AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0867660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0867660 MtrunA17_Chr4g0016151 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa0867660 MtrunA17_CPg0492351 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa0867660 MtrunA17_Chr7g0229411 98.780 82 1 0 199 280 1 82 3.39e-54 170
Msa0867660 MtrunA17_Chr4g0000631 98.780 82 1 0 199 280 1 82 3.50e-54 170
Msa0867660 MtrunA17_Chr5g0435911 97.561 82 2 0 199 280 1 82 1.38e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 122 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCATGGTTCGATATTC+TGG 0.185586 6_1:-754042 None:intergenic
TGCACGCCTCCGTTACCTTT+TGG 0.196515 6_1:+754983 Msa0867660:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 6_1:+754688 Msa0867660:CDS
TCATGCCTTTACTTCGTTCA+TGG 0.272664 6_1:-754055 None:intergenic
GGCTGTGATACCGGAGGCTC+TGG 0.279951 6_1:+754442 Msa0867660:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 6_1:-755018 None:intergenic
GCACGAAAGGCGTAACGATC+TGG 0.311741 6_1:-755282 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 6_1:+754637 Msa0867660:CDS
CAGAGAACCCATCGCTGTTT+CGG 0.333458 6_1:+754421 Msa0867660:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 6_1:-754954 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 6_1:+754782 Msa0867660:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 6_1:+755407 Msa0867660:CDS
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 6_1:+755367 Msa0867660:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 6_1:-755450 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 6_1:-754814 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 6_1:-754687 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 6_1:+754781 Msa0867660:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 6_1:+754689 Msa0867660:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 6_1:+755360 Msa0867660:CDS
CGCTGTTTCGGCTGTGATAC+CGG 0.403155 6_1:+754433 Msa0867660:CDS
AATAGGAGAGCACTCATCTT+GGG 0.408942 6_1:+754474 Msa0867660:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 6_1:-755416 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 6_1:+754930 Msa0867660:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 6_1:-754774 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 6_1:+755413 Msa0867660:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 6_1:-754719 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 6_1:+755352 Msa0867660:CDS
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 6_1:-755426 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 6_1:+755418 Msa0867660:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 6_1:+755353 Msa0867660:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 6_1:+754212 Msa0867660:CDS
CCACCAAGTTCGGGATGGAT+TGG 0.447763 6_1:+753995 None:intergenic
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 6_1:-754720 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 6_1:+755383 Msa0867660:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 6_1:-754650 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 6_1:-755034 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 6_1:-754661 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 6_1:-755371 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 6_1:+754931 Msa0867660:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 6_1:+755039 Msa0867660:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 6_1:-754783 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 6_1:+755453 Msa0867660:CDS
GTTCGATATTCTGGTGTCCT+AGG 0.478291 6_1:-754033 None:intergenic
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 6_1:-754452 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 6_1:+754946 Msa0867660:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 6_1:-755409 None:intergenic
GAATAGGAGAGCACTCATCT+TGG 0.487596 6_1:+754473 Msa0867660:CDS
ACAAGGAATTTCGCTACCTT+AGG 0.488888 6_1:+755322 Msa0867660:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 6_1:+754457 Msa0867660:CDS
CACGAAAGGCGTAACGATCT+GGG 0.491297 6_1:-755281 None:intergenic
GAAGTTGGTGACCTGATGAC+AGG 0.495416 6_1:-755394 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 6_1:-755318 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 6_1:+754237 Msa0867660:CDS
TTCCTTAACCTTCCGGCACT+GGG 0.504342 6_1:+755414 Msa0867660:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 6_1:-755364 None:intergenic
CACTGTCTCGGAGAGAGGCT+CGG 0.506062 6_1:-755258 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 6_1:-754745 None:intergenic
GCTGTGATACCGGAGGCTCT+GGG 0.508804 6_1:+754443 Msa0867660:CDS
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 6_1:-755017 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 6_1:-754931 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 6_1:-755319 None:intergenic
TAACGATCTGGGCACTGTCT+CGG 0.513539 6_1:-755270 None:intergenic
ATGACCTGATCAATTCGATC+AGG 0.514268 6_1:-754241 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.516913 6_1:+755285 Msa0867660:CDS
TGACCTGATGACAGGGAAGC+CGG 0.518242 6_1:-755386 None:intergenic
CCTTAGGACCGTTATAGTTA+CGG 0.519214 6_1:+755338 Msa0867660:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 6_1:-754970 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 6_1:-754969 None:intergenic
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 6_1:+754783 Msa0867660:CDS
CCTTGGTCTGTACTGGCACA+AGG 0.538614 6_1:+755046 Msa0867660:CDS
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 6_1:-754686 None:intergenic
CTGGGCACTGTCTCGGAGAG+AGG 0.542198 6_1:-755263 None:intergenic
AAGGTTTGGCACCTCGATGT+CGG 0.545826 6_1:-754760 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 6_1:+754708 Msa0867660:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 6_1:-754784 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 6_1:-755449 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 6_1:+754953 Msa0867660:CDS
