AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1354790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354790 MtrunA17_Chr4g0016151 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1354790 MtrunA17_CPg0492351 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1354790 MtrunA17_Chr7g0229411 98.780 82 1 0 199 280 1 82 3.39e-54 170
Msa1354790 MtrunA17_Chr4g0000631 98.780 82 1 0 199 280 1 82 3.50e-54 170
Msa1354790 MtrunA17_Chr5g0435911 97.561 82 2 0 199 280 1 82 1.38e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 122 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCATGGTTCGATATTC+TGG 0.185586 tig0014543:-529771 None:intergenic
TGCACGCCTCCGTTACCTTT+TGG 0.196515 tig0014543:+530712 Msa1354790:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 tig0014543:+530417 Msa1354790:CDS
TCATGCCTTTACTTCGTTCA+TGG 0.272664 tig0014543:-529784 None:intergenic
GGCTGTGATACCGGAGGCTC+TGG 0.279951 tig0014543:+530171 Msa1354790:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 tig0014543:-530747 None:intergenic
GCACGAAAGGCGTAACGATC+TGG 0.311741 tig0014543:-531011 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 tig0014543:+530366 Msa1354790:CDS
CAGAGAACCCATCGCTGTTT+CGG 0.333458 tig0014543:+530150 Msa1354790:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 tig0014543:-530683 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 tig0014543:+530511 Msa1354790:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 tig0014543:+531136 Msa1354790:CDS
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 tig0014543:+531096 Msa1354790:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 tig0014543:-531179 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 tig0014543:-530543 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 tig0014543:-530416 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 tig0014543:+530510 Msa1354790:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 tig0014543:+530418 Msa1354790:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 tig0014543:+531089 Msa1354790:CDS
CGCTGTTTCGGCTGTGATAC+CGG 0.403155 tig0014543:+530162 Msa1354790:CDS
AATAGGAGAGCACTCATCTT+GGG 0.408942 tig0014543:+530203 Msa1354790:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 tig0014543:-531145 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 tig0014543:+530659 Msa1354790:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 tig0014543:-530503 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 tig0014543:+531142 Msa1354790:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 tig0014543:-530448 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 tig0014543:+531081 Msa1354790:CDS
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 tig0014543:-531155 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 tig0014543:+531147 Msa1354790:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 tig0014543:+531082 Msa1354790:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 tig0014543:+529941 Msa1354790:CDS
CCACCAAGTTCGGGATGGAT+TGG 0.447763 tig0014543:+529724 None:intergenic
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 tig0014543:-530449 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 tig0014543:+531112 Msa1354790:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 tig0014543:-530379 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 tig0014543:-530763 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 tig0014543:-530390 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 tig0014543:-531100 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 tig0014543:+530660 Msa1354790:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 tig0014543:+530768 Msa1354790:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 tig0014543:-530512 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 tig0014543:+531182 Msa1354790:CDS
GTTCGATATTCTGGTGTCCT+AGG 0.478291 tig0014543:-529762 None:intergenic
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 tig0014543:-530181 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 tig0014543:+530675 Msa1354790:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 tig0014543:-531138 None:intergenic
GAATAGGAGAGCACTCATCT+TGG 0.487596 tig0014543:+530202 Msa1354790:CDS
ACAAGGAATTTCGCTACCTT+AGG 0.488888 tig0014543:+531051 Msa1354790:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 tig0014543:+530186 Msa1354790:CDS
CACGAAAGGCGTAACGATCT+GGG 0.491297 tig0014543:-531010 None:intergenic
GAAGTTGGTGACCTGATGAC+AGG 0.495416 tig0014543:-531123 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 tig0014543:-531047 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 tig0014543:+529966 Msa1354790:CDS
TTCCTTAACCTTCCGGCACT+GGG 0.504342 tig0014543:+531143 Msa1354790:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 tig0014543:-531093 None:intergenic
CACTGTCTCGGAGAGAGGCT+CGG 0.506062 tig0014543:-530987 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 tig0014543:-530474 None:intergenic
GCTGTGATACCGGAGGCTCT+GGG 0.508804 tig0014543:+530172 Msa1354790:CDS
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 tig0014543:-530746 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 tig0014543:-530660 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 tig0014543:-531048 None:intergenic
TAACGATCTGGGCACTGTCT+CGG 0.513539 tig0014543:-530999 None:intergenic
ATGACCTGATCAATTCGATC+AGG 0.514268 tig0014543:-529970 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.516913 tig0014543:+531014 Msa1354790:CDS
TGACCTGATGACAGGGAAGC+CGG 0.518242 tig0014543:-531115 None:intergenic
CCTTAGGACCGTTATAGTTA+CGG 0.519214 tig0014543:+531067 Msa1354790:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 tig0014543:-530699 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 tig0014543:-530698 None:intergenic
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 tig0014543:+530512 Msa1354790:CDS
CCTTGGTCTGTACTGGCACA+AGG 0.538614 tig0014543:+530775 Msa1354790:CDS
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 tig0014543:-530415 None:intergenic
CTGGGCACTGTCTCGGAGAG+AGG 0.542198 tig0014543:-530992 None:intergenic
AAGGTTTGGCACCTCGATGT+CGG 0.545826 tig0014543:-530489 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 tig0014543:+530437 Msa1354790:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 tig0014543:-530513 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 tig0014543:-531178 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 tig0014543:+530682 Msa1354790:CDS
