Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731680 | XP_003615062.1 | 92.798 | 361 | 20 | 2 | 1 | 361 | 1 | 355 | 0.0 | 648 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731680 | sp|Q9SIN1|TTL3_ARATH | 48.630 | 146 | 74 | 1 | 217 | 361 | 220 | 365 | 2.50e-37 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731680 | G7KAB8 | 92.798 | 361 | 20 | 2 | 1 | 361 | 1 | 355 | 0.0 | 648 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072180 | Msa0731680 | 0.805967 | 1.033815e-49 | -8.615850e-47 |
| Msa0657710 | Msa0731680 | 0.801212 | 1.001791e-48 | -8.615850e-47 |
| Msa0660650 | Msa0731680 | 0.806952 | 6.407480e-50 | -8.615850e-47 |
| Msa0682110 | Msa0731680 | 0.827723 | 1.336177e-54 | -8.615850e-47 |
| Msa0682160 | Msa0731680 | 0.818076 | 2.366578e-52 | -8.615850e-47 |
| Msa0709140 | Msa0731680 | 0.804772 | 1.839786e-49 | -8.615850e-47 |
| Msa0731590 | Msa0731680 | 0.863032 | 3.324105e-64 | -8.615850e-47 |
| Msa0731680 | Msa0771790 | 0.831765 | 1.386423e-55 | -8.615850e-47 |
| Msa0731680 | Msa0809930 | 0.801495 | 8.763223e-49 | -8.615850e-47 |
| Msa0731680 | Msa0812720 | 0.801813 | 7.541671e-49 | -8.615850e-47 |
| Msa0731680 | Msa0828960 | 0.802539 | 5.347626e-49 | -8.615850e-47 |
| Msa0731680 | Msa0848910 | 0.824566 | 7.530527e-54 | -8.615850e-47 |
| Msa0731680 | Msa0867660 | -0.804544 | 2.052896e-49 | -8.615850e-47 |
| Msa0731680 | Msa0873910 | 0.813209 | 2.874251e-51 | -8.615850e-47 |
| Msa0731680 | Msa0906660 | 0.813586 | 2.375159e-51 | -8.615850e-47 |
| Msa0731680 | Msa0908260 | -0.800349 | 1.502915e-48 | -8.615850e-47 |
| Msa0731680 | Msa0908270 | -0.819161 | 1.343340e-52 | -8.615850e-47 |
| Msa0731680 | Msa0908350 | -0.802727 | 4.891070e-49 | -8.615850e-47 |
| Msa0731680 | Msa0908470 | -0.802157 | 6.409572e-49 | -8.615850e-47 |
| Msa0731680 | Msa0908500 | -0.809810 | 1.574358e-50 | -8.615850e-47 |
| Msa0731680 | Msa0908690 | -0.802552 | 5.314410e-49 | -8.615850e-47 |
| Msa0731680 | Msa0911220 | -0.803888 | 2.811409e-49 | -8.615850e-47 |
| Msa0731680 | Msa0975960 | 0.801522 | 8.652069e-49 | -8.615850e-47 |
| Msa0731680 | Msa0983600 | -0.800359 | 1.495793e-48 | -8.615850e-47 |
| Msa0731680 | Msa0983610 | -0.801492 | 8.776906e-49 | -8.615850e-47 |
| Msa0731680 | Msa1007900 | 0.801660 | 8.106812e-49 | -8.615850e-47 |
| Msa0731680 | Msa1086770 | -0.800902 | 1.158988e-48 | -8.615850e-47 |
| Msa0731680 | Msa1087080 | -0.804937 | 1.699790e-49 | -8.615850e-47 |
| Msa0731680 | Msa1136760 | 0.807594 | 4.682823e-50 | -8.615850e-47 |
| Msa0731680 | Msa1202800 | 0.811422 | 7.058542e-51 | -8.615850e-47 |
| Msa0731680 | Msa1255210 | 0.804051 | 2.599950e-49 | -8.615850e-47 |
| Msa0731680 | Msa1295650 | 0.806361 | 8.539133e-50 | -8.615850e-47 |
| Msa0731680 | Msa1307530 | 0.802787 | 4.752995e-49 | -8.615850e-47 |
| Msa0731680 | Msa1354370 | -0.810138 | 1.338090e-50 | -8.615850e-47 |
| Msa0731680 | Msa1354520 | -0.800792 | 1.220605e-48 | -8.615850e-47 |
| Msa0731680 | Msa1354650 | -0.804152 | 2.478292e-49 | -8.615850e-47 |
| Msa0731680 | Msa1354660 | -0.801729 | 7.848317e-49 | -8.615850e-47 |
| Msa0731680 | Msa1354790 | -0.802509 | 5.424150e-49 | -8.615850e-47 |
| Msa0731680 | Msa1354960 | -0.803556 | 3.294554e-49 | -8.615850e-47 |
| Msa0731680 | Msa1365820 | 0.827834 | 1.256850e-54 | -8.615850e-47 |
| Msa0731680 | Msa1365980 | -0.802346 | 5.861257e-49 | -8.615850e-47 |
| Msa0731680 | Msa1366030 | -0.801830 | 7.481351e-49 | -8.615850e-47 |
| Msa0731680 | Msa1368390 | 0.813076 | 3.074190e-51 | -8.615850e-47 |
| Msa0731680 | Msa1385360 | -0.800570 | 1.354513e-48 | -8.615850e-47 |
| Msa0731680 | Msa1391130 | -0.801787 | 7.635193e-49 | -8.615850e-47 |
| Msa0731680 | Msa1391260 | -0.805523 | 1.281206e-49 | -8.615850e-47 |
| Msa0731680 | Msa1398140 | 0.803784 | 2.954959e-49 | -8.615850e-47 |
| Msa0731680 | Msa1457770 | 0.803886 | 2.814817e-49 | -8.615850e-47 |
| Msa0139680 | Msa0731680 | 0.805588 | 1.241833e-49 | -8.615850e-47 |
| Msa0386880 | Msa0731680 | 0.831839 | 1.329139e-55 | -8.615850e-47 |
| Msa0401860 | Msa0731680 | -0.802827 | 4.663904e-49 | -8.615850e-47 |
