AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0839380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0839380 MtrunA17_Chr5g0407451 99.673 306 1 0 1 306 1 306 0.0 628
Msa0839380 MtrunA17_Chr4g0051841 62.245 294 105 2 16 303 24 317 2.58e-135 386
Msa0839380 MtrunA17_Chr7g0251981 49.655 290 142 1 13 298 74 363 9.61e-102 303
Msa0839380 MtrunA17_Chr8g0385891 49.296 284 140 1 12 291 64 347 9.68e-100 296
Msa0839380 MtrunA17_Chr6g0461981 48.252 286 144 1 16 297 58 343 3.09e-98 293
Msa0839380 MtrunA17_Chr5g0431531 26.923 286 186 5 16 286 34 311 6.83e-20 88.2
Msa0839380 MtrunA17_Chr4g0028531 25.163 306 193 11 3 285 7 299 5.95e-16 77.0
Msa0839380 MtrunA17_Chr7g0240341 26.437 174 120 2 22 187 135 308 2.34e-13 69.3
Msa0839380 MtrunA17_Chr5g0396801 26.129 310 178 11 22 289 39 339 3.23e-13 69.3
Msa0839380 MtrunA17_Chr8g0385571 25.714 175 120 4 23 188 324 497 1.17e-12 68.2
Msa0839380 MtrunA17_Chr7g0269701 29.714 175 110 4 31 193 133 306 1.81e-12 67.0
Msa0839380 MtrunA17_Chr8g0347451 24.850 334 197 10 3 291 31 355 2.35e-12 67.0
Msa0839380 MtrunA17_Chr5g0423111 28.889 180 110 5 34 197 132 309 3.07e-12 66.6
Msa0839380 MtrunA17_Chr7g0241521 25.131 191 130 3 12 195 117 301 5.10e-12 65.5
Msa0839380 MtrunA17_Chr3g0131501 23.729 177 122 4 22 187 300 474 8.07e-12 65.5
Msa0839380 MtrunA17_Chr4g0008061 29.348 184 104 5 27 188 21 200 8.75e-12 64.7
Msa0839380 MtrunA17_Chr8g0372531 28.877 187 101 9 33 193 125 305 1.20e-11 64.3
Msa0839380 MtrunA17_Chr1g0195101 27.746 173 112 4 33 193 132 303 2.16e-11 63.5
Msa0839380 MtrunA17_Chr3g0103681 26.708 161 110 2 36 189 135 294 2.23e-11 63.5
Msa0839380 MtrunA17_Chr7g0252401 24.561 171 123 3 22 187 304 473 3.70e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0839380 AT2G17270.1 65.017 303 105 1 1 302 1 303 1.25e-154 435
Msa0839380 AT3G48850.1 48.780 287 143 1 13 295 63 349 2.06e-104 309
Msa0839380 AT5G14040.1 50.690 290 139 1 13 298 74 363 2.28e-104 310
Msa0839380 AT1G07030.1 26.786 280 183 6 22 286 41 313 7.37e-19 85.9
Msa0839380 AT5G01340.1 26.936 297 189 9 9 285 7 295 2.01e-18 84.3
Msa0839380 AT2G30160.1 26.246 301 186 8 9 286 31 318 2.09e-17 81.6
Msa0839380 AT3G53940.1 28.161 174 117 2 22 187 181 354 1.50e-15 76.6
Msa0839380 AT2G37890.1 27.586 174 118 2 22 187 153 326 1.69e-14 73.6
Msa0839380 AT3G20240.1 24.742 291 186 9 22 286 53 336 2.56e-12 67.0
Msa0839380 AT4G01100.3 26.728 217 125 6 6 193 83 294 2.61e-12 66.6
Msa0839380 AT5G66380.1 27.660 188 106 7 33 196 122 303 3.58e-12 66.2
Msa0839380 AT4G01100.1 26.728 217 125 6 6 193 133 344 3.89e-12 66.6
Msa0839380 AT3G54110.1 22.905 179 131 1 22 193 119 297 4.60e-12 65.9
Msa0839380 AT4G01100.2 26.728 217 125 6 6 193 147 358 5.98e-12 66.2
Msa0839380 AT4G03115.1 24.915 293 189 9 16 293 37 313 1.74e-11 64.3
Msa0839380 AT4G03115.3 24.915 293 189 9 16 293 69 345 2.66e-11 63.9
Msa0839380 AT5G58970.1 26.054 261 154 9 32 265 27 275 3.66e-11 63.2
Msa0839380 AT3G21390.2 25.481 208 125 5 19 197 150 356 4.33e-11 63.5
Msa0839380 AT3G21390.1 25.481 208 125 5 19 197 128 334 4.66e-11 63.2
Msa0839380 AT5G48970.1 25.243 206 119 5 19 193 133 334 6.45e-11 62.8
Msa0839380 AT5G48970.2 25.243 206 119 5 19 193 62 263 7.15e-11 62.0

Find 104 sgRNAs with CRISPR-Local

Find 504 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATACTGTAATATTTAAT+TGG 0.125547 5_4:-14288752 None:intergenic
CTCATTAAGTTTGTAGAATA+TGG 0.161414 5_4:+14294604 Msa0839380:three_prime_UTR
CCGTGGACTTGTTCCACTTT+TGG 0.215295 5_4:+14289202 Msa0839380:CDS
CCTAAGAAGTTCCAACAAAA+TGG 0.233444 5_4:+14287437 None:intergenic
AAGACTCCTGGTAAATAAAT+TGG 0.271424 5_4:-14290386 None:intergenic
AAATGGACATAGAGCTAAAT+TGG 0.273532 5_4:-14288978 None:intergenic
GTTGTTGCATTCACAAGAAT+TGG 0.302169 5_4:-14294702 None:intergenic
GGATGGACAGGCAAGTTCTT+TGG 0.324400 5_4:+14288827 Msa0839380:CDS
GCTCAAGGAGGGTGCAGATT+TGG 0.325080 5_4:+14288857 Msa0839380:CDS
GAGTTCAGTGAAGGAATAAA+TGG 0.327741 5_4:+14287649 Msa0839380:five_prime_UTR
CCAACCAGCAACATTCTAAT+AGG 0.348096 5_4:-14290409 None:intergenic
TCTTCCTATTAGAATGTTGC+TGG 0.355082 5_4:+14290405 Msa0839380:CDS
TCAGTATGATACATTACTTC+TGG 0.368986 5_4:-14294827 None:intergenic
CCTTCTGCTGCATATACCTT+TGG 0.377619 5_4:-14289064 None:intergenic
TATTATGCCCTTTGCACCAT+TGG 0.395910 5_4:+14287757 Msa0839380:CDS
AATACTCATTAACATTATCT+TGG 0.397648 5_4:+14294973 Msa0839380:three_prime_UTR
CTAAGAAGTTCCAACAAAAT+GGG 0.402286 5_4:+14287438 None:intergenic
AAATACTGTAATATTTAATT+GGG 0.407520 5_4:-14288751 None:intergenic
AACCATTGCAAAGTTATAGA+AGG 0.409895 5_4:-14290433 None:intergenic
GTGGAGCACACCAAGAAGTA+TGG 0.422894 5_4:-14294924 None:intergenic
AAGGAATAAATGGAGCTAAC+AGG 0.431004 5_4:+14287659 Msa0839380:five_prime_UTR
CATTTGAAGCTGTTAAAGTC+AGG 0.432003 5_4:+14288996 Msa0839380:CDS
AAAAGCCGAGAGTCTTGTTC+TGG 0.432484 5_4:+14290253 Msa0839380:CDS
CGTGCTTTACTACGTTATTG+AGG 0.441119 5_4:+14288777 Msa0839380:CDS
ACTAATCTTTCGTGTCAGAT+AGG 0.445085 5_4:-14294763 None:intergenic
TATGCTAAGGGCATGTTTGA+CGG 0.461515 5_4:+14289037 Msa0839380:CDS
CTGACTTTAACAGCTTCAAA+TGG 0.463411 5_4:-14288995 None:intergenic
GGGAGTTTACTCCAATGTAT+TGG 0.465784 5_4:+14288898 Msa0839380:CDS
TTTATTAGCAATGCTTGTGC+TGG 0.470214 5_4:+14294878 Msa0839380:three_prime_UTR
GGCTAGCCAATTTATTTACC+AGG 0.471960 5_4:+14290380 Msa0839380:CDS
CATTCCTCCAATGGTGCAAA+GGG 0.480811 5_4:-14287764 None:intergenic
CCTATTAGAATGTTGCTGGT+TGG 0.483372 5_4:+14290409 Msa0839380:CDS
GTCCTTCTATAACTTTGCAA+TGG 0.485403 5_4:+14290431 Msa0839380:CDS
TAGGGCAATTAACATTAAGC+AGG 0.485508 5_4:+14287477 Msa0839380:five_prime_UTR
CTGTGAGATTCCTCCTTCCA+TGG 0.485797 5_4:-14287719 None:intergenic
GTGCTTTACTACGTTATTGA+GGG 0.486855 5_4:+14288778 Msa0839380:CDS
TTCTTTGGCTATGGTGCTCA+AGG 0.488078 5_4:+14288842 Msa0839380:CDS
TGTTTAGCTGGTTATACCGC+TGG 0.496234 5_4:+14290170 Msa0839380:CDS
TACACTGAAGAAAGAGATCA+TGG 0.496367 5_4:+14287693 Msa0839380:exon
GAAAGAGATCATGGCGGCCA+TGG 0.501490 5_4:+14287702 Msa0839380:exon
GTTGCGACTTCACCACTAGT+TGG 0.508085 5_4:-14294431 None:intergenic
TATGCCCTTTGCACCATTGG+AGG 0.515475 5_4:+14287760 Msa0839380:CDS
ACAGGCAAGTTCTTTGGCTA+TGG 0.516450 5_4:+14288833 Msa0839380:CDS
CAAAGTTCTTCCCCTAGAGT+TGG 0.517109 5_4:-14294727 None:intergenic
AGCACAACCTAGTTATGCTA+AGG 0.519278 5_4:+14289024 Msa0839380:CDS
TGCAACAACATCCAACTCTA+GGG 0.522507 5_4:+14294716 Msa0839380:three_prime_UTR
ATGCAACAACATCCAACTCT+AGG 0.524087 5_4:+14294715 Msa0839380:three_prime_UTR
TTGGCTATGGTGCTCAAGGA+GGG 0.525340 5_4:+14288846 Msa0839380:CDS
CTAGGTGTGACATGTTTAGC+TGG 0.525462 5_4:+14290158 Msa0839380:CDS
