Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718350 | XP_024639264.1 | 99.313 | 291 | 2 | 0 | 1 | 291 | 1 | 291 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718350 | sp|Q7DNC3|MPCP1_ARATH | 65.753 | 292 | 99 | 1 | 1 | 291 | 1 | 292 | 1.11e-149 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718350 | A0A396HM95 | 99.313 | 291 | 2 | 0 | 1 | 291 | 1 | 291 | 0.0 | 597 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0105340 | Msa0718350 | 0.811492 | 6.813661e-51 | -8.615850e-47 |
| Msa0621890 | Msa0718350 | 0.814682 | 1.360827e-51 | -8.615850e-47 |
| Msa0622390 | Msa0718350 | 0.800606 | 1.332021e-48 | -8.615850e-47 |
| Msa0626230 | Msa0718350 | 0.835689 | 1.449614e-56 | -8.615850e-47 |
| Msa0653710 | Msa0718350 | 0.809034 | 2.309477e-50 | -8.615850e-47 |
| Msa0697140 | Msa0718350 | 0.814417 | 1.557500e-51 | -8.615850e-47 |
| Msa0718350 | Msa0722930 | 0.813949 | 1.975065e-51 | -8.615850e-47 |
| Msa0718350 | Msa0723140 | 0.816516 | 5.311746e-52 | -8.615850e-47 |
| Msa0718350 | Msa0792510 | 0.802499 | 5.450166e-49 | -8.615850e-47 |
| Msa0718350 | Msa0801020 | 0.932485 | 7.933039e-95 | -8.615850e-47 |
| Msa0718350 | Msa0839380 | 0.892773 | 1.165308e-74 | -8.615850e-47 |
| Msa0718350 | Msa0843280 | 0.805030 | 1.624916e-49 | -8.615850e-47 |
| Msa0718350 | Msa0870630 | 0.802121 | 6.520631e-49 | -8.615850e-47 |
| Msa0718350 | Msa0887000 | 0.810380 | 1.186136e-50 | -8.615850e-47 |
| Msa0718350 | Msa0887070 | 0.811068 | 8.423163e-51 | -8.615850e-47 |
| Msa0718350 | Msa0903730 | 0.843169 | 1.653163e-58 | -8.615850e-47 |
| Msa0718350 | Msa0951720 | 0.837244 | 5.827001e-57 | -8.615850e-47 |
| Msa0718350 | Msa0961420 | -0.803633 | 3.176518e-49 | -8.615850e-47 |
| Msa0718350 | Msa0965520 | 0.806551 | 7.786910e-50 | -8.615850e-47 |
| Msa0718350 | Msa0973230 | 0.802539 | 5.348665e-49 | -8.615850e-47 |
| Msa0718350 | Msa0988500 | 0.818997 | 1.463262e-52 | -8.615850e-47 |
| Msa0718350 | Msa1008490 | 0.809160 | 2.170642e-50 | -8.615850e-47 |
| Msa0718350 | Msa1032350 | 0.817637 | 2.974459e-52 | -8.615850e-47 |
| Msa0718350 | Msa1036390 | 0.804101 | 2.538451e-49 | -8.615850e-47 |
| Msa0718350 | Msa1072350 | 0.805576 | 1.248594e-49 | -8.615850e-47 |
| Msa0718350 | Msa1118140 | 0.816264 | 6.049665e-52 | -8.615850e-47 |
| Msa0718350 | Msa1201990 | 0.800414 | 1.457213e-48 | -8.615850e-47 |
| Msa0718350 | Msa1220230 | 0.805814 | 1.113194e-49 | -8.615850e-47 |
| Msa0718350 | Msa1265960 | 0.801375 | 9.275942e-49 | -8.615850e-47 |
| Msa0718350 | Msa1329990 | 0.800465 | 1.423312e-48 | -8.615850e-47 |
| Msa0718350 | Msa1373950 | 0.801147 | 1.032597e-48 | -8.615850e-47 |
| Msa0718350 | Msa1386520 | 0.824727 | 6.901501e-54 | -8.615850e-47 |
| Msa0718350 | Msa1387090 | 0.802068 | 6.686753e-49 | -8.615850e-47 |
| Msa0718350 | Msa1397540 | 0.807421 | 5.095713e-50 | -8.615850e-47 |
| Msa0718350 | Msa1431000 | 0.801863 | 7.365683e-49 | -8.615850e-47 |
| Msa0718350 | Msa1456810 | 0.806728 | 7.144857e-50 | -8.615850e-47 |
| Msa0411000 | Msa0718350 | 0.802328 | 5.909979e-49 | -8.615850e-47 |
| Msa0419620 | Msa0718350 | -0.823685 | 1.212851e-53 | -8.615850e-47 |
| Msa0252180 | Msa0718350 | 0.810179 | 1.311066e-50 | -8.615850e-47 |
| Msa0293080 | Msa0718350 | 0.807814 | 4.206500e-50 | -8.615850e-47 |
| Msa0511720 | Msa0718350 | -0.808907 | 2.458849e-50 | -8.615850e-47 |
| Msa0582110 | Msa0718350 | 0.802930 | 4.441284e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718350 | MtrunA17_Chr5g0407451 | 99.313 | 291 | 2 | 0 | 1 | 291 | 1 | 291 | 0.0 | 597 |
| Msa0718350 | MtrunA17_Chr4g0051841 | 62.411 | 282 | 100 | 2 | 16 | 291 | 24 | 305 | 4.20e-130 | 372 |
| Msa0718350 | MtrunA17_Chr8g0385891 | 49.296 | 284 | 140 | 1 | 12 | 291 | 64 | 347 | 7.86e-100 | 296 |
| Msa0718350 | MtrunA17_Chr7g0251981 | 48.789 | 289 | 144 | 1 | 7 | 291 | 68 | 356 | 6.54e-99 | 295 |
| Msa0718350 | MtrunA17_Chr6g0461981 | 47.857 | 280 | 142 | 1 | 16 | 291 | 58 | 337 | 3.06e-95 | 285 |
| Msa0718350 | MtrunA17_Chr5g0431531 | 27.143 | 280 | 181 | 5 | 22 | 286 | 40 | 311 | 6.24e-20 | 88.2 |
| Msa0718350 | MtrunA17_Chr4g0028531 | 25.163 | 306 | 193 | 11 | 3 | 285 | 7 | 299 | 8.06e-16 | 76.3 |
| Msa0718350 | MtrunA17_Chr5g0396801 | 25.526 | 333 | 195 | 12 | 1 | 289 | 16 | 339 | 1.36e-13 | 70.1 |