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 tig0014543:-530454 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 tig0014543:-531090 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.565799 tig0014543:+531013 Msa1354790:CDS
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 tig0014543:+530180 Msa1354790:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 tig0014543:-531151 None:intergenic
TATCACAGCCGAAACAGCGA+TGG 0.574058 tig0014543:-530158 None:intergenic
CCGTAACTATAACGGTCCTA+AGG 0.574485 tig0014543:-531067 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 tig0014543:+530456 Msa1354790:CDS
TAAGTTCCGACCCGCACGAA+AGG 0.581321 tig0014543:-531024 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 tig0014543:+530758 Msa1354790:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 tig0014543:-530708 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 tig0014543:-530659 None:intergenic
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 tig0014543:-530690 None:intergenic
CTGTGATACCGGAGGCTCTG+GGG 0.598997 tig0014543:+530173 Msa1354790:CDS
AACGGCGGCCGTAACTATAA+CGG 0.599287 tig0014543:-531075 None:intergenic
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 tig0014543:+531018 Msa1354790:CDS
GGTGTGGTTCCTCTACGCCT+AGG 0.606362 tig0014543:+529745 Msa1354790:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 tig0014543:-530727 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 tig0014543:-530373 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 tig0014543:-530508 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 tig0014543:-530374 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 tig0014543:-530428 None:intergenic
ATCACAGCCGAAACAGCGAT+GGG 0.621115 tig0014543:-530157 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 tig0014543:-531177 None:intergenic
TTCTGGTGTCCTAGGCGTAG+AGG 0.622900 tig0014543:-529754 None:intergenic
AGACAGTTTCTATGGGGCGT+AGG 0.622986 tig0014543:-530739 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 tig0014543:+530204 Msa1354790:CDS
AAGTTGGTGACCTGATGACA+GGG 0.627282 tig0014543:-531122 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 tig0014543:-530721 None:intergenic
AAGTTCGGGATGGATTGGTG+TGG 0.636372 tig0014543:+529729 None:intergenic
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 tig0014543:-530453 None:intergenic
TAGACATGTCTGTGAAGATG+CGG 0.645281 tig0014543:-530959 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 tig0014543:-530775 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 tig0014543:+531034 Msa1354790:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 tig0014543:+530360 Msa1354790:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 tig0014543:-530667 None:intergenic
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 tig0014543:-530718 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 tig0014543:-531176 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 tig0014543:-530774 None:intergenic
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 tig0014543:-530355 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 tig0014543:+530478 Msa1354790:CDS
TGTTTCGGCTGTGATACCGG+AGG 0.717886 tig0014543:+530165 Msa1354790:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 tig0014543:-530745 None:intergenic
GTTACGGCCGCCGTTCACCG+GGG 0.732311 tig0014543:+531083 Msa1354790:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 tig0014543:+530459 Msa1354790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTTGAACAATCAAAATAGA+TGG + tig0014543:529941-529960 Msa1354790:CDS 25.0%
! AGTTGAACAATCAAAATAGA+TGG + tig0014543:529941-529960 Msa1354790:CDS 25.0%
CACCTATCGTTAATGAAAAA+CGG + tig0014543:530065-530084 Msa1354790:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - tig0014543:530106-530125 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - tig0014543:530554-530573 None:intergenic 30.0%
CACCTATCGTTAATGAAAAA+CGG + tig0014543:530065-530084 Msa1354790:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - tig0014543:530106-530125 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - tig0014543:530554-530573 None:intergenic 30.0%
! CATATTGACTAGTCAATGTC+AGG + tig0014543:529815-529834 Msa1354790:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - tig0014543:530070-530089 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - tig0014543:530546-530565 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - tig0014543:530555-530574 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - tig0014543:531181-531200 None:intergenic 35.0%
! CATATTGACTAGTCAATGTC+AGG + tig0014543:529815-529834 Msa1354790:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - tig0014543:530070-530089 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - tig0014543:530546-530565 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - tig0014543:530555-530574 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - tig0014543:531181-531200 None:intergenic 35.0%
TCGTTCATGGTTCGATATTC+TGG - tig0014543:529774-529793 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + tig0014543:529779-529798 Msa1354790:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - tig0014543:529787-529806 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - tig0014543:529879-529898 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + tig0014543:529879-529898 Msa1354790:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + tig0014543:529966-529985 Msa1354790:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - tig0014543:529973-529992 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + tig0014543:529982-530001 Msa1354790:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + tig0014543:529996-530015 Msa1354790:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - tig0014543:530060-530079 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - tig0014543:530100-530119 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + tig0014543:530203-530222 Msa1354790:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - tig0014543:530451-530470 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + tig0014543:530560-530579 Msa1354790:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - tig0014543:530748-530767 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - tig0014543:530749-530768 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - tig0014543:530750-530769 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - tig0014543:530962-530981 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - tig0014543:531051-531070 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + tig0014543:531051-531070 Msa1354790:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + tig0014543:531067-531086 Msa1354790:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - tig0014543:531180-531199 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - tig0014543:531182-531201 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + tig0014543:531182-531201 Msa1354790:CDS 40.0%
