AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1366030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1366030 MtrunA17_Chr4g0016151 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1366030 MtrunA17_CPg0492351 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1366030 MtrunA17_Chr7g0229411 98.780 82 1 0 199 280 1 82 3.39e-54 170
Msa1366030 MtrunA17_Chr4g0000631 98.780 82 1 0 199 280 1 82 3.50e-54 170
Msa1366030 MtrunA17_Chr5g0435911 97.561 82 2 0 199 280 1 82 1.38e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 122 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCATGGTTCGATATTC+TGG 0.185586 tig0018442:+153991 None:intergenic
TGCACGCCTCCGTTACCTTT+TGG 0.196515 tig0018442:-153050 Msa1366030:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 tig0018442:-153345 Msa1366030:CDS
TCATGCCTTTACTTCGTTCA+TGG 0.272664 tig0018442:+153978 None:intergenic
GGCTGTGATACCGGAGGCTC+TGG 0.279951 tig0018442:-153591 Msa1366030:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 tig0018442:+153015 None:intergenic
GCACGAAAGGCGTAACGATC+TGG 0.311741 tig0018442:+152751 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 tig0018442:-153396 Msa1366030:CDS
CAGAGAACCCATCGCTGTTT+CGG 0.333458 tig0018442:-153612 Msa1366030:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 tig0018442:+153079 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 tig0018442:-153251 Msa1366030:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 tig0018442:-152626 Msa1366030:CDS
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 tig0018442:-152666 Msa1366030:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 tig0018442:+152583 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 tig0018442:+153219 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 tig0018442:+153346 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 tig0018442:-153252 Msa1366030:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 tig0018442:-153344 Msa1366030:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 tig0018442:-152673 Msa1366030:CDS
CGCTGTTTCGGCTGTGATAC+CGG 0.403155 tig0018442:-153600 Msa1366030:CDS
AATAGGAGAGCACTCATCTT+GGG 0.408942 tig0018442:-153559 Msa1366030:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 tig0018442:+152617 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 tig0018442:-153103 Msa1366030:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 tig0018442:+153259 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 tig0018442:-152620 Msa1366030:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 tig0018442:+153314 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 tig0018442:-152681 Msa1366030:CDS
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 tig0018442:+152607 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 tig0018442:-152615 Msa1366030:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 tig0018442:-152680 Msa1366030:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 tig0018442:-153821 Msa1366030:CDS
CCACCAAGTTCGGGATGGAT+TGG 0.447763 tig0018442:-154038 None:intergenic
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 tig0018442:+153313 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 tig0018442:-152650 Msa1366030:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 tig0018442:+153383 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 tig0018442:+152999 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 tig0018442:+153372 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 tig0018442:+152662 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 tig0018442:-153102 Msa1366030:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 tig0018442:-152994 Msa1366030:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 tig0018442:+153250 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 tig0018442:-152580 Msa1366030:CDS
GTTCGATATTCTGGTGTCCT+AGG 0.478291 tig0018442:+154000 None:intergenic
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 tig0018442:+153581 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 tig0018442:-153087 Msa1366030:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 tig0018442:+152624 None:intergenic
GAATAGGAGAGCACTCATCT+TGG 0.487596 tig0018442:-153560 Msa1366030:CDS
ACAAGGAATTTCGCTACCTT+AGG 0.488888 tig0018442:-152711 Msa1366030:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 tig0018442:-153576 Msa1366030:CDS
CACGAAAGGCGTAACGATCT+GGG 0.491297 tig0018442:+152752 None:intergenic
GAAGTTGGTGACCTGATGAC+AGG 0.495416 tig0018442:+152639 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 tig0018442:+152715 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 tig0018442:-153796 Msa1366030:intron
TTCCTTAACCTTCCGGCACT+GGG 0.504342 tig0018442:-152619 Msa1366030:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 tig0018442:+152669 None:intergenic
CACTGTCTCGGAGAGAGGCT+CGG 0.506062 tig0018442:+152775 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 tig0018442:+153288 None:intergenic
GCTGTGATACCGGAGGCTCT+GGG 0.508804 tig0018442:-153590 Msa1366030:CDS
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 tig0018442:+153016 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 tig0018442:+153102 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 tig0018442:+152714 None:intergenic
TAACGATCTGGGCACTGTCT+CGG 0.513539 tig0018442:+152763 None:intergenic
ATGACCTGATCAATTCGATC+AGG 0.514268 tig0018442:+153792 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.516913 tig0018442:-152748 Msa1366030:CDS
TGACCTGATGACAGGGAAGC+CGG 0.518242 tig0018442:+152647 None:intergenic
CCTTAGGACCGTTATAGTTA+CGG 0.519214 tig0018442:-152695 Msa1366030:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 tig0018442:+153063 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 tig0018442:+153064 None:intergenic
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 tig0018442:-153250 Msa1366030:CDS
CCTTGGTCTGTACTGGCACA+AGG 0.538614 tig0018442:-152987 Msa1366030:intron
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 tig0018442:+153347 None:intergenic
CTGGGCACTGTCTCGGAGAG+AGG 0.542198 tig0018442:+152770 None:intergenic
