msa0688670 | MtrunA17_Chr5g0444041 | 29.130 | 230 | 149 | 3 | 129 | 358 | 188 | 403 | 5.63e-22 | 100 |
| Msa0688670 | MtrunA17_Chr4g0026051 | 25.879 | 398 | 222 | 12 | 22 | 356 | 48 | 435 | 8.33e-19 | 90.1 |
| Msa0688670 | MtrunA17_Chr2g0321731 | 26.766 | 269 | 183 | 5 | 116 | 379 | 205 | 464 | 3.30e-17 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688670 | AT5G41620.1 | 36.603 | 418 | 168 | 8 | 16 | 358 | 17 | 412 | 4.99e-68 | 231 |
| Msa0688670 | AT5G41620.4 | 42.857 | 294 | 137 | 3 | 92 | 358 | 6 | 295 | 6.63e-64 | 218 |
| Msa0688670 | AT5G41620.3 | 42.857 | 294 | 137 | 3 | 92 | 358 | 6 | 295 | 6.63e-64 | 218 |
| Msa0688670 | AT1G64180.1 | 31.250 | 560 | 285 | 15 | 62 | 554 | 61 | 587 | 6.51e-58 | 204 |
| Msa0688670 | AT5G41620.2 | 46.847 | 222 | 112 | 2 | 139 | 358 | 36 | 253 | 2.57e-54 | 191 |
| Msa0688670 | AT2G46250.1 | 35.207 | 338 | 157 | 7 | 27 | 329 | 20 | 330 | 8.05e-41 | 154 |
| Msa0688670 | AT3G11590.1 | 29.647 | 425 | 206 | 11 | 13 | 357 | 35 | 446 | 5.54e-35 | 139 |
| Msa0688670 | AT2G46250.2 | 40.580 | 207 | 102 | 2 | 123 | 329 | 54 | 239 | 7.99e-33 | 130 |
| Msa0688670 | AT3G11590.2 | 33.790 | 219 | 141 | 2 | 139 | 357 | 70 | 284 | 4.34e-27 | 114 |
| Msa0688670 | AT1G50660.1 | 27.574 | 272 | 173 | 8 | 129 | 396 | 212 | 463 | 3.38e-25 | 110 |
| Msa0688670 | AT3G20350.1 | 24.852 | 338 | 217 | 10 | 75 | 396 | 140 | 456 | 3.52e-24 | 107 |
Find 108 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTCCTTGACTTCTTTAA+TGG | 0.167681 | 4_4:+54823609 | None:intergenic |
| GGTGGAAAAGTTGAAACTTT+TGG | 0.234292 | 4_4:-54825554 | Msa0688670:CDS |
| AGTAAAAGACAATACATTTA+TGG | 0.302608 | 4_4:-54823113 | Msa0688670:CDS |
| TTCATAATCTCTTACTCCTT+TGG | 0.317548 | 4_4:+54823879 | None:intergenic |
| TCACCCTTGCCTACCTTCAT+TGG | 0.324543 | 4_4:-54823587 | Msa0688670:CDS |
| GCGGATAAGGATCGCATTAA+TGG | 0.328056 | 4_4:-54823826 | Msa0688670:CDS |
| GAGGGGAAATCAAGTGAAAT+TGG | 0.348447 | 4_4:-54823442 | Msa0688670:CDS |
| CCATTCTGCAGTTACAGTTA+AGG | 0.372039 | 4_4:-54823218 | Msa0688670:CDS |
| TCAAAATTTCAAGTTGAAGA+TGG | 0.377914 | 4_4:-54825620 | Msa0688670:exon |
| ATTGAGCTAAGGCAATTAGA+AGG | 0.381758 | 4_4:+54824634 | None:intergenic |
| TTCTAATTGCCTTAGCTCAA+TGG | 0.385938 | 4_4:-54824632 | Msa0688670:CDS |
| CACTAGCCAGCTTCTGATAC+AGG | 0.387417 | 4_4:+54824001 | None:intergenic |
| TACTTCACATTTCAGAGGCT+TGG | 0.392687 | 4_4:-54823783 | Msa0688670:CDS |
| ATTGGATTCCTTTCAACTAA+AGG | 0.395468 | 4_4:-54823569 | Msa0688670:CDS |
| ACTGCTTGAAGCAAGGTTAG+AGG | 0.396153 | 4_4:-54823086 | Msa0688670:CDS |
| GAAAATGAATAAGCAGGAAA+TGG | 0.398382 | 4_4:-54824157 | Msa0688670:CDS |
| CATTCTGCAGTTACAGTTAA+GGG | 0.406187 | 4_4:-54823217 | Msa0688670:CDS |
| TTGGAGAAGAGAGGAGGAAG+AGG | 0.410484 | 4_4:-54825535 | Msa0688670:CDS |
| AGACTGAGACATGTTGAAAT+CGG | 0.412710 | 4_4:+54823156 | None:intergenic |
| GAAAAGGGAAGAAGGAATAA+TGG | 0.415845 | 4_4:-54825575 | Msa0688670:CDS |
| TGTTTCCAACTAACTGTTCA+AGG | 0.418652 | 4_4:+54823305 | None:intergenic |
| TATGCATAATAGTGCGGATA+AGG | 0.427280 | 4_4:-54823839 | Msa0688670:CDS |
| CACAGCCTTGAACAGTTAGT+TGG | 0.447691 | 4_4:-54823310 | Msa0688670:CDS |
| TAGCCGGCGTCTTGAAGAAC+AGG | 0.450663 | 4_4:-54824265 | Msa0688670:CDS |