TCGTTCATGGTTCGATATTC+TGG - tig0014543:529774-529793 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + tig0014543:529779-529798 Msa1354790:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - tig0014543:529787-529806 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - tig0014543:529879-529898 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + tig0014543:529879-529898 Msa1354790:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + tig0014543:529966-529985 Msa1354790:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - tig0014543:529973-529992 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + tig0014543:529982-530001 Msa1354790:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + tig0014543:529996-530015 Msa1354790:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - tig0014543:530060-530079 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - tig0014543:530100-530119 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + tig0014543:530203-530222 Msa1354790:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - tig0014543:530451-530470 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + tig0014543:530560-530579 Msa1354790:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - tig0014543:530748-530767 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - tig0014543:530749-530768 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - tig0014543:530750-530769 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - tig0014543:530962-530981 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - tig0014543:531051-531070 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + tig0014543:531051-531070 Msa1354790:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + tig0014543:531067-531086 Msa1354790:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - tig0014543:531180-531199 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - tig0014543:531182-531201 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + tig0014543:531182-531201 Msa1354790:CDS 40.0%
GTTCGATATTCTGGTGTCCT+AGG - tig0014543:529765-529784 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + tig0014543:529832-529851 Msa1354790:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + tig0014543:529837-529856 Msa1354790:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - tig0014543:529842-529861 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - tig0014543:529880-529899 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + tig0014543:529878-529897 Msa1354790:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - tig0014543:529884-529903 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + tig0014543:529883-529902 Msa1354790:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + tig0014543:529884-529903 Msa1354790:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + tig0014543:530005-530024 Msa1354790:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - tig0014543:530034-530053 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + tig0014543:530202-530221 Msa1354790:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + tig0014543:530204-530223 Msa1354790:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + tig0014543:530285-530304 Msa1354790:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - tig0014543:530418-530437 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + tig0014543:530418-530437 Msa1354790:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - tig0014543:530452-530471 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - tig0014543:530456-530475 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - tig0014543:530457-530476 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + tig0014543:530456-530475 Msa1354790:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + tig0014543:530801-530820 Msa1354790:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - tig0014543:530911-530930 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - tig0014543:530912-530931 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + tig0014543:530911-530930 Msa1354790:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + tig0014543:530912-530931 Msa1354790:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + tig0014543:530926-530945 Msa1354790:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - tig0014543:531050-531069 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - tig0014543:531070-531089 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - tig0014543:531125-531144 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + tig0014543:531136-531155 Msa1354790:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - tig0014543:531179-531198 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + tig0014543:531198-531217 Msa1354790:CDS 45.0%