| Msa0269170 | Msa0731680 | -0.805284 | 1.438095e-49 | -8.615850e-47 |
| Msa0345050 | Msa0731680 | 0.813981 | 1.943548e-51 | -8.615850e-47 |
| Msa0483980 | Msa0731680 | -0.801196 | 1.009300e-48 | -8.615850e-47 |
| Msa0531050 | Msa0731680 | 0.801440 | 8.997571e-49 | -8.615850e-47 |
| Msa0546590 | Msa0731680 | 0.803472 | 3.429523e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731680 | MtrunA17_Chr5g0425741 | 92.798 | 361 | 20 | 2 | 1 | 361 | 1 | 355 | 0.0 | 648 |
| Msa0731680 | MtrunA17_Chr3g0115681 | 54.595 | 370 | 124 | 11 | 1 | 361 | 1 | 335 | 7.17e-109 | 333 |
| Msa0731680 | MtrunA17_Chr3g0124261 | 51.351 | 148 | 71 | 1 | 215 | 361 | 220 | 367 | 7.66e-44 | 160 |
| Msa0731680 | MtrunA17_Chr2g0316221 | 45.638 | 149 | 78 | 2 | 215 | 361 | 219 | 366 | 6.01e-39 | 147 |
| Msa0731680 | MtrunA17_Chr1g0160051 | 39.326 | 89 | 54 | 0 | 218 | 306 | 182 | 270 | 6.81e-15 | 75.9 |
| Msa0731680 | MtrunA17_Chr3g0097231 | 30.928 | 97 | 67 | 0 | 209 | 305 | 3 | 99 | 3.27e-11 | 64.7 |
| Msa0731680 | MtrunA17_Chr8g0393041 | 35.955 | 89 | 57 | 0 | 218 | 306 | 480 | 568 | 7.72e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731680 | AT5G65160.1 | 50.617 | 162 | 76 | 2 | 201 | 361 | 223 | 381 | 2.93e-45 | 164 |
| Msa0731680 | AT5G10090.1 | 46.067 | 178 | 92 | 2 | 201 | 377 | 224 | 398 | 1.32e-39 | 149 |
| Msa0731680 | AT1G78120.2 | 44.751 | 181 | 88 | 3 | 192 | 361 | 125 | 304 | 8.10e-39 | 145 |
| Msa0731680 | AT1G78120.1 | 44.751 | 181 | 88 | 3 | 192 | 361 | 125 | 304 | 1.90e-38 | 144 |
| Msa0731680 | AT2G42580.1 | 48.630 | 146 | 74 | 1 | 217 | 361 | 220 | 365 | 2.55e-38 | 146 |
| Msa0731680 | AT3G14950.1 | 46.575 | 146 | 77 | 1 | 217 | 361 | 258 | 403 | 8.45e-36 | 139 |
| Msa0731680 | AT3G58620.1 | 42.197 | 173 | 90 | 3 | 194 | 361 | 189 | 356 | 3.19e-35 | 137 |
| Msa0731680 | AT3G58620.1 | 27.891 | 147 | 100 | 2 | 195 | 338 | 430 | 573 | 8.40e-11 | 63.9 |
| Msa0731680 | AT3G58620.2 | 42.197 | 173 | 90 | 3 | 194 | 361 | 189 | 356 | 4.23e-35 | 136 |
| Msa0731680 | AT3G58620.2 | 28.082 | 146 | 99 | 2 | 196 | 338 | 431 | 573 | 8.87e-11 | 63.9 |
| Msa0731680 | AT1G53300.1 | 45.205 | 146 | 77 | 2 | 218 | 361 | 228 | 372 | 9.81e-33 | 130 |
| Msa0731680 | AT4G08320.1 | 37.079 | 89 | 56 | 0 | 218 | 306 | 176 | 264 | 6.55e-13 | 70.1 |
| Msa0731680 | AT4G08320.2 | 37.079 | 89 | 56 | 0 | 218 | 306 | 176 | 264 | 7.81e-13 | 69.7 |
| Msa0731680 | AT1G04190.1 | 34.074 | 135 | 76 | 3 | 220 | 354 | 18 | 139 | 1.09e-12 | 68.9 |
| Msa0731680 | AT2G41520.2 | 37.838 | 111 | 55 | 2 | 218 | 314 | 554 | 664 | 2.61e-11 | 65.9 |
| Msa0731680 | AT2G41520.1 | 37.838 | 111 | 55 | 2 | 218 | 314 | 554 | 664 | 2.90e-11 | 65.9 |
| Msa0731680 | AT2G41520.3 | 37.838 | 111 | 55 | 2 | 218 | 314 | 454 | 564 | 3.23e-11 | 65.5 |
| Msa0731680 | AT3G17970.1 | 37.079 | 89 | 56 | 0 | 218 | 306 | 475 | 563 | 4.06e-11 | 65.1 |
Find 55 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCAACACTCTTTCTTCT+TGG | 0.181231 | 5_1:+42878774 | None:intergenic |
| GTGTTAGTTCAACTCTTAAA+AGG | 0.198175 | 5_1:-42878977 | Msa0731680:CDS |
| ATTTCCCACCTTGTTGCTTT+TGG | 0.222662 | 5_1:+42879241 | None:intergenic |
| AAAGAAAGATCTTGAACTTA+TGG | 0.226514 | 5_1:-42876936 | Msa0731680:CDS |
| GTTTGGCAACAATATATTTC+AGG | 0.243557 | 5_1:-42878386 | Msa0731680:intron |
| TGACATCATCATCCGTATTA+TGG | 0.253217 | 5_1:+42878943 | None:intergenic |
| AACAAGGTGGGAAATGAATT+TGG | 0.258675 | 5_1:-42879233 | Msa0731680:CDS |
| CCCATTGATTTCAACACTTC+AGG | 0.263680 | 5_1:+42878606 | None:intergenic |
| TTGCTTCTGTGCATTTCTTC+AGG | 0.270434 | 5_1:+42877703 | None:intergenic |
| GGGAAATGAAGCATACAAAA+AGG | 0.283295 | 5_1:-42878586 | Msa0731680:CDS |
| AATTGCTATTGATTCAAATA+AGG | 0.311942 | 5_1:-42878526 | Msa0731680:CDS |
| TAATGGAAGAAAAGTGGTTA+TGG | 0.351291 | 5_1:-42878697 | Msa0731680:CDS |
| TGAATTTGGTTGTGGTTTCA+TGG | 0.358450 | 5_1:-42879219 | Msa0731680:CDS |
| TTCATTGAATCTAGTGTTGT+TGG | 0.378212 | 5_1:+42879055 | None:intergenic |
| AGTGCTGCTTTGATTGGATT+AGG | 0.390295 | 5_1:-42878483 | Msa0731680:CDS |