GTCCTGTGGAAAGGATGGAC+AGG 0.530212 5_4:+14288815 Msa0839380:CDS
GCCAGACCCTTCTTCTAAGT+CGG 0.530551 5_4:-14294453 None:intergenic
TTAACTTTCAAAACATCAAG+AGG 0.535490 5_4:-14287820 None:intergenic
GTCGCAACCGACTTAGAAGA+AGG 0.535540 5_4:+14294446 Msa0839380:CDS
GGAATGTTTCGACCCAAAAG+TGG 0.540620 5_4:-14289215 None:intergenic
TGCCTGTCCATCCTTTCCAC+AGG 0.541611 5_4:-14288817 None:intergenic
ACTACGTTATTGAGGGAACA+AGG 0.543366 5_4:+14288785 Msa0839380:CDS
GCCGATGAGATCATATATGT+TGG 0.544460 5_4:+14294796 Msa0839380:three_prime_UTR
GGGCCTTCTGTCCTGTGGAA+AGG 0.544497 5_4:+14288806 Msa0839380:CDS
CTTCTGTCCTGTGGAAAGGA+TGG 0.546940 5_4:+14288810 Msa0839380:CDS
AATATACAAGACTTCTGTGC+TGG 0.548042 5_4:-14288925 None:intergenic
GAAGCTACTATATTGTCAGC+AGG 0.549701 5_4:-14290218 None:intergenic
GAGATCATGGCGGCCATGGA+AGG 0.551462 5_4:+14287706 Msa0839380:exon
TTTGGCTATGGTGCTCAAGG+AGG 0.557751 5_4:+14288845 Msa0839380:CDS
ACCGACTTAGAAGAAGGGTC+TGG 0.561530 5_4:+14294452 Msa0839380:CDS
GCATTCCTCCAATGGTGCAA+AGG 0.561781 5_4:-14287765 None:intergenic
GGTTATACCGCTGGATCCGT+TGG 0.563265 5_4:+14290179 Msa0839380:CDS
ATTTGAAGCTGTTAAAGTCA+GGG 0.563948 5_4:+14288997 Msa0839380:CDS
CATCCTTTCCACAGGACAGA+AGG 0.566116 5_4:-14288809 None:intergenic
AGCACTGAGCATTCCTCCAA+TGG 0.567164 5_4:-14287773 None:intergenic
CATGTTTGACGGCTTTCCAA+AGG 0.568484 5_4:+14289048 Msa0839380:CDS
ATTGGAGGAATGCTCAGTGC+TGG 0.571365 5_4:+14287775 Msa0839380:CDS
TGTTCAAAAGCTCAACAGCT+AGG 0.578381 5_4:+14290140 Msa0839380:CDS
AACAAGGGCCTTCTGTCCTG+TGG 0.579264 5_4:+14288801 Msa0839380:CDS
CATTCTAATAGGAAGACTCC+TGG 0.594584 5_4:-14290398 None:intergenic
ATCATGGCGGCCATGGAAGG+AGG 0.596330 5_4:+14287709 Msa0839380:exon
GTGCAAAGGGCATAATACCT+TGG 0.599144 5_4:-14287751 None:intergenic
GTGCTGGTCTACCAATACAT+TGG 0.601303 5_4:-14288909 None:intergenic
TAAGAAGTTCCAACAAAATG+GGG 0.608820 5_4:+14287439 None:intergenic
CCAAAGGTATATGCAGCAGA+AGG 0.616204 5_4:+14289064 Msa0839380:CDS
AAACCTTGCAGGCCAACTAG+TGG 0.616772 5_4:+14294419 Msa0839380:intron
AAATACCAGAACAAGACTCT+CGG 0.618357 5_4:-14290258 None:intergenic
CACGTGAAAGAGTTCAGTGA+AGG 0.621136 5_4:+14287640 Msa0839380:five_prime_UTR
CTACGTTATTGAGGGAACAA+GGG 0.623719 5_4:+14288786 Msa0839380:CDS
GCACAACCTAGTTATGCTAA+GGG 0.624854 5_4:+14289025 Msa0839380:CDS
CATGGAAGGAGGAATCTCAC+AGG 0.638936 5_4:+14287720 Msa0839380:CDS
AGGAGTTGTAGCAAGATGAG+TGG 0.639871 5_4:-14287800 None:intergenic
TCCAACATATATGATCTCAT+CGG 0.642003 5_4:-14294797 None:intergenic
GAATGTTGAGAACATAACCA+TGG 0.644534 5_4:-14290063 None:intergenic
AACATGCCCTTAGCATAACT+AGG 0.649459 5_4:-14289031 None:intergenic
TCGTGTCAGATAGGACAACA+TGG 0.649827 5_4:-14294754 None:intergenic
TCGCAACCGACTTAGAAGAA+GGG 0.656070 5_4:+14294447 Msa0839380:CDS
ATTAGAAACAAAGCTACCAA+CGG 0.659190 5_4:-14290195 None:intergenic
TATTCTACAAACTTAATGAG+AGG 0.660292 5_4:-14294601 None:intergenic
TTCAAGATAAGATAATTGAG+TGG 0.660309 5_4:-14294943 None:intergenic
AAAGCTACCAACGGATCCAG+CGG 0.665155 5_4:-14290186 None:intergenic
CGTGTCAGATAGGACAACAT+GGG 0.666127 5_4:-14294753 None:intergenic
TATGCAGCAGAAGGCGCACG+AGG 0.673682 5_4:+14289073 Msa0839380:CDS
CCAAAAGTGGAACAAGTCCA+CGG 0.677014 5_4:-14289202 None:intergenic
GCAACAACATCCAACTCTAG+GGG 0.686433 5_4:+14294717 Msa0839380:three_prime_UTR
AAGAAGTTCCAACAAAATGG+GGG 0.689869 5_4:+14287440 Msa0839380:five_prime_UTR
TCTCACAGGAATTAACGCCA+AGG 0.701621 5_4:+14287734 Msa0839380:CDS
ATGCAGCAGAAGGCGCACGA+GGG 0.753181 5_4:+14289074 Msa0839380:CDS
ACTGCTTGCAGATTCTACCG+TGG 0.755591 5_4:+14289185 Msa0839380:intron
ACTGAAGAAAGAGATCATGG+CGG 0.814899 5_4:+14287696 Msa0839380:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATACTGTAATATTTAATT+GGG - chr5_4:14288754-14288773 None:intergenic 10.0%
!! CAAAATCAAATTATATTATT+TGG + chr5_4:14292813-14292832 Msa0839380:intron 10.0%
!! ATTTCTTTACTTATTTAATT+AGG + chr5_4:14292985-14293004 Msa0839380:intron 10.0%
!! CAAATTATAAAAAAGAATAA+GGG + chr5_4:14293345-14293364 Msa0839380:intron 10.0%
!! ATTTAACATTCAAATTTATT+TGG + chr5_4:14294189-14294208 Msa0839380:intron 10.0%
!! TTTAACATTCAAATTTATTT+GGG + chr5_4:14294190-14294209 Msa0839380:intron 10.0%
!! TATATTGTTACTAAACATTA+GGG - chr5_4:14288006-14288025 None:intergenic 15.0%
!! ATATATTGTTACTAAACATT+AGG - chr5_4:14288007-14288026 None:intergenic 15.0%
!! ATATATTGTTACTAAACATT+AGG - chr5_4:14288007-14288026 None:intergenic 15.0%
!! ATGTTTAGTAACAATATATT+TGG + chr5_4:14288317-14288336 Msa0839380:intron 15.0%
!!! TATTTTGTTACTAAACATTA+GGG - chr5_4:14288392-14288411 None:intergenic 15.0%
!!! AAAACAGATTAGTTTTTTTT+TGG + chr5_4:14288418-14288437 Msa0839380:intron 15.0%
!!! AAACAGATTAGTTTTTTTTT+GGG + chr5_4:14288419-14288438 Msa0839380:intron 15.0%
!! ATAAAAAATGTGGAAAAATT+TGG + chr5_4:14288482-14288501 Msa0839380:intron 15.0%
!! TAAAAAATGTGGAAAAATTT+GGG + chr5_4:14288483-14288502 Msa0839380:intron 15.0%
!! GAAATACTGTAATATTTAAT+TGG - chr5_4:14288755-14288774 None:intergenic 15.0%
!! TAAATATGACTTAAAAGTTT+AGG - chr5_4:14290507-14290526 None:intergenic 15.0%
!!! AATATTTTTGTCATATTGTT+AGG - chr5_4:14291403-14291422 None:intergenic 15.0%
!! TTATTGAATGAATATTAGAA+AGG + chr5_4:14292081-14292100 Msa0839380:intron 15.0%
!! TATTGAATGAATATTAGAAA+GGG + chr5_4:14292082-14292101 Msa0839380:intron 15.0%
!!! TGTCTTTTAATATATTTGTA+GGG - chr5_4:14292187-14292206 None:intergenic 15.0%
!!! AAATTGTAAGCTTTAATTTA+AGG + chr5_4:14292877-14292896 Msa0839380:intron 15.0%
!!! AATTGTAAGCTTTAATTTAA+GGG + chr5_4:14292878-14292897 Msa0839380:intron 15.0%
!! AAATGTGAAACTAATATTAA+GGG - chr5_4:14292949-14292968 None:intergenic 15.0%
!! AAAATGTGAAACTAATATTA+AGG - chr5_4:14292950-14292969 None:intergenic 15.0%
!! TTACTTATTTAATTAGGATT+AGG + chr5_4:14292991-14293010 Msa0839380:intron 15.0%
!! TACTTATTTAATTAGGATTA+GGG + chr5_4:14292992-14293011 Msa0839380:intron 15.0%
!!! CCTTATTCTTTTTTATAATT+TGG - chr5_4:14293347-14293366 None:intergenic 15.0%
!! CCAAATTATAAAAAAGAATA+AGG + chr5_4:14293344-14293363 Msa0839380:intron 15.0%
!!! ATTTTGATTGTTATGTAATA+AGG + chr5_4:14293745-14293764 Msa0839380:intron 15.0%
!!! TTTTGATTGTTATGTAATAA+GGG + chr5_4:14293746-14293765 Msa0839380:intron 15.0%
!! TTAACATTCAAATTTATTTG+GGG + chr5_4:14294191-14294210 Msa0839380:intron 15.0%
!! AGAAAAAGAAAGAAAATTAG+AGG - chr5_4:14287566-14287585 None:intergenic 20.0%
!!! CTTTTTTAGTTTGTTTGATT+AGG + chr5_4:14287911-14287930 Msa0839380:intron 20.0%
!!! TTTGATTAGGTTTTAGAAAT+GGG + chr5_4:14287924-14287943 Msa0839380:intron 20.0%
!! ATGTTTAGTAACAATATATG+TGG + chr5_4:14288008-14288027 Msa0839380:intron 20.0%
!! AACAATATATGTGGAAAAAT+AGG + chr5_4:14288017-14288036 Msa0839380:intron 20.0%