| ATGTGATTCTATTCTACAAA+AGG | 0.451168 | 4_4:+54822973 | None:intergenic |
| TATATCCTGAGAGTATTTGC+AGG | 0.458388 | 4_4:-54823255 | Msa0688670:CDS |
| CTTAACAAGTGCTTTGTTGA+GGG | 0.464066 | 4_4:-54823460 | Msa0688670:CDS |
| CCAACAAGTTTGAACAGAAA+AGG | 0.465731 | 4_4:-54823498 | Msa0688670:CDS |
| TATTGTCTCCTTTAGTTGAA+AGG | 0.466986 | 4_4:+54823561 | None:intergenic |
| ATCAGTCGACAGAAATTGTT+CGG | 0.469683 | 4_4:-54824674 | Msa0688670:CDS |
| TTTGTCATCAGAAGGTGATA+AGG | 0.472314 | 4_4:-54823278 | Msa0688670:CDS |
| TATGAGGAGGCTCATGGTGG+TGG | 0.473227 | 4_4:+54825371 | None:intergenic |
| GAAATCTCTGTGCTAAACTC+TGG | 0.476454 | 4_4:-54825405 | Msa0688670:CDS |
| AACTCTTGTTGATGAGAAGA+AGG | 0.480434 | 4_4:+54825463 | None:intergenic |
| GTGACATGAATTAATTCCCT+TGG | 0.485875 | 4_4:+54823330 | None:intergenic |
| AGAAAAGAAAATGAATAAGC+AGG | 0.487246 | 4_4:-54824163 | Msa0688670:CDS |
| TTAATGGTGATAGCCTTGAT+AGG | 0.491514 | 4_4:-54823810 | Msa0688670:CDS |
| TACTTACTTCCATTGAGCTA+AGG | 0.494927 | 4_4:+54824623 | None:intergenic |
| GAGAACCTTGACTAACTCTC+TGG | 0.496123 | 4_4:+54824293 | None:intergenic |
| AAAGTCCACCAGAAAATGAT+AGG | 0.498720 | 4_4:-54823360 | Msa0688670:CDS |
| CCTTGACTTCTTTAATGGAG+GGG | 0.499105 | 4_4:+54823614 | None:intergenic |
| TCCTTGACTTCTTTAATGGA+GGG | 0.499288 | 4_4:+54823613 | None:intergenic |
| AGGAAGAGATTGAAGATGAA+AGG | 0.499321 | 4_4:-54824047 | Msa0688670:CDS |
| CTCGAGTCTCTAGCAGATGC+TGG | 0.502686 | 4_4:+54824733 | None:intergenic |
| AAGCAAGTTCAAGATGGTAT+TGG | 0.504529 | 4_4:-54823739 | Msa0688670:CDS |
| AGAAGAGAGGAGGAAGAGGA+AGG | 0.512890 | 4_4:-54825531 | Msa0688670:CDS |
| TTCCTTGACTTCTTTAATGG+AGG | 0.515224 | 4_4:+54823612 | None:intergenic |
| GACTGAGACATGTTGAAATC+GGG | 0.515513 | 4_4:+54823157 | None:intergenic |
| CATCACACAAATTCTCCAAA+AGG | 0.518761 | 4_4:+54823908 | None:intergenic |
| AGAAAGCCTGTATCAGAAGC+TGG | 0.520623 | 4_4:-54824007 | Msa0688670:CDS |
| GTCTACTAACAAATTACCTA+GGG | 0.524454 | 4_4:-54823137 | Msa0688670:CDS |
| CACCAGAAAATGATAGGTGC+AGG | 0.525944 | 4_4:-54823354 | Msa0688670:CDS |
| CCCCTCCATTAAAGAAGTCA+AGG | 0.526840 | 4_4:-54823614 | Msa0688670:CDS |
| AGTTGAAAGGAATCCAATGA+AGG | 0.527897 | 4_4:+54823574 | None:intergenic |
| TTCAAACTTGTTGGTACCAA+CGG | 0.528206 | 4_4:+54823507 | None:intergenic |
| CAACTATTGAATGTGTCTCT+AGG | 0.530200 | 4_4:+54823707 | None:intergenic |
| TGTGAAGTATTAGCCTATCA+AGG | 0.530785 | 4_4:+54823797 | None:intergenic |
| AACAGTTCTTTGTCATCAGA+AGG | 0.531010 | 4_4:-54823286 | Msa0688670:CDS |
| AATAGTGAAAGCTCTGATAG+TGG | 0.535399 | 4_4:-54824226 | Msa0688670:CDS |
| GCTTCCTCGGCAAAATTATG+AGG | 0.538410 | 4_4:+54823532 | None:intergenic |
| GGTACCAACGGAAGCTTCCT+CGG | 0.539258 | 4_4:+54823519 | None:intergenic |
| TGTATGGAGAAAAGGGAAGA+AGG | 0.539368 | 4_4:-54825583 | Msa0688670:CDS |
| CCTTAACTGTAACTGCAGAA+TGG | 0.540574 | 4_4:+54823218 | None:intergenic |
| TCTTCCCTGCAAATACTCTC+AGG | 0.540737 | 4_4:+54823250 | None:intergenic |
| AAATCTCTGTGCTAAACTCT+GGG | 0.540999 | 4_4:-54825404 | Msa0688670:CDS |
| ACTTAACAAGTGCTTTGTTG+AGG | 0.542539 | 4_4:-54823461 | Msa0688670:CDS |
| AGTCTACTAACAAATTACCT+AGG | 0.542626 | 4_4:-54823138 | Msa0688670:CDS |