| TTTCAAGGGAGAAAAGTCTT+TGG | 0.402556 | 5_1:+42878827 | None:intergenic |
| AATGGAAGAAAAGTGGTTAT+GGG | 0.407604 | 5_1:-42878696 | Msa0731680:CDS |
| AATAAGAGTGCTGCTTTGAT+TGG | 0.422910 | 5_1:-42878489 | Msa0731680:CDS |
| CAAGTTTCCAGTGAGTTTCA+AGG | 0.440774 | 5_1:+42878812 | None:intergenic |
| TAACAGAGCTCACAATCGTT+TGG | 0.447020 | 5_1:-42878403 | Msa0731680:CDS |
| TTGAGTGTGAGGAATCTATT+CGG | 0.452182 | 5_1:-42878440 | Msa0731680:CDS |
| GGGAGAAAAGTCTTTGGTTA+CGG | 0.459219 | 5_1:+42878833 | None:intergenic |
| GTTTCCAAATAAAGAACAAA+AGG | 0.459946 | 5_1:-42879093 | Msa0731680:CDS |
| AAGCAAGGAAATTCAATGAA+TGG | 0.474345 | 5_1:-42877686 | Msa0731680:CDS |
| AAGTTTCCAGTGAGTTTCAA+GGG | 0.474677 | 5_1:+42878813 | None:intergenic |
| GAGTTTAACTCTAAATGCTT+AGG | 0.478109 | 5_1:+42878747 | None:intergenic |
| AGCTCGACATCATCATCCTC+TGG | 0.484914 | 5_1:-42878999 | Msa0731680:CDS |
| TGTTAGTTCAACTCTTAAAA+GGG | 0.486922 | 5_1:-42878976 | Msa0731680:CDS |
| TGAATGGAGTGTTGTACTAA+AGG | 0.491944 | 5_1:-42877670 | Msa0731680:CDS |
| TGGAGCTGAAGCGGCACCTA+AGG | 0.494708 | 5_1:+42877629 | None:intergenic |
| CAGATTAGGAGAAGTTGAAA+AGG | 0.497251 | 5_1:-42877799 | Msa0731680:CDS |
| ACCTGAAGTGTTGAAATCAA+TGG | 0.500536 | 5_1:-42878607 | Msa0731680:CDS |
| ACACAGTCTGCATTATCCTT+AGG | 0.501027 | 5_1:-42877645 | Msa0731680:CDS |
| GGTTGAACAAAACCATAATA+CGG | 0.506340 | 5_1:-42878955 | Msa0731680:CDS |
| CCTGAAGTGTTGAAATCAAT+GGG | 0.509444 | 5_1:-42878606 | Msa0731680:CDS |
| AGGTGCCGCTTCAGCTCCAC+AGG | 0.510296 | 5_1:-42877625 | Msa0731680:intron |
| CTGCTTTGATTGGATTAGGA+AGG | 0.522810 | 5_1:-42878479 | Msa0731680:CDS |
| TAATAATAATGGAAGAAAAG+TGG | 0.525995 | 5_1:-42878703 | Msa0731680:CDS |
| TGGTTATGGGGAATATTATG+AGG | 0.527211 | 5_1:-42878683 | Msa0731680:CDS |
| GTGGGAAATGAATTTGGTTG+TGG | 0.539824 | 5_1:-42879227 | Msa0731680:CDS |
| ACTCTTGGGTTTCAGTCCGA+TGG | 0.543128 | 5_1:-42876962 | Msa0731680:intron |
| AGGAGAAGTTGAAAAGGCAA+TGG | 0.551384 | 5_1:-42877793 | Msa0731680:CDS |
| AGTCAACATTTGACGTCGAT+CGG | 0.557068 | 5_1:+42877763 | None:intergenic |
| TTGTGAGCTCTGTTATAAGA+AGG | 0.559856 | 5_1:+42878411 | None:intergenic |
| GTGTGAGGAATCTATTCGGT+TGG | 0.560141 | 5_1:-42878436 | Msa0731680:CDS |
| AGAAGCAATTCTTGAGTGTG+AGG | 0.574330 | 5_1:-42878451 | Msa0731680:CDS |
| ATGGAAGAAAAGTGGTTATG+GGG | 0.585396 | 5_1:-42878695 | Msa0731680:CDS |
| ACTAATGAGTTTCTTAGCCT+AGG | 0.586693 | 5_1:+42879173 | None:intergenic |
| TGAAGAAATGCACAGAAGCA+AGG | 0.607934 | 5_1:-42877701 | Msa0731680:CDS |
| ACTAACCTGTGGAGCTGAAG+CGG | 0.636532 | 5_1:+42877620 | None:intergenic |
| AAGAGTTGAACTAACACCAG+AGG | 0.642924 | 5_1:+42878983 | None:intergenic |
| ACACTAGATTCAATGAAACT+CGG | 0.644942 | 5_1:-42879049 | Msa0731680:CDS |
| AAAACCAAAAGCAACAAGGT+GGG | 0.655464 | 5_1:-42879245 | Msa0731680:CDS |
| GAAAACCAAAAGCAACAAGG+TGG | 0.668719 | 5_1:-42879246 | Msa0731680:CDS |
| AATGAAAACCAAAAGCAACA+AGG | 0.673063 | 5_1:-42879249 | Msa0731680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGCAATAGTAATAATAA+TGG | - | chr5_1:42877453-42877472 | Msa0731680:intron | 15.0% |
| !! | TTATATAAAACAATTTGACT+CGG | + | chr5_1:42877948-42877967 | None:intergenic | 15.0% |
| !! | AAAAAAAACAAGCTATAATA+AGG | + | chr5_1:42878755-42878774 | None:intergenic | 15.0% |
| !!! | TTATTATAGCTTGTTTTTTT+TGG | - | chr5_1:42878754-42878773 | Msa0731680:CDS | 15.0% |
| !!! | TATTATAGCTTGTTTTTTTT+GGG | - | chr5_1:42878755-42878774 | Msa0731680:CDS | 15.0% |
| !!! | ATTGATTAGTTCTTTTTTTT+TGG | + | chr5_1:42878859-42878878 | None:intergenic | 15.0% |
| !! | AAAAAAAAAGAACTAATCAA+TGG | - | chr5_1:42878858-42878877 | Msa0731680:CDS | 15.0% |
| !!! | AAATTTCATGTTTTCTATAT+TGG | + | chr5_1:42878884-42878903 | None:intergenic | 15.0% |
| !! | AAATAGTAAAATAAACTCTT+GGG | - | chr5_1:42879191-42879210 | Msa0731680:CDS | 15.0% |
| !!! | TTTTGCAATAGTAATAATAA+TGG | - | chr5_1:42877453-42877472 | Msa0731680:intron | 15.0% |
| !! | TTATATAAAACAATTTGACT+CGG | + | chr5_1:42877948-42877967 | None:intergenic | 15.0% |