AAGGTTTGGCACCTCGATGT+CGG 0.545826 tig0018442:+153273 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 tig0018442:-153325 Msa1366030:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 tig0018442:+153249 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 tig0018442:+152584 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 tig0018442:-153080 Msa1366030:CDS
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 tig0018442:+153308 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 tig0018442:+152672 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.565799 tig0018442:-152749 Msa1366030:CDS
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 tig0018442:-153582 Msa1366030:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 tig0018442:+152611 None:intergenic
TATCACAGCCGAAACAGCGA+TGG 0.574058 tig0018442:+153604 None:intergenic
CCGTAACTATAACGGTCCTA+AGG 0.574485 tig0018442:+152695 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 tig0018442:-153306 Msa1366030:CDS
TAAGTTCCGACCCGCACGAA+AGG 0.581321 tig0018442:+152738 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 tig0018442:-153004 Msa1366030:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 tig0018442:+153054 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 tig0018442:+153103 None:intergenic
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 tig0018442:+153072 None:intergenic
CTGTGATACCGGAGGCTCTG+GGG 0.598997 tig0018442:-153589 Msa1366030:CDS
AACGGCGGCCGTAACTATAA+CGG 0.599287 tig0018442:+152687 None:intergenic
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 tig0018442:-152744 Msa1366030:CDS
GGTGTGGTTCCTCTACGCCT+AGG 0.606362 tig0018442:-154017 Msa1366030:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 tig0018442:+153035 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 tig0018442:+153389 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 tig0018442:+153254 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 tig0018442:+153388 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 tig0018442:+153334 None:intergenic
ATCACAGCCGAAACAGCGAT+GGG 0.621115 tig0018442:+153605 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 tig0018442:+152585 None:intergenic
TTCTGGTGTCCTAGGCGTAG+AGG 0.622900 tig0018442:+154008 None:intergenic
AGACAGTTTCTATGGGGCGT+AGG 0.622986 tig0018442:+153023 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 tig0018442:-153558 Msa1366030:intron
AAGTTGGTGACCTGATGACA+GGG 0.627282 tig0018442:+152640 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 tig0018442:+153041 None:intergenic
AAGTTCGGGATGGATTGGTG+TGG 0.636372 tig0018442:-154033 None:intergenic
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 tig0018442:+153309 None:intergenic
TAGACATGTCTGTGAAGATG+CGG 0.645281 tig0018442:+152803 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 tig0018442:+152987 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 tig0018442:-152728 Msa1366030:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 tig0018442:-153402 Msa1366030:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 tig0018442:+153095 None:intergenic
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 tig0018442:+153044 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 tig0018442:+152586 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 tig0018442:+152988 None:intergenic
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 tig0018442:+153407 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 tig0018442:-153284 Msa1366030:CDS
TGTTTCGGCTGTGATACCGG+AGG 0.717886 tig0018442:-153597 Msa1366030:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 tig0018442:+153017 None:intergenic
GTTACGGCCGCCGTTCACCG+GGG 0.732311 tig0018442:-152679 Msa1366030:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 tig0018442:-153303 Msa1366030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTTGAACAATCAAAATAGA+TGG - tig0018442:152764-152783 Msa1366030:CDS 25.0%
! AGTTGAACAATCAAAATAGA+TGG - tig0018442:152764-152783 Msa1366030:CDS 25.0%
CACCTATCGTTAATGAAAAA+CGG - tig0018442:152888-152907 Msa1366030:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG + tig0018442:152929-152948 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG + tig0018442:153377-153396 None:intergenic 30.0%
CACCTATCGTTAATGAAAAA+CGG - tig0018442:152888-152907 Msa1366030:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG + tig0018442:152929-152948 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG + tig0018442:153377-153396 None:intergenic 30.0%
! CATATTGACTAGTCAATGTC+AGG - tig0018442:152638-152657 Msa1366030:CDS 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG + tig0018442:152893-152912 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG + tig0018442:153369-153388 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG + tig0018442:153378-153397 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG + tig0018442:154004-154023 None:intergenic 35.0%
! CATATTGACTAGTCAATGTC+AGG - tig0018442:152638-152657 Msa1366030:CDS 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG + tig0018442:152893-152912 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG + tig0018442:153369-153388 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG + tig0018442:153378-153397 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG + tig0018442:154004-154023 None:intergenic 35.0%
TCGTTCATGGTTCGATATTC+TGG + tig0018442:152597-152616 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG - tig0018442:152602-152621 Msa1366030:CDS 40.0%
TCATGCCTTTACTTCGTTCA+TGG + tig0018442:152610-152629 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG + tig0018442:152702-152721 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG - tig0018442:152702-152721 Msa1366030:CDS 40.0%
ATTGCCTGATCGAATTGATC+AGG - tig0018442:152789-152808 Msa1366030:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG + tig0018442:152796-152815 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG - tig0018442:152805-152824 Msa1366030:CDS 40.0%