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 6_1:-754725 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 6_1:-755361 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.565799 6_1:+755284 Msa0867660:CDS
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 6_1:+754451 Msa0867660:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 6_1:-755422 None:intergenic
TATCACAGCCGAAACAGCGA+TGG 0.574058 6_1:-754429 None:intergenic
CCGTAACTATAACGGTCCTA+AGG 0.574485 6_1:-755338 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 6_1:+754727 Msa0867660:CDS
TAAGTTCCGACCCGCACGAA+AGG 0.581321 6_1:-755295 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 6_1:+755029 Msa0867660:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 6_1:-754979 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 6_1:-754930 None:intergenic
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 6_1:-754961 None:intergenic
CTGTGATACCGGAGGCTCTG+GGG 0.598997 6_1:+754444 Msa0867660:CDS
AACGGCGGCCGTAACTATAA+CGG 0.599287 6_1:-755346 None:intergenic
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 6_1:+755289 Msa0867660:CDS
GGTGTGGTTCCTCTACGCCT+AGG 0.606362 6_1:+754016 Msa0867660:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 6_1:-754998 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 6_1:-754644 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 6_1:-754779 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 6_1:-754645 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 6_1:-754699 None:intergenic
ATCACAGCCGAAACAGCGAT+GGG 0.621115 6_1:-754428 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 6_1:-755448 None:intergenic
TTCTGGTGTCCTAGGCGTAG+AGG 0.622900 6_1:-754025 None:intergenic
AGACAGTTTCTATGGGGCGT+AGG 0.622986 6_1:-755010 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 6_1:+754475 Msa0867660:CDS
AAGTTGGTGACCTGATGACA+GGG 0.627282 6_1:-755393 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 6_1:-754992 None:intergenic
AAGTTCGGGATGGATTGGTG+TGG 0.636372 6_1:+754000 None:intergenic
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 6_1:-754724 None:intergenic
TAGACATGTCTGTGAAGATG+CGG 0.645281 6_1:-755230 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 6_1:-755046 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 6_1:+755305 Msa0867660:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 6_1:+754631 Msa0867660:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 6_1:-754938 None:intergenic
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 6_1:-754989 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 6_1:-755447 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 6_1:-755045 None:intergenic
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 6_1:-754626 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 6_1:+754749 Msa0867660:CDS
TGTTTCGGCTGTGATACCGG+AGG 0.717886 6_1:+754436 Msa0867660:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 6_1:-755016 None:intergenic
GTTACGGCCGCCGTTCACCG+GGG 0.732311 6_1:+755354 Msa0867660:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 6_1:+754730 Msa0867660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTTGAACAATCAAAATAGA+TGG + chr6_1:754212-754231 Msa0867660:CDS 25.0%
! AGTTGAACAATCAAAATAGA+TGG + chr6_1:754212-754231 Msa0867660:CDS 25.0%
CACCTATCGTTAATGAAAAA+CGG + chr6_1:754336-754355 Msa0867660:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - chr6_1:754377-754396 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - chr6_1:754825-754844 None:intergenic 30.0%
CACCTATCGTTAATGAAAAA+CGG + chr6_1:754336-754355 Msa0867660:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - chr6_1:754377-754396 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - chr6_1:754825-754844 None:intergenic 30.0%
! CATATTGACTAGTCAATGTC+AGG + chr6_1:754086-754105 Msa0867660:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - chr6_1:754341-754360 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - chr6_1:754817-754836 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - chr6_1:754826-754845 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - chr6_1:755452-755471 None:intergenic 35.0%
! CATATTGACTAGTCAATGTC+AGG + chr6_1:754086-754105 Msa0867660:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - chr6_1:754341-754360 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - chr6_1:754817-754836 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - chr6_1:754826-754845 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - chr6_1:755452-755471 None:intergenic 35.0%
TCGTTCATGGTTCGATATTC+TGG - chr6_1:754045-754064 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + chr6_1:754050-754069 Msa0867660:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - chr6_1:754058-754077 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - chr6_1:754150-754169 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + chr6_1:754150-754169 Msa0867660:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + chr6_1:754237-754256 Msa0867660:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - chr6_1:754244-754263 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + chr6_1:754253-754272 Msa0867660:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + chr6_1:754267-754286 Msa0867660:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - chr6_1:754331-754350 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - chr6_1:754371-754390 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + chr6_1:754474-754493 Msa0867660:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - chr6_1:754722-754741 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + chr6_1:754831-754850 Msa0867660:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - chr6_1:755019-755038 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - chr6_1:755020-755039 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - chr6_1:755021-755040 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - chr6_1:755233-755252 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - chr6_1:755322-755341 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + chr6_1:755322-755341 Msa0867660:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + chr6_1:755338-755357 Msa0867660:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - chr6_1:755451-755470 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - chr6_1:755453-755472 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + chr6_1:755453-755472 Msa0867660:CDS 40.0%