| !! | AAAAAAAACAAGCTATAATA+AGG | + | chr5_1:42878755-42878774 | None:intergenic | 15.0% |
| !!! | TTATTATAGCTTGTTTTTTT+TGG | - | chr5_1:42878754-42878773 | Msa0731680:CDS | 15.0% |
| !!! | TATTATAGCTTGTTTTTTTT+GGG | - | chr5_1:42878755-42878774 | Msa0731680:CDS | 15.0% |
| !!! | ATTGATTAGTTCTTTTTTTT+TGG | + | chr5_1:42878859-42878878 | None:intergenic | 15.0% |
| !! | AAAAAAAAAGAACTAATCAA+TGG | - | chr5_1:42878858-42878877 | Msa0731680:CDS | 15.0% |
| !!! | AAATTTCATGTTTTCTATAT+TGG | + | chr5_1:42878884-42878903 | None:intergenic | 15.0% |
| !! | AAATAGTAAAATAAACTCTT+GGG | - | chr5_1:42879191-42879210 | Msa0731680:CDS | 15.0% |
| !!! | TAATAATAATGGAAGAAAAG+TGG | - | chr5_1:42877464-42877483 | Msa0731680:intron | 20.0% |
| !!! | AATTGCTATTGATTCAAATA+AGG | - | chr5_1:42877641-42877660 | Msa0731680:CDS | 20.0% |
| !!! | GATGTTTTCATTAGTTATTT+TGG | - | chr5_1:42877975-42877994 | Msa0731680:intron | 20.0% |
| !!! | TGTTGATTTTATTTACAACA+AGG | - | chr5_1:42878700-42878719 | Msa0731680:CDS | 20.0% |
| !!! | ATTATAGCTTGTTTTTTTTG+GGG | - | chr5_1:42878756-42878775 | Msa0731680:CDS | 20.0% |
| !! | CAAATAGTAAAATAAACTCT+TGG | - | chr5_1:42879190-42879209 | Msa0731680:CDS | 20.0% |
| !!! | TAATAATAATGGAAGAAAAG+TGG | - | chr5_1:42877464-42877483 | Msa0731680:intron | 20.0% |
| !!! | AATTGCTATTGATTCAAATA+AGG | - | chr5_1:42877641-42877660 | Msa0731680:CDS | 20.0% |
| !!! | GATGTTTTCATTAGTTATTT+TGG | - | chr5_1:42877975-42877994 | Msa0731680:intron | 20.0% |
| !!! | TGTTGATTTTATTTACAACA+AGG | - | chr5_1:42878700-42878719 | Msa0731680:CDS | 20.0% |
| !!! | ATTATAGCTTGTTTTTTTTG+GGG | - | chr5_1:42878756-42878775 | Msa0731680:CDS | 20.0% |
| !! | CAAATAGTAAAATAAACTCT+TGG | - | chr5_1:42879190-42879209 | Msa0731680:CDS | 20.0% |
| !!! | TCAATGTTGTTAGTTTTCAT+TGG | + | chr5_1:42877030-42877049 | None:intergenic | 25.0% |
| ! | GTTTCCAAATAAAGAACAAA+AGG | - | chr5_1:42877074-42877093 | Msa0731680:intron | 25.0% |
| ! | TGTTAGTTCAACTCTTAAAA+GGG | - | chr5_1:42877191-42877210 | Msa0731680:intron | 25.0% |
| !! | TAATTCATTAAGGTTCTGAT+TGG | - | chr5_1:42877836-42877855 | Msa0731680:intron | 25.0% |
| !!! | TAGTTATTTTGGAAAGCTTA+TGG | - | chr5_1:42877986-42878005 | Msa0731680:intron | 25.0% |
| ! | TAAACATTTAGAAGAGCTTA+TGG | + | chr5_1:42878054-42878073 | None:intergenic | 25.0% |
| ! | AGTACCAAAGATTTAAATTG+AGG | - | chr5_1:42878116-42878135 | Msa0731680:intron | 25.0% |
| ! | ATGACCTCAATTTAAATCTT+TGG | + | chr5_1:42878123-42878142 | None:intergenic | 25.0% |
| ! | ATTTAAATTGAGGTCATGTT+GGG | - | chr5_1:42878126-42878145 | Msa0731680:intron | 25.0% |
| !! | TGCAAATTTTTATGCAGATT+AGG | - | chr5_1:42878354-42878373 | Msa0731680:intron | 25.0% |
| ! | CTATAATAAGGCAATTATGA+AGG | + | chr5_1:42878743-42878762 | None:intergenic | 25.0% |
| !!! | AAGTGTTAAGATGATTTGTT+TGG | + | chr5_1:42878809-42878828 | None:intergenic | 25.0% |
| ! | GTCAGTTTCACATAAAAAAA+TGG | + | chr5_1:42879049-42879068 | None:intergenic | 25.0% |
| !! | AAGATCTTTCTTTTTACCAT+CGG | + | chr5_1:42879224-42879243 | None:intergenic | 25.0% |
| ! | AAAGAAAGATCTTGAACTTA+TGG | - | chr5_1:42879231-42879250 | Msa0731680:CDS | 25.0% |
| !! | ATCTTGAACTTATGGATTTT+AGG | - | chr5_1:42879239-42879258 | Msa0731680:CDS | 25.0% |
| !!! | TCAATGTTGTTAGTTTTCAT+TGG | + | chr5_1:42877030-42877049 | None:intergenic | 25.0% |
| ! | GTTTCCAAATAAAGAACAAA+AGG | - | chr5_1:42877074-42877093 | Msa0731680:intron | 25.0% |
| ! | TGTTAGTTCAACTCTTAAAA+GGG | - | chr5_1:42877191-42877210 | Msa0731680:intron | 25.0% |
| !! | TAATTCATTAAGGTTCTGAT+TGG | - | chr5_1:42877836-42877855 | Msa0731680:intron | 25.0% |
| !!! | TAGTTATTTTGGAAAGCTTA+TGG | - | chr5_1:42877986-42878005 | Msa0731680:intron | 25.0% |
| ! | TAAACATTTAGAAGAGCTTA+TGG | + | chr5_1:42878054-42878073 | None:intergenic | 25.0% |
| ! | AGTACCAAAGATTTAAATTG+AGG | - | chr5_1:42878116-42878135 | Msa0731680:intron | 25.0% |
| ! | ATGACCTCAATTTAAATCTT+TGG | + | chr5_1:42878123-42878142 | None:intergenic | 25.0% |
| ! | ATTTAAATTGAGGTCATGTT+GGG | - | chr5_1:42878126-42878145 | Msa0731680:intron | 25.0% |