!! TAAATTGCTACTAAACAATA+GGG - chr5_4:14288155-14288174 None:intergenic 20.0%
!! ATAAATTGCTACTAAACAAT+AGG - chr5_4:14288156-14288175 None:intergenic 20.0%
!!! ATTTGGATAAACAGTTTTTT+TGG + chr5_4:14288334-14288353 Msa0839380:intron 20.0%
!!! TTTGGATAAACAGTTTTTTT+GGG + chr5_4:14288335-14288354 Msa0839380:intron 20.0%
!!! GTATTTTGTTACTAAACATT+AGG - chr5_4:14288393-14288412 None:intergenic 20.0%
!! ATGTTTAGTAACAAAATACA+TGG + chr5_4:14288394-14288413 Msa0839380:intron 20.0%
!!! AACAGATTAGTTTTTTTTTG+GGG + chr5_4:14288420-14288439 Msa0839380:intron 20.0%
!! AAATCATTCTCAAACATAAA+GGG - chr5_4:14288449-14288468 None:intergenic 20.0%
!! AAAATCATTCTCAAACATAA+AGG - chr5_4:14288450-14288469 None:intergenic 20.0%
!! AAGATCAATTCTAAACATTA+GGG - chr5_4:14288679-14288698 None:intergenic 20.0%
!! TTAAATAAAGTTTCAAGAGA+TGG - chr5_4:14289252-14289271 None:intergenic 20.0%
!!! GTTAAAGTATTATTTATCTG+TGG + chr5_4:14290564-14290583 Msa0839380:intron 20.0%
!! ACTTAAATTCAAAATCTACA+AGG + chr5_4:14290847-14290866 Msa0839380:intron 20.0%
!!! ACTTTATTTTCTTGTAAAGT+TGG + chr5_4:14292014-14292033 Msa0839380:intron 20.0%
!!! GTCTTTTAATATATTTGTAG+GGG - chr5_4:14292186-14292205 None:intergenic 20.0%
!!! CTGTCTTTTAATATATTTGT+AGG - chr5_4:14292188-14292207 None:intergenic 20.0%
!!! TTTGATTTTGAAAATTAGCT+GGG - chr5_4:14292803-14292822 None:intergenic 20.0%
!!! ATTTGATTTTGAAAATTAGC+TGG - chr5_4:14292804-14292823 None:intergenic 20.0%
!!! ATTGTAAGCTTTAATTTAAG+GGG + chr5_4:14292879-14292898 Msa0839380:intron 20.0%
!!! GGATTTTTTAAGATTAAAAG+AGG - chr5_4:14293458-14293477 None:intergenic 20.0%
!! TGCTTAACATAGTATATATT+AGG + chr5_4:14293543-14293562 Msa0839380:intron 20.0%
!!! ATGTGAAATTTTGATTGATA+AGG - chr5_4:14293885-14293904 None:intergenic 20.0%
!! CAATCAAAATTTCACATAAA+TGG + chr5_4:14293888-14293907 Msa0839380:intron 20.0%
!!! AATGACACAAATTATTTCTT+TGG - chr5_4:14293941-14293960 None:intergenic 20.0%
!!! AATTTGTGTCATTTATCTTT+TGG + chr5_4:14293948-14293967 Msa0839380:intron 20.0%
!! ACATATAAATGAGTTGTATT+GGG - chr5_4:14294095-14294114 None:intergenic 20.0%
!! CTGAAAAGTTTCTTATAATA+AGG - chr5_4:14294357-14294376 None:intergenic 20.0%
!! AATACTCATTAACATTATCT+TGG + chr5_4:14294973-14294992 Msa0839380:three_prime_UTR 20.0%
!!! TCCACAATTTTTGATATTAT+TGG + chr5_4:14295010-14295029 Msa0839380:three_prime_UTR 20.0%
!! TCCAATAATATCAAAAATTG+TGG - chr5_4:14295014-14295033 None:intergenic 20.0%
! TTAACTTTCAAAACATCAAG+AGG - chr5_4:14287823-14287842 None:intergenic 25.0%
!!! GTTTGATTAGGTTTTAGAAA+TGG + chr5_4:14287923-14287942 Msa0839380:intron 25.0%
!!! TTGATTAGGTTTTAGAAATG+GGG + chr5_4:14287925-14287944 Msa0839380:intron 25.0%
! AATCATACTCAAACACAAAA+GGG - chr5_4:14287978-14287997 None:intergenic 25.0%
! AAATCATACTCAAACACAAA+AGG - chr5_4:14287979-14287998 None:intergenic 25.0%
! AAATCACTCTCAAACATAAA+GGG - chr5_4:14288057-14288076 None:intergenic 25.0%
! AAAATCACTCTCAAACATAA+AGG - chr5_4:14288058-14288077 None:intergenic 25.0%
!!! GTGGAAAAGTTGAAATTTTT+TGG + chr5_4:14288098-14288117 Msa0839380:intron 25.0%
! TTGTTTAGTAGCAATTTATG+TGG + chr5_4:14288157-14288176 Msa0839380:intron 25.0%
! TGTTTAGTAGCAATTTATGT+GGG + chr5_4:14288158-14288177 Msa0839380:intron 25.0%
! GTGGGAAAATTGAATATTTA+TGG + chr5_4:14288258-14288277 Msa0839380:intron 25.0%
!! TATTTATGGTTACCCTTTTA+TGG + chr5_4:14288272-14288291 Msa0839380:intron 25.0%
! ACACTAATGCATAAAAAATG+TGG + chr5_4:14288472-14288491 Msa0839380:intron 25.0%
! CAAGATCAATTCTAAACATT+AGG - chr5_4:14288680-14288699 None:intergenic 25.0%
! TATTTAATCTTGCACTAGTT+AGG + chr5_4:14289265-14289284 Msa0839380:intron 25.0%
! ATTTAATCTTGCACTAGTTA+GGG + chr5_4:14289266-14289285 Msa0839380:intron 25.0%
! TATACTTAAAGATGTTTAGC+TGG + chr5_4:14289388-14289407 Msa0839380:intron 25.0%
! TATACTTAAAGATGTTTAGC+TGG + chr5_4:14289388-14289407 Msa0839380:intron 25.0%
!! TTTCTCTTTGGTATATGTTT+TGG + chr5_4:14289519-14289538 Msa0839380:intron 25.0%
! TTTGGTATCTTTATCATATC+TGG + chr5_4:14289537-14289556 Msa0839380:intron 25.0%
! TATTTGATTGATCAGGTTAT+AGG + chr5_4:14289640-14289659 Msa0839380:intron 25.0%
! ATTTGATTGATCAGGTTATA+GGG + chr5_4:14289641-14289660 Msa0839380:intron 25.0%
!! AAGTATTCAGTCTATTCTTT+TGG + chr5_4:14289745-14289764 Msa0839380:intron 25.0%
!!! AGTATCCTGTTTTTTTTTGT+TGG + chr5_4:14290033-14290052 Msa0839380:intron 25.0%
! CAATGTTGTCAAAAGAAAAA+AGG + chr5_4:14290112-14290131 Msa0839380:CDS 25.0%
!!! ATTGTGTTCCACTTATTTTA+TGG + chr5_4:14290338-14290357 Msa0839380:intron 25.0%
! AGCAAAGTAAAAGACAAAAT+TGG + chr5_4:14290592-14290611 Msa0839380:intron 25.0%
!! TAACTGTTGATTATTGAGTT+TGG + chr5_4:14290660-14290679 Msa0839380:intron 25.0%
! CTGCGTATTTGTTTAAAAAT+TGG - chr5_4:14290964-14290983 None:intergenic 25.0%
!! AGATTTTATGACACTCAATT+TGG - chr5_4:14291220-14291239 None:intergenic 25.0%
!! AGAGCATATTTTATCTCTTA+AGG + chr5_4:14291444-14291463 Msa0839380:intron 25.0%
! TTGACTCTAGTATTAAAGTA+AGG + chr5_4:14291518-14291537 Msa0839380:intron 25.0%
! TGACTCTAGTATTAAAGTAA+GGG + chr5_4:14291519-14291538 Msa0839380:intron 25.0%
! TAACTTAAAAACACAATACG+AGG - chr5_4:14291604-14291623 None:intergenic 25.0%
! ATTATTAGAGAGTGACAAAT+CGG + chr5_4:14292290-14292309 Msa0839380:intron 25.0%
! TATTTACTAGTCGTATTTGT+AGG - chr5_4:14292544-14292563 None:intergenic 25.0%
!!! TTTAATTTAAGGGGTATTGT+TGG + chr5_4:14292888-14292907 Msa0839380:intron 25.0%
! ACTTCAGATTATGATGAATA+TGG - chr5_4:14293420-14293439 None:intergenic 25.0%
! TTAAGTGTAGAAGAAGTTAT+AGG - chr5_4:14293479-14293498 None:intergenic 25.0%
! TATATACTATGTTAAGCAGA+AGG - chr5_4:14293541-14293560 None:intergenic 25.0%
! TGTAATAAGGGAATCAATTT+AGG + chr5_4:14293758-14293777 Msa0839380:intron 25.0%
! GTAATAAGGGAATCAATTTA+GGG + chr5_4:14293759-14293778 Msa0839380:intron 25.0%
! TAATAAGGGAATCAATTTAG+GGG + chr5_4:14293760-14293779 Msa0839380:intron 25.0%
!!! AGAGTAGTTTTGTTGAAATA+CGG + chr5_4:14293986-14294005 Msa0839380:intron 25.0%
! CACATATAAATGAGTTGTAT+TGG - chr5_4:14294096-14294115 None:intergenic 25.0%
! AAGTTTCTTATAATAAGGAC+TGG - chr5_4:14294352-14294371 None:intergenic 25.0%
!!! TAAATATTTTGAAACCTTGC+AGG + chr5_4:14294408-14294427 Msa0839380:intron 25.0%
! TATTCTACAAACTTAATGAG+AGG - chr5_4:14294604-14294623 None:intergenic 25.0%
! CTCATTAAGTTTGTAGAATA+TGG + chr5_4:14294604-14294623 Msa0839380:three_prime_UTR 25.0%
! TTCAAGATAAGATAATTGAG+TGG - chr5_4:14294946-14294965 None:intergenic 25.0%
!!! TGTTTTGAAAGTTAACATGC+AGG + chr5_4:14287828-14287847 Msa0839380:CDS 30.0%
!!! TGATTAGGTTTTAGAAATGG+GGG + chr5_4:14287926-14287945 Msa0839380:intron 30.0%
! ACACTAATGGACAAAATATG+TGG + chr5_4:14288079-14288098 Msa0839380:intron 30.0%