| Msa0718350 | MtrunA17_Chr7g0240341 | 26.437 | 174 | 120 | 2 | 22 | 187 | 135 | 308 | 1.76e-13 | 69.7 |
| Msa0718350 | MtrunA17_Chr8g0385571 | 25.143 | 175 | 121 | 4 | 23 | 188 | 324 | 497 | 9.63e-13 | 68.2 |
| Msa0718350 | MtrunA17_Chr7g0269701 | 29.714 | 175 | 110 | 4 | 31 | 193 | 133 | 306 | 1.48e-12 | 67.0 |
| Msa0718350 | MtrunA17_Chr5g0423111 | 27.807 | 187 | 117 | 5 | 34 | 204 | 132 | 316 | 2.61e-12 | 66.2 |
| Msa0718350 | MtrunA17_Chr8g0347451 | 24.850 | 334 | 197 | 10 | 3 | 291 | 31 | 355 | 3.08e-12 | 66.2 |
| Msa0718350 | MtrunA17_Chr7g0241521 | 25.131 | 191 | 130 | 3 | 12 | 195 | 117 | 301 | 5.10e-12 | 65.1 |
| Msa0718350 | MtrunA17_Chr4g0008061 | 29.348 | 184 | 104 | 5 | 27 | 188 | 21 | 200 | 7.76e-12 | 64.7 |
| Msa0718350 | MtrunA17_Chr3g0131501 | 23.729 | 177 | 122 | 4 | 22 | 187 | 300 | 474 | 7.85e-12 | 65.5 |
| Msa0718350 | MtrunA17_Chr8g0372531 | 28.877 | 187 | 101 | 9 | 33 | 193 | 125 | 305 | 9.22e-12 | 64.7 |
| Msa0718350 | MtrunA17_Chr1g0195101 | 27.746 | 173 | 112 | 4 | 33 | 193 | 132 | 303 | 1.57e-11 | 63.9 |
| Msa0718350 | MtrunA17_Chr3g0103681 | 26.708 | 161 | 110 | 2 | 36 | 189 | 135 | 294 | 1.63e-11 | 63.5 |
| Msa0718350 | MtrunA17_Chr7g0252401 | 25.000 | 180 | 122 | 4 | 20 | 187 | 295 | 473 | 3.70e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718350 | AT2G17270.1 | 65.753 | 292 | 99 | 1 | 1 | 291 | 1 | 292 | 1.13e-150 | 424 |
| Msa0718350 | AT3G48850.1 | 48.410 | 283 | 142 | 1 | 13 | 291 | 63 | 345 | 8.26e-102 | 302 |
| Msa0718350 | AT5G14040.1 | 50.177 | 283 | 137 | 1 | 13 | 291 | 74 | 356 | 9.45e-101 | 300 |
| Msa0718350 | AT1G07030.1 | 26.786 | 280 | 183 | 6 | 22 | 286 | 41 | 313 | 5.58e-19 | 85.9 |
| Msa0718350 | AT5G01340.1 | 27.368 | 285 | 177 | 9 | 21 | 285 | 21 | 295 | 2.34e-18 | 84.0 |
| Msa0718350 | AT2G30160.1 | 26.578 | 301 | 185 | 8 | 9 | 286 | 31 | 318 | 6.73e-18 | 82.8 |
| Msa0718350 | AT3G53940.1 | 28.161 | 174 | 117 | 2 | 22 | 187 | 181 | 354 | 1.26e-15 | 76.6 |
| Msa0718350 | AT2G37890.1 | 27.586 | 174 | 118 | 2 | 22 | 187 | 153 | 326 | 1.36e-14 | 73.6 |
| Msa0718350 | AT3G20240.1 | 24.742 | 291 | 186 | 9 | 22 | 286 | 53 | 336 | 1.72e-12 | 67.4 |
| Msa0718350 | AT5G66380.1 | 27.660 | 188 | 106 | 7 | 33 | 196 | 122 | 303 | 3.16e-12 | 66.2 |
| Msa0718350 | AT3G54110.1 | 22.905 | 179 | 131 | 1 | 22 | 193 | 119 | 297 | 4.29e-12 | 65.9 |
| Msa0718350 | AT4G01100.3 | 26.887 | 212 | 121 | 6 | 11 | 193 | 88 | 294 | 5.04e-12 | 65.5 |
| Msa0718350 | AT4G01100.1 | 27.830 | 212 | 119 | 8 | 11 | 193 | 138 | 344 | 6.36e-12 | 65.9 |
| Msa0718350 | AT4G01100.2 | 26.887 | 212 | 121 | 6 | 11 | 193 | 152 | 358 | 1.15e-11 | 65.1 |
| Msa0718350 | AT4G03115.1 | 25.877 | 228 | 150 | 6 | 16 | 239 | 37 | 249 | 2.60e-11 | 63.5 |
| Msa0718350 | AT5G58970.1 | 26.054 | 261 | 154 | 9 | 32 | 265 | 27 | 275 | 3.59e-11 | 63.2 |
| Msa0718350 | AT3G21390.1 | 25.359 | 209 | 126 | 5 | 19 | 198 | 128 | 335 | 4.30e-11 | 63.2 |
| Msa0718350 | AT4G03115.3 | 25.877 | 228 | 150 | 6 | 16 | 239 | 69 | 281 | 4.30e-11 | 63.2 |
| Msa0718350 | AT3G21390.2 | 25.481 | 208 | 125 | 5 | 19 | 197 | 150 | 356 | 4.32e-11 | 63.2 |
| Msa0718350 | AT5G48970.2 | 25.243 | 206 | 119 | 5 | 19 | 193 | 62 | 263 | 6.20e-11 | 62.0 |
| Msa0718350 | AT5G48970.1 | 25.243 | 206 | 119 | 5 | 19 | 193 | 133 | 334 | 7.22e-11 | 62.4 |
| Msa0718350 | AT2G47490.1 | 28.652 | 178 | 112 | 5 | 33 | 197 | 129 | 304 | 8.45e-11 | 62.0 |
Find 79 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATACTGTAATATTTAAT+TGG | 0.125547 | 5_1:-12507059 | None:intergenic |
| CCGTGGACTTGTTCCACTTT+TGG | 0.215295 | 5_1:+12507509 | Msa0718350:CDS |
| CCTAAGAAGTTCCAACAAAA+TGG | 0.233444 | 5_1:+12505762 | None:intergenic |
| AAGACTCCTGGTAAATAAAT+TGG | 0.271424 | 5_1:-12508693 | None:intergenic |
| AAATGGACATAGAGCTAAAT+TGG | 0.273532 | 5_1:-12507285 | None:intergenic |
| GGATGGACAGGCAAGTTCTT+TGG | 0.324400 | 5_1:+12507134 | Msa0718350:CDS |
| GCTCAAGGAGGGTGCAGATT+TGG | 0.325080 | 5_1:+12507164 | Msa0718350:CDS |
| GAGTTCAGTGAAGGAATAAA+TGG | 0.327741 | 5_1:+12505977 | Msa0718350:five_prime_UTR |
| CCAACCAGCAACATTCTAAT+AGG | 0.348096 | 5_1:-12508716 | None:intergenic |
| TCTTCCTATTAGAATGTTGC+TGG | 0.355082 | 5_1:+12508712 | Msa0718350:CDS |