AGAACAAGGTTCAAGTCTAC+CGG - tig0018442:152819-152838 Msa1366030:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG + tig0018442:152883-152902 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG + tig0018442:152923-152942 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG - tig0018442:153026-153045 Msa1366030:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG + tig0018442:153274-153293 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG - tig0018442:153383-153402 Msa1366030:CDS 40.0%
TCAGGTAGACAGTTTCTATG+GGG + tig0018442:153571-153590 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG + tig0018442:153572-153591 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG + tig0018442:153573-153592 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG + tig0018442:153785-153804 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG + tig0018442:153874-153893 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG - tig0018442:153874-153893 Msa1366030:intron 40.0%
CCTTAGGACCGTTATAGTTA+CGG - tig0018442:153890-153909 Msa1366030:intron 40.0%
AAGTCGTAAGACCATGTATG+GGG + tig0018442:154003-154022 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG + tig0018442:154005-154024 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG - tig0018442:154005-154024 Msa1366030:CDS 40.0%
TCGTTCATGGTTCGATATTC+TGG + tig0018442:152597-152616 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG - tig0018442:152602-152621 Msa1366030:CDS 40.0%
TCATGCCTTTACTTCGTTCA+TGG + tig0018442:152610-152629 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG + tig0018442:152702-152721 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG - tig0018442:152702-152721 Msa1366030:CDS 40.0%
ATTGCCTGATCGAATTGATC+AGG - tig0018442:152789-152808 Msa1366030:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG + tig0018442:152796-152815 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG - tig0018442:152805-152824 Msa1366030:CDS 40.0%
AGAACAAGGTTCAAGTCTAC+CGG - tig0018442:152819-152838 Msa1366030:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG + tig0018442:152883-152902 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG + tig0018442:152923-152942 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG - tig0018442:153026-153045 Msa1366030:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG + tig0018442:153274-153293 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG - tig0018442:153383-153402 Msa1366030:CDS 40.0%
TCAGGTAGACAGTTTCTATG+GGG + tig0018442:153571-153590 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG + tig0018442:153572-153591 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG + tig0018442:153573-153592 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG + tig0018442:153785-153804 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG + tig0018442:153874-153893 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG - tig0018442:153874-153893 Msa1366030:intron 40.0%
CCTTAGGACCGTTATAGTTA+CGG - tig0018442:153890-153909 Msa1366030:intron 40.0%
AAGTCGTAAGACCATGTATG+GGG + tig0018442:154003-154022 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG + tig0018442:154005-154024 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG - tig0018442:154005-154024 Msa1366030:CDS 40.0%
GTTCGATATTCTGGTGTCCT+AGG + tig0018442:152588-152607 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG - tig0018442:152655-152674 Msa1366030:CDS 45.0%
GTCCTAATTCTTGACTGGAG+AGG - tig0018442:152660-152679 Msa1366030:CDS 45.0%
GTCCTCTCCAGTCAAGAATT+AGG + tig0018442:152665-152684 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG + tig0018442:152703-152722 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG - tig0018442:152701-152720 Msa1366030:CDS 45.0%
ATCCCTTGAATAGCTAGGGA+TGG + tig0018442:152707-152726 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG - tig0018442:152706-152725 Msa1366030:CDS 45.0%
TCCCTAGCTATTCAAGGGAT+GGG - tig0018442:152707-152726 Msa1366030:CDS 45.0%
TTCAAGTCTACCGGTCTGTT+AGG - tig0018442:152828-152847 Msa1366030:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG + tig0018442:152857-152876 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG - tig0018442:153025-153044 Msa1366030:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG - tig0018442:153027-153046 Msa1366030:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG - tig0018442:153108-153127 Msa1366030:CDS 45.0%
ATTAAAGCGGTACGTGAGCT+GGG + tig0018442:153241-153260 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG - tig0018442:153241-153260 Msa1366030:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG + tig0018442:153275-153294 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG + tig0018442:153279-153298 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG + tig0018442:153280-153299 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG - tig0018442:153279-153298 Msa1366030:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG - tig0018442:153624-153643 Msa1366030:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG + tig0018442:153734-153753 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG + tig0018442:153735-153754 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG - tig0018442:153734-153753 Msa1366030:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG - tig0018442:153735-153754 Msa1366030:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG - tig0018442:153749-153768 Msa1366030:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG + tig0018442:153873-153892 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG + tig0018442:153893-153912 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG + tig0018442:153948-153967 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG - tig0018442:153959-153978 Msa1366030:intron 45.0%
AGTCGTAAGACCATGTATGG+GGG + tig0018442:154002-154021 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG - tig0018442:154021-154040 Msa1366030:CDS 45.0%
GTTCGATATTCTGGTGTCCT+AGG + tig0018442:152588-152607 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG - tig0018442:152655-152674 Msa1366030:CDS 45.0%
GTCCTAATTCTTGACTGGAG+AGG - tig0018442:152660-152679 Msa1366030:CDS 45.0%
