AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1385360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1385360 MtrunA17_Chr4g0016151 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1385360 MtrunA17_CPg0492351 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1385360 MtrunA17_Chr7g0229411 98.780 82 1 0 199 280 1 82 3.39e-54 170
Msa1385360 MtrunA17_Chr4g0000631 98.780 82 1 0 199 280 1 82 3.50e-54 170
Msa1385360 MtrunA17_Chr5g0435911 97.561 82 2 0 199 280 1 82 1.38e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 122 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCATGGTTCGATATTC+TGG 0.185586 tig0020748:+3125 None:intergenic
TGCACGCCTCCGTTACCTTT+TGG 0.196515 tig0020748:-2184 Msa1385360:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 tig0020748:-2479 Msa1385360:CDS
TCATGCCTTTACTTCGTTCA+TGG 0.272664 tig0020748:+3112 None:intergenic
GGCTGTGATACCGGAGGCTC+TGG 0.279951 tig0020748:-2725 Msa1385360:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 tig0020748:+2149 None:intergenic
GCACGAAAGGCGTAACGATC+TGG 0.311741 tig0020748:+1885 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 tig0020748:-2530 Msa1385360:CDS
CAGAGAACCCATCGCTGTTT+CGG 0.333458 tig0020748:-2746 Msa1385360:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 tig0020748:+2213 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 tig0020748:-2385 Msa1385360:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 tig0020748:-1760 Msa1385360:CDS
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 tig0020748:-1800 Msa1385360:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 tig0020748:+1717 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 tig0020748:+2353 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 tig0020748:+2480 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 tig0020748:-2386 Msa1385360:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 tig0020748:-2478 Msa1385360:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 tig0020748:-1807 Msa1385360:CDS
CGCTGTTTCGGCTGTGATAC+CGG 0.403155 tig0020748:-2734 Msa1385360:CDS
AATAGGAGAGCACTCATCTT+GGG 0.408942 tig0020748:-2693 Msa1385360:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 tig0020748:+1751 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 tig0020748:-2237 Msa1385360:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 tig0020748:+2393 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 tig0020748:-1754 Msa1385360:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 tig0020748:+2448 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 tig0020748:-1815 Msa1385360:CDS
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 tig0020748:+1741 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 tig0020748:-1749 Msa1385360:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 tig0020748:-1814 Msa1385360:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 tig0020748:-2955 Msa1385360:CDS
CCACCAAGTTCGGGATGGAT+TGG 0.447763 tig0020748:-3172 None:intergenic
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 tig0020748:+2447 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 tig0020748:-1784 Msa1385360:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 tig0020748:+2517 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 tig0020748:+2133 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 tig0020748:+2506 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 tig0020748:+1796 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 tig0020748:-2236 Msa1385360:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 tig0020748:-2128 Msa1385360:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 tig0020748:+2384 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 tig0020748:-1714 Msa1385360:CDS
GTTCGATATTCTGGTGTCCT+AGG 0.478291 tig0020748:+3134 None:intergenic
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 tig0020748:+2715 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 tig0020748:-2221 Msa1385360:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 tig0020748:+1758 None:intergenic
GAATAGGAGAGCACTCATCT+TGG 0.487596 tig0020748:-2694 Msa1385360:CDS
ACAAGGAATTTCGCTACCTT+AGG 0.488888 tig0020748:-1845 Msa1385360:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 tig0020748:-2710 Msa1385360:CDS
CACGAAAGGCGTAACGATCT+GGG 0.491297 tig0020748:+1886 None:intergenic
GAAGTTGGTGACCTGATGAC+AGG 0.495416 tig0020748:+1773 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 tig0020748:+1849 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 tig0020748:-2930 Msa1385360:intron
TTCCTTAACCTTCCGGCACT+GGG 0.504342 tig0020748:-1753 Msa1385360:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 tig0020748:+1803 None:intergenic
CACTGTCTCGGAGAGAGGCT+CGG 0.506062 tig0020748:+1909 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 tig0020748:+2422 None:intergenic
GCTGTGATACCGGAGGCTCT+GGG 0.508804 tig0020748:-2724 Msa1385360:CDS
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 tig0020748:+2150 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 tig0020748:+2236 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 tig0020748:+1848 None:intergenic
TAACGATCTGGGCACTGTCT+CGG 0.513539 tig0020748:+1897 None:intergenic
ATGACCTGATCAATTCGATC+AGG 0.514268 tig0020748:+2926 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.516913 tig0020748:-1882 Msa1385360:CDS
TGACCTGATGACAGGGAAGC+CGG 0.518242 tig0020748:+1781 None:intergenic
CCTTAGGACCGTTATAGTTA+CGG 0.519214 tig0020748:-1829 Msa1385360:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 tig0020748:+2197 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 tig0020748:+2198 None:intergenic
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 tig0020748:-2384 Msa1385360:CDS
CCTTGGTCTGTACTGGCACA+AGG 0.538614 tig0020748:-2121 Msa1385360:intron
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 tig0020748:+2481 None:intergenic
CTGGGCACTGTCTCGGAGAG+AGG 0.542198 tig0020748:+1904 None:intergenic