| !! | TGCAAATTTTTATGCAGATT+AGG | - | chr5_1:42878354-42878373 | Msa0731680:intron | 25.0% |
| ! | CTATAATAAGGCAATTATGA+AGG | + | chr5_1:42878743-42878762 | None:intergenic | 25.0% |
| !!! | AAGTGTTAAGATGATTTGTT+TGG | + | chr5_1:42878809-42878828 | None:intergenic | 25.0% |
| ! | GTCAGTTTCACATAAAAAAA+TGG | + | chr5_1:42879049-42879068 | None:intergenic | 25.0% |
| !! | AAGATCTTTCTTTTTACCAT+CGG | + | chr5_1:42879224-42879243 | None:intergenic | 25.0% |
| ! | AAAGAAAGATCTTGAACTTA+TGG | - | chr5_1:42879231-42879250 | Msa0731680:CDS | 25.0% |
| !! | ATCTTGAACTTATGGATTTT+AGG | - | chr5_1:42879239-42879258 | Msa0731680:CDS | 25.0% |
| AATGAAAACCAAAAGCAACA+AGG | - | chr5_1:42876918-42876937 | Msa0731680:CDS | 30.0% | |
| ! | TTTTCAATCTCAAAAGTCCT+AGG | - | chr5_1:42876977-42876996 | Msa0731680:intron | 30.0% |
| !!! | GTTGTTAGTTTTCATTGGTA+GGG | + | chr5_1:42877025-42877044 | None:intergenic | 30.0% |
| !!! | TGTTGTTAGTTTTCATTGGT+AGG | + | chr5_1:42877026-42877045 | None:intergenic | 30.0% |
| ! | GGAACCTTTTGTTCTTTATT+TGG | + | chr5_1:42877081-42877100 | None:intergenic | 30.0% |
| TTCATTGAATCTAGTGTTGT+TGG | + | chr5_1:42877115-42877134 | None:intergenic | 30.0% | |
| ACACTAGATTCAATGAAACT+CGG | - | chr5_1:42877118-42877137 | Msa0731680:intron | 30.0% | |
| GTGTTAGTTCAACTCTTAAA+AGG | - | chr5_1:42877190-42877209 | Msa0731680:intron | 30.0% | |
| GGTTGAACAAAACCATAATA+CGG | - | chr5_1:42877212-42877231 | Msa0731680:intron | 30.0% | |
| GAGTTTAACTCTAAATGCTT+AGG | + | chr5_1:42877423-42877442 | None:intergenic | 30.0% | |
| TAATGGAAGAAAAGTGGTTA+TGG | - | chr5_1:42877470-42877489 | Msa0731680:intron | 30.0% | |
| AATGGAAGAAAAGTGGTTAT+GGG | - | chr5_1:42877471-42877490 | Msa0731680:intron | 30.0% | |
| GGAAATGAAGCATACAAAAA+GGG | - | chr5_1:42877582-42877601 | Msa0731680:intron | 30.0% | |
| !! | CAAAAAGGGTAATTTTGAAG+AGG | - | chr5_1:42877596-42877615 | Msa0731680:intron | 30.0% |
| GTTTGGCAACAATATATTTC+AGG | - | chr5_1:42877781-42877800 | Msa0731680:CDS | 30.0% | |
| GGGCTTCATTTAATTCATTA+AGG | - | chr5_1:42877826-42877845 | Msa0731680:intron | 30.0% | |
| TTTGGAAAGCTTATGGAAAT+AGG | - | chr5_1:42877993-42878012 | Msa0731680:intron | 30.0% | |
| AATAGGCTGAAAACAACTTA+TGG | - | chr5_1:42878010-42878029 | Msa0731680:intron | 30.0% | |
| GATTTAAATTGAGGTCATGT+TGG | - | chr5_1:42878125-42878144 | Msa0731680:intron | 30.0% | |
| AAGCAAGGAAATTCAATGAA+TGG | - | chr5_1:42878481-42878500 | Msa0731680:CDS | 30.0% | |
| TATTTACAACAAGGTTGACT+AGG | - | chr5_1:42878709-42878728 | Msa0731680:CDS | 30.0% | |
| AATGAAAACCAAAAGCAACA+AGG | - | chr5_1:42876918-42876937 | Msa0731680:CDS | 30.0% | |
| ! | TTTTCAATCTCAAAAGTCCT+AGG | - | chr5_1:42876977-42876996 | Msa0731680:intron | 30.0% |
| !!! | GTTGTTAGTTTTCATTGGTA+GGG | + | chr5_1:42877025-42877044 | None:intergenic | 30.0% |
| !!! | TGTTGTTAGTTTTCATTGGT+AGG | + | chr5_1:42877026-42877045 | None:intergenic | 30.0% |
| ! | GGAACCTTTTGTTCTTTATT+TGG | + | chr5_1:42877081-42877100 | None:intergenic | 30.0% |
| TTCATTGAATCTAGTGTTGT+TGG | + | chr5_1:42877115-42877134 | None:intergenic | 30.0% | |
| ACACTAGATTCAATGAAACT+CGG | - | chr5_1:42877118-42877137 | Msa0731680:intron | 30.0% | |
| GTGTTAGTTCAACTCTTAAA+AGG | - | chr5_1:42877190-42877209 | Msa0731680:intron | 30.0% | |
| GGTTGAACAAAACCATAATA+CGG | - | chr5_1:42877212-42877231 | Msa0731680:intron | 30.0% | |
| GAGTTTAACTCTAAATGCTT+AGG | + | chr5_1:42877423-42877442 | None:intergenic | 30.0% | |
| TAATGGAAGAAAAGTGGTTA+TGG | - | chr5_1:42877470-42877489 | Msa0731680:intron | 30.0% | |
| AATGGAAGAAAAGTGGTTAT+GGG | - | chr5_1:42877471-42877490 | Msa0731680:intron | 30.0% | |
| GGAAATGAAGCATACAAAAA+GGG | - | chr5_1:42877582-42877601 | Msa0731680:intron | 30.0% | |
| !! | CAAAAAGGGTAATTTTGAAG+AGG | - | chr5_1:42877596-42877615 | Msa0731680:intron | 30.0% |
| GTTTGGCAACAATATATTTC+AGG | - | chr5_1:42877781-42877800 | Msa0731680:CDS | 30.0% | |
| GGGCTTCATTTAATTCATTA+AGG | - | chr5_1:42877826-42877845 | Msa0731680:intron | 30.0% | |
| TTTGGAAAGCTTATGGAAAT+AGG | - | chr5_1:42877993-42878012 | Msa0731680:intron | 30.0% | |