GTCCTCTCCAGTCAAGAATT+AGG + tig0018442:152665-152684 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG + tig0018442:152703-152722 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG - tig0018442:152701-152720 Msa1366030:CDS 45.0%
ATCCCTTGAATAGCTAGGGA+TGG + tig0018442:152707-152726 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG - tig0018442:152706-152725 Msa1366030:CDS 45.0%
TCCCTAGCTATTCAAGGGAT+GGG - tig0018442:152707-152726 Msa1366030:CDS 45.0%
TTCAAGTCTACCGGTCTGTT+AGG - tig0018442:152828-152847 Msa1366030:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG + tig0018442:152857-152876 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG - tig0018442:153025-153044 Msa1366030:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG - tig0018442:153027-153046 Msa1366030:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG - tig0018442:153108-153127 Msa1366030:CDS 45.0%
ATTAAAGCGGTACGTGAGCT+GGG + tig0018442:153241-153260 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG - tig0018442:153241-153260 Msa1366030:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG + tig0018442:153275-153294 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG + tig0018442:153279-153298 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG + tig0018442:153280-153299 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG - tig0018442:153279-153298 Msa1366030:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG - tig0018442:153624-153643 Msa1366030:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG + tig0018442:153734-153753 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG + tig0018442:153735-153754 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG - tig0018442:153734-153753 Msa1366030:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG - tig0018442:153735-153754 Msa1366030:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG - tig0018442:153749-153768 Msa1366030:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG + tig0018442:153873-153892 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG + tig0018442:153893-153912 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG + tig0018442:153948-153967 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG - tig0018442:153959-153978 Msa1366030:intron 45.0%
AGTCGTAAGACCATGTATGG+GGG + tig0018442:154002-154021 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG - tig0018442:154021-154040 Msa1366030:CDS 45.0%
TTGACTGGAGAGGACACCAA+AGG - tig0018442:152670-152689 Msa1366030:CDS 50.0%
CCCCATCCCTTGAATAGCTA+GGG + tig0018442:152711-152730 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG - tig0018442:152708-152727 Msa1366030:CDS 50.0%
CCTAGCTATTCAAGGGATGG+GGG - tig0018442:152709-152728 Msa1366030:CDS 50.0%
CAGAGAACCCATCGCTGTTT+CGG - tig0018442:152973-152992 Msa1366030:intron 50.0%
ATCACAGCCGAAACAGCGAT+GGG + tig0018442:152983-153002 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG + tig0018442:152984-153003 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG + tig0018442:153115-153134 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG + tig0018442:153155-153174 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG + tig0018442:153205-153224 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG + tig0018442:153216-153235 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG + tig0018442:153242-153261 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG - tig0018442:153240-153259 Msa1366030:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG - tig0018442:153282-153301 Msa1366030:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG + tig0018442:153315-153334 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG + tig0018442:153547-153566 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG + tig0018442:153565-153584 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG + tig0018442:153600-153619 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG + tig0018442:153641-153660 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG - tig0018442:153638-153657 Msa1366030:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG + tig0018442:153686-153705 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG - tig0018442:153714-153733 Msa1366030:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG - tig0018442:153715-153734 Msa1366030:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG + tig0018442:153722-153741 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG + tig0018442:153825-153844 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG + tig0018442:153836-153855 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG - tig0018442:153836-153855 Msa1366030:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG + tig0018442:153901-153920 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG + tig0018442:153949-153968 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG + tig0018442:153964-153983 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG - tig0018442:153966-153985 Msa1366030:intron 50.0%
TTGACTGGAGAGGACACCAA+AGG - tig0018442:152670-152689 Msa1366030:CDS 50.0%
CCCCATCCCTTGAATAGCTA+GGG + tig0018442:152711-152730 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG - tig0018442:152708-152727 Msa1366030:CDS 50.0%
CCTAGCTATTCAAGGGATGG+GGG - tig0018442:152709-152728 Msa1366030:CDS 50.0%
CAGAGAACCCATCGCTGTTT+CGG - tig0018442:152973-152992 Msa1366030:intron 50.0%