| GTTCAACACCACCACCCACT+TGG | 0.555840 | 4_4:-54825501 | Msa0688670:CDS |
| TTGAGCTAAGGCAATTAGAA+GGG | 0.559447 | 4_4:+54824635 | None:intergenic |
| TTAACAAGTGCTTTGTTGAG+GGG | 0.561075 | 4_4:-54823459 | Msa0688670:CDS |
| TGGCAAAACTGCTTGAAGCA+AGG | 0.561650 | 4_4:-54823093 | Msa0688670:CDS |
| ACAAGTCTCCAAGTGGGTGG+TGG | 0.563442 | 4_4:+54825493 | None:intergenic |
| TCACACAAAGTTGATTCTCT+AGG | 0.566264 | 4_4:+54823391 | None:intergenic |
| ACTAGATCTTTCTCAAACAC+AGG | 0.567197 | 4_4:-54824202 | Msa0688670:CDS |
| TCAAGGTTCTCAAACGTAGC+CGG | 0.567882 | 4_4:-54824281 | Msa0688670:CDS |
| GCTAATACTTCACATTTCAG+AGG | 0.570361 | 4_4:-54823788 | Msa0688670:CDS |
| TCATAGTAGTCCCTCTCACC+AGG | 0.572281 | 4_4:-54825347 | Msa0688670:intron |
| CAAATGAAGCAAGTTCAAGA+TGG | 0.575876 | 4_4:-54823745 | Msa0688670:CDS |
| AAATGATAGGTGCAGGACCA+AGG | 0.580181 | 4_4:-54823347 | Msa0688670:CDS |
| GAGGGACTACTATGACTATG+AGG | 0.581362 | 4_4:+54825355 | None:intergenic |
| GAATCCAATGAAGGTAGGCA+AGG | 0.585447 | 4_4:+54823583 | None:intergenic |
| AAGAGATTGAAGATGAAAGG+AGG | 0.590101 | 4_4:-54824044 | Msa0688670:CDS |
| AGCTGTAGTTCAATCAGTCA+AGG | 0.591551 | 4_4:-54824067 | Msa0688670:CDS |
| AATGATAGGTGCAGGACCAA+GGG | 0.594126 | 4_4:-54823346 | Msa0688670:CDS |
| TATGACTATGAGGAGGCTCA+TGG | 0.595092 | 4_4:+54825365 | None:intergenic |
| ATGAGGAGGCTCATGGTGGT+GGG | 0.595906 | 4_4:+54825372 | None:intergenic |
| AAGAAAAGTACCTGGTGAGA+GGG | 0.598007 | 4_4:+54825337 | None:intergenic |
| CAAGAAAAGTACCTGGTGAG+AGG | 0.598348 | 4_4:+54825336 | None:intergenic |
| GGAAATCAAGTGAAATTGGA+AGG | 0.599065 | 4_4:-54823438 | Msa0688670:CDS |
| TCTTCTTGTTGACACACACA+CGG | 0.600674 | 4_4:-54825695 | None:intergenic |
| TTCTATTATGCATAATAGTG+CGG | 0.602383 | 4_4:-54823845 | Msa0688670:CDS |
| TTTGCCGAGGAAGCTTCCGT+TGG | 0.615175 | 4_4:-54823523 | Msa0688670:CDS |
| GAAAGGAATCCAATGAAGGT+AGG | 0.616541 | 4_4:+54823578 | None:intergenic |
| AAGGGAAGAAGGAATAATGG+TGG | 0.618908 | 4_4:-54825572 | Msa0688670:CDS |
| CAAGCATCAGTTGTTCAGCA+CGG | 0.633336 | 4_4:-54824700 | Msa0688670:CDS |
| GTCATCCAGAGAGTTAGTCA+AGG | 0.646355 | 4_4:-54824298 | Msa0688670:CDS |
| TGAGCTAAGGCAATTAGAAG+GGG | 0.649817 | 4_4:+54824636 | None:intergenic |
| ATATCCTGAGAGTATTTGCA+GGG | 0.650780 | 4_4:-54823254 | Msa0688670:CDS |
| AATCCAATGAAGGTAGGCAA+GGG | 0.653423 | 4_4:+54823584 | None:intergenic |
| GAAGTGAAGTCTTTGTTACG+TGG | 0.664790 | 4_4:-54823970 | Msa0688670:CDS |
| TCAACAAGTCTCCAAGTGGG+TGG | 0.665483 | 4_4:+54825490 | None:intergenic |
| AAAGTCAACAAGTCTCCAAG+TGG | 0.666077 | 4_4:+54825486 | None:intergenic |
| AAGTCAACAAGTCTCCAAGT+GGG | 0.688185 | 4_4:+54825487 | None:intergenic |
| GGACTACTATGACTATGAGG+AGG | 0.700817 | 4_4:+54825358 | None:intergenic |
| GACTATGAGGAGGCTCATGG+TGG | 0.712982 | 4_4:+54825368 | None:intergenic |
| CATCCTGTTCTTCAAGACGC+CGG | 0.714018 | 4_4:+54824262 | None:intergenic |
| TCTACTAACAAATTACCTAG+GGG | 0.744257 | 4_4:-54823136 | Msa0688670:CDS |
| GTTTGAACAGAAAAGGACTG+CGG | 0.744270 | 4_4:-54823491 | Msa0688670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTAATGACATTTT+TGG | - | chr4_4:54823328-54823347 | Msa0688670:CDS | 10.0% |
| !! | AGAATGAAATAAATTTGAAT+AGG | - | chr4_4:54823626-54823645 | Msa0688670:CDS | 15.0% |