!!! ATTTTTTGGCTAACCTTTCA+TGG + chr5_4:14288112-14288131 Msa0839380:intron 30.0%
AAATCATTCTCATCCATGAA+AGG - chr5_4:14288128-14288147 None:intergenic 30.0%
! TTCATGGATGAGAATGATTT+TGG + chr5_4:14288128-14288147 Msa0839380:intron 30.0%
ACATAACTCTCAAGCATAAA+GGG - chr5_4:14288216-14288235 None:intergenic 30.0%
AACATAACTCTCAAGCATAA+AGG - chr5_4:14288217-14288236 None:intergenic 30.0%
AGAGTTATGTTTCACACTAA+TGG + chr5_4:14288226-14288245 Msa0839380:intron 30.0%
! ACACTAATGGACAAAAAATG+TGG + chr5_4:14288239-14288258 Msa0839380:intron 30.0%
! CACTAATGGACAAAAAATGT+GGG + chr5_4:14288240-14288259 Msa0839380:intron 30.0%
ATTCATTCGCATCCATAAAA+GGG - chr5_4:14288287-14288306 None:intergenic 30.0%
AATTCATTCGCATCCATAAA+AGG - chr5_4:14288288-14288307 None:intergenic 30.0%
! GTGGAAAACTTGACTATTTT+TGG + chr5_4:14288627-14288646 Msa0839380:intron 30.0%
TGGAAAATCATTCTCACAAA+GGG - chr5_4:14288656-14288675 None:intergenic 30.0%
ATCAATTCTAAACATTAGGG+TGG - chr5_4:14288676-14288695 None:intergenic 30.0%
GTTCGCGTTATCATATTTAA+TGG + chr5_4:14288699-14288718 Msa0839380:intron 30.0%
! TGGTCTCTACGAATATTTTA+AGG + chr5_4:14288877-14288896 Msa0839380:CDS 30.0%
!! GGTCTCTACGAATATTTTAA+GGG + chr5_4:14288878-14288897 Msa0839380:CDS 30.0%
AAATGGACATAGAGCTAAAT+TGG - chr5_4:14288981-14289000 None:intergenic 30.0%
! ATTTGAAGCTGTTAAAGTCA+GGG + chr5_4:14288997-14289016 Msa0839380:CDS 30.0%
AAAGATGTTTAGCTGGAAAT+TGG + chr5_4:14289395-14289414 Msa0839380:intron 30.0%
ATATACCAAAGAGAAAAGCA+AGG - chr5_4:14289515-14289534 None:intergenic 30.0%
AAAATTTCCAGACACTAAGT+AGG - chr5_4:14289563-14289582 None:intergenic 30.0%
GAGAAACTATTTGATTGATC+AGG + chr5_4:14289633-14289652 Msa0839380:intron 30.0%
! TTGTTAGTTTATCAACCAAC+TGG - chr5_4:14289676-14289695 None:intergenic 30.0%
!! AACTTCTTTAAAGCTAAGCA+TGG + chr5_4:14289850-14289869 Msa0839380:intron 30.0%
ACTGTCCAACAAAAAAAAAC+AGG - chr5_4:14290041-14290060 None:intergenic 30.0%
TGTTGTCAAAAGAAAAAAGG+AGG + chr5_4:14290115-14290134 Msa0839380:CDS 30.0%
ATTAGAAACAAAGCTACCAA+CGG - chr5_4:14290198-14290217 None:intergenic 30.0%
TTGCTTCTTTGCAATTCATT+TGG + chr5_4:14290279-14290298 Msa0839380:intron 30.0%
AAGACTCCTGGTAAATAAAT+TGG - chr5_4:14290389-14290408 None:intergenic 30.0%
AACCATTGCAAAGTTATAGA+AGG - chr5_4:14290436-14290455 None:intergenic 30.0%
! TACGACACTATCAAAGTTTT+AGG + chr5_4:14290460-14290479 Msa0839380:CDS 30.0%
! TCAAAATCGAGATTTTGCTT+AGG + chr5_4:14290713-14290732 Msa0839380:intron 30.0%
AAGTGTTTGTAGTGATTGAA+AGG - chr5_4:14290821-14290840 None:intergenic 30.0%
! GTGTAATACTACTTTAGCTT+AGG - chr5_4:14290903-14290922 None:intergenic 30.0%
!! CCTATTTTTCTGGATGAAAA+TGG - chr5_4:14291072-14291091 None:intergenic 30.0%
! CCATTTTCATCCAGAAAAAT+AGG + chr5_4:14291069-14291088 Msa0839380:intron 30.0%
!! TGCTAGAAAACCTATTTTTC+TGG - chr5_4:14291082-14291101 None:intergenic 30.0%
!! CAATCAGCAATCATTTTTGT+GGG - chr5_4:14291124-14291143 None:intergenic 30.0%
!! TCAATCAGCAATCATTTTTG+TGG - chr5_4:14291125-14291144 None:intergenic 30.0%
TTTATGACACTCAATTTGGT+AGG - chr5_4:14291216-14291235 None:intergenic 30.0%
AAAAGACTAGTACATTAGGT+GGG - chr5_4:14291352-14291371 None:intergenic 30.0%
!!! ACCTAATGTACTAGTCTTTT+GGG + chr5_4:14291352-14291371 Msa0839380:intron 30.0%
CACAACTAAGACAAAAACAA+TGG - chr5_4:14291800-14291819 None:intergenic 30.0%
!!! TGTTGTTTTTGTCTTAGTTG+TGG + chr5_4:14291818-14291837 Msa0839380:intron 30.0%
!!! GTGGACACATTTAGTTTTTA+AGG + chr5_4:14291860-14291879 Msa0839380:intron 30.0%
AACAAGAATCAATTTGACGA+CGG - chr5_4:14291887-14291906 None:intergenic 30.0%
AATATTAGAAAGGGATCCTT+AGG + chr5_4:14292091-14292110 Msa0839380:intron 30.0%
TTATTAGAGAGTGACAAATC+GGG + chr5_4:14292291-14292310 Msa0839380:intron 30.0%
TTTGTAGGTTTAGACTAATC+TGG - chr5_4:14292529-14292548 None:intergenic 30.0%
TTCAATCGGATATTCAGATA+TGG + chr5_4:14292597-14292616 Msa0839380:intron 30.0%
!! AGAAGCACTAAATGACTTAT+GGG - chr5_4:14292648-14292667 None:intergenic 30.0%
!! AAGAAGCACTAAATGACTTA+TGG - chr5_4:14292649-14292668 None:intergenic 30.0%
TCTTCATTCTTTGTTCCATT+AGG + chr5_4:14292665-14292684 Msa0839380:intron 30.0%
CTTCATTCTTTGTTCCATTA+GGG + chr5_4:14292666-14292685 Msa0839380:intron 30.0%
ATGTGATATGGGTTTATAAG+TGG + chr5_4:14293269-14293288 Msa0839380:intron 30.0%
AAGATTAAAAGAGGAGAGAA+AGG - chr5_4:14293449-14293468 None:intergenic 30.0%
TTCTTCTACACTTAATAGAC+TGG + chr5_4:14293484-14293503 Msa0839380:intron 30.0%
!! ATATAAGTTGATTGACACAG+TGG - chr5_4:14293663-14293682 None:intergenic 30.0%
!!! GCAATGTTATTTTTTCGTGA+AGG + chr5_4:14293782-14293801 Msa0839380:intron 30.0%
TTACGTATGAGCATAAATGT+TGG + chr5_4:14293853-14293872 Msa0839380:intron 30.0%
!!! GAGTAGTTTTGTTGAAATAC+GGG + chr5_4:14293987-14294006 Msa0839380:intron 30.0%
TTCTTATAATAAGGACTGGA+GGG - chr5_4:14294348-14294367 None:intergenic 30.0%
TTTCTTATAATAAGGACTGG+AGG - chr5_4:14294349-14294368 None:intergenic 30.0%
TGGTTCAGAAAACTCAAAAA+AGG + chr5_4:14294624-14294643 Msa0839380:three_prime_UTR 30.0%
CAGAAAACTCAAAAAAGGTT+TGG + chr5_4:14294629-14294648 Msa0839380:three_prime_UTR 30.0%
!! ATATTTTTGAGCTTAGCTAG+TGG + chr5_4:14294666-14294685 Msa0839380:three_prime_UTR 30.0%
TCCAACATATATGATCTCAT+CGG - chr5_4:14294800-14294819 None:intergenic 30.0%
TCAGTATGATACATTACTTC+TGG - chr5_4:14294830-14294849 None:intergenic 30.0%
!!! CAAGTTACCATTTTTGGTTT+TGG + chr5_4:14294901-14294920 Msa0839380:three_prime_UTR 30.0%
AAGAAGTTCCAACAAAATGG+GGG + chr5_4:14287440-14287459 Msa0839380:five_prime_UTR 35.0%
TAGGGCAATTAACATTAAGC+AGG + chr5_4:14287477-14287496 Msa0839380:five_prime_UTR 35.0%
GAGTTCAGTGAAGGAATAAA+TGG + chr5_4:14287649-14287668 Msa0839380:five_prime_UTR 35.0%
AAGGAATAAATGGAGCTAAC+AGG + chr5_4:14287659-14287678 Msa0839380:five_prime_UTR 35.0%
TACACTGAAGAAAGAGATCA+TGG + chr5_4:14287693-14287712 Msa0839380:exon 35.0%
! GAGAGTGATTTTCACACTAA+TGG + chr5_4:14288066-14288085 Msa0839380:intron 35.0%
TAGTAGCAATTTATGTGGGA+TGG + chr5_4:14288162-14288181 Msa0839380:intron 35.0%
GGTTAAGACAGAACAAAATG+TGG + chr5_4:14288608-14288627 Msa0839380:intron 35.0%
GTGGAAAATCATTCTCACAA+AGG - chr5_4:14288657-14288676 None:intergenic 35.0%
CGCGTTATCATATTTAATGG+AGG + chr5_4:14288702-14288721 Msa0839380:intron 35.0%
GAAGTGATGTTGTTACATGT+AGG + chr5_4:14288724-14288743 Msa0839380:intron 35.0%
GTGCTTTACTACGTTATTGA+GGG + chr5_4:14288778-14288797 Msa0839380:CDS 35.0%
AATATACAAGACTTCTGTGC+TGG - chr5_4:14288928-14288947 None:intergenic 35.0%
CTGACTTTAACAGCTTCAAA+TGG - chr5_4:14288998-14289017 None:intergenic 35.0%
! CATTTGAAGCTGTTAAAGTC+AGG + chr5_4:14288996-14289015 Msa0839380:CDS 35.0%