| CCTTCTGCTGCATATACCTT+TGG | 0.377619 | 5_1:-12507371 | None:intergenic |
| TATTATGCCCTTTGCACCAT+TGG | 0.395910 | 5_1:+12506086 | Msa0718350:CDS |
| CTAAGAAGTTCCAACAAAAT+GGG | 0.402286 | 5_1:+12505763 | None:intergenic |
| AAATACTGTAATATTTAATT+GGG | 0.407520 | 5_1:-12507058 | None:intergenic |
| AACCATTGCAAAGTTATAGA+AGG | 0.409895 | 5_1:-12508740 | None:intergenic |
| CATTTGAAGCTGTTAAAGTC+AGG | 0.432003 | 5_1:+12507303 | Msa0718350:CDS |
| AAAAGCCGAGAGTCTTGTTC+TGG | 0.432484 | 5_1:+12508560 | Msa0718350:CDS |
| CGTGCTTTACTACGTTATTG+AGG | 0.441119 | 5_1:+12507084 | Msa0718350:CDS |
| TATGCTAAGGGCATGTTTGA+CGG | 0.461515 | 5_1:+12507344 | Msa0718350:CDS |
| CTGACTTTAACAGCTTCAAA+TGG | 0.463411 | 5_1:-12507302 | None:intergenic |
| GGGAGTTTACTCCAATGTAT+TGG | 0.465784 | 5_1:+12507205 | Msa0718350:CDS |
| TTGTGCGATTCCTCCTTCCA+TGG | 0.468396 | 5_1:-12506048 | None:intergenic |
| GGCTAGCCAATTTATTTACC+AGG | 0.471960 | 5_1:+12508687 | Msa0718350:CDS |
| AACACTGAAGAAAAGGATCA+TGG | 0.480260 | 5_1:+12506022 | Msa0718350:exon |
| CATTCCTCCAATGGTGCAAA+GGG | 0.480811 | 5_1:-12506093 | None:intergenic |
| CCTATTAGAATGTTGCTGGT+TGG | 0.483372 | 5_1:+12508716 | Msa0718350:CDS |
| GTCCTTCTATAACTTTGCAA+TGG | 0.485403 | 5_1:+12508738 | Msa0718350:CDS |
| GTGCTTTACTACGTTATTGA+GGG | 0.486855 | 5_1:+12507085 | Msa0718350:CDS |
| TTCTTTGGCTATGGTGCTCA+AGG | 0.488078 | 5_1:+12507149 | Msa0718350:CDS |
| TGTTTAGCTGGTTATACCGC+TGG | 0.496234 | 5_1:+12508477 | Msa0718350:CDS |
| TATGCCCTTTGCACCATTGG+AGG | 0.515475 | 5_1:+12506089 | Msa0718350:CDS |
| ACAGGCAAGTTCTTTGGCTA+TGG | 0.516450 | 5_1:+12507140 | Msa0718350:CDS |
| GAAAAGGATCATGGCGGCCA+TGG | 0.517987 | 5_1:+12506031 | Msa0718350:exon |
| AGCACAACCTAGTTATGCTA+AGG | 0.519278 | 5_1:+12507331 | Msa0718350:CDS |
| TTGGCTATGGTGCTCAAGGA+GGG | 0.525340 | 5_1:+12507153 | Msa0718350:CDS |
| CTAGGTGTGACATGTTTAGC+TGG | 0.525462 | 5_1:+12508465 | Msa0718350:CDS |
| GTCCTGTGGAAAGGATGGAC+AGG | 0.530212 | 5_1:+12507122 | Msa0718350:CDS |
| TGAGGCAATTAACATTAAGC+AGG | 0.530480 | 5_1:+12505802 | Msa0718350:five_prime_UTR |
| GAAGCTACTATATTATCAGC+AGG | 0.533613 | 5_1:-12508525 | None:intergenic |
| TTAACTTTCAAAACATCAAG+AGG | 0.535490 | 5_1:-12506149 | None:intergenic |
| GGAATGTTTCGACCCAAAAG+TGG | 0.540620 | 5_1:-12507522 | None:intergenic |
| TGCCTGTCCATCCTTTCCAC+AGG | 0.541611 | 5_1:-12507124 | None:intergenic |
| ACTACGTTATTGAGGGAACA+AGG | 0.543366 | 5_1:+12507092 | Msa0718350:CDS |
| GGGCCTTCTGTCCTGTGGAA+AGG | 0.544497 | 5_1:+12507113 | Msa0718350:CDS |
| CTTCTGTCCTGTGGAAAGGA+TGG | 0.546940 | 5_1:+12507117 | Msa0718350:CDS |
| AATATACAAGACTTCTGTGC+TGG | 0.548042 | 5_1:-12507232 | None:intergenic |
| AGGATCATGGCGGCCATGGA+AGG | 0.551462 | 5_1:+12506035 | Msa0718350:exon |
| TTTGGCTATGGTGCTCAAGG+AGG | 0.557751 | 5_1:+12507152 | Msa0718350:CDS |
| GCATTCCTCCAATGGTGCAA+AGG | 0.561781 | 5_1:-12506094 | None:intergenic |
| GGTTATACCGCTGGATCCGT+TGG | 0.563265 | 5_1:+12508486 | Msa0718350:CDS |
| ATTTGAAGCTGTTAAAGTCA+GGG | 0.563948 | 5_1:+12507304 | Msa0718350:CDS |
| CATCCTTTCCACAGGACAGA+AGG | 0.566116 | 5_1:-12507116 | None:intergenic |
| AGCACTGAGCATTCCTCCAA+TGG | 0.567164 | 5_1:-12506102 | None:intergenic |
| CATGTTTGACGGCTTTCCAA+AGG | 0.568484 | 5_1:+12507355 | Msa0718350:CDS |
| ATTGGAGGAATGCTCAGTGC+TGG | 0.571365 | 5_1:+12506104 | Msa0718350:CDS |
| TGTTCAAAAGCTCAACAGCT+AGG | 0.578381 | 5_1:+12508447 | Msa0718350:CDS |
| AACAAGGGCCTTCTGTCCTG+TGG | 0.579264 | 5_1:+12507108 | Msa0718350:CDS |
| CATTCTAATAGGAAGACTCC+TGG | 0.594584 | 5_1:-12508705 | None:intergenic |
| ATCATGGCGGCCATGGAAGG+AGG | 0.596330 | 5_1:+12506038 | Msa0718350:exon |
| GTGCAAAGGGCATAATACCT+TGG | 0.599144 | 5_1:-12506080 | None:intergenic |
| GTGCTGGTCTACCAATACAT+TGG | 0.601303 | 5_1:-12507216 | None:intergenic |
| TAAGAAGTTCCAACAAAATG+GGG | 0.608820 | 5_1:+12505764 | None:intergenic |
| CCAAAGGTATATGCAGCAGA+AGG | 0.616204 | 5_1:+12507371 | Msa0718350:CDS |
| AAATACCAGAACAAGACTCT+CGG | 0.618357 | 5_1:-12508565 | None:intergenic |
| CACGTGAAAGAGTTCAGTGA+AGG | 0.621136 | 5_1:+12505968 | Msa0718350:five_prime_UTR |
| CTACGTTATTGAGGGAACAA+GGG | 0.623719 | 5_1:+12507093 | Msa0718350:CDS |
| GCACAACCTAGTTATGCTAA+GGG | 0.624854 | 5_1:+12507332 | Msa0718350:CDS |