| !!! | TCTTTTTGATTAAATTCTAA+GGG | - | chr4_4:54825586-54825605 | Msa0688670:CDS | 15.0% |
| !! | AAACAGAAATTACCAATTAT+AGG | + | chr4_4:54823415-54823434 | None:intergenic | 20.0% |
| !! | AGTTCTATATATCAATTAAG+AGG | - | chr4_4:54823470-54823489 | Msa0688670:CDS | 20.0% |
| !! | GTTCTATATATCAATTAAGA+GGG | - | chr4_4:54823471-54823490 | Msa0688670:CDS | 20.0% |
| !! | ATTCTTTAACATCAACATTA+GGG | + | chr4_4:54823611-54823630 | None:intergenic | 20.0% |
| !! | AGTAAAAGACAATACATTTA+TGG | - | chr4_4:54825504-54825523 | Msa0688670:CDS | 20.0% |
| !!! | CTCTTTTTGATTAAATTCTA+AGG | - | chr4_4:54825585-54825604 | Msa0688670:CDS | 20.0% |
| !!! | CTTTTTGATTAAATTCTAAG+GGG | - | chr4_4:54825587-54825606 | Msa0688670:CDS | 20.0% |
| !!! | AATCACATTGTAATTTTACA+TGG | - | chr4_4:54825659-54825678 | Msa0688670:five_prime_UTR | 20.0% |
| !!! | TCAAAATTTCAAGTTGAAGA+TGG | - | chr4_4:54822997-54823016 | Msa0688670:three_prime_UTR | 25.0% |
| ! | AGAAAAATGTATGGAGAAAA+GGG | - | chr4_4:54823027-54823046 | Msa0688670:exon | 25.0% |
| ! | ATTCTTCTGATGAAAAATCA+AGG | + | chr4_4:54823559-54823578 | None:intergenic | 25.0% |
| ! | CATTCTTTAACATCAACATT+AGG | + | chr4_4:54823612-54823631 | None:intergenic | 25.0% |
| ! | AAAGGAAGAACACAATTATA+TGG | + | chr4_4:54823719-54823738 | None:intergenic | 25.0% |
| ! | AAACATTAATTCCTAAAGTC+AGG | - | chr4_4:54823765-54823784 | Msa0688670:CDS | 25.0% |
| !!! | ATATTTTGAATTTCAACTGC+TGG | - | chr4_4:54823837-54823856 | Msa0688670:CDS | 25.0% |
| ! | TAAACTTCTTGAGATTCAAA+TGG | + | chr4_4:54824033-54824052 | None:intergenic | 25.0% |
| !!! | GAAGCATTAAAATTGATTTG+AGG | - | chr4_4:54824131-54824150 | Msa0688670:CDS | 25.0% |
| !! | AAAAGTGTATGTAAACTAGA+TGG | - | chr4_4:54824216-54824235 | Msa0688670:CDS | 25.0% |
| !! | ACACATTCATCTTTTTATAC+CGG | + | chr4_4:54824271-54824290 | None:intergenic | 25.0% |
| !!! | TGTGTTATTTTTCGTAAAAC+AGG | - | chr4_4:54824286-54824305 | Msa0688670:CDS | 25.0% |
| ! | AGAAAAGAAAATGAATAAGC+AGG | - | chr4_4:54824454-54824473 | Msa0688670:intron | 25.0% |
| ! | TCGAAAGAGAAAAAAAAGAA+AGG | - | chr4_4:54824684-54824703 | Msa0688670:CDS | 25.0% |
| !! | AAAAAAAGAAAGGATCCTTT+TGG | - | chr4_4:54824694-54824713 | Msa0688670:CDS | 25.0% |
| ! | TTCTATTATGCATAATAGTG+CGG | - | chr4_4:54824772-54824791 | Msa0688670:intron | 25.0% |
| ! | AATTTCCTTGACTTCTTTAA+TGG | + | chr4_4:54825011-54825030 | None:intergenic | 25.0% |
| !! | AATCAAAAAGAGCTTTTACT+AGG | + | chr4_4:54825577-54825596 | None:intergenic | 25.0% |
| ! | ATGTGATTCTATTCTACAAA+AGG | + | chr4_4:54825647-54825666 | None:intergenic | 25.0% |
| !! | TGTAATTTTACATGGTTAGA+TGG | - | chr4_4:54825667-54825686 | Msa0688670:five_prime_UTR | 25.0% |
| GGAAAGAAGAGAAAAATGTA+TGG | - | chr4_4:54823018-54823037 | Msa0688670:three_prime_UTR | 30.0% | |
| GAGAAAAATGTATGGAGAAA+AGG | - | chr4_4:54823026-54823045 | Msa0688670:exon | 30.0% | |
| !! | TACAAAACAAGAAAAGTACC+TGG | + | chr4_4:54823291-54823310 | None:intergenic | 30.0% |
| ! | TGTTTTCAGATGCCTATAAT+TGG | - | chr4_4:54823400-54823419 | Msa0688670:CDS | 30.0% |
| !! | TCTGTTTCAGCTTTAAAAGT+TGG | - | chr4_4:54823428-54823447 | Msa0688670:CDS | 30.0% |
| TAGGGATAGTTAATTCGAAA+AGG | + | chr4_4:54823593-54823612 | None:intergenic | 30.0% | |