CTTGATGTGCATCTATCTTT+AGG + chr5_4:14289128-14289147 Msa0839380:intron 35.0%
CAAGAGATGGTGAAATTACA+TGG - chr5_4:14289239-14289258 None:intergenic 35.0%
CATGAACACTATCTTTATGC+TGG + chr5_4:14289321-14289340 Msa0839380:intron 35.0%
TTATTGTTAGTCACATGCTG+AGG + chr5_4:14289607-14289626 Msa0839380:intron 35.0%
CACTATTACAACATAGTCAC+AGG - chr5_4:14289793-14289812 None:intergenic 35.0%
GAGTGTTCAGTATATTCTTC+TGG + chr5_4:14289874-14289893 Msa0839380:intron 35.0%
!! TTTTGACTAAGTTCCTGTGA+TGG + chr5_4:14289931-14289950 Msa0839380:intron 35.0%
ACAAATTTCATCACCATCAC+AGG - chr5_4:14289947-14289966 None:intergenic 35.0%
! TTTTTGTTGGACAGTTTCCA+TGG + chr5_4:14290046-14290065 Msa0839380:intron 35.0%
GAATGTTGAGAACATAACCA+TGG - chr5_4:14290066-14290085 None:intergenic 35.0%
AAATACCAGAACAAGACTCT+CGG - chr5_4:14290261-14290280 None:intergenic 35.0%
!!! TGTTCCACTTATTTTATGGC+AGG + chr5_4:14290342-14290361 Msa0839380:intron 35.0%
ATAGCCTGCCATAAAATAAG+TGG - chr5_4:14290349-14290368 None:intergenic 35.0%
TCTTCCTATTAGAATGTTGC+TGG + chr5_4:14290405-14290424 Msa0839380:CDS 35.0%
GTCCTTCTATAACTTTGCAA+TGG + chr5_4:14290431-14290450 Msa0839380:CDS 35.0%
!!! GACACTATCAAAGTTTTAGG+CGG + chr5_4:14290463-14290482 Msa0839380:CDS 35.0%
TGCAACAGAGCAAACTATAA+AGG - chr5_4:14290532-14290551 None:intergenic 35.0%
GAAGTGAACCTTAATGTTAG+AGG + chr5_4:14290682-14290701 Msa0839380:intron 35.0%
CTACTTTGCCTCTAACATTA+AGG - chr5_4:14290693-14290712 None:intergenic 35.0%
! ATCGAGATTTTGCTTAGGAT+CGG + chr5_4:14290718-14290737 Msa0839380:intron 35.0%
! ATTTTGCTTAGGATCGGAAA+GGG + chr5_4:14290724-14290743 Msa0839380:intron 35.0%
GCTGCTTAACAACTCTAAAT+AGG + chr5_4:14290923-14290942 Msa0839380:intron 35.0%
!! AAATAGGTTTTCTAGCAACC+AGG + chr5_4:14291085-14291104 Msa0839380:intron 35.0%
AAAAATCACGATCTTGACTG+TGG + chr5_4:14291301-14291320 Msa0839380:intron 35.0%
CAAAAGACTAGTACATTAGG+TGG - chr5_4:14291353-14291372 None:intergenic 35.0%
!!! CACCTAATGTACTAGTCTTT+TGG + chr5_4:14291351-14291370 Msa0839380:intron 35.0%
ACCCAAAAGACTAGTACATT+AGG - chr5_4:14291356-14291375 None:intergenic 35.0%
!!! AATGTACTAGTCTTTTGGGT+CGG + chr5_4:14291356-14291375 Msa0839380:intron 35.0%
ATACGAGGATAACATAACAG+AGG - chr5_4:14291589-14291608 None:intergenic 35.0%
ATGCCAAAAAGATCACACAA+TGG - chr5_4:14291631-14291650 None:intergenic 35.0%
GTTTGATATTGTCTCAGTTG+CGG + chr5_4:14291711-14291730 Msa0839380:intron 35.0%
AATACCATTGCAAACTGCAA+TGG - chr5_4:14291756-14291775 None:intergenic 35.0%
!! TGCAATGGTATTTTTGTGTG+TGG + chr5_4:14291764-14291783 Msa0839380:intron 35.0%
AAACTAAATGTGTCCACCAA+TGG - chr5_4:14291857-14291876 None:intergenic 35.0%
GACGAAGAAACAAGCAATAA+AGG + chr5_4:14291928-14291947 Msa0839380:intron 35.0%
TGCATCATTTACTTCCATCA+AGG - chr5_4:14291959-14291978 None:intergenic 35.0%
CTTTGTTCTTTCTTCCTCAA+AGG - chr5_4:14291990-14292009 None:intergenic 35.0%
!!! ACTATTTCGTTTTGGAGAAG+AGG + chr5_4:14292139-14292158 Msa0839380:intron 35.0%
!!! CTATTTCGTTTTGGAGAAGA+GGG + chr5_4:14292140-14292159 Msa0839380:intron 35.0%
!!! CCTAGTAATCTCCTTGTTTT+GGG - chr5_4:14292413-14292432 None:intergenic 35.0%
!! ACCTAGTAATCTCCTTGTTT+TGG - chr5_4:14292414-14292433 None:intergenic 35.0%
TCTATTAAAGTAGCACCTAC+TGG + chr5_4:14292470-14292489 Msa0839380:intron 35.0%
ACATCACGTAACTCTTCAAT+CGG + chr5_4:14292583-14292602 Msa0839380:intron 35.0%
TAGGATTAGGGATCTTGTAT+TGG + chr5_4:14293004-14293023 Msa0839380:intron 35.0%
TCGATCCAATCTGAATTCTA+AGG + chr5_4:14293132-14293151 Msa0839380:intron 35.0%
! ATCCAATCTGAATTCTAAGG+CGG + chr5_4:14293135-14293154 Msa0839380:intron 35.0%
TCCCATATTGGATGTGATAT+GGG + chr5_4:14293258-14293277 Msa0839380:intron 35.0%
ACCCATATCACATCCAATAT+GGG - chr5_4:14293262-14293281 None:intergenic 35.0%
AACCCATATCACATCCAATA+TGG - chr5_4:14293263-14293282 None:intergenic 35.0%
GTTAAGCAGAAGGTAATTGA+TGG - chr5_4:14293531-14293550 None:intergenic 35.0%
! GTGAAGGCATGTTTATTTGA+TGG + chr5_4:14293798-14293817 Msa0839380:intron 35.0%
CTAAACATGAACAAGCTATG+AGG - chr5_4:14294031-14294050 None:intergenic 35.0%
!! CTCATAGCTTGTTCATGTTT+AGG + chr5_4:14294029-14294048 Msa0839380:intron 35.0%
!! TAGCTTGTTCATGTTTAGGT+TGG + chr5_4:14294033-14294052 Msa0839380:intron 35.0%
! AGCTTGTTCATGTTTAGGTT+GGG + chr5_4:14294034-14294053 Msa0839380:intron 35.0%
TTAGTTGTCCATGTAACAAG+CGG + chr5_4:14294064-14294083 Msa0839380:intron 35.0%
TCTTATAATAAGGACTGGAG+GGG - chr5_4:14294347-14294366 None:intergenic 35.0%
CAAAAAAGGTTTGGATGAGA+TGG + chr5_4:14294638-14294657 Msa0839380:three_prime_UTR 35.0%
GTTGTTGCATTCACAAGAAT+TGG - chr5_4:14294705-14294724 None:intergenic 35.0%
ACTAATCTTTCGTGTCAGAT+AGG - chr5_4:14294766-14294785 None:intergenic 35.0%
TTTATTAGCAATGCTTGTGC+TGG + chr5_4:14294878-14294897 Msa0839380:three_prime_UTR 35.0%
AGTATGGCCAAAACCAAAAA+TGG - chr5_4:14294911-14294930 None:intergenic 35.0%
! AAAGAATGCCCCCATTTTGT+TGG - chr5_4:14287451-14287470 None:intergenic 40.0%
!! GGGGCATTCTTTGACTTTTA+GGG + chr5_4:14287459-14287478 Msa0839380:five_prime_UTR 40.0%
ACTGAAGAAAGAGATCATGG+CGG + chr5_4:14287696-14287715 Msa0839380:exon 40.0%
TATTATGCCCTTTGCACCAT+TGG + chr5_4:14287757-14287776 Msa0839380:CDS 40.0%
!!! TTTTTTTGGGCTGCCCTTTT+AGG + chr5_4:14288348-14288367 Msa0839380:intron 40.0%
AATCACTCCCAGACCTAAAA+GGG - chr5_4:14288364-14288383 None:intergenic 40.0%
AAATCACTCCCAGACCTAAA+AGG - chr5_4:14288365-14288384 None:intergenic 40.0%
TTTCTGAGTTTGAACCTGAC+TGG + chr5_4:14288508-14288527 Msa0839380:intron 40.0%
AACCTGACTGGAACAATCAT+TGG + chr5_4:14288520-14288539 Msa0839380:intron 40.0%
TGACTGGAACAATCATTGGT+CGG + chr5_4:14288524-14288543 Msa0839380:intron 40.0%
AGCTGAACTCTTAGACTATC+AGG + chr5_4:14288563-14288582 Msa0839380:intron 40.0%
GCTGAACTCTTAGACTATCA+GGG + chr5_4:14288564-14288583 Msa0839380:intron 40.0%
CGTGCTTTACTACGTTATTG+AGG + chr5_4:14288777-14288796 Msa0839380:CDS 40.0%
ACTACGTTATTGAGGGAACA+AGG + chr5_4:14288785-14288804 Msa0839380:CDS 40.0%
CTACGTTATTGAGGGAACAA+GGG + chr5_4:14288786-14288805 Msa0839380:CDS 40.0%
GGGAGTTTACTCCAATGTAT+TGG + chr5_4:14288898-14288917 Msa0839380:CDS 40.0%
AGCACAACCTAGTTATGCTA+AGG + chr5_4:14289024-14289043 Msa0839380:CDS 40.0%
GCACAACCTAGTTATGCTAA+GGG + chr5_4:14289025-14289044 Msa0839380:CDS 40.0%
AACATGCCCTTAGCATAACT+AGG - chr5_4:14289034-14289053 None:intergenic 40.0%
! TATGCTAAGGGCATGTTTGA+CGG + chr5_4:14289037-14289056 Msa0839380:CDS 40.0%
!! TTACGCCTTGCTTTTCTCTT+TGG + chr5_4:14289507-14289526 Msa0839380:intron 40.0%
! ATAGGGCATTAGTTACCAGT+TGG + chr5_4:14289658-14289677 Msa0839380:intron 40.0%
TGTTCAAAAGCTCAACAGCT+AGG + chr5_4:14290140-14290159 Msa0839380:CDS 40.0%