AAGGTTTGGCACCTCGATGT+CGG 0.545826 tig0020748:+2407 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 tig0020748:-2459 Msa1385360:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 tig0020748:+2383 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 tig0020748:+1718 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 tig0020748:-2214 Msa1385360:CDS
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 tig0020748:+2442 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 tig0020748:+1806 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.565799 tig0020748:-1883 Msa1385360:CDS
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 tig0020748:-2716 Msa1385360:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 tig0020748:+1745 None:intergenic
TATCACAGCCGAAACAGCGA+TGG 0.574058 tig0020748:+2738 None:intergenic
CCGTAACTATAACGGTCCTA+AGG 0.574485 tig0020748:+1829 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 tig0020748:-2440 Msa1385360:CDS
TAAGTTCCGACCCGCACGAA+AGG 0.581321 tig0020748:+1872 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 tig0020748:-2138 Msa1385360:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 tig0020748:+2188 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 tig0020748:+2237 None:intergenic
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 tig0020748:+2206 None:intergenic
CTGTGATACCGGAGGCTCTG+GGG 0.598997 tig0020748:-2723 Msa1385360:CDS
AACGGCGGCCGTAACTATAA+CGG 0.599287 tig0020748:+1821 None:intergenic
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 tig0020748:-1878 Msa1385360:CDS
GGTGTGGTTCCTCTACGCCT+AGG 0.606362 tig0020748:-3151 Msa1385360:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 tig0020748:+2169 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 tig0020748:+2523 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 tig0020748:+2388 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 tig0020748:+2522 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 tig0020748:+2468 None:intergenic
ATCACAGCCGAAACAGCGAT+GGG 0.621115 tig0020748:+2739 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 tig0020748:+1719 None:intergenic
TTCTGGTGTCCTAGGCGTAG+AGG 0.622900 tig0020748:+3142 None:intergenic
AGACAGTTTCTATGGGGCGT+AGG 0.622986 tig0020748:+2157 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 tig0020748:-2692 Msa1385360:intron
AAGTTGGTGACCTGATGACA+GGG 0.627282 tig0020748:+1774 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 tig0020748:+2175 None:intergenic
AAGTTCGGGATGGATTGGTG+TGG 0.636372 tig0020748:-3167 None:intergenic
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 tig0020748:+2443 None:intergenic
TAGACATGTCTGTGAAGATG+CGG 0.645281 tig0020748:+1937 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 tig0020748:+2121 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 tig0020748:-1862 Msa1385360:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 tig0020748:-2536 Msa1385360:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 tig0020748:+2229 None:intergenic
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 tig0020748:+2178 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 tig0020748:+1720 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 tig0020748:+2122 None:intergenic
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 tig0020748:+2541 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 tig0020748:-2418 Msa1385360:CDS
TGTTTCGGCTGTGATACCGG+AGG 0.717886 tig0020748:-2731 Msa1385360:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 tig0020748:+2151 None:intergenic
GTTACGGCCGCCGTTCACCG+GGG 0.732311 tig0020748:-1813 Msa1385360:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 tig0020748:-2437 Msa1385360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTTGAACAATCAAAATAGA+TGG - tig0020748:1898-1917 Msa1385360:CDS 25.0%
! AGTTGAACAATCAAAATAGA+TGG - tig0020748:1898-1917 Msa1385360:CDS 25.0%
CACCTATCGTTAATGAAAAA+CGG - tig0020748:2022-2041 Msa1385360:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG + tig0020748:2063-2082 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG + tig0020748:2511-2530 None:intergenic 30.0%
CACCTATCGTTAATGAAAAA+CGG - tig0020748:2022-2041 Msa1385360:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG + tig0020748:2063-2082 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG + tig0020748:2511-2530 None:intergenic 30.0%
! CATATTGACTAGTCAATGTC+AGG - tig0020748:1772-1791 Msa1385360:CDS 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG + tig0020748:2027-2046 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG + tig0020748:2503-2522 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG + tig0020748:2512-2531 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG + tig0020748:3138-3157 None:intergenic 35.0%
! CATATTGACTAGTCAATGTC+AGG - tig0020748:1772-1791 Msa1385360:CDS 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG + tig0020748:2027-2046 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG + tig0020748:2503-2522 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG + tig0020748:2512-2531 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG + tig0020748:3138-3157 None:intergenic 35.0%
TCGTTCATGGTTCGATATTC+TGG + tig0020748:1731-1750 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG - tig0020748:1736-1755 Msa1385360:CDS 40.0%
TCATGCCTTTACTTCGTTCA+TGG + tig0020748:1744-1763 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG + tig0020748:1836-1855 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG - tig0020748:1836-1855 Msa1385360:CDS 40.0%
ATTGCCTGATCGAATTGATC+AGG - tig0020748:1923-1942 Msa1385360:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG + tig0020748:1930-1949 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG - tig0020748:1939-1958 Msa1385360:CDS 40.0%