ATCACAGCCGAAACAGCGAT+GGG + tig0018442:152983-153002 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG + tig0018442:152984-153003 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG + tig0018442:153115-153134 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG + tig0018442:153155-153174 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG + tig0018442:153205-153224 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG + tig0018442:153216-153235 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG + tig0018442:153242-153261 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG - tig0018442:153240-153259 Msa1366030:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG - tig0018442:153282-153301 Msa1366030:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG + tig0018442:153315-153334 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG + tig0018442:153547-153566 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG + tig0018442:153565-153584 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG + tig0018442:153600-153619 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG + tig0018442:153641-153660 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG - tig0018442:153638-153657 Msa1366030:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG + tig0018442:153686-153705 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG - tig0018442:153714-153733 Msa1366030:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG - tig0018442:153715-153734 Msa1366030:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG + tig0018442:153722-153741 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG + tig0018442:153825-153844 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG + tig0018442:153836-153855 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG - tig0018442:153836-153855 Msa1366030:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG + tig0018442:153901-153920 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG + tig0018442:153949-153968 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG + tig0018442:153964-153983 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG - tig0018442:153966-153985 Msa1366030:intron 50.0%
TTCTGGTGTCCTAGGCGTAG+AGG + tig0018442:152580-152599 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG + tig0018442:152712-152731 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG - tig0018442:152716-152735 Msa1366030:CDS 55.0%
! GCTGAGGCATCCTAACAGAC+CGG + tig0018442:152841-152860 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG - tig0018442:152948-152967 Msa1366030:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG - tig0018442:152949-152968 Msa1366030:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG - tig0018442:152985-153004 Msa1366030:intron 55.0%
TGTTTCGGCTGTGATACCGG+AGG - tig0018442:152988-153007 Msa1366030:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG - tig0018442:153031-153050 Msa1366030:CDS 55.0%
AAACGCTGGGTAGCCAAGTG+CGG + tig0018442:153091-153110 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG + tig0018442:153104-153123 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG + tig0018442:153105-153124 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG - tig0018442:153119-153138 Msa1366030:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG - tig0018442:153149-153168 Msa1366030:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG + tig0018442:153154-153173 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG - tig0018442:153154-153173 Msa1366030:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG + tig0018442:153160-153179 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG + tig0018442:153181-153200 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG - tig0018442:153183-153202 Msa1366030:intron 55.0%
TCTAACGCCCACACCGGATA+TGG - tig0018442:153189-153208 Msa1366030:intron 55.0%
GTTCGGTCCATATCCGGTGT+GGG + tig0018442:153199-153218 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG + tig0018442:153200-153219 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG + tig0018442:153254-153273 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG + tig0018442:153329-153348 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG + tig0018442:153334-153353 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG - tig0018442:153333-153352 Msa1366030:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG - tig0018442:153334-153353 Msa1366030:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG + tig0018442:153339-153358 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG + tig0018442:153424-153443 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG + tig0018442:153485-153504 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG - tig0018442:153483-153502 Msa1366030:intron 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG + tig0018442:153493-153512 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG + tig0018442:153516-153535 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG + tig0018442:153524-153543 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG + tig0018442:153525-153544 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG + tig0018442:153534-153553 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG - tig0018442:153535-153554 Msa1366030:intron 55.0%
! GCACGCCTCCGTTACCTTTT+GGG - tig0018442:153536-153555 Msa1366030:intron 55.0%
GTCTACCTGAGACTGTCCCT+TGG - tig0018442:153581-153600 Msa1366030:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG + tig0018442:153589-153608 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG - tig0018442:153591-153610 Msa1366030:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG + tig0018442:153601-153620 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG - tig0018442:153598-153617 Msa1366030:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG + tig0018442:153675-153694 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG + tig0018442:153699-153718 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG + tig0018442:153723-153742 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG + tig0018442:153729-153748 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG + tig0018442:153837-153856 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG - tig0018442:153837-153856 Msa1366030:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG + tig0018442:153850-153869 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG + tig0018442:153941-153960 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG - tig0018442:153965-153984 Msa1366030:intron 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG + tig0018442:152580-152599 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG + tig0018442:152712-152731 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG - tig0018442:152716-152735 Msa1366030:CDS 55.0%