GAAGCTACTATATTGTCAGC+AGG - chr5_4:14290221-14290240 None:intergenic 40.0%
TGGCAGGCTATCAGAAAAAT+TGG + chr5_4:14290358-14290377 Msa0839380:intron 40.0%
GGCAGGCTATCAGAAAAATT+GGG + chr5_4:14290359-14290378 Msa0839380:intron 40.0%
! GGCTAGCCAATTTATTTACC+AGG + chr5_4:14290380-14290399 Msa0839380:CDS 40.0%
CATTCTAATAGGAAGACTCC+TGG - chr5_4:14290401-14290420 None:intergenic 40.0%
CCAACCAGCAACATTCTAAT+AGG - chr5_4:14290412-14290431 None:intergenic 40.0%
CCTATTAGAATGTTGCTGGT+TGG + chr5_4:14290409-14290428 Msa0839380:CDS 40.0%
! GATTTTGCTTAGGATCGGAA+AGG + chr5_4:14290723-14290742 Msa0839380:intron 40.0%
! TTTTGCTTAGGATCGGAAAG+GGG + chr5_4:14290725-14290744 Msa0839380:intron 40.0%
GAGTGAAGATCGTAAGTTGT+GGG + chr5_4:14290747-14290766 Msa0839380:intron 40.0%
AAGGTTGAGAAAGAGAGAGT+TGG - chr5_4:14290802-14290821 None:intergenic 40.0%
TGAAAATGGAAGCCCTAACA+CGG - chr5_4:14291058-14291077 None:intergenic 40.0%
AGGTTGTAGTGCTTGTAAGT+AGG - chr5_4:14291196-14291215 None:intergenic 40.0%
GTGGTTAGAAGATACGTGTT+AGG + chr5_4:14291320-14291339 Msa0839380:intron 40.0%
GTTAGAAGATACGTGTTAGG+AGG + chr5_4:14291323-14291342 Msa0839380:intron 40.0%
!!! ATGTACTAGTCTTTTGGGTC+GGG + chr5_4:14291357-14291376 Msa0839380:intron 40.0%
CCAAAAAGATCACACAATGG+AGG - chr5_4:14291628-14291647 None:intergenic 40.0%
! CCTCCATTGTGTGATCTTTT+TGG + chr5_4:14291625-14291644 Msa0839380:intron 40.0%
!!! TCTCAGTTGCGGTTTTGAAT+TGG + chr5_4:14291722-14291741 Msa0839380:intron 40.0%
! TGGTTTGTGAAGTGATCCAT+TGG + chr5_4:14291838-14291857 Msa0839380:intron 40.0%
TTTGTGAAGTGATCCATTGG+TGG + chr5_4:14291841-14291860 Msa0839380:intron 40.0%
CAATAAAGGTTCTGCCTTGA+TGG + chr5_4:14291942-14291961 Msa0839380:intron 40.0%
! GATGCAATTGACTTCCTTTG+AGG + chr5_4:14291973-14291992 Msa0839380:intron 40.0%
AGGGTAAAGGTTCAATCCTA+AGG - chr5_4:14292110-14292129 None:intergenic 40.0%
ATTGAACCTTTACCCTCAAG+TGG + chr5_4:14292114-14292133 Msa0839380:intron 40.0%
TTGAACCTTTACCCTCAAGT+GGG + chr5_4:14292115-14292134 Msa0839380:intron 40.0%
! AAGTGGGCACTATTTCGTTT+TGG + chr5_4:14292131-14292150 Msa0839380:intron 40.0%
TACGACTCGTCTTAAGAGTA+AGG + chr5_4:14292315-14292334 Msa0839380:intron 40.0%
AAGGATGCTGATACGAATCA+AGG + chr5_4:14292334-14292353 Msa0839380:intron 40.0%
AGGATGCTGATACGAATCAA+GGG + chr5_4:14292335-14292354 Msa0839380:intron 40.0%
GTTCTCTCACAAACTCACAA+AGG + chr5_4:14292360-14292379 Msa0839380:intron 40.0%
TCATTCGAAGTCCCAAAACA+AGG + chr5_4:14292399-14292418 Msa0839380:intron 40.0%
CCCAAAACAAGGAGATTACT+AGG + chr5_4:14292410-14292429 Msa0839380:intron 40.0%
! GACTAATCTGGCTTCTATCA+TGG - chr5_4:14292517-14292536 None:intergenic 40.0%
TTTGTTCCATTAGGGCGTAT+TGG + chr5_4:14292674-14292693 Msa0839380:intron 40.0%
TTGTTCCATTAGGGCGTATT+GGG + chr5_4:14292675-14292694 Msa0839380:intron 40.0%
CATCTGTCTTAGCTGCAATT+TGG + chr5_4:14292748-14292767 Msa0839380:intron 40.0%
TAGCTGGGACAAATCACATA+TGG - chr5_4:14292788-14292807 None:intergenic 40.0%
!! GGAGGAGGGTGTTTATAAAT+GGG + chr5_4:14293068-14293087 Msa0839380:intron 40.0%
CCTCACAAAATAGGCTTGTA+AGG - chr5_4:14293106-14293125 None:intergenic 40.0%
! CCTTACAAGCCTATTTTGTG+AGG + chr5_4:14293103-14293122 Msa0839380:intron 40.0%
CGAACTCAACCTCACAAAAT+AGG - chr5_4:14293115-14293134 None:intergenic 40.0%
TACCGCCTTAGAATTCAGAT+TGG - chr5_4:14293140-14293159 None:intergenic 40.0%
TCCGTTGGACCAATTGTAAT+CGG + chr5_4:14293177-14293196 Msa0839380:intron 40.0%
ATGTCTATTCCTAGCCATGA+GGG + chr5_4:14293221-14293240 Msa0839380:intron 40.0%
ATGTGTTGAGAGTCCCATAT+TGG + chr5_4:14293246-14293265 Msa0839380:intron 40.0%
GTCCCATATTGGATGTGATA+TGG + chr5_4:14293257-14293276 Msa0839380:intron 40.0%
GAAGACATATGTCACCTTTC+AGG + chr5_4:14293291-14293310 Msa0839380:intron 40.0%
CTAACTCAACCCCATAAAAC+CGG - chr5_4:14293317-14293336 None:intergenic 40.0%
! TTGCGTTCAGAGCTTTTCTT+TGG + chr5_4:14293711-14293730 Msa0839380:intron 40.0%
TGTTGAAATACGGGTCAAAC+TGG + chr5_4:14293996-14294015 Msa0839380:intron 40.0%
TAGTTGTCCATGTAACAAGC+GGG + chr5_4:14294065-14294084 Msa0839380:intron 40.0%
ATTTATATGTGCTAGCCCAC+TGG + chr5_4:14294105-14294124 Msa0839380:intron 40.0%
!!! GGAGGGGAGTAATTTTTTGT+TGG - chr5_4:14294331-14294350 None:intergenic 40.0%
!!! CTGCAGTCACACTTTTTTGT+TGG + chr5_4:14294494-14294513 Msa0839380:three_prime_UTR 40.0%
ATGCAACAACATCCAACTCT+AGG + chr5_4:14294715-14294734 Msa0839380:three_prime_UTR 40.0%
TGCAACAACATCCAACTCTA+GGG + chr5_4:14294716-14294735 Msa0839380:three_prime_UTR 40.0%
GCCGATGAGATCATATATGT+TGG + chr5_4:14294796-14294815 Msa0839380:three_prime_UTR 40.0%
! TGCTGGCAAGTTACCATTTT+TGG + chr5_4:14294895-14294914 Msa0839380:three_prime_UTR 40.0%
!!! TTGGTTTTGGCCATACTTCT+TGG + chr5_4:14294914-14294933 Msa0839380:three_prime_UTR 40.0%
!!! GGGGGCATTCTTTGACTTTT+AGG + chr5_4:14287458-14287477 Msa0839380:five_prime_UTR 45.0%
CACGTGAAAGAGTTCAGTGA+AGG + chr5_4:14287640-14287659 Msa0839380:five_prime_UTR 45.0%
TCTCACAGGAATTAACGCCA+AGG + chr5_4:14287734-14287753 Msa0839380:CDS 45.0%
! GTGCAAAGGGCATAATACCT+TGG - chr5_4:14287754-14287773 None:intergenic 45.0%
CATTCCTCCAATGGTGCAAA+GGG - chr5_4:14287767-14287786 None:intergenic 45.0%
AGGAGTTGTAGCAAGATGAG+TGG - chr5_4:14287803-14287822 None:intergenic 45.0%
!!! AGGTTTTAGAAATGGGGGAG+TGG + chr5_4:14287931-14287950 Msa0839380:intron 45.0%
GACCAATGATTGTTCCAGTC+AGG - chr5_4:14288525-14288544 None:intergenic 45.0%
AGTCTAAGAGTTCAGCTGAG+AGG - chr5_4:14288560-14288579 None:intergenic 45.0%
ACAGGCAAGTTCTTTGGCTA+TGG + chr5_4:14288833-14288852 Msa0839380:CDS 45.0%
TTCTTTGGCTATGGTGCTCA+AGG + chr5_4:14288842-14288861 Msa0839380:CDS 45.0%
! GTGCTGGTCTACCAATACAT+TGG - chr5_4:14288912-14288931 None:intergenic 45.0%
CATGTTTGACGGCTTTCCAA+AGG + chr5_4:14289048-14289067 Msa0839380:CDS 45.0%
CCTTCTGCTGCATATACCTT+TGG - chr5_4:14289067-14289086 None:intergenic 45.0%
! CCAAAGGTATATGCAGCAGA+AGG + chr5_4:14289064-14289083 Msa0839380:CDS 45.0%
CCAAAAGTGGAACAAGTCCA+CGG - chr5_4:14289205-14289224 None:intergenic 45.0%
!! CGTGGACTTGTTCCACTTTT+GGG + chr5_4:14289203-14289222 Msa0839380:CDS 45.0%
GGAATGTTTCGACCCAAAAG+TGG - chr5_4:14289218-14289237 None:intergenic 45.0%
TATCTGGCCTACTTAGTGTC+TGG + chr5_4:14289553-14289572 Msa0839380:intron 45.0%
CTAGGTGTGACATGTTTAGC+TGG + chr5_4:14290158-14290177 Msa0839380:CDS 45.0%
TGTTTAGCTGGTTATACCGC+TGG + chr5_4:14290170-14290189 Msa0839380:CDS 45.0%
!! AAAAGCCGAGAGTCTTGTTC+TGG + chr5_4:14290253-14290272 Msa0839380:CDS 45.0%
GGAGTGAAGATCGTAAGTTG+TGG + chr5_4:14290746-14290765 Msa0839380:intron 45.0%
ACAAATACGCAGAGATGTGC+AGG + chr5_4:14290972-14290991 Msa0839380:intron 45.0%