| GAACACAATTATATGGACAT+TGG | + | chr4_4:54823712-54823731 | None:intergenic | 30.0% | |
| AGTCTTTCAGCTATCAATAA+AGG | + | chr4_4:54823737-54823756 | None:intergenic | 30.0% | |
| TCAAACATAATCCTGACTTT+AGG | + | chr4_4:54823779-54823798 | None:intergenic | 30.0% | |
| TTCATTAAAAATGCCTCAGA+AGG | + | chr4_4:54824189-54824208 | None:intergenic | 30.0% | |
| !! | TCTGAGGCATTTTTAATGAA+TGG | - | chr4_4:54824189-54824208 | Msa0688670:CDS | 30.0% |
| ! | TCTTTTTATACCGGATGAAA+GGG | + | chr4_4:54824262-54824281 | None:intergenic | 30.0% |
| ! | ATCTTTTTATACCGGATGAA+AGG | + | chr4_4:54824263-54824282 | None:intergenic | 30.0% |
| GAAAATGAATAAGCAGGAAA+TGG | - | chr4_4:54824460-54824479 | Msa0688670:intron | 30.0% | |
| TTCATAATCTCTTACTCCTT+TGG | + | chr4_4:54824741-54824760 | None:intergenic | 30.0% | |
| ATTGGATTCCTTTCAACTAA+AGG | - | chr4_4:54825048-54825067 | Msa0688670:intron | 30.0% | |
| TATTGTCTCCTTTAGTTGAA+AGG | + | chr4_4:54825059-54825078 | None:intergenic | 30.0% | |
| !!! | GTTTTTTTCGACTGTTTAAC+AGG | + | chr4_4:54825430-54825449 | None:intergenic | 30.0% |
| AGTCTACTAACAAATTACCT+AGG | - | chr4_4:54825479-54825498 | Msa0688670:CDS | 30.0% | |
| GTCTACTAACAAATTACCTA+GGG | - | chr4_4:54825480-54825499 | Msa0688670:CDS | 30.0% | |
| TCTACTAACAAATTACCTAG+GGG | - | chr4_4:54825481-54825500 | Msa0688670:CDS | 30.0% | |
| GAAAAGGGAAGAAGGAATAA+TGG | - | chr4_4:54823042-54823061 | Msa0688670:exon | 35.0% | |
| ! | GGTGGAAAAGTTGAAACTTT+TGG | - | chr4_4:54823063-54823082 | Msa0688670:CDS | 35.0% |
| !! | TTGAAACTTTTGGAGAAGAG+AGG | - | chr4_4:54823073-54823092 | Msa0688670:CDS | 35.0% |
| ! | AACTCTTGTTGATGAGAAGA+AGG | + | chr4_4:54823157-54823176 | None:intergenic | 35.0% |
| AAATCTCTGTGCTAAACTCT+GGG | - | chr4_4:54823213-54823232 | Msa0688670:CDS | 35.0% | |
| !! | GCTTTAAAAGTTGGTGACTT+TGG | - | chr4_4:54823437-54823456 | Msa0688670:CDS | 35.0% |
| !! | AAAAGTTGGTGACTTTGGTT+TGG | - | chr4_4:54823442-54823461 | Msa0688670:CDS | 35.0% |
| ATCAGTCGACAGAAATTGTT+CGG | - | chr4_4:54823943-54823962 | Msa0688670:CDS | 35.0% | |
| TTGAGCTAAGGCAATTAGAA+GGG | + | chr4_4:54823985-54824004 | None:intergenic | 35.0% | |
| ATTGAGCTAAGGCAATTAGA+AGG | + | chr4_4:54823986-54824005 | None:intergenic | 35.0% | |
| TTCTAATTGCCTTAGCTCAA+TGG | - | chr4_4:54823985-54824004 | Msa0688670:CDS | 35.0% | |
| TACTTACTTCCATTGAGCTA+AGG | + | chr4_4:54823997-54824016 | None:intergenic | 35.0% | |
| ATTTGAGGAAAATCTCCATG+AGG | - | chr4_4:54824146-54824165 | Msa0688670:CDS | 35.0% | |
| TTTGAGGAAAATCTCCATGA+GGG | - | chr4_4:54824147-54824166 | Msa0688670:CDS | 35.0% | |
| ! | GATACTTTTACCCTTTCATC+CGG | - | chr4_4:54824249-54824268 | Msa0688670:CDS | 35.0% |
| ! | AATAGTGAAAGCTCTGATAG+TGG | - | chr4_4:54824391-54824410 | Msa0688670:intron | 35.0% |
| ACTAGATCTTTCTCAAACAC+AGG | - | chr4_4:54824415-54824434 | Msa0688670:intron | 35.0% | |
| AGGAAGAGATTGAAGATGAA+AGG | - | chr4_4:54824570-54824589 | Msa0688670:intron | 35.0% | |
| AAGAGATTGAAGATGAAAGG+AGG | - | chr4_4:54824573-54824592 | Msa0688670:intron | 35.0% | |
| CATCACACAAATTCTCCAAA+AGG | + | chr4_4:54824712-54824731 | None:intergenic | 35.0% | |
| ! | TTGTGTGATGATTTTGCCAA+AGG | - | chr4_4:54824722-54824741 | Msa0688670:CDS | 35.0% |