TCGTTCATGGTTCGATATTC+TGG - chr6_1:754045-754064 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + chr6_1:754050-754069 Msa0867660:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - chr6_1:754058-754077 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - chr6_1:754150-754169 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + chr6_1:754150-754169 Msa0867660:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + chr6_1:754237-754256 Msa0867660:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - chr6_1:754244-754263 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + chr6_1:754253-754272 Msa0867660:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + chr6_1:754267-754286 Msa0867660:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - chr6_1:754331-754350 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - chr6_1:754371-754390 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + chr6_1:754474-754493 Msa0867660:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - chr6_1:754722-754741 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + chr6_1:754831-754850 Msa0867660:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - chr6_1:755019-755038 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - chr6_1:755020-755039 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - chr6_1:755021-755040 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - chr6_1:755233-755252 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - chr6_1:755322-755341 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + chr6_1:755322-755341 Msa0867660:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + chr6_1:755338-755357 Msa0867660:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - chr6_1:755451-755470 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - chr6_1:755453-755472 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + chr6_1:755453-755472 Msa0867660:CDS 40.0%
GTTCGATATTCTGGTGTCCT+AGG - chr6_1:754036-754055 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + chr6_1:754103-754122 Msa0867660:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + chr6_1:754108-754127 Msa0867660:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - chr6_1:754113-754132 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - chr6_1:754151-754170 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + chr6_1:754149-754168 Msa0867660:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - chr6_1:754155-754174 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + chr6_1:754154-754173 Msa0867660:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + chr6_1:754155-754174 Msa0867660:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + chr6_1:754276-754295 Msa0867660:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - chr6_1:754305-754324 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + chr6_1:754473-754492 Msa0867660:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + chr6_1:754475-754494 Msa0867660:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + chr6_1:754556-754575 Msa0867660:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - chr6_1:754689-754708 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + chr6_1:754689-754708 Msa0867660:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - chr6_1:754723-754742 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - chr6_1:754727-754746 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - chr6_1:754728-754747 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + chr6_1:754727-754746 Msa0867660:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + chr6_1:755072-755091 Msa0867660:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - chr6_1:755182-755201 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - chr6_1:755183-755202 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + chr6_1:755182-755201 Msa0867660:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + chr6_1:755183-755202 Msa0867660:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + chr6_1:755197-755216 Msa0867660:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - chr6_1:755321-755340 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - chr6_1:755341-755360 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - chr6_1:755396-755415 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + chr6_1:755407-755426 Msa0867660:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - chr6_1:755450-755469 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + chr6_1:755469-755488 Msa0867660:CDS 45.0%
GTTCGATATTCTGGTGTCCT+AGG - chr6_1:754036-754055 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + chr6_1:754103-754122 Msa0867660:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + chr6_1:754108-754127 Msa0867660:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - chr6_1:754113-754132 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - chr6_1:754151-754170 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + chr6_1:754149-754168 Msa0867660:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - chr6_1:754155-754174 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + chr6_1:754154-754173 Msa0867660:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + chr6_1:754155-754174 Msa0867660:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + chr6_1:754276-754295 Msa0867660:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - chr6_1:754305-754324 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + chr6_1:754473-754492 Msa0867660:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + chr6_1:754475-754494 Msa0867660:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + chr6_1:754556-754575 Msa0867660:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - chr6_1:754689-754708 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + chr6_1:754689-754708 Msa0867660:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - chr6_1:754723-754742 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - chr6_1:754727-754746 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - chr6_1:754728-754747 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + chr6_1:754727-754746 Msa0867660:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + chr6_1:755072-755091 Msa0867660:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - chr6_1:755182-755201 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - chr6_1:755183-755202 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + chr6_1:755182-755201 Msa0867660:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + chr6_1:755183-755202 Msa0867660:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + chr6_1:755197-755216 Msa0867660:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - chr6_1:755321-755340 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - chr6_1:755341-755360 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - chr6_1:755396-755415 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + chr6_1:755407-755426 Msa0867660:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - chr6_1:755450-755469 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + chr6_1:755469-755488 Msa0867660:CDS 45.0%
TTGACTGGAGAGGACACCAA+AGG + chr6_1:754118-754137 Msa0867660:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - chr6_1:754159-754178 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + chr6_1:754156-754175 Msa0867660:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + chr6_1:754157-754176 Msa0867660:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + chr6_1:754421-754440 Msa0867660:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - chr6_1:754431-754450 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - chr6_1:754432-754451 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - chr6_1:754563-754582 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - chr6_1:754603-754622 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - chr6_1:754653-754672 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - chr6_1:754664-754683 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - chr6_1:754690-754709 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + chr6_1:754688-754707 Msa0867660:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + chr6_1:754730-754749 Msa0867660:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - chr6_1:754763-754782 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - chr6_1:754995-755014 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - chr6_1:755013-755032 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - chr6_1:755048-755067 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - chr6_1:755089-755108 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + chr6_1:755086-755105 Msa0867660:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - chr6_1:755134-755153 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + chr6_1:755162-755181 Msa0867660:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + chr6_1:755163-755182 Msa0867660:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - chr6_1:755170-755189 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - chr6_1:755273-755292 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - chr6_1:755284-755303 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + chr6_1:755284-755303 Msa0867660:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - chr6_1:755349-755368 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - chr6_1:755397-755416 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - chr6_1:755412-755431 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + chr6_1:755414-755433 Msa0867660:CDS 50.0%
TTGACTGGAGAGGACACCAA+AGG + chr6_1:754118-754137 Msa0867660:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - chr6_1:754159-754178 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + chr6_1:754156-754175 Msa0867660:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + chr6_1:754157-754176 Msa0867660:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + chr6_1:754421-754440 Msa0867660:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - chr6_1:754431-754450 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - chr6_1:754432-754451 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - chr6_1:754563-754582 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - chr6_1:754603-754622 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - chr6_1:754653-754672 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - chr6_1:754664-754683 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - chr6_1:754690-754709 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + chr6_1:754688-754707 Msa0867660:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + chr6_1:754730-754749 Msa0867660:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - chr6_1:754763-754782 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - chr6_1:754995-755014 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - chr6_1:755013-755032 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - chr6_1:755048-755067 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - chr6_1:755089-755108 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + chr6_1:755086-755105 Msa0867660:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - chr6_1:755134-755153 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + chr6_1:755162-755181 Msa0867660:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + chr6_1:755163-755182 Msa0867660:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - chr6_1:755170-755189 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - chr6_1:755273-755292 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - chr6_1:755284-755303 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + chr6_1:755284-755303 Msa0867660:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - chr6_1:755349-755368 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - chr6_1:755397-755416 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - chr6_1:755412-755431 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + chr6_1:755414-755433 Msa0867660:CDS 50.0%