! GCTGAGGCATCCTAACAGAC+CGG + tig0018442:152841-152860 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG - tig0018442:152948-152967 Msa1366030:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG - tig0018442:152949-152968 Msa1366030:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG - tig0018442:152985-153004 Msa1366030:intron 55.0%
TGTTTCGGCTGTGATACCGG+AGG - tig0018442:152988-153007 Msa1366030:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG - tig0018442:153031-153050 Msa1366030:CDS 55.0%
AAACGCTGGGTAGCCAAGTG+CGG + tig0018442:153091-153110 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG + tig0018442:153104-153123 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG + tig0018442:153105-153124 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG - tig0018442:153119-153138 Msa1366030:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG - tig0018442:153149-153168 Msa1366030:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG + tig0018442:153154-153173 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG - tig0018442:153154-153173 Msa1366030:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG + tig0018442:153160-153179 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG + tig0018442:153181-153200 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG - tig0018442:153183-153202 Msa1366030:intron 55.0%
TCTAACGCCCACACCGGATA+TGG - tig0018442:153189-153208 Msa1366030:intron 55.0%
GTTCGGTCCATATCCGGTGT+GGG + tig0018442:153199-153218 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG + tig0018442:153200-153219 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG + tig0018442:153254-153273 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG + tig0018442:153329-153348 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG + tig0018442:153334-153353 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG - tig0018442:153333-153352 Msa1366030:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG - tig0018442:153334-153353 Msa1366030:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG + tig0018442:153339-153358 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG + tig0018442:153424-153443 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG + tig0018442:153485-153504 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG - tig0018442:153483-153502 Msa1366030:intron 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG + tig0018442:153493-153512 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG + tig0018442:153516-153535 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG + tig0018442:153524-153543 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG + tig0018442:153525-153544 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG + tig0018442:153534-153553 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG - tig0018442:153535-153554 Msa1366030:intron 55.0%
! GCACGCCTCCGTTACCTTTT+GGG - tig0018442:153536-153555 Msa1366030:intron 55.0%
GTCTACCTGAGACTGTCCCT+TGG - tig0018442:153581-153600 Msa1366030:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG + tig0018442:153589-153608 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG - tig0018442:153591-153610 Msa1366030:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG + tig0018442:153601-153620 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG - tig0018442:153598-153617 Msa1366030:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG + tig0018442:153675-153694 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG + tig0018442:153699-153718 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG + tig0018442:153723-153742 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG + tig0018442:153729-153748 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG + tig0018442:153837-153856 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG - tig0018442:153837-153856 Msa1366030:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG + tig0018442:153850-153869 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG + tig0018442:153941-153960 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG - tig0018442:153965-153984 Msa1366030:intron 55.0%
GGTGTGGTTCCTCTACGCCT+AGG - tig0018442:152568-152587 Msa1366030:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG + tig0018442:152689-152708 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG + tig0018442:152696-152715 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG - tig0018442:152722-152741 Msa1366030:CDS 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG - tig0018442:152950-152969 Msa1366030:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG - tig0018442:152995-153014 Msa1366030:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG - tig0018442:152996-153015 Msa1366030:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG - tig0018442:153009-153028 Msa1366030:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG - tig0018442:153030-153049 Msa1366030:CDS 60.0%
GCAGTTATCCGCTCCGCACT+TGG - tig0018442:153075-153094 Msa1366030:CDS 60.0%
GGCTACCCAGCGTTTACCGT+TGG - tig0018442:153096-153115 Msa1366030:CDS 60.0%
CTAGTACGAGAGGACCGGGA+AGG + tig0018442:153150-153169 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG - tig0018442:153148-153167 Msa1366030:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG + tig0018442:153338-153357 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG - tig0018442:153335-153354 Msa1366030:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG - tig0018442:153415-153434 Msa1366030:CDS 60.0%