| TATGCATAATAGTGCGGATA+AGG | - | chr4_4:54824778-54824797 | Msa0688670:intron | 35.0% | |
| ! | TTAATGGTGATAGCCTTGAT+AGG | - | chr4_4:54824807-54824826 | Msa0688670:intron | 35.0% |
| ! | TGTGAAGTATTAGCCTATCA+AGG | + | chr4_4:54824823-54824842 | None:intergenic | 35.0% |
| GCTAATACTTCACATTTCAG+AGG | - | chr4_4:54824829-54824848 | Msa0688670:intron | 35.0% | |
| CAAATGAAGCAAGTTCAAGA+TGG | - | chr4_4:54824872-54824891 | Msa0688670:intron | 35.0% | |
| AAGCAAGTTCAAGATGGTAT+TGG | - | chr4_4:54824878-54824897 | Msa0688670:intron | 35.0% | |
| CAACTATTGAATGTGTCTCT+AGG | + | chr4_4:54824913-54824932 | None:intergenic | 35.0% | |
| TCCTTGACTTCTTTAATGGA+GGG | + | chr4_4:54825007-54825026 | None:intergenic | 35.0% | |
| TTCCTTGACTTCTTTAATGG+AGG | + | chr4_4:54825008-54825027 | None:intergenic | 35.0% | |
| AGTTGAAAGGAATCCAATGA+AGG | + | chr4_4:54825046-54825065 | None:intergenic | 35.0% | |
| !! | TTCAAACTTGTTGGTACCAA+CGG | + | chr4_4:54825113-54825132 | None:intergenic | 35.0% |
| ! | CCTTTTCTGTTCAAACTTGT+TGG | + | chr4_4:54825122-54825141 | None:intergenic | 35.0% |
| CCAACAAGTTTGAACAGAAA+AGG | - | chr4_4:54825119-54825138 | Msa0688670:intron | 35.0% | |
| ! | ACTTAACAAGTGCTTTGTTG+AGG | - | chr4_4:54825156-54825175 | Msa0688670:intron | 35.0% |
| ! | CTTAACAAGTGCTTTGTTGA+GGG | - | chr4_4:54825157-54825176 | Msa0688670:intron | 35.0% |
| ! | TTAACAAGTGCTTTGTTGAG+GGG | - | chr4_4:54825158-54825177 | Msa0688670:intron | 35.0% |
| GGAAATCAAGTGAAATTGGA+AGG | - | chr4_4:54825179-54825198 | Msa0688670:intron | 35.0% | |
| ! | TCACACAAAGTTGATTCTCT+AGG | + | chr4_4:54825229-54825248 | None:intergenic | 35.0% |
| !!! | ATTTTCTGGTGGACTTTGTA+CGG | + | chr4_4:54825254-54825273 | None:intergenic | 35.0% |
| AAAGTCCACCAGAAAATGAT+AGG | - | chr4_4:54825257-54825276 | Msa0688670:intron | 35.0% | |
| GTGACATGAATTAATTCCCT+TGG | + | chr4_4:54825290-54825309 | None:intergenic | 35.0% | |
| TGTTTCCAACTAACTGTTCA+AGG | + | chr4_4:54825315-54825334 | None:intergenic | 35.0% | |
| AACAGTTCTTTGTCATCAGA+AGG | - | chr4_4:54825331-54825350 | Msa0688670:intron | 35.0% | |
| TTTGTCATCAGAAGGTGATA+AGG | - | chr4_4:54825339-54825358 | Msa0688670:intron | 35.0% | |
| !! | TATATCCTGAGAGTATTTGC+AGG | - | chr4_4:54825362-54825381 | Msa0688670:CDS | 35.0% |
| !! | ATATCCTGAGAGTATTTGCA+GGG | - | chr4_4:54825363-54825382 | Msa0688670:CDS | 35.0% |
| CATTCTGCAGTTACAGTTAA+GGG | - | chr4_4:54825400-54825419 | Msa0688670:CDS | 35.0% | |
| AGACTGAGACATGTTGAAAT+CGG | + | chr4_4:54825464-54825483 | None:intergenic | 35.0% | |
| TGTATGGAGAAAAGGGAAGA+AGG | - | chr4_4:54823034-54823053 | Msa0688670:exon | 40.0% | |
| AAGGGAAGAAGGAATAATGG+TGG | - | chr4_4:54823045-54823064 | Msa0688670:CDS | 40.0% | |
| !! | AAACTTTTGGAGAAGAGAGG+AGG | - | chr4_4:54823076-54823095 | Msa0688670:CDS | 40.0% |
| AAGTCAACAAGTCTCCAAGT+GGG | + | chr4_4:54823133-54823152 | None:intergenic | 40.0% | |
| AAAGTCAACAAGTCTCCAAG+TGG | + | chr4_4:54823134-54823153 | None:intergenic | 40.0% | |
| !!! | GCAGAGAGTGTTTTTGAAGT+GGG | + | chr4_4:54823190-54823209 | None:intergenic | 40.0% |
| !!! | TGCAGAGAGTGTTTTTGAAG+TGG | + | chr4_4:54823191-54823210 | None:intergenic | 40.0% |