TTCTGGTGTCCTAGGCGTAG+AGG - chr6_1:754028-754047 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - chr6_1:754160-754179 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + chr6_1:754164-754183 Msa0867660:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - chr6_1:754289-754308 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + chr6_1:754396-754415 Msa0867660:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + chr6_1:754397-754416 Msa0867660:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + chr6_1:754433-754452 Msa0867660:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + chr6_1:754436-754455 Msa0867660:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + chr6_1:754479-754498 Msa0867660:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - chr6_1:754539-754558 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - chr6_1:754552-754571 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - chr6_1:754553-754572 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + chr6_1:754567-754586 Msa0867660:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + chr6_1:754597-754616 Msa0867660:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - chr6_1:754602-754621 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + chr6_1:754602-754621 Msa0867660:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - chr6_1:754608-754627 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - chr6_1:754629-754648 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + chr6_1:754631-754650 Msa0867660:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + chr6_1:754637-754656 Msa0867660:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - chr6_1:754647-754666 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - chr6_1:754648-754667 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - chr6_1:754702-754721 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - chr6_1:754777-754796 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - chr6_1:754782-754801 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + chr6_1:754781-754800 Msa0867660:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + chr6_1:754782-754801 Msa0867660:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - chr6_1:754787-754806 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - chr6_1:754872-754891 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - chr6_1:754933-754952 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + chr6_1:754931-754950 Msa0867660:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - chr6_1:754941-754960 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - chr6_1:754964-754983 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - chr6_1:754972-754991 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - chr6_1:754973-754992 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - chr6_1:754982-755001 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + chr6_1:754983-755002 Msa0867660:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + chr6_1:754984-755003 Msa0867660:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + chr6_1:755029-755048 Msa0867660:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - chr6_1:755037-755056 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + chr6_1:755039-755058 Msa0867660:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - chr6_1:755049-755068 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + chr6_1:755046-755065 Msa0867660:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - chr6_1:755123-755142 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - chr6_1:755147-755166 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - chr6_1:755171-755190 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - chr6_1:755177-755196 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - chr6_1:755285-755304 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + chr6_1:755285-755304 Msa0867660:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - chr6_1:755298-755317 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - chr6_1:755389-755408 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + chr6_1:755413-755432 Msa0867660:CDS 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG - chr6_1:754028-754047 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - chr6_1:754160-754179 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + chr6_1:754164-754183 Msa0867660:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - chr6_1:754289-754308 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + chr6_1:754396-754415 Msa0867660:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + chr6_1:754397-754416 Msa0867660:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + chr6_1:754433-754452 Msa0867660:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + chr6_1:754436-754455 Msa0867660:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + chr6_1:754479-754498 Msa0867660:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - chr6_1:754539-754558 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - chr6_1:754552-754571 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - chr6_1:754553-754572 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + chr6_1:754567-754586 