GTTCGATATTCTGGTGTCCT+AGG - tig0014543:529765-529784 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + tig0014543:529832-529851 Msa1354790:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + tig0014543:529837-529856 Msa1354790:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - tig0014543:529842-529861 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - tig0014543:529880-529899 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + tig0014543:529878-529897 Msa1354790:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - tig0014543:529884-529903 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + tig0014543:529883-529902 Msa1354790:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + tig0014543:529884-529903 Msa1354790:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + tig0014543:530005-530024 Msa1354790:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - tig0014543:530034-530053 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + tig0014543:530202-530221 Msa1354790:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + tig0014543:530204-530223 Msa1354790:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + tig0014543:530285-530304 Msa1354790:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - tig0014543:530418-530437 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + tig0014543:530418-530437 Msa1354790:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - tig0014543:530452-530471 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - tig0014543:530456-530475 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - tig0014543:530457-530476 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + tig0014543:530456-530475 Msa1354790:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + tig0014543:530801-530820 Msa1354790:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - tig0014543:530911-530930 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - tig0014543:530912-530931 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + tig0014543:530911-530930 Msa1354790:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + tig0014543:530912-530931 Msa1354790:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + tig0014543:530926-530945 Msa1354790:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - tig0014543:531050-531069 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - tig0014543:531070-531089 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - tig0014543:531125-531144 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + tig0014543:531136-531155 Msa1354790:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - tig0014543:531179-531198 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + tig0014543:531198-531217 Msa1354790:CDS 45.0%
TTGACTGGAGAGGACACCAA+AGG + tig0014543:529847-529866 Msa1354790:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - tig0014543:529888-529907 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + tig0014543:529885-529904 Msa1354790:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + tig0014543:529886-529905 Msa1354790:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + tig0014543:530150-530169 Msa1354790:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - tig0014543:530160-530179 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - tig0014543:530161-530180 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - tig0014543:530292-530311 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - tig0014543:530332-530351 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - tig0014543:530382-530401 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - tig0014543:530393-530412 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - tig0014543:530419-530438 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + tig0014543:530417-530436 Msa1354790:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + tig0014543:530459-530478 Msa1354790:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - tig0014543:530492-530511 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - tig0014543:530724-530743 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - tig0014543:530742-530761 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - tig0014543:530777-530796 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - tig0014543:530818-530837 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + tig0014543:530815-530834 Msa1354790:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - tig0014543:530863-530882 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + tig0014543:530891-530910 Msa1354790:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + tig0014543:530892-530911 Msa1354790:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - tig0014543:530899-530918 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - tig0014543:531002-531021 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - tig0014543:531013-531032 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + tig0014543:531013-531032 Msa1354790:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - tig0014543:531078-531097 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - tig0014543:531126-531145 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - tig0014543:531141-531160 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + tig0014543:531143-531162 Msa1354790:CDS 50.0%
TTGACTGGAGAGGACACCAA+AGG + tig0014543:529847-529866 Msa1354790:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - tig0014543:529888-529907 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + tig0014543:529885-529904 Msa1354790:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + tig0014543:529886-529905 Msa1354790:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + tig0014543:530150-530169 Msa1354790:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - tig0014543:530160-530179 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - tig0014543:530161-530180 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - tig0014543:530292-530311 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - tig0014543:530332-530351 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - tig0014543:530382-530401 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - tig0014543:530393-530412 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - tig0014543:530419-530438 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + tig0014543:530417-530436 Msa1354790:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + tig0014543:530459-530478 Msa1354790:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - tig0014543:530492-530511 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - tig0014543:530724-530743 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - tig0014543:530742-530761 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - tig0014543:530777-530796 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - tig0014543:530818-530837 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + tig0014543:530815-530834 Msa1354790:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - tig0014543:530863-530882 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + tig0014543:530891-530910 Msa1354790:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + tig0014543:530892-530911 Msa1354790:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - tig0014543:530899-530918 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - tig0014543:531002-531021 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - tig0014543:531013-531032 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + tig0014543:531013-531032 Msa1354790:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - tig0014543:531078-531097 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - tig0014543:531126-531145 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - tig0014543:531141-531160 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + tig0014543:531143-531162 Msa1354790:CDS 50.0%