AGAACAAGGTTCAAGTCTAC+CGG - tig0020748:1953-1972 Msa1385360:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG + tig0020748:2017-2036 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG + tig0020748:2057-2076 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG - tig0020748:2160-2179 Msa1385360:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG + tig0020748:2408-2427 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG - tig0020748:2517-2536 Msa1385360:CDS 40.0%
TCAGGTAGACAGTTTCTATG+GGG + tig0020748:2705-2724 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG + tig0020748:2706-2725 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG + tig0020748:2707-2726 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG + tig0020748:2919-2938 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG + tig0020748:3008-3027 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG - tig0020748:3008-3027 Msa1385360:intron 40.0%
CCTTAGGACCGTTATAGTTA+CGG - tig0020748:3024-3043 Msa1385360:intron 40.0%
AAGTCGTAAGACCATGTATG+GGG + tig0020748:3137-3156 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG + tig0020748:3139-3158 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG - tig0020748:3139-3158 Msa1385360:CDS 40.0%
TCGTTCATGGTTCGATATTC+TGG + tig0020748:1731-1750 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG - tig0020748:1736-1755 Msa1385360:CDS 40.0%
TCATGCCTTTACTTCGTTCA+TGG + tig0020748:1744-1763 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG + tig0020748:1836-1855 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG - tig0020748:1836-1855 Msa1385360:CDS 40.0%
ATTGCCTGATCGAATTGATC+AGG - tig0020748:1923-1942 Msa1385360:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG + tig0020748:1930-1949 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG - tig0020748:1939-1958 Msa1385360:CDS 40.0%
AGAACAAGGTTCAAGTCTAC+CGG - tig0020748:1953-1972 Msa1385360:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG + tig0020748:2017-2036 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG + tig0020748:2057-2076 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG - tig0020748:2160-2179 Msa1385360:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG + tig0020748:2408-2427 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG - tig0020748:2517-2536 Msa1385360:CDS 40.0%
TCAGGTAGACAGTTTCTATG+GGG + tig0020748:2705-2724 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG + tig0020748:2706-2725 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG + tig0020748:2707-2726 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG + tig0020748:2919-2938 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG + tig0020748:3008-3027 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG - tig0020748:3008-3027 Msa1385360:intron 40.0%
CCTTAGGACCGTTATAGTTA+CGG - tig0020748:3024-3043 Msa1385360:intron 40.0%
AAGTCGTAAGACCATGTATG+GGG + tig0020748:3137-3156 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG + tig0020748:3139-3158 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG - tig0020748:3139-3158 Msa1385360:CDS 40.0%
GTTCGATATTCTGGTGTCCT+AGG + tig0020748:1722-1741 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG - tig0020748:1789-1808 Msa1385360:CDS 45.0%
GTCCTAATTCTTGACTGGAG+AGG - tig0020748:1794-1813 Msa1385360:CDS 45.0%
GTCCTCTCCAGTCAAGAATT+AGG + tig0020748:1799-1818 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG + tig0020748:1837-1856 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG - tig0020748:1835-1854 Msa1385360:CDS 45.0%
ATCCCTTGAATAGCTAGGGA+TGG + tig0020748:1841-1860 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG - tig0020748:1840-1859 Msa1385360:CDS 45.0%
TCCCTAGCTATTCAAGGGAT+GGG - tig0020748:1841-1860 Msa1385360:CDS 45.0%
TTCAAGTCTACCGGTCTGTT+AGG - tig0020748:1962-1981 Msa1385360:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG + tig0020748:1991-2010 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG - tig0020748:2159-2178 Msa1385360:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG - tig0020748:2161-2180 Msa1385360:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG - tig0020748:2242-2261 Msa1385360:CDS 45.0%
ATTAAAGCGGTACGTGAGCT+GGG + tig0020748:2375-2394 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG - tig0020748:2375-2394 Msa1385360:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG + tig0020748:2409-2428 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG + tig0020748:2413-2432 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG + tig0020748:2414-2433 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG - tig0020748:2413-2432 Msa1385360:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG - tig0020748:2758-2777 Msa1385360:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG + tig0020748:2868-2887 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG + tig0020748:2869-2888 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG - tig0020748:2868-2887 Msa1385360:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG - tig0020748:2869-2888 Msa1385360:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG - tig0020748:2883-2902 Msa1385360:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG + tig0020748:3007-3026 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG + tig0020748:3027-3046 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG + tig0020748:3082-3101 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG - tig0020748:3093-3112 Msa1385360:intron 45.0%
AGTCGTAAGACCATGTATGG+GGG + tig0020748:3136-3155 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG - tig0020748:3155-3174 Msa1385360:CDS 45.0%
GTTCGATATTCTGGTGTCCT+AGG + tig0020748:1722-1741 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG - tig0020748:1789-1808 Msa1385360:CDS 45.0%
GTCCTAATTCTTGACTGGAG+AGG - tig0020748:1794-1813 Msa1385360:CDS 45.0%
GTCCTCTCCAGTCAAGAATT+AGG + tig0020748:1799-1818 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG + tig0020748:1837-1856 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG - tig0020748:1835-1854 Msa1385360:CDS 45.0%
ATCCCTTGAATAGCTAGGGA+TGG + tig0020748:1841-1860 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG - tig0020748:1840-1859 Msa1385360:CDS 45.0%