| AGGAGTTGTAGCAAGATGAG+TGG | 0.639871 | 5_1:-12506129 | None:intergenic |
| GAATGTTGAGAACATAACCA+TGG | 0.644534 | 5_1:-12508370 | None:intergenic |
| AACATGCCCTTAGCATAACT+AGG | 0.649459 | 5_1:-12507338 | None:intergenic |
| ATTAGAAACAAAGCTACCAA+CGG | 0.659190 | 5_1:-12508502 | None:intergenic |
| AAAGCTACCAACGGATCCAG+CGG | 0.665155 | 5_1:-12508493 | None:intergenic |
| TATGCAGCAGAAGGCGCACG+AGG | 0.673682 | 5_1:+12507380 | Msa0718350:CDS |
| CCAAAAGTGGAACAAGTCCA+CGG | 0.677014 | 5_1:-12507509 | None:intergenic |
| TCGCACAAGAATTAACGCCA+AGG | 0.686330 | 5_1:+12506063 | Msa0718350:CDS |
| AAGAAGTTCCAACAAAATGG+GGG | 0.689869 | 5_1:+12505765 | Msa0718350:five_prime_UTR |
| ATGCAGCAGAAGGCGCACGA+GGG | 0.753181 | 5_1:+12507381 | Msa0718350:CDS |
| ACTGCTTGCAGATTCTACCG+TGG | 0.755591 | 5_1:+12507492 | Msa0718350:intron |
| ACTGAAGAAAAGGATCATGG+CGG | 0.768021 | 5_1:+12506025 | Msa0718350:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAGAAATTAAATAAAAAA+TGG | - | chr5_1:12506200-12506219 | None:intergenic | 10.0% |
| !! | AAATACTGTAATATTTAATT+GGG | - | chr5_1:12507061-12507080 | None:intergenic | 10.0% |
| !!! | TTTTTTTAGTTTGTTTGATT+AGG | + | chr5_1:12506239-12506258 | Msa0718350:intron | 15.0% |
| !!! | GAAAAACATTAGTTTTTTTT+TGG | + | chr5_1:12506494-12506513 | Msa0718350:intron | 15.0% |
| !! | ATATATTGTTACTAAACATT+AGG | - | chr5_1:12506623-12506642 | None:intergenic | 15.0% |
| !! | ATGTTTAGTAACAATATATT+TGG | + | chr5_1:12506624-12506643 | Msa0718350:intron | 15.0% |
| !!! | TATTTTGTTACTAAACATTA+GGG | - | chr5_1:12506699-12506718 | None:intergenic | 15.0% |
| !!! | AAAACAGATTAGTTTTTTTT+TGG | + | chr5_1:12506725-12506744 | Msa0718350:intron | 15.0% |
| !!! | AAACAGATTAGTTTTTTTTT+GGG | + | chr5_1:12506726-12506745 | Msa0718350:intron | 15.0% |
| !! | ATAAAAAATGTGGAAAAATT+TGG | + | chr5_1:12506789-12506808 | Msa0718350:intron | 15.0% |
| !! | TAAAAAATGTGGAAAAATTT+GGG | + | chr5_1:12506790-12506809 | Msa0718350:intron | 15.0% |
| !! | GAAATACTGTAATATTTAAT+TGG | - | chr5_1:12507062-12507081 | None:intergenic | 15.0% |
| !!! | TTTGATTAGGTTTTAGAAAT+GGG | + | chr5_1:12506252-12506271 | Msa0718350:intron | 20.0% |
| !! | AAACCTATTACTAAACATTA+GGG | - | chr5_1:12506333-12506352 | None:intergenic | 20.0% |
| !! | AAAACCTATTACTAAACATT+AGG | - | chr5_1:12506334-12506353 | None:intergenic | 20.0% |
| !! | TAAATTGCTACTAAACAATA+GGG | - | chr5_1:12506465-12506484 | None:intergenic | 20.0% |
| !! | ATAAATTGCTACTAAACAAT+AGG | - | chr5_1:12506466-12506485 | None:intergenic | 20.0% |
| !!! | ATTTGGATAAACAGTTTTTT+TGG | + | chr5_1:12506641-12506660 | Msa0718350:intron | 20.0% |
| !!! | TTTGGATAAACAGTTTTTTT+GGG | + | chr5_1:12506642-12506661 | Msa0718350:intron | 20.0% |
| !!! | GTATTTTGTTACTAAACATT+AGG | - | chr5_1:12506700-12506719 | None:intergenic | 20.0% |
| !! | ATGTTTAGTAACAAAATACA+TGG | + | chr5_1:12506701-12506720 | Msa0718350:intron | 20.0% |
| !!! | AACAGATTAGTTTTTTTTTG+GGG | + | chr5_1:12506727-12506746 | Msa0718350:intron | 20.0% |
| !! | AAATCATTCTCAAACATAAA+GGG | - | chr5_1:12506756-12506775 | None:intergenic | 20.0% |
| !! | AAAATCATTCTCAAACATAA+AGG | - | chr5_1:12506757-12506776 | None:intergenic | 20.0% |
| !! | AAGATCAATTCTAAACATTA+GGG | - | chr5_1:12506986-12507005 | None:intergenic | 20.0% |
| !! | TTAAATAAAGTTTCAAGAGA+TGG | - | chr5_1:12507559-12507578 | None:intergenic | 20.0% |
| ! | AGAATAAGGAAGAAAATTAG+AGG | - | chr5_1:12505894-12505913 | None:intergenic | 25.0% |
| !! | TTCTAGAAAGAGAAAGAATA+AGG | - | chr5_1:12505908-12505927 | None:intergenic | 25.0% |
| !! | GATTTTTAACACTGAAGAAA+AGG | + | chr5_1:12506015-12506034 | Msa0718350:five_prime_UTR | 25.0% |
| ! | TTAACTTTCAAAACATCAAG+AGG | - | chr5_1:12506152-12506171 | None:intergenic | 25.0% |
| !!! | GTTTGATTAGGTTTTAGAAA+TGG | + | chr5_1:12506251-12506270 | Msa0718350:intron | 25.0% |
| !!! | TTGATTAGGTTTTAGAAATG+GGG | + | chr5_1:12506253-12506272 | Msa0718350:intron | 25.0% |
| ! | AAATCATACTCAACACAAAA+GGG | - | chr5_1:12506306-12506325 | None:intergenic | 25.0% |
| ! | AAAATCATACTCAACACAAA+AGG | - | chr5_1:12506307-12506326 | None:intergenic | 25.0% |
| ! | AAATCACTCTCAAACATAAA+GGG | - | chr5_1:12506367-12506386 | None:intergenic | 25.0% |