Msa0867660:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + chr6_1:754597-754616 Msa0867660:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - chr6_1:754602-754621 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + chr6_1:754602-754621 Msa0867660:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - chr6_1:754608-754627 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - chr6_1:754629-754648 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + chr6_1:754631-754650 Msa0867660:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + chr6_1:754637-754656 Msa0867660:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - chr6_1:754647-754666 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - chr6_1:754648-754667 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - chr6_1:754702-754721 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - chr6_1:754777-754796 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - chr6_1:754782-754801 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + chr6_1:754781-754800 Msa0867660:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + chr6_1:754782-754801 Msa0867660:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - chr6_1:754787-754806 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - chr6_1:754872-754891 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - chr6_1:754933-754952 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + chr6_1:754931-754950 Msa0867660:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - chr6_1:754941-754960 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - chr6_1:754964-754983 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - chr6_1:754972-754991 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - chr6_1:754973-754992 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - chr6_1:754982-755001 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + chr6_1:754983-755002 Msa0867660:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + chr6_1:754984-755003 Msa0867660:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + chr6_1:755029-755048 Msa0867660:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - chr6_1:755037-755056 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + chr6_1:755039-755058 Msa0867660:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - chr6_1:755049-755068 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + chr6_1:755046-755065 Msa0867660:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - chr6_1:755123-755142 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - chr6_1:755147-755166 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - chr6_1:755171-755190 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - chr6_1:755177-755196 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - chr6_1:755285-755304 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + chr6_1:755285-755304 Msa0867660:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - chr6_1:755298-755317 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - chr6_1:755389-755408 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + chr6_1:755413-755432 Msa0867660:CDS 55.0%
GGTGTGGTTCCTCTACGCCT+AGG + chr6_1:754016-754035 Msa0867660:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - chr6_1:754137-754156 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - chr6_1:754144-754163 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + chr6_1:754170-754189 Msa0867660:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + chr6_1:754398-754417 Msa0867660:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + chr6_1:754443-754462 Msa0867660:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + chr6_1:754444-754463 Msa0867660:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + chr6_1:754457-754476 Msa0867660:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + chr6_1:754478-754497 Msa0867660:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + chr6_1:754523-754542 Msa0867660:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + chr6_1:754544-754563 Msa0867660:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - chr6_1:754598-754617 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + chr6_1:754596-754615 Msa0867660:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - chr6_1:754786-754805 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + chr6_1:754783-754802 Msa0867660:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + chr6_1:754863-754882 Msa0867660:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - chr6_1:754889-754908 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + chr6_1:754887-754906 Msa0867660:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + chr6_1:754888-754907 Msa0867660:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + chr6_1:754930-754949 Msa0867660:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - chr6_1:754934-754953 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + chr6_1:754987-755006 Msa0867660:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - chr6_1:754992-755011 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - chr6_1:755119-755138 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - chr6_1:755120-755139 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - chr6_1:755121-755140 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - chr6_1:755122-755141 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - chr6_1:755143-755162 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - chr6_1:755150-755169 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + chr6_1:755203-755222 Msa0867660:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - chr6_1:755218-755237 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - chr6_1:755261-755280 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + chr6_1:755289-755308 Msa0867660:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + chr6_1:755305-755324 Msa0867660:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + chr6_1:755352-755371 Msa0867660:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - chr6_1:755419-755438 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + chr6_1:755418-755437 Msa0867660:CDS 60.0%