TCCCTAGCTATTCAAGGGAT+GGG - tig0020748:1841-1860 Msa1385360:CDS 45.0%
TTCAAGTCTACCGGTCTGTT+AGG - tig0020748:1962-1981 Msa1385360:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG + tig0020748:1991-2010 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG - tig0020748:2159-2178 Msa1385360:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG - tig0020748:2161-2180 Msa1385360:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG - tig0020748:2242-2261 Msa1385360:CDS 45.0%
ATTAAAGCGGTACGTGAGCT+GGG + tig0020748:2375-2394 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG - tig0020748:2375-2394 Msa1385360:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG + tig0020748:2409-2428 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG + tig0020748:2413-2432 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG + tig0020748:2414-2433 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG - tig0020748:2413-2432 Msa1385360:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG - tig0020748:2758-2777 Msa1385360:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG + tig0020748:2868-2887 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG + tig0020748:2869-2888 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG - tig0020748:2868-2887 Msa1385360:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG - tig0020748:2869-2888 Msa1385360:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG - tig0020748:2883-2902 Msa1385360:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG + tig0020748:3007-3026 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG + tig0020748:3027-3046 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG + tig0020748:3082-3101 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG - tig0020748:3093-3112 Msa1385360:intron 45.0%
AGTCGTAAGACCATGTATGG+GGG + tig0020748:3136-3155 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG - tig0020748:3155-3174 Msa1385360:CDS 45.0%
TTGACTGGAGAGGACACCAA+AGG - tig0020748:1804-1823 Msa1385360:CDS 50.0%
CCCCATCCCTTGAATAGCTA+GGG + tig0020748:1845-1864 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG - tig0020748:1842-1861 Msa1385360:CDS 50.0%
CCTAGCTATTCAAGGGATGG+GGG - tig0020748:1843-1862 Msa1385360:CDS 50.0%
CAGAGAACCCATCGCTGTTT+CGG - tig0020748:2107-2126 Msa1385360:intron 50.0%
ATCACAGCCGAAACAGCGAT+GGG + tig0020748:2117-2136 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG + tig0020748:2118-2137 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG + tig0020748:2249-2268 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG + tig0020748:2289-2308 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG + tig0020748:2339-2358 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG + tig0020748:2350-2369 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG + tig0020748:2376-2395 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG - tig0020748:2374-2393 Msa1385360:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG - tig0020748:2416-2435 Msa1385360:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG + tig0020748:2449-2468 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG + tig0020748:2681-2700 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG + tig0020748:2699-2718 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG + tig0020748:2734-2753 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG + tig0020748:2775-2794 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG - tig0020748:2772-2791 Msa1385360:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG + tig0020748:2820-2839 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG - tig0020748:2848-2867 Msa1385360:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG - tig0020748:2849-2868 Msa1385360:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG + tig0020748:2856-2875 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG + tig0020748:2959-2978 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG + tig0020748:2970-2989 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG - tig0020748:2970-2989 Msa1385360:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG + tig0020748:3035-3054 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG + tig0020748:3083-3102 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG + tig0020748:3098-3117 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG - tig0020748:3100-3119 Msa1385360:intron 50.0%
TTGACTGGAGAGGACACCAA+AGG - tig0020748:1804-1823 Msa1385360:CDS 50.0%
CCCCATCCCTTGAATAGCTA+GGG + tig0020748:1845-1864 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG - tig0020748:1842-1861 Msa1385360:CDS 50.0%
CCTAGCTATTCAAGGGATGG+GGG - tig0020748:1843-1862 Msa1385360:CDS 50.0%
CAGAGAACCCATCGCTGTTT+CGG - tig0020748:2107-2126 Msa1385360:intron 50.0%
ATCACAGCCGAAACAGCGAT+GGG + tig0020748:2117-2136 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG + tig0020748:2118-2137 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG + tig0020748:2249-2268 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG + tig0020748:2289-2308 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG + tig0020748:2339-2358 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG + tig0020748:2350-2369 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG + tig0020748:2376-2395 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG - tig0020748:2374-2393 Msa1385360:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG - tig0020748:2416-2435 Msa1385360:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG + tig0020748:2449-2468 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG + tig0020748:2681-2700 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG + tig0020748:2699-2718 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG + tig0020748:2734-2753 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG + tig0020748:2775-2794 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG - tig0020748:2772-2791 Msa1385360:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG + tig0020748:2820-2839 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG - tig0020748:2848-2867 Msa1385360:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG - tig0020748:2849-2868 Msa1385360:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG + tig0020748:2856-2875 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG + tig0020748:2959-2978 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG + tig0020748:2970-2989 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG - tig0020748:2970-2989 Msa1385360:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG + tig0020748:3035-3054 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG + tig0020748:3083-3102 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG + tig0020748:3098-3117 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG - tig0020748:3100-3119 Msa1385360:intron 50.0%