| ! | AAAATCACTCTCAAACATAA+AGG | - | chr5_1:12506368-12506387 | None:intergenic | 25.0% |
| !!! | GTGGAAAAGTTGAAATTTTT+TGG | + | chr5_1:12506408-12506427 | Msa0718350:intron | 25.0% |
| ! | TTGTTTAGTAGCAATTTATG+TGG | + | chr5_1:12506467-12506486 | Msa0718350:intron | 25.0% |
| ! | TGTTTAGTAGCAATTTATGT+GGG | + | chr5_1:12506468-12506487 | Msa0718350:intron | 25.0% |
| ! | GTGGGAAAATTGAATATTTA+TGG | + | chr5_1:12506565-12506584 | Msa0718350:intron | 25.0% |
| !! | TATTTATGGTTACCCTTTTA+TGG | + | chr5_1:12506579-12506598 | Msa0718350:intron | 25.0% |
| ! | ATTCATTCTCATCCATAAAA+GGG | - | chr5_1:12506594-12506613 | None:intergenic | 25.0% |
| ! | AATTCATTCTCATCCATAAA+AGG | - | chr5_1:12506595-12506614 | None:intergenic | 25.0% |
| ! | ACACTAATGCATAAAAAATG+TGG | + | chr5_1:12506779-12506798 | Msa0718350:intron | 25.0% |
| ! | CAAGATCAATTCTAAACATT+AGG | - | chr5_1:12506987-12507006 | None:intergenic | 25.0% |
| ! | TATTTAATCTTGCACTAGTT+AGG | + | chr5_1:12507572-12507591 | Msa0718350:intron | 25.0% |
| ! | ATTTAATCTTGCACTAGTTA+GGG | + | chr5_1:12507573-12507592 | Msa0718350:intron | 25.0% |
| ! | TATACTTAAAGATGTTTAGC+TGG | + | chr5_1:12507695-12507714 | Msa0718350:intron | 25.0% |
| ! | TATACTTAAAGATGTTTAGC+TGG | + | chr5_1:12507695-12507714 | Msa0718350:intron | 25.0% |
| !! | TTTCTCTTTGGTATATGTTT+TGG | + | chr5_1:12507826-12507845 | Msa0718350:intron | 25.0% |
| ! | TTTGGTATCTTTATCATATC+TGG | + | chr5_1:12507844-12507863 | Msa0718350:intron | 25.0% |
| ! | TATTTGATTGATCAGGTTAT+AGG | + | chr5_1:12507947-12507966 | Msa0718350:intron | 25.0% |
| ! | ATTTGATTGATCAGGTTATA+GGG | + | chr5_1:12507948-12507967 | Msa0718350:intron | 25.0% |
| !! | AAGTATTCAGTCTATTCTTT+TGG | + | chr5_1:12508052-12508071 | Msa0718350:intron | 25.0% |
| !!! | AGTATCCTGTTTTTTTTTGT+TGG | + | chr5_1:12508340-12508359 | Msa0718350:intron | 25.0% |
| ! | CAATGTTGTCAAAAGAAAAA+AGG | + | chr5_1:12508419-12508438 | Msa0718350:CDS | 25.0% |
| !!! | ATTGTGTTCCACTTATTTTA+TGG | + | chr5_1:12508645-12508664 | Msa0718350:intron | 25.0% |
| !!! | TGTTTTGAAAGTTAACATGC+AGG | + | chr5_1:12506157-12506176 | Msa0718350:CDS | 30.0% |
| GTACCCTAATGTTTAGTAAT+AGG | + | chr5_1:12506327-12506346 | Msa0718350:intron | 30.0% | |
| ! | ACACTAATGGACAAAATATG+TGG | + | chr5_1:12506389-12506408 | Msa0718350:intron | 30.0% |
| !!! | ATTTTTTGGCTAACCTTTCA+TGG | + | chr5_1:12506422-12506441 | Msa0718350:intron | 30.0% |
| AAATCATTCTCATCCATGAA+AGG | - | chr5_1:12506438-12506457 | None:intergenic | 30.0% | |
| ! | TTCATGGATGAGAATGATTT+TGG | + | chr5_1:12506438-12506457 | Msa0718350:intron | 30.0% |
| ACATAACTCTCAAGCATAAA+GGG | - | chr5_1:12506523-12506542 | None:intergenic | 30.0% | |
| AACATAACTCTCAAGCATAA+AGG | - | chr5_1:12506524-12506543 | None:intergenic | 30.0% | |
| AGAGTTATGTTTCACACTAA+TGG | + | chr5_1:12506533-12506552 | Msa0718350:intron | 30.0% | |
| ! | ACACTAATGGACAAAAAATG+TGG | + | chr5_1:12506546-12506565 | Msa0718350:intron | 30.0% |
| ! | CACTAATGGACAAAAAATGT+GGG | + | chr5_1:12506547-12506566 | Msa0718350:intron | 30.0% |
| ! | GTGGAAAACTTGACTATTTT+TGG | + | chr5_1:12506934-12506953 | Msa0718350:intron | 30.0% |
| TGGAAAATCATTCTCACAAA+GGG | - | chr5_1:12506963-12506982 | None:intergenic | 30.0% | |
| ATCAATTCTAAACATTAGGG+TGG | - | chr5_1:12506983-12507002 | None:intergenic | 30.0% | |
| GTTCGCGTTATCATATTTAA+TGG | + | chr5_1:12507006-12507025 | Msa0718350:intron | 30.0% | |
| ! | TGGTCTCTACGAATATTTTA+AGG | + | chr5_1:12507184-12507203 | Msa0718350:CDS | 30.0% |
| !! | GGTCTCTACGAATATTTTAA+GGG | + | chr5_1:12507185-12507204 | Msa0718350:CDS | 30.0% |
| AAATGGACATAGAGCTAAAT+TGG | - | chr5_1:12507288-12507307 | None:intergenic | 30.0% | |
| ! | ATTTGAAGCTGTTAAAGTCA+GGG | + | chr5_1:12507304-12507323 | Msa0718350:CDS | 30.0% |
| AAAGATGTTTAGCTGGAAAT+TGG | + | chr5_1:12507702-12507721 | Msa0718350:intron | 30.0% | |
| ATATACCAAAGAGAAAAGCA+AGG | - | chr5_1:12507822-12507841 | None:intergenic | 30.0% | |
| AAAATTTCCAGACACTAAGT+AGG | - | chr5_1:12507870-12507889 | None:intergenic | 30.0% | |
| GAGAAACTATTTGATTGATC+AGG | + | chr5_1:12507940-12507959 | Msa0718350:intron | 30.0% | |
| ! | TTGTTAGTTTATCAACCAAC+TGG | - | chr5_1:12507983-12508002 | None:intergenic | 30.0% |