GGTGTGGTTCCTCTACGCCT+AGG + chr6_1:754016-754035 Msa0867660:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - chr6_1:754137-754156 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - chr6_1:754144-754163 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + chr6_1:754170-754189 Msa0867660:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + chr6_1:754398-754417 Msa0867660:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + chr6_1:754443-754462 Msa0867660:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + chr6_1:754444-754463 Msa0867660:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + chr6_1:754457-754476 Msa0867660:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + chr6_1:754478-754497 Msa0867660:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + chr6_1:754523-754542 Msa0867660:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + chr6_1:754544-754563 Msa0867660:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - chr6_1:754598-754617 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + chr6_1:754596-754615 Msa0867660:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - chr6_1:754786-754805 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + chr6_1:754783-754802 Msa0867660:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + chr6_1:754863-754882 Msa0867660:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - chr6_1:754889-754908 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + chr6_1:754887-754906 Msa0867660:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + chr6_1:754888-754907 Msa0867660:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + chr6_1:754930-754949 Msa0867660:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - chr6_1:754934-754953 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + chr6_1:754987-755006 Msa0867660:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - chr6_1:754992-755011 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - chr6_1:755119-755138 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - chr6_1:755120-755139 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - chr6_1:755121-755140 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - chr6_1:755122-755141 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - chr6_1:755143-755162 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - chr6_1:755150-755169 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + chr6_1:755203-755222 Msa0867660:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - chr6_1:755218-755237 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - chr6_1:755261-755280 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + chr6_1:755289-755308 Msa0867660:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + chr6_1:755305-755324 Msa0867660:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + chr6_1:755352-755371 Msa0867660:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - chr6_1:755419-755438 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + chr6_1:755418-755437 Msa0867660:CDS 60.0%
ATGGGTTCTCTGCCCCTGCG+GGG - chr6_1:754413-754432 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - chr6_1:754414-754433 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - chr6_1:754415-754434 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + chr6_1:754442-754461 Msa0867660:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + chr6_1:754451-754470 Msa0867660:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - chr6_1:754455-754474 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - chr6_1:754534-754553 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + chr6_1:754581-754600 Msa0867660:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + chr6_1:754708-754727 Msa0867660:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - chr6_1:754748-754767 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + chr6_1:754749-754768 Msa0867660:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - chr6_1:754843-754862 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + chr6_1:754844-754863 Msa0867660:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - chr6_1:754857-754876 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - chr6_1:754858-754877 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - chr6_1:754862-754881 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + chr6_1:754891-754910 Msa0867660:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + chr6_1:754892-754911 Msa0867660:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - chr6_1:754900-754919 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + chr6_1:754946-754965 Msa0867660:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - chr6_1:754957-754976 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - chr6_1:755001-755020 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - chr6_1:755118-755137 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + chr6_1:755139-755158 Msa0867660:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - chr6_1:755266-755285 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + chr6_1:755353-755372 Msa0867660:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + chr6_1:755383-755402 Msa0867660:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + chr6_1:755437-755456 Msa0867660:CDS 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG - chr6_1:754413-754432 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - chr6_1:754414-754433 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - chr6_1:754415-754434 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + chr6_1:754442-754461 Msa0867660:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + chr6_1:754451-754470 Msa0867660:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - chr6_1:754455-754474 