TTCTGGTGTCCTAGGCGTAG+AGG + tig0020748:1714-1733 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG + tig0020748:1846-1865 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG - tig0020748:1850-1869 Msa1385360:CDS 55.0%
! GCTGAGGCATCCTAACAGAC+CGG + tig0020748:1975-1994 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG - tig0020748:2082-2101 Msa1385360:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG - tig0020748:2083-2102 Msa1385360:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG - tig0020748:2119-2138 Msa1385360:intron 55.0%
TGTTTCGGCTGTGATACCGG+AGG - tig0020748:2122-2141 Msa1385360:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG - tig0020748:2165-2184 Msa1385360:CDS 55.0%
AAACGCTGGGTAGCCAAGTG+CGG + tig0020748:2225-2244 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG + tig0020748:2238-2257 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG + tig0020748:2239-2258 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG - tig0020748:2253-2272 Msa1385360:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG - tig0020748:2283-2302 Msa1385360:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG + tig0020748:2288-2307 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG - tig0020748:2288-2307 Msa1385360:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG + tig0020748:2294-2313 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG + tig0020748:2315-2334 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG - tig0020748:2317-2336 Msa1385360:intron 55.0%
TCTAACGCCCACACCGGATA+TGG - tig0020748:2323-2342 Msa1385360:intron 55.0%
GTTCGGTCCATATCCGGTGT+GGG + tig0020748:2333-2352 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG + tig0020748:2334-2353 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG + tig0020748:2388-2407 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG + tig0020748:2463-2482 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG + tig0020748:2468-2487 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG - tig0020748:2467-2486 Msa1385360:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG - tig0020748:2468-2487 Msa1385360:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG + tig0020748:2473-2492 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG + tig0020748:2558-2577 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG + tig0020748:2619-2638 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG - tig0020748:2617-2636 Msa1385360:intron 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG + tig0020748:2627-2646 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG + tig0020748:2650-2669 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG + tig0020748:2658-2677 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG + tig0020748:2659-2678 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG + tig0020748:2668-2687 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG - tig0020748:2669-2688 Msa1385360:intron 55.0%
! GCACGCCTCCGTTACCTTTT+GGG - tig0020748:2670-2689 Msa1385360:intron 55.0%
GTCTACCTGAGACTGTCCCT+TGG - tig0020748:2715-2734 Msa1385360:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG + tig0020748:2723-2742 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG - tig0020748:2725-2744 Msa1385360:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG + tig0020748:2735-2754 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG - tig0020748:2732-2751 Msa1385360:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG + tig0020748:2809-2828 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG + tig0020748:2833-2852 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG + tig0020748:2857-2876 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG + tig0020748:2863-2882 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG + tig0020748:2971-2990 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG - tig0020748:2971-2990 Msa1385360:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG + tig0020748:2984-3003 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG + tig0020748:3075-3094 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG - tig0020748:3099-3118 Msa1385360:intron 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG + tig0020748:1714-1733 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG + tig0020748:1846-1865 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG - tig0020748:1850-1869 Msa1385360:CDS 55.0%
! GCTGAGGCATCCTAACAGAC+CGG + tig0020748:1975-1994 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG - tig0020748:2082-2101 Msa1385360:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG - tig0020748:2083-2102 Msa1385360:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG - tig0020748:2119-2138 Msa1385360:intron 55.0%
TGTTTCGGCTGTGATACCGG+AGG - tig0020748:2122-2141 Msa1385360:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG - tig0020748:2165-2184 Msa1385360:CDS 55.0%