| AATAGGCTGAAAACAACTTA+TGG | - | chr5_1:42878010-42878029 | Msa0731680:intron | 30.0% | |
| GATTTAAATTGAGGTCATGT+TGG | - | chr5_1:42878125-42878144 | Msa0731680:intron | 30.0% | |
| AAGCAAGGAAATTCAATGAA+TGG | - | chr5_1:42878481-42878500 | Msa0731680:CDS | 30.0% | |
| TATTTACAACAAGGTTGACT+AGG | - | chr5_1:42878709-42878728 | Msa0731680:CDS | 30.0% | |
| AAAACCAAAAGCAACAAGGT+GGG | - | chr5_1:42876922-42876941 | Msa0731680:CDS | 35.0% | |
| AACAAGGTGGGAAATGAATT+TGG | - | chr5_1:42876934-42876953 | Msa0731680:CDS | 35.0% | |
| TGAATTTGGTTGTGGTTTCA+TGG | - | chr5_1:42876948-42876967 | Msa0731680:CDS | 35.0% | |
| ACTAATGAGTTTCTTAGCCT+AGG | + | chr5_1:42876997-42877016 | None:intergenic | 35.0% | |
| !!! | GTGTTGTTGGAGATTTTTTG+TGG | + | chr5_1:42877102-42877121 | None:intergenic | 35.0% |
| TGACATCATCATCCGTATTA+TGG | + | chr5_1:42877227-42877246 | None:intergenic | 35.0% | |
| TTTCAAGGGAGAAAAGTCTT+TGG | + | chr5_1:42877343-42877362 | None:intergenic | 35.0% | |
| AAGTTTCCAGTGAGTTTCAA+GGG | + | chr5_1:42877357-42877376 | None:intergenic | 35.0% | |
| ATGGAAGAAAAGTGGTTATG+GGG | - | chr5_1:42877472-42877491 | Msa0731680:intron | 35.0% | |
| TGGTTATGGGGAATATTATG+AGG | - | chr5_1:42877484-42877503 | Msa0731680:intron | 35.0% | |
| !! | ACCTGAAGTGTTGAAATCAA+TGG | - | chr5_1:42877560-42877579 | Msa0731680:intron | 35.0% |
| !! | CCTGAAGTGTTGAAATCAAT+GGG | - | chr5_1:42877561-42877580 | Msa0731680:intron | 35.0% |
| GGGAAATGAAGCATACAAAA+AGG | - | chr5_1:42877581-42877600 | Msa0731680:intron | 35.0% | |
| !! | GGTAATTTTGAAGAGGCTTT+GGG | - | chr5_1:42877603-42877622 | Msa0731680:intron | 35.0% |
| !! | AATAAGAGTGCTGCTTTGAT+TGG | - | chr5_1:42877678-42877697 | Msa0731680:CDS | 35.0% |
| TTGAGTGTGAGGAATCTATT+CGG | - | chr5_1:42877727-42877746 | Msa0731680:CDS | 35.0% | |
| TTGTGAGCTCTGTTATAAGA+AGG | + | chr5_1:42877759-42877778 | None:intergenic | 35.0% | |
| CAGATTAGGAGAAGTTGAAA+AGG | - | chr5_1:42878368-42878387 | Msa0731680:intron | 35.0% | |
| !! | TGAATGGAGTGTTGTACTAA+AGG | - | chr5_1:42878497-42878516 | Msa0731680:CDS | 35.0% |
| !!! | TAGCTTGTTTTTTTTGGGGA+AGG | - | chr5_1:42878760-42878779 | Msa0731680:CDS | 35.0% |
| AAAACCAAAAGCAACAAGGT+GGG | - | chr5_1:42876922-42876941 | Msa0731680:CDS | 35.0% | |
| AACAAGGTGGGAAATGAATT+TGG | - | chr5_1:42876934-42876953 | Msa0731680:CDS | 35.0% | |
| TGAATTTGGTTGTGGTTTCA+TGG | - | chr5_1:42876948-42876967 | Msa0731680:CDS | 35.0% | |
| ACTAATGAGTTTCTTAGCCT+AGG | + | chr5_1:42876997-42877016 | None:intergenic | 35.0% | |
| !!! | GTGTTGTTGGAGATTTTTTG+TGG | + | chr5_1:42877102-42877121 | None:intergenic | 35.0% |
| TGACATCATCATCCGTATTA+TGG | + | chr5_1:42877227-42877246 | None:intergenic | 35.0% | |
| TTTCAAGGGAGAAAAGTCTT+TGG | + | chr5_1:42877343-42877362 | None:intergenic | 35.0% | |
| AAGTTTCCAGTGAGTTTCAA+GGG | + | chr5_1:42877357-42877376 | None:intergenic | 35.0% | |
| ATGGAAGAAAAGTGGTTATG+GGG | - | chr5_1:42877472-42877491 | Msa0731680:intron | 35.0% | |
| TGGTTATGGGGAATATTATG+AGG | - | chr5_1:42877484-42877503 | Msa0731680:intron | 35.0% | |
| !! | ACCTGAAGTGTTGAAATCAA+TGG | - | chr5_1:42877560-42877579 | Msa0731680:intron | 35.0% |
| !! | CCTGAAGTGTTGAAATCAAT+GGG | - | chr5_1:42877561-42877580 | Msa0731680:intron | 35.0% |
| GGGAAATGAAGCATACAAAA+AGG | - | chr5_1:42877581-42877600 | Msa0731680:intron | 35.0% | |
| !! | GGTAATTTTGAAGAGGCTTT+GGG | - | chr5_1:42877603-42877622 | Msa0731680:intron | 35.0% |
| !! | AATAAGAGTGCTGCTTTGAT+TGG | - | chr5_1:42877678-42877697 | Msa0731680:CDS | 35.0% |
| TTGAGTGTGAGGAATCTATT+CGG | - | chr5_1:42877727-42877746 | Msa0731680:CDS | 35.0% | |
| TTGTGAGCTCTGTTATAAGA+AGG | + | chr5_1:42877759-42877778 | None:intergenic | 35.0% | |
| CAGATTAGGAGAAGTTGAAA+AGG | - | chr5_1:42878368-42878387 | Msa0731680:intron | 35.0% | |
| !! | TGAATGGAGTGTTGTACTAA+AGG | - | chr5_1:42878497-42878516 | Msa0731680:CDS | 35.0% |
| !!! | TAGCTTGTTTTTTTTGGGGA+AGG | - | chr5_1:42878760-42878779 | Msa0731680:CDS | 35.0% |
| GAAAACCAAAAGCAACAAGG+TGG | - | chr5_1:42876921-42876940 | Msa0731680:CDS | 40.0% | |