TTCTGGTGTCCTAGGCGTAG+AGG - tig0014543:529757-529776 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - tig0014543:529889-529908 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + tig0014543:529893-529912 Msa1354790:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - tig0014543:530018-530037 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + tig0014543:530125-530144 Msa1354790:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + tig0014543:530126-530145 Msa1354790:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + tig0014543:530162-530181 Msa1354790:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + tig0014543:530165-530184 Msa1354790:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + tig0014543:530208-530227 Msa1354790:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - tig0014543:530268-530287 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - tig0014543:530281-530300 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - tig0014543:530282-530301 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + tig0014543:530296-530315 Msa1354790:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + tig0014543:530326-530345 Msa1354790:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - tig0014543:530331-530350 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + tig0014543:530331-530350 Msa1354790:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - tig0014543:530337-530356 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - tig0014543:530358-530377 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + tig0014543:530360-530379 Msa1354790:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + tig0014543:530366-530385 Msa1354790:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - tig0014543:530376-530395 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - tig0014543:530377-530396 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - tig0014543:530431-530450 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - tig0014543:530506-530525 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - tig0014543:530511-530530 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + tig0014543:530510-530529 Msa1354790:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + tig0014543:530511-530530 Msa1354790:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - tig0014543:530516-530535 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - tig0014543:530601-530620 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - tig0014543:530662-530681 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + tig0014543:530660-530679 Msa1354790:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - tig0014543:530670-530689 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - tig0014543:530693-530712 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - tig0014543:530701-530720 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - tig0014543:530702-530721 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - tig0014543:530711-530730 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + tig0014543:530712-530731 Msa1354790:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + tig0014543:530713-530732 Msa1354790:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + tig0014543:530758-530777 Msa1354790:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - tig0014543:530766-530785 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + tig0014543:530768-530787 Msa1354790:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - tig0014543:530778-530797 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + tig0014543:530775-530794 Msa1354790:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - tig0014543:530852-530871 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - tig0014543:530876-530895 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - tig0014543:530900-530919 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - tig0014543:530906-530925 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - tig0014543:531014-531033 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + tig0014543:531014-531033 Msa1354790:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - tig0014543:531027-531046 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - tig0014543:531118-531137 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + tig0014543:531142-531161 Msa1354790:CDS 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG - tig0014543:529757-529776 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - tig0014543:529889-529908 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + tig0014543:529893-529912 Msa1354790:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - tig0014543:530018-530037 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + tig0014543:530125-530144 Msa1354790:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + tig0014543:530126-530145 Msa1354790:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + tig0014543:530162-530181 Msa1354790:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + tig0014543:530165-530184 Msa1354790:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + tig0014543:530208-530227 Msa1354790:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - tig0014543:530268-530287 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - tig0014543:530281-530300 