CGTCGAGCAGGGACGAAAGT+CGG + tig0018442:153441-153460 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG - tig0018442:153439-153458 Msa1366030:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG - tig0018442:153440-153459 Msa1366030:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG - tig0018442:153482-153501 Msa1366030:intron 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG + tig0018442:153486-153505 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG - tig0018442:153539-153558 Msa1366030:intron 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG + tig0018442:153544-153563 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG + tig0018442:153671-153690 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG + tig0018442:153672-153691 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG + tig0018442:153673-153692 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG + tig0018442:153674-153693 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG + tig0018442:153695-153714 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG + tig0018442:153702-153721 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG - tig0018442:153755-153774 Msa1366030:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG + tig0018442:153770-153789 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG + tig0018442:153813-153832 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG - tig0018442:153841-153860 Msa1366030:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG - tig0018442:153857-153876 Msa1366030:intron 60.0%
TAGTTACGGCCGCCGTTCAC+CGG - tig0018442:153904-153923 Msa1366030:intron 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG + tig0018442:153971-153990 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG - tig0018442:153970-153989 Msa1366030:intron 60.0%
GGTGTGGTTCCTCTACGCCT+AGG - tig0018442:152568-152587 Msa1366030:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG + tig0018442:152689-152708 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG + tig0018442:152696-152715 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG - tig0018442:152722-152741 Msa1366030:CDS 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG - tig0018442:152950-152969 Msa1366030:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG - tig0018442:152995-153014 Msa1366030:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG - tig0018442:152996-153015 Msa1366030:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG - tig0018442:153009-153028 Msa1366030:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG - tig0018442:153030-153049 Msa1366030:CDS 60.0%
GCAGTTATCCGCTCCGCACT+TGG - tig0018442:153075-153094 Msa1366030:CDS 60.0%
GGCTACCCAGCGTTTACCGT+TGG - tig0018442:153096-153115 Msa1366030:CDS 60.0%
CTAGTACGAGAGGACCGGGA+AGG + tig0018442:153150-153169 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG - tig0018442:153148-153167 Msa1366030:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG + tig0018442:153338-153357 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG - tig0018442:153335-153354 Msa1366030:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG - tig0018442:153415-153434 Msa1366030:CDS 60.0%
CGTCGAGCAGGGACGAAAGT+CGG + tig0018442:153441-153460 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG - tig0018442:153439-153458 Msa1366030:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG - tig0018442:153440-153459 Msa1366030:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG - tig0018442:153482-153501 Msa1366030:intron 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG + tig0018442:153486-153505 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG - tig0018442:153539-153558 Msa1366030:intron 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG + tig0018442:153544-153563 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG + tig0018442:153671-153690 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG + tig0018442:153672-153691 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG + tig0018442:153673-153692 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG + tig0018442:153674-153693 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG + tig0018442:153695-153714 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG + tig0018442:153702-153721 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG - tig0018442:153755-153774 Msa1366030:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG + tig0018442:153770-153789 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG + tig0018442:153813-153832 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG - tig0018442:153841-153860 Msa1366030:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG - tig0018442:153857-153876 Msa1366030:intron 60.0%
TAGTTACGGCCGCCGTTCAC+CGG - tig0018442:153904-153923 Msa1366030:intron 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG + tig0018442:153971-153990 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG - tig0018442:153970-153989 Msa1366030:intron 60.0%
ATGGGTTCTCTGCCCCTGCG+GGG + tig0018442:152965-152984 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG + tig0018442:152966-152985 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG + tig0018442:152967-152986 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG - tig0018442:152994-153013 Msa1366030:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG - tig0018442:153003-153022 Msa1366030:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG + tig0018442:153007-153026 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG + tig0018442:153086-153105 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG - tig0018442:153133-153152 Msa1366030:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG - tig0018442:153260-153279 Msa1366030:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG + tig0018442:153300-153319 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG - tig0018442:153301-153320 Msa1366030:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG + tig0018442:153395-153414 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG - tig0018442:153396-153415 Msa1366030:CDS 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG + tig0018442:153409-153428 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG + tig0018442:153410-153429 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG + tig0018442:153414-153433 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG - tig0018442:153443-153462 Msa1366030:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG - tig0018442:153444-153463 Msa1366030:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG + tig0018442:153452-153471 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG - tig0018442:153498-153517 Msa1366030:intron 65.0%