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - chr6_1:754534-754553 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + chr6_1:754581-754600 Msa0867660:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + chr6_1:754708-754727 Msa0867660:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - chr6_1:754748-754767 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + chr6_1:754749-754768 Msa0867660:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - chr6_1:754843-754862 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + chr6_1:754844-754863 Msa0867660:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - chr6_1:754857-754876 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - chr6_1:754858-754877 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - chr6_1:754862-754881 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + chr6_1:754891-754910 Msa0867660:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + chr6_1:754892-754911 Msa0867660:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - chr6_1:754900-754919 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + chr6_1:754946-754965 Msa0867660:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - chr6_1:754957-754976 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - chr6_1:755001-755020 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - chr6_1:755118-755137 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + chr6_1:755139-755158 Msa0867660:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - chr6_1:755266-755285 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + chr6_1:755353-755372 Msa0867660:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + chr6_1:755383-755402 Msa0867660:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + chr6_1:755437-755456 Msa0867660:CDS 65.0%
GTTCTCTGCCCCTGCGGGGA+TGG - chr6_1:754409-754428 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - chr6_1:754586-754605 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + chr6_1:754853-754872 Msa0867660:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - chr6_1:754901-754920 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + chr6_1:754953-754972 Msa0867660:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + chr6_1:755101-755120 Msa0867660:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + chr6_1:755354-755373 Msa0867660:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - chr6_1:755364-755383 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - chr6_1:755367-755386 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + chr6_1:755367-755386 Msa0867660:CDS 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG - chr6_1:754409-754428 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - chr6_1:754586-754605 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + chr6_1:754853-754872 Msa0867660:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - chr6_1:754901-754920 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + chr6_1:754953-754972 Msa0867660:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + chr6_1:755101-755120 Msa0867660:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + chr6_1:755354-755373 Msa0867660:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - chr6_1:755364-755383 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - chr6_1:755367-755386 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + chr6_1:755367-755386 Msa0867660:CDS 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG + chr6_1:755105-755124 Msa0867660:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + chr6_1:755360-755379 Msa0867660:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - chr6_1:755374-755393 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - chr6_1:755425-755444 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - chr6_1:755429-755448 None:intergenic 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG + chr6_1:755105-755124 Msa0867660:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + chr6_1:755360-755379 Msa0867660:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - chr6_1:755374-755393 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - chr6_1:755425-755444 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - chr6_1:755429-755448 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + chr6_1:755108-755127 Msa0867660:intron 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + chr6_1:755108-755127 Msa0867660:intron 80.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 754009 755494 754009 ID=Msa0867660;Name=Msa0867660
chr6_1 mRNA 754009 755494 754009 ID=Msa0867660-mRNA-1;Parent=Msa0867660;Name=Msa0867660-mRNA-1;_AED=0.47;_eAED=0.73;_QI=0|0|0|0.5|1|1|6|0|280
chr6_1 exon 754009 754065 754009 ID=Msa0867660-mRNA-1:exon:207;Parent=Msa0867660-mRNA-1
chr6_1 exon 754184 754258 754184 ID=Msa0867660-mRNA-1:exon:208;Parent=Msa0867660-mRNA-1
chr6_1 exon 754418 754496 754418 ID=Msa0867660-mRNA-1:exon:209;Parent=Msa0867660-mRNA-1
chr6_1 exon 754618 754828 754618 ID=Msa0867660-mRNA-1:exon:210;Parent=Msa0867660-mRNA-1
chr6_1 exon 754923 755067 754923 ID=Msa0867660-mRNA-1:exon:211;Parent=Msa0867660-mRNA-1
chr6_1 exon 755219 755494 755219 ID=Msa0867660-mRNA-1:exon:212;Parent=Msa0867660-mRNA-1
chr6_1 CDS 754009 754065 754009 ID=Msa0867660-mRNA-1:cds;Parent=Msa0867660-mRNA-1
chr6_1 CDS 754184 754258 754184 ID=Msa0867660-mRNA-1:cds;Parent=Msa0867660-mRNA-1
chr6_1 CDS 754418 754496 754418 ID=Msa0867660-mRNA-1:cds;Parent=Msa0867660-mRNA-1
chr6_1 CDS 754618 754828 754618 ID=Msa0867660-mRNA-1:cds;Parent=Msa0867660-mRNA-1
chr6_1 CDS 754923 755067 754923 ID=Msa0867660-mRNA-1:cds;Parent=Msa0867660-mRNA-1
chr6_1 CDS 755219 755494 755219 ID=Msa0867660-mRNA-1:cds;Parent=Msa0867660-mRNA-1
Gene Sequence

>Msa0867660

ATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA
Protein sequence

>Msa0867660

MDWCGSSTPRTPEYRTMNERFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*