| !!! | ATTTCCCACCTTGTTGCTTT+TGG | + | chr5_1:42876929-42876948 | None:intergenic | 40.0% |
| GTGGGAAATGAATTTGGTTG+TGG | - | chr5_1:42876940-42876959 | Msa0731680:CDS | 40.0% | |
| AAGAGTTGAACTAACACCAG+AGG | + | chr5_1:42877187-42877206 | None:intergenic | 40.0% | |
| GGGAGAAAAGTCTTTGGTTA+CGG | + | chr5_1:42877337-42877356 | None:intergenic | 40.0% | |
| ! | TTTTCTCCCTTGAAACTCAC+TGG | - | chr5_1:42877348-42877367 | Msa0731680:intron | 40.0% |
| CAAGTTTCCAGTGAGTTTCA+AGG | + | chr5_1:42877358-42877377 | None:intergenic | 40.0% | |
| CACTCAACACTCTTTCTTCT+TGG | + | chr5_1:42877396-42877415 | None:intergenic | 40.0% | |
| !! | CCCATTGATTTCAACACTTC+AGG | + | chr5_1:42877564-42877583 | None:intergenic | 40.0% |
| !! | GGGTAATTTTGAAGAGGCTT+TGG | - | chr5_1:42877602-42877621 | Msa0731680:intron | 40.0% |
| !! | AGTGCTGCTTTGATTGGATT+AGG | - | chr5_1:42877684-42877703 | Msa0731680:CDS | 40.0% |
| ! | CTGCTTTGATTGGATTAGGA+AGG | - | chr5_1:42877688-42877707 | Msa0731680:CDS | 40.0% |
| AGAAGCAATTCTTGAGTGTG+AGG | - | chr5_1:42877716-42877735 | Msa0731680:CDS | 40.0% | |
| TAACAGAGCTCACAATCGTT+TGG | - | chr5_1:42877764-42877783 | Msa0731680:CDS | 40.0% | |
| ACACAGTCACAATAATCACG+TGG | - | chr5_1:42877805-42877824 | Msa0731680:intron | 40.0% | |
| CACAGTCACAATAATCACGT+GGG | - | chr5_1:42877806-42877825 | Msa0731680:intron | 40.0% | |
| ! | GTACTTGAGCTTGTTTGGAT+TGG | + | chr5_1:42878101-42878120 | None:intergenic | 40.0% |
| ! | CTTTGGTACTTGAGCTTGTT+TGG | + | chr5_1:42878106-42878125 | None:intergenic | 40.0% |
| AGGAGAAGTTGAAAAGGCAA+TGG | - | chr5_1:42878374-42878393 | Msa0731680:intron | 40.0% | |
| AGTCAACATTTGACGTCGAT+CGG | + | chr5_1:42878407-42878426 | None:intergenic | 40.0% | |
| !! | TGTACTTGCTTTTCAAGCTC+AGG | - | chr5_1:42878428-42878447 | Msa0731680:CDS | 40.0% |
| TTGCTTCTGTGCATTTCTTC+AGG | + | chr5_1:42878467-42878486 | None:intergenic | 40.0% | |
| TGAAGAAATGCACAGAAGCA+AGG | - | chr5_1:42878466-42878485 | Msa0731680:CDS | 40.0% | |
| ACACAGTCTGCATTATCCTT+AGG | - | chr5_1:42878522-42878541 | Msa0731680:CDS | 40.0% | |
| GAAAACCAAAAGCAACAAGG+TGG | - | chr5_1:42876921-42876940 | Msa0731680:CDS | 40.0% | |
| !!! | ATTTCCCACCTTGTTGCTTT+TGG | + | chr5_1:42876929-42876948 | None:intergenic | 40.0% |
| GTGGGAAATGAATTTGGTTG+TGG | - | chr5_1:42876940-42876959 | Msa0731680:CDS | 40.0% | |
| AAGAGTTGAACTAACACCAG+AGG | + | chr5_1:42877187-42877206 | None:intergenic | 40.0% | |
| GGGAGAAAAGTCTTTGGTTA+CGG | + | chr5_1:42877337-42877356 | None:intergenic | 40.0% | |
| ! | TTTTCTCCCTTGAAACTCAC+TGG | - | chr5_1:42877348-42877367 | Msa0731680:intron | 40.0% |
| CAAGTTTCCAGTGAGTTTCA+AGG | + | chr5_1:42877358-42877377 | None:intergenic | 40.0% | |
| CACTCAACACTCTTTCTTCT+TGG | + | chr5_1:42877396-42877415 | None:intergenic | 40.0% | |
| !! | CCCATTGATTTCAACACTTC+AGG | + | chr5_1:42877564-42877583 | None:intergenic | 40.0% |
| !! | GGGTAATTTTGAAGAGGCTT+TGG | - | chr5_1:42877602-42877621 | Msa0731680:intron | 40.0% |
| !! | AGTGCTGCTTTGATTGGATT+AGG | - | chr5_1:42877684-42877703 | Msa0731680:CDS | 40.0% |
| ! | CTGCTTTGATTGGATTAGGA+AGG | - | chr5_1:42877688-42877707 | Msa0731680:CDS | 40.0% |
| AGAAGCAATTCTTGAGTGTG+AGG | - | chr5_1:42877716-42877735 | Msa0731680:CDS | 40.0% | |
| TAACAGAGCTCACAATCGTT+TGG | - | chr5_1:42877764-42877783 | Msa0731680:CDS | 40.0% | |
| ACACAGTCACAATAATCACG+TGG | - | chr5_1:42877805-42877824 | Msa0731680:intron | 40.0% | |
| CACAGTCACAATAATCACGT+GGG | - | chr5_1:42877806-42877825 | Msa0731680:intron | 40.0% | |
| ! | GTACTTGAGCTTGTTTGGAT+TGG | + | chr5_1:42878101-42878120 | None:intergenic | 40.0% |
| ! | CTTTGGTACTTGAGCTTGTT+TGG | + | chr5_1:42878106-42878125 | None:intergenic | 40.0% |
| AGGAGAAGTTGAAAAGGCAA+TGG | - | chr5_1:42878374-42878393 | Msa0731680:intron | 40.0% | |
| AGTCAACATTTGACGTCGAT+CGG | + | chr5_1:42878407-42878426 | None:intergenic | 40.0% | |
| !! | TGTACTTGCTTTTCAAGCTC+AGG | - | chr5_1:42878428-42878447 | Msa0731680:CDS | 40.0% |
| TTGCTTCTGTGCATTTCTTC+AGG | + | chr5_1:42878467-42878486 | None:intergenic | 40.0% | |