AAACGCTGGGTAGCCAAGTG+CGG + tig0020748:2225-2244 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG + tig0020748:2238-2257 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG + tig0020748:2239-2258 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG - tig0020748:2253-2272 Msa1385360:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG - tig0020748:2283-2302 Msa1385360:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG + tig0020748:2288-2307 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG - tig0020748:2288-2307 Msa1385360:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG + tig0020748:2294-2313 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG + tig0020748:2315-2334 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG - tig0020748:2317-2336 Msa1385360:intron 55.0%
TCTAACGCCCACACCGGATA+TGG - tig0020748:2323-2342 Msa1385360:intron 55.0%
GTTCGGTCCATATCCGGTGT+GGG + tig0020748:2333-2352 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG + tig0020748:2334-2353 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG + tig0020748:2388-2407 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG + tig0020748:2463-2482 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG + tig0020748:2468-2487 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG - tig0020748:2467-2486 Msa1385360:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG - tig0020748:2468-2487 Msa1385360:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG + tig0020748:2473-2492 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG + tig0020748:2558-2577 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG + tig0020748:2619-2638 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG - tig0020748:2617-2636 Msa1385360:intron 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG + tig0020748:2627-2646 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG + tig0020748:2650-2669 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG + tig0020748:2658-2677 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG + tig0020748:2659-2678 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG + tig0020748:2668-2687 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG - tig0020748:2669-2688 Msa1385360:intron 55.0%
! GCACGCCTCCGTTACCTTTT+GGG - tig0020748:2670-2689 Msa1385360:intron 55.0%
GTCTACCTGAGACTGTCCCT+TGG - tig0020748:2715-2734 Msa1385360:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG + tig0020748:2723-2742 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG - tig0020748:2725-2744 Msa1385360:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG + tig0020748:2735-2754 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG - tig0020748:2732-2751 Msa1385360:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG + tig0020748:2809-2828 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG + tig0020748:2833-2852 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG + tig0020748:2857-2876 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG + tig0020748:2863-2882 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG + tig0020748:2971-2990 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG - tig0020748:2971-2990 Msa1385360:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG + tig0020748:2984-3003 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG + tig0020748:3075-3094 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG - tig0020748:3099-3118 Msa1385360:intron 55.0%
GGTGTGGTTCCTCTACGCCT+AGG - tig0020748:1702-1721 Msa1385360:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG + tig0020748:1823-1842 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG + tig0020748:1830-1849 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG - tig0020748:1856-1875 Msa1385360:CDS 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG - tig0020748:2084-2103 Msa1385360:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG - tig0020748:2129-2148 Msa1385360:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG - tig0020748:2130-2149 Msa1385360:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG - tig0020748:2143-2162 Msa1385360:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG - tig0020748:2164-2183 Msa1385360:CDS 60.0%
GCAGTTATCCGCTCCGCACT+TGG - tig0020748:2209-2228 Msa1385360:CDS 60.0%
GGCTACCCAGCGTTTACCGT+TGG - tig0020748:2230-2249 Msa1385360:CDS 60.0%
CTAGTACGAGAGGACCGGGA+AGG + tig0020748:2284-2303 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG - tig0020748:2282-2301 Msa1385360:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG + tig0020748:2472-2491 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG - tig0020748:2469-2488 Msa1385360:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG - tig0020748:2549-2568 Msa1385360:CDS 60.0%
CGTCGAGCAGGGACGAAAGT+CGG + tig0020748:2575-2594 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG - tig0020748:2573-2592 Msa1385360:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG - tig0020748:2574-2593 Msa1385360:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG - tig0020748:2616-2635 Msa1385360:intron 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG + tig0020748:2620-2639 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG - tig0020748:2673-2692 Msa1385360:intron 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG + tig0020748:2678-2697 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG + tig0020748:2805-2824 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG + tig0020748:2806-2825 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG + tig0020748:2807-2826 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG + tig0020748:2808-2827 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG + tig0020748:2829-2848 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG + tig0020748:2836-2855 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG - tig0020748:2889-2908 Msa1385360:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG + tig0020748:2904-2923 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG + tig0020748:2947-2966 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG - tig0020748:2975-2994 Msa1385360:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG - tig0020748:2991-3010 Msa1385360:intron 60.0%