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - tig0014543:530282-530301 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + tig0014543:530296-530315 Msa1354790:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + tig0014543:530326-530345 Msa1354790:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - tig0014543:530331-530350 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + tig0014543:530331-530350 Msa1354790:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - tig0014543:530337-530356 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - tig0014543:530358-530377 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + tig0014543:530360-530379 Msa1354790:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + tig0014543:530366-530385 Msa1354790:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - tig0014543:530376-530395 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - tig0014543:530377-530396 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - tig0014543:530431-530450 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - tig0014543:530506-530525 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - tig0014543:530511-530530 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + tig0014543:530510-530529 Msa1354790:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + tig0014543:530511-530530 Msa1354790:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - tig0014543:530516-530535 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - tig0014543:530601-530620 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - tig0014543:530662-530681 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + tig0014543:530660-530679 Msa1354790:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - tig0014543:530670-530689 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - tig0014543:530693-530712 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - tig0014543:530701-530720 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - tig0014543:530702-530721 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - tig0014543:530711-530730 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + tig0014543:530712-530731 Msa1354790:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + tig0014543:530713-530732 Msa1354790:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + tig0014543:530758-530777 Msa1354790:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - tig0014543:530766-530785 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + tig0014543:530768-530787 Msa1354790:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - tig0014543:530778-530797 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + tig0014543:530775-530794 Msa1354790:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - tig0014543:530852-530871 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - tig0014543:530876-530895 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - tig0014543:530900-530919 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - tig0014543:530906-530925 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - tig0014543:531014-531033 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + tig0014543:531014-531033 Msa1354790:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - tig0014543:531027-531046 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - tig0014543:531118-531137 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + tig0014543:531142-531161 Msa1354790:CDS 55.0%
GGTGTGGTTCCTCTACGCCT+AGG + tig0014543:529745-529764 Msa1354790:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - tig0014543:529866-529885 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - tig0014543:529873-529892 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + tig0014543:529899-529918 Msa1354790:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + tig0014543:530127-530146 Msa1354790:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + tig0014543:530172-530191 Msa1354790:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + tig0014543:530173-530192 Msa1354790:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + tig0014543:530186-530205 Msa1354790:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + tig0014543:530207-530226 Msa1354790:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + tig0014543:530252-530271 Msa1354790:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + tig0014543:530273-530292 Msa1354790:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - tig0014543:530327-530346 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + tig0014543:530325-530344 Msa1354790:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - tig0014543:530515-530534 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + tig0014543:530512-530531 Msa1354790:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + tig0014543:530592-530611 Msa1354790:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - tig0014543:530618-530637 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + tig0014543:530616-530635 Msa1354790:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + tig0014543:530617-530636 Msa1354790:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + tig0014543:530659-530678 Msa1354790:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - tig0014543:530663-530682 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + tig0014543:530716-530735 Msa1354790:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - tig0014543:530721-530740 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - tig0014543:530848-530867 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - tig0014543:530849-530868 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - tig0014543:530850-530869 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - tig0014543:530851-530870 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - tig0014543:530872-530891 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - tig0014543:530879-530898 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + tig0014543:530932-530951 Msa1354790:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - tig0014543:530947-530966 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - tig0014543:530990-531009 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + tig0014543:531018-531037 Msa1354790:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + tig0014543:531034-531053 Msa1354790:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + tig0014543:531081-531100 Msa1354790:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - tig0014543:531148-531167 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + tig0014543:531147-531166 Msa1354790:CDS 60.0%