| TGAAGAAATGCACAGAAGCA+AGG | - | chr5_1:42878466-42878485 | Msa0731680:CDS | 40.0% | |
| ACACAGTCTGCATTATCCTT+AGG | - | chr5_1:42878522-42878541 | Msa0731680:CDS | 40.0% | |
| GTGTGAGGAATCTATTCGGT+TGG | - | chr5_1:42877731-42877750 | Msa0731680:CDS | 45.0% | |
| !! | CGCTCATGCTTCTAGTTCAA+TGG | + | chr5_1:42878944-42878963 | None:intergenic | 45.0% |
| AGCATGAGCGAGTCATTTGA+TGG | - | chr5_1:42878954-42878973 | Msa0731680:CDS | 45.0% | |
| GTGTGAGGAATCTATTCGGT+TGG | - | chr5_1:42877731-42877750 | Msa0731680:CDS | 45.0% | |
| !! | CGCTCATGCTTCTAGTTCAA+TGG | + | chr5_1:42878944-42878963 | None:intergenic | 45.0% |
| AGCATGAGCGAGTCATTTGA+TGG | - | chr5_1:42878954-42878973 | Msa0731680:CDS | 45.0% | |
| !!! | CATTTTTTAAAATATATTAA+AGG | - | chr5_1:42878251-42878270 | Msa0731680:intron | 5.0% |
| !!! | CATTTTTTAAAATATATTAA+AGG | - | chr5_1:42878251-42878270 | Msa0731680:intron | 5.0% |
| AGCTCGACATCATCATCCTC+TGG | - | chr5_1:42877168-42877187 | Msa0731680:intron | 50.0% | |
| GCACATTTGAGCGCGAATTG+AGG | + | chr5_1:42878154-42878173 | None:intergenic | 50.0% | |
| ATGTCTCATAACCGCCAGTG+AGG | + | chr5_1:42878186-42878205 | None:intergenic | 50.0% | |
| ACTAACCTGTGGAGCTGAAG+CGG | + | chr5_1:42878550-42878569 | None:intergenic | 50.0% | |
| TTGCGCAAGGAACTAACCTG+TGG | + | chr5_1:42878561-42878580 | None:intergenic | 50.0% | |
| ACTCTTGGGTTTCAGTCCGA+TGG | - | chr5_1:42879205-42879224 | Msa0731680:CDS | 50.0% | |
| AGCTCGACATCATCATCCTC+TGG | - | chr5_1:42877168-42877187 | Msa0731680:intron | 50.0% | |
| GCACATTTGAGCGCGAATTG+AGG | + | chr5_1:42878154-42878173 | None:intergenic | 50.0% | |
| ATGTCTCATAACCGCCAGTG+AGG | + | chr5_1:42878186-42878205 | None:intergenic | 50.0% | |
| ACTAACCTGTGGAGCTGAAG+CGG | + | chr5_1:42878550-42878569 | None:intergenic | 50.0% | |
| TTGCGCAAGGAACTAACCTG+TGG | + | chr5_1:42878561-42878580 | None:intergenic | 50.0% | |
| ACTCTTGGGTTTCAGTCCGA+TGG | - | chr5_1:42879205-42879224 | Msa0731680:CDS | 50.0% | |
| TGTGCCCAATGCGACCTCAC+TGG | - | chr5_1:42878169-42878188 | Msa0731680:intron | 60.0% | |
| ACCGCCAGTGAGGTCGCATT+GGG | + | chr5_1:42878176-42878195 | None:intergenic | 60.0% | |
| AACCGCCAGTGAGGTCGCAT+TGG | + | chr5_1:42878177-42878196 | None:intergenic | 60.0% | |
| TGGAGCTGAAGCGGCACCTA+AGG | + | chr5_1:42878541-42878560 | None:intergenic | 60.0% | |
| TGTGCCCAATGCGACCTCAC+TGG | - | chr5_1:42878169-42878188 | Msa0731680:intron | 60.0% | |
| ACCGCCAGTGAGGTCGCATT+GGG | + | chr5_1:42878176-42878195 | None:intergenic | 60.0% | |
| AACCGCCAGTGAGGTCGCAT+TGG | + | chr5_1:42878177-42878196 | None:intergenic | 60.0% | |
| TGGAGCTGAAGCGGCACCTA+AGG | + | chr5_1:42878541-42878560 | None:intergenic | 60.0% | |
| GCCCAATGCGACCTCACTGG+CGG | - | chr5_1:42878172-42878191 | Msa0731680:intron | 65.0% | |
| !! | AGGTGCCGCTTCAGCTCCAC+AGG | - | chr5_1:42878542-42878561 | Msa0731680:CDS | 65.0% |
| GCCCAATGCGACCTCACTGG+CGG | - | chr5_1:42878172-42878191 | Msa0731680:intron | 65.0% | |
| !! | AGGTGCCGCTTCAGCTCCAC+AGG | - | chr5_1:42878542-42878561 | Msa0731680:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 42876913 | 42879276 | 42876913 | ID=Msa0731680;Name=Msa0731680 |
| chr5_1 | mRNA | 42876913 | 42879276 | 42876913 | ID=Msa0731680-mRNA-1;Parent=Msa0731680;Name=Msa0731680-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.5|0|0.66|1|1|3|0|379 |
| chr5_1 | exon | 42878387 | 42879276 | 42878387 | ID=Msa0731680-mRNA-1:exon:12309;Parent=Msa0731680-mRNA-1 |
| chr5_1 | exon | 42877626 | 42877818 | 42877626 | ID=Msa0731680-mRNA-1:exon:12308;Parent=Msa0731680-mRNA-1 |
| chr5_1 | exon | 42876913 | 42876969 | 42876913 | ID=Msa0731680-mRNA-1:exon:12307;Parent=Msa0731680-mRNA-1 |
| chr5_1 | CDS | 42878387 | 42879276 | 42878387 | ID=Msa0731680-mRNA-1:cds;Parent=Msa0731680-mRNA-1 |
| chr5_1 | CDS | 42877626 | 42877818 | 42877626 | ID=Msa0731680-mRNA-1:cds;Parent=Msa0731680-mRNA-1 |
| chr5_1 | CDS | 42876913 | 42876969 | 42876913 | ID=Msa0731680-mRNA-1:cds;Parent=Msa0731680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