| !! | AACTTCTTTAAAGCTAAGCA+TGG | + | chr5_1:12508157-12508176 | Msa0718350:intron | 30.0% |
| ACTGTCCAACAAAAAAAAAC+AGG | - | chr5_1:12508348-12508367 | None:intergenic | 30.0% | |
| TGTTGTCAAAAGAAAAAAGG+AGG | + | chr5_1:12508422-12508441 | Msa0718350:CDS | 30.0% | |
| ATTAGAAACAAAGCTACCAA+CGG | - | chr5_1:12508505-12508524 | None:intergenic | 30.0% | |
| TTGCTTCTTTGCAATTCATT+TGG | + | chr5_1:12508586-12508605 | Msa0718350:intron | 30.0% | |
| AAGACTCCTGGTAAATAAAT+TGG | - | chr5_1:12508696-12508715 | None:intergenic | 30.0% | |
| AACCATTGCAAAGTTATAGA+AGG | - | chr5_1:12508743-12508762 | None:intergenic | 30.0% | |
| ! | TACGACACTATCAAAGTTTT+AGG | + | chr5_1:12508767-12508786 | Msa0718350:CDS | 30.0% |
| AAGAAGTTCCAACAAAATGG+GGG | + | chr5_1:12505765-12505784 | Msa0718350:five_prime_UTR | 35.0% | |
| TGAGGCAATTAACATTAAGC+AGG | + | chr5_1:12505802-12505821 | Msa0718350:five_prime_UTR | 35.0% | |
| GAGTTCAGTGAAGGAATAAA+TGG | + | chr5_1:12505977-12505996 | Msa0718350:five_prime_UTR | 35.0% | |
| AACACTGAAGAAAAGGATCA+TGG | + | chr5_1:12506022-12506041 | Msa0718350:exon | 35.0% | |
| TTGAAAGTTAACATGCAGGT+TGG | + | chr5_1:12506161-12506180 | Msa0718350:intron | 35.0% | |
| AAATGGGGAAGTGGAAAAAT+TGG | + | chr5_1:12506268-12506287 | Msa0718350:intron | 35.0% | |
| ! | GAGAGTGATTTTCACACTAA+TGG | + | chr5_1:12506376-12506395 | Msa0718350:intron | 35.0% |
| TAGTAGCAATTTATGTGGGA+TGG | + | chr5_1:12506472-12506491 | Msa0718350:intron | 35.0% | |
| AGCTGAACTCTTAGATTATC+AGG | + | chr5_1:12506870-12506889 | Msa0718350:intron | 35.0% | |
| GCTGAACTCTTAGATTATCA+GGG | + | chr5_1:12506871-12506890 | Msa0718350:intron | 35.0% | |
| GGTTAAGACAGAACAAAATG+TGG | + | chr5_1:12506915-12506934 | Msa0718350:intron | 35.0% | |
| GTGGAAAATCATTCTCACAA+AGG | - | chr5_1:12506964-12506983 | None:intergenic | 35.0% | |
| CGCGTTATCATATTTAATGG+AGG | + | chr5_1:12507009-12507028 | Msa0718350:intron | 35.0% | |
| GAAGTGATGTTGTTACATGT+AGG | + | chr5_1:12507031-12507050 | Msa0718350:intron | 35.0% | |
| GTGCTTTACTACGTTATTGA+GGG | + | chr5_1:12507085-12507104 | Msa0718350:CDS | 35.0% | |
| AATATACAAGACTTCTGTGC+TGG | - | chr5_1:12507235-12507254 | None:intergenic | 35.0% | |
| CTGACTTTAACAGCTTCAAA+TGG | - | chr5_1:12507305-12507324 | None:intergenic | 35.0% | |
| ! | CATTTGAAGCTGTTAAAGTC+AGG | + | chr5_1:12507303-12507322 | Msa0718350:CDS | 35.0% |
| CTTGATGTGCATCTATCTTT+AGG | + | chr5_1:12507435-12507454 | Msa0718350:intron | 35.0% | |
| CAAGAGATGGTGAAATTACA+TGG | - | chr5_1:12507546-12507565 | None:intergenic | 35.0% | |
| CATGAACACTATCTTTATGC+TGG | + | chr5_1:12507628-12507647 | Msa0718350:intron | 35.0% | |
| TTATTGTTAGTCACATGCTG+AGG | + | chr5_1:12507914-12507933 | Msa0718350:intron | 35.0% | |
| CACTATTACAACATAGTCAC+AGG | - | chr5_1:12508100-12508119 | None:intergenic | 35.0% | |
| GAGTGTTCAGTATATTCTTC+TGG | + | chr5_1:12508181-12508200 | Msa0718350:intron | 35.0% | |
| !! | TTTTGACTAAGTTCCTGTGA+TGG | + | chr5_1:12508238-12508257 | Msa0718350:intron | 35.0% |
| ACAAATTTCATCACCATCAC+AGG | - | chr5_1:12508254-12508273 | None:intergenic | 35.0% | |
| ! | TTTTTGTTGGACAGTTTCCA+TGG | + | chr5_1:12508353-12508372 | Msa0718350:intron | 35.0% |
| GAATGTTGAGAACATAACCA+TGG | - | chr5_1:12508373-12508392 | None:intergenic | 35.0% | |
| GAAGCTACTATATTATCAGC+AGG | - | chr5_1:12508528-12508547 | None:intergenic | 35.0% | |
| AAATACCAGAACAAGACTCT+CGG | - | chr5_1:12508568-12508587 | None:intergenic | 35.0% | |
| !!! | TGTTCCACTTATTTTATGGC+AGG | + | chr5_1:12508649-12508668 | Msa0718350:intron | 35.0% |
| ATAGCCTGCCATAAAATAAG+TGG | - | chr5_1:12508656-12508675 | None:intergenic | 35.0% | |
| TCTTCCTATTAGAATGTTGC+TGG | + | chr5_1:12508712-12508731 | Msa0718350:CDS | 35.0% | |
| GTCCTTCTATAACTTTGCAA+TGG | + | chr5_1:12508738-12508757 | Msa0718350:CDS | 35.0% | |
| !!! | GACACTATCAAAGTTTTAGG+CGG | + | chr5_1:12508770-12508789 | Msa0718350:CDS | 35.0% |
| ! | AAAGAATGCCCCCATTTTGT+TGG | - | chr5_1:12505776-12505795 | None:intergenic | 40.0% |
| ACTGAAGAAAAGGATCATGG+CGG | + | chr5_1:12506025-12506044 | Msa0718350:exon | 40.0% | |
| TATTATGCCCTTTGCACCAT+TGG | + | chr5_1:12506086-12506105 | Msa0718350:CDS | 40.0% | |
| !!! | AGGTTTTAGAAATGGGGAAG+TGG | + | chr5_1:12506259-12506278 | Msa0718350:intron | 40.0% |