GGTGTGGTTCCTCTACGCCT+AGG + tig0014543:529745-529764 Msa1354790:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - tig0014543:529866-529885 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - tig0014543:529873-529892 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + tig0014543:529899-529918 Msa1354790:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + tig0014543:530127-530146 Msa1354790:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + tig0014543:530172-530191 Msa1354790:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + tig0014543:530173-530192 Msa1354790:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + tig0014543:530186-530205 Msa1354790:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + tig0014543:530207-530226 Msa1354790:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + tig0014543:530252-530271 Msa1354790:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + tig0014543:530273-530292 Msa1354790:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - tig0014543:530327-530346 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + tig0014543:530325-530344 Msa1354790:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - tig0014543:530515-530534 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + tig0014543:530512-530531 Msa1354790:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + tig0014543:530592-530611 Msa1354790:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - tig0014543:530618-530637 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + tig0014543:530616-530635 Msa1354790:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + tig0014543:530617-530636 Msa1354790:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + tig0014543:530659-530678 Msa1354790:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - tig0014543:530663-530682 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + tig0014543:530716-530735 Msa1354790:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - tig0014543:530721-530740 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - tig0014543:530848-530867 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - tig0014543:530849-530868 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - tig0014543:530850-530869 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - tig0014543:530851-530870 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - tig0014543:530872-530891 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - tig0014543:530879-530898 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + tig0014543:530932-530951 Msa1354790:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - tig0014543:530947-530966 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - tig0014543:530990-531009 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + tig0014543:531018-531037 Msa1354790:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + tig0014543:531034-531053 Msa1354790:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + tig0014543:531081-531100 Msa1354790:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - tig0014543:531148-531167 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + tig0014543:531147-531166 Msa1354790:CDS 60.0%
ATGGGTTCTCTGCCCCTGCG+GGG - tig0014543:530142-530161 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - tig0014543:530143-530162 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - tig0014543:530144-530163 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + tig0014543:530171-530190 Msa1354790:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + tig0014543:530180-530199 Msa1354790:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - tig0014543:530184-530203 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - tig0014543:530263-530282 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + tig0014543:530310-530329 Msa1354790:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + tig0014543:530437-530456 Msa1354790:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - tig0014543:530477-530496 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + tig0014543:530478-530497 Msa1354790:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - tig0014543:530572-530591 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + tig0014543:530573-530592 Msa1354790:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - tig0014543:530586-530605 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - tig0014543:530587-530606 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - tig0014543:530591-530610 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + tig0014543:530620-530639 Msa1354790:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + tig0014543:530621-530640 Msa1354790:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - tig0014543:530629-530648 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + tig0014543:530675-530694 Msa1354790:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - tig0014543:530686-530705 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - tig0014543:530730-530749 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - tig0014543:530847-530866 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + tig0014543:530868-530887 Msa1354790:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - tig0014543:530995-531014 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + tig0014543:531082-531101 Msa1354790:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + tig0014543:531112-531131 Msa1354790:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + tig0014543:531166-531185 Msa1354790:CDS 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG - tig0014543:530142-530161 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - tig0014543:530143-530162 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - tig0014543:530144-530163 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + tig0014543:530171-530190 Msa1354790:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + tig0014543:530180-530199 