| GAAATCTCTGTGCTAAACTC+TGG | - | chr4_4:54823212-54823231 | Msa0688670:CDS | 40.0% | |
| !! | AAGAAAAGTACCTGGTGAGA+GGG | + | chr4_4:54823283-54823302 | None:intergenic | 40.0% |
| TGAGCTAAGGCAATTAGAAG+GGG | + | chr4_4:54823984-54824003 | None:intergenic | 40.0% | |
| AGCTGTAGTTCAATCAGTCA+AGG | - | chr4_4:54824550-54824569 | Msa0688670:intron | 40.0% | |
| GAAGTGAAGTCTTTGTTACG+TGG | - | chr4_4:54824647-54824666 | Msa0688670:CDS | 40.0% | |
| TACTTCACATTTCAGAGGCT+TGG | - | chr4_4:54824834-54824853 | Msa0688670:intron | 40.0% | |
| CCTTGACTTCTTTAATGGAG+GGG | + | chr4_4:54825006-54825025 | None:intergenic | 40.0% | |
| AATCCAATGAAGGTAGGCAA+GGG | + | chr4_4:54825036-54825055 | None:intergenic | 40.0% | |
| GAAAGGAATCCAATGAAGGT+AGG | + | chr4_4:54825042-54825061 | None:intergenic | 40.0% | |
| ! | TTCACCTCATAATTTTGCCG+AGG | - | chr4_4:54825081-54825100 | Msa0688670:intron | 40.0% |
| GTTTGAACAGAAAAGGACTG+CGG | - | chr4_4:54825126-54825145 | Msa0688670:intron | 40.0% | |
| GAGGGGAAATCAAGTGAAAT+TGG | - | chr4_4:54825175-54825194 | Msa0688670:intron | 40.0% | |
| CCTTAACTGTAACTGCAGAA+TGG | + | chr4_4:54825402-54825421 | None:intergenic | 40.0% | |
| CCATTCTGCAGTTACAGTTA+AGG | - | chr4_4:54825399-54825418 | Msa0688670:CDS | 40.0% | |
| GACTGAGACATGTTGAAATC+GGG | + | chr4_4:54825463-54825482 | None:intergenic | 40.0% | |
| ! | GTATTGTCTTTTACTCCCCT+AGG | + | chr4_4:54825499-54825518 | None:intergenic | 40.0% |
| TATGACTATGAGGAGGCTCA+TGG | + | chr4_4:54823255-54823274 | None:intergenic | 45.0% | |
| GGACTACTATGACTATGAGG+AGG | + | chr4_4:54823262-54823281 | None:intergenic | 45.0% | |
| GAGGGACTACTATGACTATG+AGG | + | chr4_4:54823265-54823284 | None:intergenic | 45.0% | |
| !! | CAAGAAAAGTACCTGGTGAG+AGG | + | chr4_4:54823284-54823303 | None:intergenic | 45.0% |
| GTACGTCAGCTCTCTTCATA+AGG | + | chr4_4:54823679-54823698 | None:intergenic | 45.0% | |
| CAAGCATCAGTTGTTCAGCA+CGG | - | chr4_4:54823917-54823936 | Msa0688670:CDS | 45.0% | |
| CATCGACGATAAATCCCTCA+TGG | + | chr4_4:54824164-54824183 | None:intergenic | 45.0% | |
| TATCGTCGATGATCCTTCTG+AGG | - | chr4_4:54824173-54824192 | Msa0688670:CDS | 45.0% | |
| GTCATCCAGAGAGTTAGTCA+AGG | - | chr4_4:54824319-54824338 | Msa0688670:intron | 45.0% | |
| GAGAACCTTGACTAACTCTC+TGG | + | chr4_4:54824327-54824346 | None:intergenic | 45.0% | |
| TCAAGGTTCTCAAACGTAGC+CGG | - | chr4_4:54824336-54824355 | Msa0688670:intron | 45.0% | |
| AGAAAGCCTGTATCAGAAGC+TGG | - | chr4_4:54824610-54824629 | Msa0688670:intron | 45.0% | |
| GCGGATAAGGATCGCATTAA+TGG | - | chr4_4:54824791-54824810 | Msa0688670:intron | 45.0% | |
| CCCCTCCATTAAAGAAGTCA+AGG | - | chr4_4:54825003-54825022 | Msa0688670:intron | 45.0% | |
| GAATCCAATGAAGGTAGGCA+AGG | + | chr4_4:54825037-54825056 | None:intergenic | 45.0% | |
| GCTTCCTCGGCAAAATTATG+AGG | + | chr4_4:54825088-54825107 | None:intergenic | 45.0% | |
| ! | CTGCACCTATCATTTTCTGG+TGG | + | chr4_4:54825265-54825284 | None:intergenic | 45.0% |
| CACCAGAAAATGATAGGTGC+AGG | - | chr4_4:54825263-54825282 | Msa0688670:intron | 45.0% | |
| ! | GTCCTGCACCTATCATTTTC+TGG | + | chr4_4:54825268-54825287 | None:intergenic | 45.0% |
| AAATGATAGGTGCAGGACCA+AGG | - | chr4_4:54825270-54825289 | Msa0688670:intron | 45.0% | |