| !!! | TTTTTTTGGGCTGCCCTTAT+AGG | + | chr5_1:12506655-12506674 | Msa0718350:intron | 40.0% |
| AATCACTCCCAGACCTATAA+GGG | - | chr5_1:12506671-12506690 | None:intergenic | 40.0% | |
| AAATCACTCCCAGACCTATA+AGG | - | chr5_1:12506672-12506691 | None:intergenic | 40.0% | |
| TTTCTGAGTTTGAACCTGAC+TGG | + | chr5_1:12506815-12506834 | Msa0718350:intron | 40.0% | |
| AACCTGACTGGAACAATCAT+TGG | + | chr5_1:12506827-12506846 | Msa0718350:intron | 40.0% | |
| TGACTGGAACAATCATTGGT+CGG | + | chr5_1:12506831-12506850 | Msa0718350:intron | 40.0% | |
| AATCTAAGAGTTCAGCTGAG+AGG | - | chr5_1:12506867-12506886 | None:intergenic | 40.0% | |
| CGTGCTTTACTACGTTATTG+AGG | + | chr5_1:12507084-12507103 | Msa0718350:CDS | 40.0% | |
| ACTACGTTATTGAGGGAACA+AGG | + | chr5_1:12507092-12507111 | Msa0718350:CDS | 40.0% | |
| CTACGTTATTGAGGGAACAA+GGG | + | chr5_1:12507093-12507112 | Msa0718350:CDS | 40.0% | |
| GGGAGTTTACTCCAATGTAT+TGG | + | chr5_1:12507205-12507224 | Msa0718350:CDS | 40.0% | |
| AGCACAACCTAGTTATGCTA+AGG | + | chr5_1:12507331-12507350 | Msa0718350:CDS | 40.0% | |
| GCACAACCTAGTTATGCTAA+GGG | + | chr5_1:12507332-12507351 | Msa0718350:CDS | 40.0% | |
| AACATGCCCTTAGCATAACT+AGG | - | chr5_1:12507341-12507360 | None:intergenic | 40.0% | |
| ! | TATGCTAAGGGCATGTTTGA+CGG | + | chr5_1:12507344-12507363 | Msa0718350:CDS | 40.0% |
| !! | TTACGCCTTGCTTTTCTCTT+TGG | + | chr5_1:12507814-12507833 | Msa0718350:intron | 40.0% |
| ! | ATAGGGCATTAGTTACCAGT+TGG | + | chr5_1:12507965-12507984 | Msa0718350:intron | 40.0% |
| TGTTCAAAAGCTCAACAGCT+AGG | + | chr5_1:12508447-12508466 | Msa0718350:CDS | 40.0% | |
| TGGCAGGCTATCAGAAAAAT+TGG | + | chr5_1:12508665-12508684 | Msa0718350:intron | 40.0% | |
| GGCAGGCTATCAGAAAAATT+GGG | + | chr5_1:12508666-12508685 | Msa0718350:intron | 40.0% | |
| ! | GGCTAGCCAATTTATTTACC+AGG | + | chr5_1:12508687-12508706 | Msa0718350:CDS | 40.0% |
| CATTCTAATAGGAAGACTCC+TGG | - | chr5_1:12508708-12508727 | None:intergenic | 40.0% | |
| CCAACCAGCAACATTCTAAT+AGG | - | chr5_1:12508719-12508738 | None:intergenic | 40.0% | |
| CCTATTAGAATGTTGCTGGT+TGG | + | chr5_1:12508716-12508735 | Msa0718350:CDS | 40.0% | |
| !! | GGGGCATTCTTTGACTTTTG+AGG | + | chr5_1:12505784-12505803 | Msa0718350:five_prime_UTR | 45.0% |
| CACGTGAAAGAGTTCAGTGA+AGG | + | chr5_1:12505968-12505987 | Msa0718350:five_prime_UTR | 45.0% | |
| TCGCACAAGAATTAACGCCA+AGG | + | chr5_1:12506063-12506082 | Msa0718350:CDS | 45.0% | |
| ! | GTGCAAAGGGCATAATACCT+TGG | - | chr5_1:12506083-12506102 | None:intergenic | 45.0% |
| CATTCCTCCAATGGTGCAAA+GGG | - | chr5_1:12506096-12506115 | None:intergenic | 45.0% | |
| AGGAGTTGTAGCAAGATGAG+TGG | - | chr5_1:12506132-12506151 | None:intergenic | 45.0% | |
| GACCAATGATTGTTCCAGTC+AGG | - | chr5_1:12506832-12506851 | None:intergenic | 45.0% | |
| ATTATCAGGGCCGTTTCTCT+AGG | + | chr5_1:12506884-12506903 | Msa0718350:intron | 45.0% | |
| ACAGGCAAGTTCTTTGGCTA+TGG | + | chr5_1:12507140-12507159 | Msa0718350:CDS | 45.0% | |
| TTCTTTGGCTATGGTGCTCA+AGG | + | chr5_1:12507149-12507168 | Msa0718350:CDS | 45.0% | |
| ! | GTGCTGGTCTACCAATACAT+TGG | - | chr5_1:12507219-12507238 | None:intergenic | 45.0% |
| CATGTTTGACGGCTTTCCAA+AGG | + | chr5_1:12507355-12507374 | Msa0718350:CDS | 45.0% | |
| CCTTCTGCTGCATATACCTT+TGG | - | chr5_1:12507374-12507393 | None:intergenic | 45.0% | |
| ! | CCAAAGGTATATGCAGCAGA+AGG | + | chr5_1:12507371-12507390 | Msa0718350:CDS | 45.0% |
| CCAAAAGTGGAACAAGTCCA+CGG | - | chr5_1:12507512-12507531 | None:intergenic | 45.0% | |
| !! | CGTGGACTTGTTCCACTTTT+GGG | + | chr5_1:12507510-12507529 | Msa0718350:CDS | 45.0% |
| GGAATGTTTCGACCCAAAAG+TGG | - | chr5_1:12507525-12507544 | None:intergenic | 45.0% | |
| TATCTGGCCTACTTAGTGTC+TGG | + | chr5_1:12507860-12507879 | Msa0718350:intron | 45.0% | |
| CTAGGTGTGACATGTTTAGC+TGG | + | chr5_1:12508465-12508484 | Msa0718350:CDS | 45.0% | |
| TGTTTAGCTGGTTATACCGC+TGG | + | chr5_1:12508477-12508496 | Msa0718350:CDS | 45.0% | |
| !! | AAAAGCCGAGAGTCTTGTTC+TGG | + | chr5_1:12508560-12508579 | Msa0718350:CDS | 45.0% |
| TTGTGCGATTCCTCCTTCCA+TGG | - | chr5_1:12506051-12506070 | None:intergenic | 50.0% | |
| TATGCCCTTTGCACCATTGG+AGG | + | chr5_1:12506089-12506108 | Msa0718350:CDS | 50.0% | |