Msa1354790:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - tig0014543:530184-530203 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - tig0014543:530263-530282 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + tig0014543:530310-530329 Msa1354790:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + tig0014543:530437-530456 Msa1354790:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - tig0014543:530477-530496 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + tig0014543:530478-530497 Msa1354790:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - tig0014543:530572-530591 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + tig0014543:530573-530592 Msa1354790:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - tig0014543:530586-530605 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - tig0014543:530587-530606 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - tig0014543:530591-530610 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + tig0014543:530620-530639 Msa1354790:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + tig0014543:530621-530640 Msa1354790:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - tig0014543:530629-530648 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + tig0014543:530675-530694 Msa1354790:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - tig0014543:530686-530705 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - tig0014543:530730-530749 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - tig0014543:530847-530866 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + tig0014543:530868-530887 Msa1354790:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - tig0014543:530995-531014 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + tig0014543:531082-531101 Msa1354790:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + tig0014543:531112-531131 Msa1354790:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + tig0014543:531166-531185 Msa1354790:CDS 65.0%
GTTCTCTGCCCCTGCGGGGA+TGG - tig0014543:530138-530157 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - tig0014543:530315-530334 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + tig0014543:530582-530601 Msa1354790:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - tig0014543:530630-530649 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + tig0014543:530682-530701 Msa1354790:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + tig0014543:530830-530849 Msa1354790:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + tig0014543:531083-531102 Msa1354790:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - tig0014543:531093-531112 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - tig0014543:531096-531115 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + tig0014543:531096-531115 Msa1354790:CDS 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG - tig0014543:530138-530157 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - tig0014543:530315-530334 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + tig0014543:530582-530601 Msa1354790:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - tig0014543:530630-530649 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + tig0014543:530682-530701 Msa1354790:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + tig0014543:530830-530849 Msa1354790:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + tig0014543:531083-531102 Msa1354790:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - tig0014543:531093-531112 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - tig0014543:531096-531115 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + tig0014543:531096-531115 Msa1354790:CDS 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG + tig0014543:530834-530853 Msa1354790:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + tig0014543:531089-531108 Msa1354790:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - tig0014543:531103-531122 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - tig0014543:531154-531173 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - tig0014543:531158-531177 None:intergenic 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG + tig0014543:530834-530853 Msa1354790:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + tig0014543:531089-531108 Msa1354790:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - tig0014543:531103-531122 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - tig0014543:531154-531173 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - tig0014543:531158-531177 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + tig0014543:530837-530856 Msa1354790:intron 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + tig0014543:530837-530856 Msa1354790:intron 80.0%
Chromosome Type Strat End Strand Name
tig0014543 gene 529738 531223 529738 ID=Msa1354790;Name=Msa1354790
tig0014543 mRNA 529738 531223 529738 ID=Msa1354790-mRNA-1;Parent=Msa1354790;Name=Msa1354790-mRNA-1;_AED=0.47;_eAED=0.73;_QI=0|0|0|0.5|1|1|6|0|280
tig0014543 exon 529738 529794 529738 ID=Msa1354790-mRNA-1:exon:9211;Parent=Msa1354790-mRNA-1
tig0014543 exon 529913 529987 529913 ID=Msa1354790-mRNA-1:exon:9212;Parent=Msa1354790-mRNA-1
tig0014543 exon 530147 530225 530147 ID=Msa1354790-mRNA-1:exon:9213;Parent=Msa1354790-mRNA-1
tig0014543 exon 530347 530557 530347 ID=Msa1354790-mRNA-1:exon:9214;Parent=Msa1354790-mRNA-1
tig0014543 exon 530652 530796 530652 ID=Msa1354790-mRNA-1:exon:9215;Parent=Msa1354790-mRNA-1
tig0014543 exon 530948 531223 530948 ID=Msa1354790-mRNA-1:exon:9216;Parent=Msa1354790-mRNA-1
tig0014543 CDS 529738 529794 529738 ID=Msa1354790-mRNA-1:cds;Parent=Msa1354790-mRNA-1
tig0014543 CDS 529913 529987 529913 ID=Msa1354790-mRNA-1:cds;Parent=Msa1354790-mRNA-1
tig0014543 CDS 530147 530225 530147 ID=Msa1354790-mRNA-1:cds;Parent=Msa1354790-mRNA-1
tig0014543 CDS 530347 530557 530347 ID=Msa1354790-mRNA-1:cds;Parent=Msa1354790-mRNA-1
tig0014543 CDS 530652 530796 530652 ID=Msa1354790-mRNA-1:cds;Parent=Msa1354790-mRNA-1
tig0014543 CDS 530948 531223 530948 ID=Msa1354790-mRNA-1:cds;Parent=Msa1354790-mRNA-1
Gene Sequence

>Msa1354790

ATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA

Protein sequence

>Msa1354790

MDWCGSSTPRTPEYRTMNERFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*