CAAATACGCAGAGATGTGCA+GGG + chr5_4:14290973-14290992 Msa0839380:intron 45.0%
AAATACGCAGAGATGTGCAG+GGG + chr5_4:14290974-14290993 Msa0839380:intron 45.0%
GTCTTAGAGTTGAGAGAGAG+AGG + chr5_4:14291003-14291022 Msa0839380:intron 45.0%
TTAGAGTTGAGAGAGAGAGG+TGG + chr5_4:14291006-14291025 Msa0839380:intron 45.0%
TAGAGTTGAGAGAGAGAGGT+GGG + chr5_4:14291007-14291026 Msa0839380:intron 45.0%
GAAAATGGAAGCCCTAACAC+GGG - chr5_4:14291057-14291076 None:intergenic 45.0%
GTAGTGCTTGTAAGTAGGAC+CGG - chr5_4:14291191-14291210 None:intergenic 45.0%
GTCTCCATTGCAGTTTGCAA+TGG + chr5_4:14291749-14291768 Msa0839380:intron 45.0%
ACGAAATAGTGCCCACTTGA+GGG - chr5_4:14292129-14292148 None:intergenic 45.0%
AACGAAATAGTGCCCACTTG+AGG - chr5_4:14292130-14292149 None:intergenic 45.0%
ATGCTGATACGAATCAAGGG+TGG + chr5_4:14292338-14292357 Msa0839380:intron 45.0%
CTGAGCTTGAATTTGCCAGT+AGG - chr5_4:14292488-14292507 None:intergenic 45.0%
TTCCTAGGTCTCCATCAGTT+AGG + chr5_4:14292699-14292718 Msa0839380:intron 45.0%
ATTGATGCCAGCCTAACTGA+TGG - chr5_4:14292713-14292732 None:intergenic 45.0%
GGACATATCACATCCAGTGT+GGG - chr5_4:14293043-14293062 None:intergenic 45.0%
TGGACATATCACATCCAGTG+TGG - chr5_4:14293044-14293063 None:intergenic 45.0%
ACACTGGATGTGATATGTCC+AGG + chr5_4:14293043-14293062 Msa0839380:intron 45.0%
TGGATGTGATATGTCCAGGA+GGG + chr5_4:14293047-14293066 Msa0839380:intron 45.0%
!! GGGAGGAGGGTGTTTATAAA+TGG + chr5_4:14293067-14293086 Msa0839380:intron 45.0%
AGAGACTATCCTAGATCCGT+TGG + chr5_4:14293162-14293181 Msa0839380:intron 45.0%
ACAATTGGTCCAACGGATCT+AGG - chr5_4:14293174-14293193 None:intergenic 45.0%
CCCGATTACAATTGGTCCAA+CGG - chr5_4:14293181-14293200 None:intergenic 45.0%
CCGTTGGACCAATTGTAATC+GGG + chr5_4:14293178-14293197 Msa0839380:intron 45.0%
CCAATTGTAATCGGGCTACT+CGG + chr5_4:14293186-14293205 Msa0839380:intron 45.0%
CAATTGTAATCGGGCTACTC+GGG + chr5_4:14293187-14293206 Msa0839380:intron 45.0%
GATGTCTATTCCTAGCCATG+AGG + chr5_4:14293220-14293239 Msa0839380:intron 45.0%
TGTCTATTCCTAGCCATGAG+GGG + chr5_4:14293222-14293241 Msa0839380:intron 45.0%
ACATATGTCACCTTTCAGGC+CGG + chr5_4:14293295-14293314 Msa0839380:intron 45.0%
!! ACCTTTCAGGCCGGTTTTAT+GGG + chr5_4:14293304-14293323 Msa0839380:intron 45.0%
GTAACCACCGTTTGTGCTTT+CGG + chr5_4:14293613-14293632 Msa0839380:intron 45.0%
! GAACTCTCCGAAAGCACAAA+CGG - chr5_4:14293623-14293642 None:intergenic 45.0%
! TGATGGACGTTGTCGTTATG+TGG + chr5_4:14293815-14293834 Msa0839380:intron 45.0%
! TCATGCTAACTTGTGCCCTT+GGG + chr5_4:14294214-14294233 Msa0839380:intron 45.0%
TTCCTTAACATGTGCCCCAA+GGG - chr5_4:14294232-14294251 None:intergenic 45.0%
! TCGCAACCGACTTAGAAGAA+GGG + chr5_4:14294447-14294466 Msa0839380:CDS 45.0%
GCAACAACATCCAACTCTAG+GGG + chr5_4:14294717-14294736 Msa0839380:three_prime_UTR 45.0%
CAAAGTTCTTCCCCTAGAGT+TGG - chr5_4:14294730-14294749 None:intergenic 45.0%
CGTGTCAGATAGGACAACAT+GGG - chr5_4:14294756-14294775 None:intergenic 45.0%
TCGTGTCAGATAGGACAACA+TGG - chr5_4:14294757-14294776 None:intergenic 45.0%
!! AAGAAATTAAATAAAAAAAA+TGG - chr5_4:14287872-14287891 None:intergenic 5.0%
!!! AAATTTCATTAAATTTTAAT+GGG - chr5_4:14290631-14290650 None:intergenic 5.0%
!!! TAAATTTCATTAAATTTTAA+TGG - chr5_4:14290632-14290651 None:intergenic 5.0%
CTGTGAGATTCCTCCTTCCA+TGG - chr5_4:14287722-14287741 None:intergenic 50.0%
CATGGAAGGAGGAATCTCAC+AGG + chr5_4:14287720-14287739 Msa0839380:CDS 50.0%
TATGCCCTTTGCACCATTGG+AGG + chr5_4:14287760-14287779 Msa0839380:CDS 50.0%
GCATTCCTCCAATGGTGCAA+AGG - chr5_4:14287768-14287787 None:intergenic 50.0%
! AGCACTGAGCATTCCTCCAA+TGG - chr5_4:14287776-14287795 None:intergenic 50.0%
ATTGGAGGAATGCTCAGTGC+TGG + chr5_4:14287775-14287794 Msa0839380:CDS 50.0%
ACTATCAGGGCCGTTTCTCT+AGG + chr5_4:14288577-14288596 Msa0839380:intron 50.0%
CCCTCCAGTTCCTAGAGAAA+CGG - chr5_4:14288590-14288609 None:intergenic 50.0%
! CCGTTTCTCTAGGAACTGGA+GGG + chr5_4:14288587-14288606 Msa0839380:intron 50.0%
CATCCTTTCCACAGGACAGA+AGG - chr5_4:14288812-14288831 None:intergenic 50.0%
CTTCTGTCCTGTGGAAAGGA+TGG + chr5_4:14288810-14288829 Msa0839380:CDS 50.0%
GGATGGACAGGCAAGTTCTT+TGG + chr5_4:14288827-14288846 Msa0839380:CDS 50.0%
TTTGGCTATGGTGCTCAAGG+AGG + chr5_4:14288845-14288864 Msa0839380:CDS 50.0%
TTGGCTATGGTGCTCAAGGA+GGG + chr5_4:14288846-14288865 Msa0839380:CDS 50.0%
ACTGCTTGCAGATTCTACCG+TGG + chr5_4:14289185-14289204 Msa0839380:intron 50.0%
!! CCGTGGACTTGTTCCACTTT+TGG + chr5_4:14289202-14289221 Msa0839380:CDS 50.0%
AAAGCTACCAACGGATCCAG+CGG - chr5_4:14290189-14290208 None:intergenic 50.0%
AGAGTTGAGAGAGAGAGGTG+GGG + chr5_4:14291008-14291027 Msa0839380:intron 50.0%
TAGCAACCAGGTTGCAGAAC+TGG + chr5_4:14291097-14291116 Msa0839380:intron 50.0%
CGGTAACATCAGACGACTCT+CGG - chr5_4:14291171-14291190 None:intergenic 50.0%
CGAGAGTCGTCTGATGTTAC+CGG + chr5_4:14291169-14291188 Msa0839380:intron 50.0%
TAGTGCCCACTTGAGGGTAA+AGG - chr5_4:14292123-14292142 None:intergenic 50.0%
AGCCTAACTGATGGAGACCT+AGG - chr5_4:14292704-14292723 None:intergenic 50.0%
TAGGTCTCCATCAGTTAGGC+TGG + chr5_4:14292703-14292722 Msa0839380:intron 50.0%
TATTGCTGAGAGTCCCACAC+TGG + chr5_4:14293027-14293046 Msa0839380:intron 50.0%
CTGGATGTGATATGTCCAGG+AGG + chr5_4:14293046-14293065 Msa0839380:intron 50.0%
ATGTGATATGTCCAGGAGGG+AGG + chr5_4:14293050-14293069 Msa0839380:intron 50.0%
CCGAGTAGCCCGATTACAAT+TGG - chr5_4:14293189-14293208 None:intergenic 50.0%
!! CACCTTTCAGGCCGGTTTTA+TGG + chr5_4:14293303-14293322 Msa0839380:intron 50.0%
!! CCTTTCAGGCCGGTTTTATG+GGG + chr5_4:14293305-14293324 Msa0839380:intron 50.0%
TAGGCTGTCTTGCAAGAGAG+AGG + chr5_4:14293562-14293581 Msa0839380:intron 50.0%
AGGCTGTCTTGCAAGAGAGA+GGG + chr5_4:14293563-14293582 Msa0839380:intron 50.0%
TTGCAAGAGAGAGGGAGAGA+GGG + chr5_4:14293571-14293590 Msa0839380:intron 50.0%
! GTCATGCTAACTTGTGCCCT+TGG + chr5_4:14294213-14294232 Msa0839380:intron 50.0%
! CATGCTAACTTGTGCCCTTG+GGG + chr5_4:14294215-14294234 Msa0839380:intron 50.0%
GTTCCTTAACATGTGCCCCA+AGG - chr5_4:14294233-14294252 None:intergenic 50.0%
AAACCTTGCAGGCCAACTAG+TGG + chr5_4:14294419-14294438 Msa0839380:intron 50.0%
GTTGCGACTTCACCACTAGT+TGG - chr5_4:14294434-14294453 None:intergenic 50.0%
! GTCGCAACCGACTTAGAAGA+AGG + chr5_4:14294446-14294465 Msa0839380:CDS 50.0%
! ACCGACTTAGAAGAAGGGTC+TGG + chr5_4:14294452-14294471 Msa0839380:CDS 50.0%
GCCAGACCCTTCTTCTAAGT+CGG - chr5_4:14294456-14294475 None:intergenic 50.0%
GTGGAGCACACCAAGAAGTA+TGG - chr5_4:14294927-14294946 None:intergenic 50.0%
GAAAGAGATCATGGCGGCCA+TGG + chr5_4:14287702-14287721 Msa0839380:exon 55.0%
!! TTGGGCTGCCCTTTTAGGTC+TGG + chr5_4:14288353-14288372 Msa0839380:intron 55.0%