TAGTTACGGCCGCCGTTCAC+CGG - tig0020748:3038-3057 Msa1385360:intron 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG + tig0020748:3105-3124 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG - tig0020748:3104-3123 Msa1385360:intron 60.0%
GGTGTGGTTCCTCTACGCCT+AGG - tig0020748:1702-1721 Msa1385360:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG + tig0020748:1823-1842 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG + tig0020748:1830-1849 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG - tig0020748:1856-1875 Msa1385360:CDS 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG - tig0020748:2084-2103 Msa1385360:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG - tig0020748:2129-2148 Msa1385360:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG - tig0020748:2130-2149 Msa1385360:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG - tig0020748:2143-2162 Msa1385360:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG - tig0020748:2164-2183 Msa1385360:CDS 60.0%
GCAGTTATCCGCTCCGCACT+TGG - tig0020748:2209-2228 Msa1385360:CDS 60.0%
GGCTACCCAGCGTTTACCGT+TGG - tig0020748:2230-2249 Msa1385360:CDS 60.0%
CTAGTACGAGAGGACCGGGA+AGG + tig0020748:2284-2303 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG - tig0020748:2282-2301 Msa1385360:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG + tig0020748:2472-2491 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG - tig0020748:2469-2488 Msa1385360:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG - tig0020748:2549-2568 Msa1385360:CDS 60.0%
CGTCGAGCAGGGACGAAAGT+CGG + tig0020748:2575-2594 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG - tig0020748:2573-2592 Msa1385360:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG - tig0020748:2574-2593 Msa1385360:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG - tig0020748:2616-2635 Msa1385360:intron 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG + tig0020748:2620-2639 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG - tig0020748:2673-2692 Msa1385360:intron 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG + tig0020748:2678-2697 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG + tig0020748:2805-2824 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG + tig0020748:2806-2825 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG + tig0020748:2807-2826 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG + tig0020748:2808-2827 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG + tig0020748:2829-2848 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG + tig0020748:2836-2855 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG - tig0020748:2889-2908 Msa1385360:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG + tig0020748:2904-2923 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG + tig0020748:2947-2966 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG - tig0020748:2975-2994 Msa1385360:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG - tig0020748:2991-3010 Msa1385360:intron 60.0%
TAGTTACGGCCGCCGTTCAC+CGG - tig0020748:3038-3057 Msa1385360:intron 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG + tig0020748:3105-3124 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG - tig0020748:3104-3123 Msa1385360:intron 60.0%
ATGGGTTCTCTGCCCCTGCG+GGG + tig0020748:2099-2118 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG + tig0020748:2100-2119 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG + tig0020748:2101-2120 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG - tig0020748:2128-2147 Msa1385360:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG - tig0020748:2137-2156 Msa1385360:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG + tig0020748:2141-2160 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG + tig0020748:2220-2239 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG - tig0020748:2267-2286 Msa1385360:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG - tig0020748:2394-2413 Msa1385360:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG + tig0020748:2434-2453 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG - tig0020748:2435-2454 Msa1385360:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG + tig0020748:2529-2548 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG - tig0020748:2530-2549 Msa1385360:CDS 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG + tig0020748:2543-2562 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG + tig0020748:2544-2563 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG + tig0020748:2548-2567 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG - tig0020748:2577-2596 Msa1385360:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG - tig0020748:2578-2597 Msa1385360:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG + tig0020748:2586-2605 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG - tig0020748:2632-2651 Msa1385360:intron 65.0%
TCCTCGGGCCAGACGGAGAT+TGG + tig0020748:2643-2662 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG + tig0020748:2687-2706 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG + tig0020748:2804-2823 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG - tig0020748:2825-2844 Msa1385360:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG + tig0020748:2952-2971 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG - tig0020748:3039-3058 Msa1385360:intron 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG - tig0020748:3069-3088 Msa1385360:intron 65.0%