| AATGATAGGTGCAGGACCAA+GGG | - | chr4_4:54825271-54825290 | Msa0688670:intron | 45.0% | |
| CACAGCCTTGAACAGTTAGT+TGG | - | chr4_4:54825307-54825326 | Msa0688670:intron | 45.0% | |
| TCTTCCCTGCAAATACTCTC+AGG | + | chr4_4:54825370-54825389 | None:intergenic | 45.0% | |
| TGGCAAAACTGCTTGAAGCA+AGG | - | chr4_4:54825524-54825543 | Msa0688670:CDS | 45.0% | |
| ACTGCTTGAAGCAAGGTTAG+AGG | - | chr4_4:54825531-54825550 | Msa0688670:CDS | 45.0% | |
| !! | AAAAAAAAATTAATTGAAAA+TGG | + | chr4_4:54823315-54823334 | None:intergenic | 5.0% |
| TTGGAGAAGAGAGGAGGAAG+AGG | - | chr4_4:54823082-54823101 | Msa0688670:CDS | 50.0% | |
| AGAAGAGAGGAGGAAGAGGA+AGG | - | chr4_4:54823086-54823105 | Msa0688670:CDS | 50.0% | |
| TCAACAAGTCTCCAAGTGGG+TGG | + | chr4_4:54823130-54823149 | None:intergenic | 50.0% | |
| TCATAGTAGTCCCTCTCACC+AGG | - | chr4_4:54823270-54823289 | Msa0688670:CDS | 50.0% | |
| ! | AGCAGATGCTGGCTGTATTG+CGG | + | chr4_4:54823876-54823895 | None:intergenic | 50.0% |
| CATCCTGTTCTTCAAGACGC+CGG | + | chr4_4:54824358-54824377 | None:intergenic | 50.0% | |
| CACTAGCCAGCTTCTGATAC+AGG | + | chr4_4:54824619-54824638 | None:intergenic | 50.0% | |
| TCACCCTTGCCTACCTTCAT+TGG | - | chr4_4:54825030-54825049 | Msa0688670:intron | 50.0% | |
| GTTCAACACCACCACCCACT+TGG | - | chr4_4:54823116-54823135 | Msa0688670:CDS | 55.0% | |
| ACAAGTCTCCAAGTGGGTGG+TGG | + | chr4_4:54823127-54823146 | None:intergenic | 55.0% | |
| ATGAGGAGGCTCATGGTGGT+GGG | + | chr4_4:54823248-54823267 | None:intergenic | 55.0% | |
| TATGAGGAGGCTCATGGTGG+TGG | + | chr4_4:54823249-54823268 | None:intergenic | 55.0% | |
| GACTATGAGGAGGCTCATGG+TGG | + | chr4_4:54823252-54823271 | None:intergenic | 55.0% | |
| CTCGAGTCTCTAGCAGATGC+TGG | + | chr4_4:54823887-54823906 | None:intergenic | 55.0% | |
| TAGCCGGCGTCTTGAAGAAC+AGG | - | chr4_4:54824352-54824371 | Msa0688670:intron | 55.0% | |
| TTTGCCGAGGAAGCTTCCGT+TGG | - | chr4_4:54825094-54825113 | Msa0688670:intron | 55.0% | |
| GGTACCAACGGAAGCTTCCT+CGG | + | chr4_4:54825101-54825120 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 54822937 | 54825702 | 54822937 | ID=Msa0688670;Name=Msa0688670 |
| chr4_4 | mRNA | 54822937 | 54825702 | 54822937 | ID=Msa0688670-mRNA-1;Parent=Msa0688670;Name=Msa0688670-mRNA-1;_AED=0.19;_eAED=0.19;_QI=79|1|1|1|1|1|3|108|562 |
| chr4_4 | exon | 54822937 | 54824331 | 54822937 | ID=Msa0688670-mRNA-1:exon:14489;Parent=Msa0688670-mRNA-1 |
| chr4_4 | exon | 54824630 | 54824755 | 54824630 | ID=Msa0688670-mRNA-1:exon:14488;Parent=Msa0688670-mRNA-1 |
| chr4_4 | exon | 54825348 | 54825702 | 54825348 | ID=Msa0688670-mRNA-1:exon:14487;Parent=Msa0688670-mRNA-1 |
| chr4_4 | five_prime_UTR | 54825624 | 54825702 | 54825624 | ID=Msa0688670-mRNA-1:five_prime_utr;Parent=Msa0688670-mRNA-1 |
| chr4_4 | CDS | 54825348 | 54825623 | 54825348 | ID=Msa0688670-mRNA-1:cds;Parent=Msa0688670-mRNA-1 |
| chr4_4 | CDS | 54824630 | 54824755 | 54824630 | ID=Msa0688670-mRNA-1:cds;Parent=Msa0688670-mRNA-1 |
| chr4_4 | CDS | 54823045 | 54824331 | 54823045 | ID=Msa0688670-mRNA-1:cds;Parent=Msa0688670-mRNA-1 |
| chr4_4 | three_prime_UTR | 54822937 | 54823044 | 54822937 | ID=Msa0688670-mRNA-1:three_prime_utr;Parent=Msa0688670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