!! TGGGCTGCCCTTTTAGGTCT+GGG + chr5_4:14288354-14288373 Msa0839380:intron 55.0%
! AGGGCCGTTTCTCTAGGAAC+TGG + chr5_4:14288583-14288602 Msa0839380:intron 55.0%
! GCCGTTTCTCTAGGAACTGG+AGG + chr5_4:14288586-14288605 Msa0839380:intron 55.0%
AACAAGGGCCTTCTGTCCTG+TGG + chr5_4:14288801-14288820 Msa0839380:CDS 55.0%
GTCCTGTGGAAAGGATGGAC+AGG + chr5_4:14288815-14288834 Msa0839380:CDS 55.0%
TGCCTGTCCATCCTTTCCAC+AGG - chr5_4:14288820-14288839 None:intergenic 55.0%
! GCTCAAGGAGGGTGCAGATT+TGG + chr5_4:14288857-14288876 Msa0839380:CDS 55.0%
GGTTATACCGCTGGATCCGT+TGG + chr5_4:14290179-14290198 Msa0839380:CDS 55.0%
TTGAGAGAGAGAGGTGGGGA+AGG + chr5_4:14291012-14291031 Msa0839380:intron 55.0%
TGAGAGAGAGAGGTGGGGAA+GGG + chr5_4:14291013-14291032 Msa0839380:intron 55.0%
ACGGAGAGATGCCCGTGTTA+GGG + chr5_4:14291043-14291062 Msa0839380:intron 55.0%
GGAAGCCCAATACGCCCTAA+TGG - chr5_4:14292683-14292702 None:intergenic 55.0%
TAGGGCGTATTGGGCTTCCT+AGG + chr5_4:14292684-14292703 Msa0839380:intron 55.0%
TGATATGTCCAGGAGGGAGG+AGG + chr5_4:14293053-14293072 Msa0839380:intron 55.0%
GATATGTCCAGGAGGGAGGA+GGG + chr5_4:14293054-14293073 Msa0839380:intron 55.0%
ATAAACACCCTCCTCCCTCC+TGG - chr5_4:14293064-14293083 None:intergenic 55.0%
AACACATGCCCCTCATGGCT+AGG - chr5_4:14293233-14293252 None:intergenic 55.0%
CTCTCAACACATGCCCCTCA+TGG - chr5_4:14293238-14293257 None:intergenic 55.0%
CCCCATAAAACCGGCCTGAA+AGG - chr5_4:14293308-14293327 None:intergenic 55.0%
CTTGCAAGAGAGAGGGAGAG+AGG + chr5_4:14293570-14293589 Msa0839380:intron 55.0%
TGCAAGAGAGAGGGAGAGAG+GGG + chr5_4:14293572-14293591 Msa0839380:intron 55.0%
! CTCTCCGAAAGCACAAACGG+TGG - chr5_4:14293620-14293639 None:intergenic 55.0%
TGTCCATGTAACAAGCGGGC+TGG + chr5_4:14294069-14294088 Msa0839380:intron 55.0%
TGCCCTTGGGGCACATGTTA+AGG + chr5_4:14294227-14294246 Msa0839380:intron 55.0%
! TCACCACTAGTTGGCCTGCA+AGG - chr5_4:14294425-14294444 None:intergenic 55.0%
GAGATCATGGCGGCCATGGA+AGG + chr5_4:14287706-14287725 Msa0839380:exon 60.0%
ATCATGGCGGCCATGGAAGG+AGG + chr5_4:14287709-14287728 Msa0839380:exon 60.0%
GGGCCTTCTGTCCTGTGGAA+AGG + chr5_4:14288806-14288825 Msa0839380:CDS 60.0%
! TATGCAGCAGAAGGCGCACG+AGG + chr5_4:14289073-14289092 Msa0839380:CDS 60.0%
! ATGCAGCAGAAGGCGCACGA+GGG + chr5_4:14289074-14289093 Msa0839380:CDS 60.0%
GGTGGGGAAGGGAAACTGCA+CGG + chr5_4:14291024-14291043 Msa0839380:intron 60.0%
CACGGAGAGATGCCCGTGTT+AGG + chr5_4:14291042-14291061 Msa0839380:intron 60.0%
GTGGGTCCAGTTCTGCAACC+TGG - chr5_4:14291106-14291125 None:intergenic 60.0%
AAGAGAGAGGGAGAGAGGGG+AGG + chr5_4:14293575-14293594 Msa0839380:intron 60.0%
AGAGAGAGGGAGAGAGGGGA+GGG + chr5_4:14293576-14293595 Msa0839380:intron 60.0%
AAGTTCATCCCAGCCCGCCT+CGG - chr5_4:14294132-14294151 None:intergenic 60.0%
AGAGGGAGAGAGGGGAGGGA+CGG + chr5_4:14293580-14293599 Msa0839380:intron 65.0%
! GGGCCAGCCCGCTTGTTACA+TGG - chr5_4:14294075-14294094 None:intergenic 65.0%
TGTGCTAGCCCACTGGACCG+AGG + chr5_4:14294112-14294131 Msa0839380:intron 65.0%
GCTAGCCCACTGGACCGAGG+CGG + chr5_4:14294115-14294134 Msa0839380:intron 70.0%
CTAGCCCACTGGACCGAGGC+GGG + chr5_4:14294116-14294135 Msa0839380:intron 70.0%
CCAGCCCGCCTCGGTCCAGT+GGG - chr5_4:14294123-14294142 None:intergenic 75.0%
! CCACTGGACCGAGGCGGGCT+GGG + chr5_4:14294121-14294140 Msa0839380:intron 75.0%
! CCCACTGGACCGAGGCGGGC+TGG + chr5_4:14294120-14294139 Msa0839380:intron 80.0%
! CCCAGCCCGCCTCGGTCCAG+TGG - chr5_4:14294124-14294143 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 14287440 14295034 14287440 ID=Msa0839380;Name=Msa0839380
chr5_4 mRNA 14287440 14295034 14287440 ID=Msa0839380-mRNA-1;Parent=Msa0839380;Name=Msa0839380-mRNA-1;_AED=0.10;_eAED=0.10;_QI=175|1|1|1|0.83|0.71|7|556|306
chr5_4 exon 14287440 14287498 14287440 ID=Msa0839380-mRNA-1:exon:6265;Parent=Msa0839380-mRNA-1
chr5_4 exon 14287596 14287849 14287596 ID=Msa0839380-mRNA-1:exon:6266;Parent=Msa0839380-mRNA-1
chr5_4 exon 14288746 14289095 14288746 ID=Msa0839380-mRNA-1:exon:6267;Parent=Msa0839380-mRNA-1
chr5_4 exon 14289196 14289239 14289196 ID=Msa0839380-mRNA-1:exon:6268;Parent=Msa0839380-mRNA-1
chr5_4 exon 14290060 14290274 14290060 ID=Msa0839380-mRNA-1:exon:6269;Parent=Msa0839380-mRNA-1
chr5_4 exon 14290364 14290488 14290364 ID=Msa0839380-mRNA-1:exon:6270;Parent=Msa0839380-mRNA-1
chr5_4 exon 14294430 14295034 14294430 ID=Msa0839380-mRNA-1:exon:6271;Parent=Msa0839380-mRNA-1
chr5_4 five_prime_UTR 14287440 14287498 14287440 ID=Msa0839380-mRNA-1:five_prime_utr;Parent=Msa0839380-mRNA-1
chr5_4 five_prime_UTR 14287596 14287711 14287596 ID=Msa0839380-mRNA-1:five_prime_utr;Parent=Msa0839380-mRNA-1
chr5_4 CDS 14287712 14287849 14287712 ID=Msa0839380-mRNA-1:cds;Parent=Msa0839380-mRNA-1
chr5_4 CDS 14288746 14289095 14288746 ID=Msa0839380-mRNA-1:cds;Parent=Msa0839380-mRNA-1
chr5_4 CDS 14289196 14289239 14289196 ID=Msa0839380-mRNA-1:cds;Parent=Msa0839380-mRNA-1
chr5_4 CDS 14290060 14290274 14290060 ID=Msa0839380-mRNA-1:cds;Parent=Msa0839380-mRNA-1
chr5_4 CDS 14290364 14290488 14290364 ID=Msa0839380-mRNA-1:cds;Parent=Msa0839380-mRNA-1
chr5_4 CDS 14294430 14294478 14294430 ID=Msa0839380-mRNA-1:cds;Parent=Msa0839380-mRNA-1
chr5_4 three_prime_UTR 14294479 14295034 14294479 ID=Msa0839380-mRNA-1:three_prime_utr;Parent=Msa0839380-mRNA-1
Gene Sequence

>Msa0839380

ATGGCGGCCATGGAAGGAGGAATCTCACAGGAATTAACGCCAAGGTATTATGCCCTTTGCACCATTGGAGGAATGCTCAGTGCTGGTACCACTCATCTTGCTACAACTCCTCTTGATGTTTTGAAAGTTAACATGCAGGTGCACCCAATTAAATATTACAGTATTTCATCGTGCTTTACTACGTTATTGAGGGAACAAGGGCCTTCTGTCCTGTGGAAAGGATGGACAGGCAAGTTCTTTGGCTATGGTGCTCAAGGAGGGTGCAGATTTGGTCTCTACGAATATTTTAAGGGAGTTTACTCCAATGTATTGGTAGACCAGCACAGAAGTCTTGTATATTTTCTTAGTAGTGCATCTGCTGAAGTATTTGCCAATTTAGCTCTATGTCCATTTGAAGCTGTTAAAGTCAGGGTTCAAGCACAACCTAGTTATGCTAAGGGCATGTTTGACGGCTTTCCAAAGGTATATGCAGCAGAAGGCGCACGAGGATTCTACCGTGGACTTGTTCCACTTTTGGGTCGAAACATTCCATTTTCCATGGTTATGTTCTCAACATTCGAGCATTCTGTTGATTTTTTGTATCGCAATGTTGTCAAAAGAAAAAAGGAGGAATGTTCAAAAGCTCAACAGCTAGGTGTGACATGTTTAGCTGGTTATACCGCTGGATCCGTTGGTAGCTTTGTTTCTAATCCTGCTGACAATATAGTAGCTTCTCTTTATAACAGAAAAGCCGAGAGTCTTGTTCTGGCTATCAGAAAAATTGGGCTAGCCAATTTATTTACCAGGAGTCTTCCTATTAGAATGTTGCTGGTTGGTCCTTCTATAACTTTGCAATGGTTTTTCTACGACACTATCAAAGTTTTAGGCGGACTGCCAACTAGTGGTGAAGTCGCAACCGACTTAGAAGAAGGGTCTGGCTAG
Protein sequence

>Msa0839380

MAAMEGGISQELTPRYYALCTIGGMLSAGTTHLATTPLDVLKVNMQVHPIKYYSISSCFTTLLREQGPSVLWKGWTGKFFGYGAQGGCRFGLYEYFKGVYSNVLVDQHRSLVYFLSSASAEVFANLALCPFEAVKVRVQAQPSYAKGMFDGFPKVYAAEGARGFYRGLVPLLGRNIPFSMVMFSTFEHSVDFLYRNVVKRKKEECSKAQQLGVTCLAGYTAGSVGSFVSNPADNIVASLYNRKAESLVLAIRKIGLANLFTRSLPIRMLLVGPSITLQWFFYDTIKVLGGLPTSGEVATDLEEGSG*