CAGGCGTCAGCCCCCATACA+TGG - tig0020748:3123-3142 Msa1385360:intron 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG + tig0020748:2099-2118 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG + tig0020748:2100-2119 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG + tig0020748:2101-2120 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG - tig0020748:2128-2147 Msa1385360:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG - tig0020748:2137-2156 Msa1385360:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG + tig0020748:2141-2160 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG + tig0020748:2220-2239 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG - tig0020748:2267-2286 Msa1385360:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG - tig0020748:2394-2413 Msa1385360:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG + tig0020748:2434-2453 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG - tig0020748:2435-2454 Msa1385360:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG + tig0020748:2529-2548 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG - tig0020748:2530-2549 Msa1385360:CDS 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG + tig0020748:2543-2562 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG + tig0020748:2544-2563 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG + tig0020748:2548-2567 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG - tig0020748:2577-2596 Msa1385360:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG - tig0020748:2578-2597 Msa1385360:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG + tig0020748:2586-2605 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG - tig0020748:2632-2651 Msa1385360:intron 65.0%
TCCTCGGGCCAGACGGAGAT+TGG + tig0020748:2643-2662 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG + tig0020748:2687-2706 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG + tig0020748:2804-2823 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG - tig0020748:2825-2844 Msa1385360:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG + tig0020748:2952-2971 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG - tig0020748:3039-3058 Msa1385360:intron 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG - tig0020748:3069-3088 Msa1385360:intron 65.0%
CAGGCGTCAGCCCCCATACA+TGG - tig0020748:3123-3142 Msa1385360:intron 65.0%
GTTCTCTGCCCCTGCGGGGA+TGG + tig0020748:2095-2114 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG + tig0020748:2272-2291 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG - tig0020748:2539-2558 Msa1385360:CDS 70.0%
GCAAGACCCACCCGTCGAGC+AGG + tig0020748:2587-2606 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG - tig0020748:2639-2658 Msa1385360:intron 70.0%
ACTGATGGCTCGAGCCCCCC+CGG - tig0020748:2787-2806 Msa1385360:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG - tig0020748:3040-3059 Msa1385360:intron 70.0%
ACCGAAGCCCCGGTGAACGG+CGG + tig0020748:3050-3069 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG + tig0020748:3053-3072 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG - tig0020748:3053-3072 Msa1385360:intron 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG + tig0020748:2095-2114 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG + tig0020748:2272-2291 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG - tig0020748:2539-2558 Msa1385360:CDS 70.0%
GCAAGACCCACCCGTCGAGC+AGG + tig0020748:2587-2606 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG - tig0020748:2639-2658 Msa1385360:intron 70.0%
ACTGATGGCTCGAGCCCCCC+CGG - tig0020748:2787-2806 Msa1385360:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG - tig0020748:3040-3059 Msa1385360:intron 70.0%
ACCGAAGCCCCGGTGAACGG+CGG + tig0020748:3050-3069 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG + tig0020748:3053-3072 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG - tig0020748:3053-3072 Msa1385360:intron 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG - tig0020748:2791-2810 Msa1385360:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG - tig0020748:3046-3065 Msa1385360:intron 75.0%
GAAGCCGGCGACCGAAGCCC+CGG + tig0020748:3060-3079 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG + tig0020748:3111-3130 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG + tig0020748:3115-3134 None:intergenic 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG - tig0020748:2791-2810 Msa1385360:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG - tig0020748:3046-3065 Msa1385360:intron 75.0%
GAAGCCGGCGACCGAAGCCC+CGG + tig0020748:3060-3079 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG + tig0020748:3111-3130 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG + tig0020748:3115-3134 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG - tig0020748:2794-2813 Msa1385360:intron 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG - tig0020748:2794-2813 Msa1385360:intron 80.0%
Chromosome Type Strat End Strand Name
tig0020748 gene 1695 3180 1695 ID=Msa1385360;Name=Msa1385360
tig0020748 mRNA 1695 3180 1695 ID=Msa1385360-mRNA-1;Parent=Msa1385360;Name=Msa1385360-mRNA-1;_AED=0.47;_eAED=0.48;_QI=0|0|0|0.5|1|1|6|0|280
tig0020748 exon 3124 3180 3124 ID=Msa1385360-mRNA-1:exon:9563;Parent=Msa1385360-mRNA-1
tig0020748 exon 2931 3005 2931 ID=Msa1385360-mRNA-1:exon:9562;Parent=Msa1385360-mRNA-1
tig0020748 exon 2693 2771 2693 ID=Msa1385360-mRNA-1:exon:9561;Parent=Msa1385360-mRNA-1
tig0020748 exon 2361 2571 2361 ID=Msa1385360-mRNA-1:exon:9560;Parent=Msa1385360-mRNA-1
tig0020748 exon 2122 2266 2122 ID=Msa1385360-mRNA-1:exon:9559;Parent=Msa1385360-mRNA-1
tig0020748 exon 1695 1970 1695 ID=Msa1385360-mRNA-1:exon:9558;Parent=Msa1385360-mRNA-1
tig0020748 CDS 3124 3180 3124 ID=Msa1385360-mRNA-1:cds;Parent=Msa1385360-mRNA-1
tig0020748 CDS 2931 3005 2931 ID=Msa1385360-mRNA-1:cds;Parent=Msa1385360-mRNA-1
tig0020748 CDS 2693 2771 2693 ID=Msa1385360-mRNA-1:cds;Parent=Msa1385360-mRNA-1
tig0020748 CDS 2361 2571 2361 ID=Msa1385360-mRNA-1:cds;Parent=Msa1385360-mRNA-1
tig0020748 CDS 2122 2266 2122 ID=Msa1385360-mRNA-1:cds;Parent=Msa1385360-mRNA-1
tig0020748 CDS 1695 1970 1695 ID=Msa1385360-mRNA-1:cds;Parent=Msa1385360-mRNA-1
Gene Sequence

>Msa1385360

ATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA

Protein sequence

>Msa1385360

MDWCGSSTPRTPEYRTMNERFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*