| GCATTCCTCCAATGGTGCAA+AGG | - | chr5_1:12506097-12506116 | None:intergenic | 50.0% | |
| ! | AGCACTGAGCATTCCTCCAA+TGG | - | chr5_1:12506105-12506124 | None:intergenic | 50.0% |
| ATTGGAGGAATGCTCAGTGC+TGG | + | chr5_1:12506104-12506123 | Msa0718350:CDS | 50.0% | |
| CCCTCCAGTTCCTAGAGAAA+CGG | - | chr5_1:12506897-12506916 | None:intergenic | 50.0% | |
| ! | CCGTTTCTCTAGGAACTGGA+GGG | + | chr5_1:12506894-12506913 | Msa0718350:intron | 50.0% |
| CATCCTTTCCACAGGACAGA+AGG | - | chr5_1:12507119-12507138 | None:intergenic | 50.0% | |
| CTTCTGTCCTGTGGAAAGGA+TGG | + | chr5_1:12507117-12507136 | Msa0718350:CDS | 50.0% | |
| GGATGGACAGGCAAGTTCTT+TGG | + | chr5_1:12507134-12507153 | Msa0718350:CDS | 50.0% | |
| TTTGGCTATGGTGCTCAAGG+AGG | + | chr5_1:12507152-12507171 | Msa0718350:CDS | 50.0% | |
| TTGGCTATGGTGCTCAAGGA+GGG | + | chr5_1:12507153-12507172 | Msa0718350:CDS | 50.0% | |
| ACTGCTTGCAGATTCTACCG+TGG | + | chr5_1:12507492-12507511 | Msa0718350:intron | 50.0% | |
| !! | CCGTGGACTTGTTCCACTTT+TGG | + | chr5_1:12507509-12507528 | Msa0718350:CDS | 50.0% |
| AAAGCTACCAACGGATCCAG+CGG | - | chr5_1:12508496-12508515 | None:intergenic | 50.0% | |
| GAAAAGGATCATGGCGGCCA+TGG | + | chr5_1:12506031-12506050 | Msa0718350:exon | 55.0% | |
| TTGGGCTGCCCTTATAGGTC+TGG | + | chr5_1:12506660-12506679 | Msa0718350:intron | 55.0% | |
| TGGGCTGCCCTTATAGGTCT+GGG | + | chr5_1:12506661-12506680 | Msa0718350:intron | 55.0% | |
| ! | AGGGCCGTTTCTCTAGGAAC+TGG | + | chr5_1:12506890-12506909 | Msa0718350:intron | 55.0% |
| ! | GCCGTTTCTCTAGGAACTGG+AGG | + | chr5_1:12506893-12506912 | Msa0718350:intron | 55.0% |
| AACAAGGGCCTTCTGTCCTG+TGG | + | chr5_1:12507108-12507127 | Msa0718350:CDS | 55.0% | |
| GTCCTGTGGAAAGGATGGAC+AGG | + | chr5_1:12507122-12507141 | Msa0718350:CDS | 55.0% | |
| TGCCTGTCCATCCTTTCCAC+AGG | - | chr5_1:12507127-12507146 | None:intergenic | 55.0% | |
| ! | GCTCAAGGAGGGTGCAGATT+TGG | + | chr5_1:12507164-12507183 | Msa0718350:CDS | 55.0% |
| GGTTATACCGCTGGATCCGT+TGG | + | chr5_1:12508486-12508505 | Msa0718350:CDS | 55.0% | |
| AGGATCATGGCGGCCATGGA+AGG | + | chr5_1:12506035-12506054 | Msa0718350:exon | 60.0% | |
| ATCATGGCGGCCATGGAAGG+AGG | + | chr5_1:12506038-12506057 | Msa0718350:exon | 60.0% | |
| GGGCCTTCTGTCCTGTGGAA+AGG | + | chr5_1:12507113-12507132 | Msa0718350:CDS | 60.0% | |
| ! | TATGCAGCAGAAGGCGCACG+AGG | + | chr5_1:12507380-12507399 | Msa0718350:CDS | 60.0% |
| ! | ATGCAGCAGAAGGCGCACGA+GGG | + | chr5_1:12507381-12507400 | Msa0718350:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 12505765 | 12508799 | 12505765 | ID=Msa0718350;Name=Msa0718350 |
| chr5_1 | mRNA | 12505765 | 12508799 | 12505765 | ID=Msa0718350-mRNA-1;Parent=Msa0718350;Name=Msa0718350-mRNA-1;_AED=0.14;_eAED=0.14;_QI=174|0.8|0.66|1|0.8|0.66|6|0|291 |
| chr5_1 | exon | 12505765 | 12505823 | 12505765 | ID=Msa0718350-mRNA-1:exon:5107;Parent=Msa0718350-mRNA-1 |
| chr5_1 | exon | 12505926 | 12506178 | 12505926 | ID=Msa0718350-mRNA-1:exon:5108;Parent=Msa0718350-mRNA-1 |
| chr5_1 | exon | 12507053 | 12507402 | 12507053 | ID=Msa0718350-mRNA-1:exon:5109;Parent=Msa0718350-mRNA-1 |
| chr5_1 | exon | 12507503 | 12507546 | 12507503 | ID=Msa0718350-mRNA-1:exon:5110;Parent=Msa0718350-mRNA-1 |
| chr5_1 | exon | 12508367 | 12508581 | 12508367 | ID=Msa0718350-mRNA-1:exon:5111;Parent=Msa0718350-mRNA-1 |
| chr5_1 | exon | 12508671 | 12508799 | 12508671 | ID=Msa0718350-mRNA-1:exon:5112;Parent=Msa0718350-mRNA-1 |
| chr5_1 | five_prime_UTR | 12505765 | 12505823 | 12505765 | ID=Msa0718350-mRNA-1:five_prime_utr;Parent=Msa0718350-mRNA-1 |
| chr5_1 | five_prime_UTR | 12505926 | 12506040 | 12505926 | ID=Msa0718350-mRNA-1:five_prime_utr;Parent=Msa0718350-mRNA-1 |
| chr5_1 | CDS | 12506041 | 12506178 | 12506041 | ID=Msa0718350-mRNA-1:cds;Parent=Msa0718350-mRNA-1 |
| chr5_1 | CDS | 12507053 | 12507402 | 12507053 | ID=Msa0718350-mRNA-1:cds;Parent=Msa0718350-mRNA-1 |
| chr5_1 | CDS | 12507503 | 12507546 | 12507503 | ID=Msa0718350-mRNA-1:cds;Parent=Msa0718350-mRNA-1 |
| chr5_1 | CDS | 12508367 | 12508581 | 12508367 | ID=Msa0718350-mRNA-1:cds;Parent=Msa0718350-mRNA-1 |
| chr5_1 | CDS | 12508671 | 12508799 | 12508671 | ID=Msa0718350-mRNA-1:cds;Parent=Msa0718350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