TCCTCGGGCCAGACGGAGAT+TGG + tig0018442:153509-153528 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG + tig0018442:153553-153572 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG + tig0018442:153670-153689 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG - tig0018442:153691-153710 Msa1366030:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG + tig0018442:153818-153837 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG - tig0018442:153905-153924 Msa1366030:intron 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG - tig0018442:153935-153954 Msa1366030:intron 65.0%
CAGGCGTCAGCCCCCATACA+TGG - tig0018442:153989-154008 Msa1366030:intron 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG + tig0018442:152965-152984 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG + tig0018442:152966-152985 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG + tig0018442:152967-152986 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG - tig0018442:152994-153013 Msa1366030:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG - tig0018442:153003-153022 Msa1366030:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG + tig0018442:153007-153026 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG + tig0018442:153086-153105 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG - tig0018442:153133-153152 Msa1366030:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG - tig0018442:153260-153279 Msa1366030:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG + tig0018442:153300-153319 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG - tig0018442:153301-153320 Msa1366030:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG + tig0018442:153395-153414 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG - tig0018442:153396-153415 Msa1366030:CDS 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG + tig0018442:153409-153428 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG + tig0018442:153410-153429 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG + tig0018442:153414-153433 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG - tig0018442:153443-153462 Msa1366030:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG - tig0018442:153444-153463 Msa1366030:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG + tig0018442:153452-153471 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG - tig0018442:153498-153517 Msa1366030:intron 65.0%
TCCTCGGGCCAGACGGAGAT+TGG + tig0018442:153509-153528 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG + tig0018442:153553-153572 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG + tig0018442:153670-153689 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG - tig0018442:153691-153710 Msa1366030:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG + tig0018442:153818-153837 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG - tig0018442:153905-153924 Msa1366030:intron 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG - tig0018442:153935-153954 Msa1366030:intron 65.0%
CAGGCGTCAGCCCCCATACA+TGG - tig0018442:153989-154008 Msa1366030:intron 65.0%
GTTCTCTGCCCCTGCGGGGA+TGG + tig0018442:152961-152980 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG + tig0018442:153138-153157 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG - tig0018442:153405-153424 Msa1366030:CDS 70.0%
GCAAGACCCACCCGTCGAGC+AGG + tig0018442:153453-153472 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG - tig0018442:153505-153524 Msa1366030:intron 70.0%
ACTGATGGCTCGAGCCCCCC+CGG - tig0018442:153653-153672 Msa1366030:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG - tig0018442:153906-153925 Msa1366030:intron 70.0%
ACCGAAGCCCCGGTGAACGG+CGG + tig0018442:153916-153935 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG + tig0018442:153919-153938 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG - tig0018442:153919-153938 Msa1366030:intron 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG + tig0018442:152961-152980 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG + tig0018442:153138-153157 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG - tig0018442:153405-153424 Msa1366030:CDS 70.0%
GCAAGACCCACCCGTCGAGC+AGG + tig0018442:153453-153472 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG - tig0018442:153505-153524 Msa1366030:intron 70.0%
ACTGATGGCTCGAGCCCCCC+CGG - tig0018442:153653-153672 Msa1366030:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG - tig0018442:153906-153925 Msa1366030:intron 70.0%
ACCGAAGCCCCGGTGAACGG+CGG + tig0018442:153916-153935 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG + tig0018442:153919-153938 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG - tig0018442:153919-153938 Msa1366030:intron 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG - tig0018442:153657-153676 Msa1366030:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG - tig0018442:153912-153931 Msa1366030:intron 75.0%
GAAGCCGGCGACCGAAGCCC+CGG + tig0018442:153926-153945 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG + tig0018442:153977-153996 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG + tig0018442:153981-154000 None:intergenic 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG - tig0018442:153657-153676 Msa1366030:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG - tig0018442:153912-153931 Msa1366030:intron 75.0%
GAAGCCGGCGACCGAAGCCC+CGG + tig0018442:153926-153945 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG + tig0018442:153977-153996 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG + tig0018442:153981-154000 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG - tig0018442:153660-153679 Msa1366030:intron 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG - tig0018442:153660-153679 Msa1366030:intron 80.0%
Chromosome Type Strat End Strand Name
tig0018442 gene 152561 154046 152561 ID=Msa1366030;Name=Msa1366030
tig0018442 mRNA 152561 154046 152561 ID=Msa1366030-mRNA-1;Parent=Msa1366030;Name=Msa1366030-mRNA-1;_AED=0.47;_eAED=0.48;_QI=0|0|0|0.5|1|1|6|0|280
tig0018442 exon 153990 154046 153990 ID=Msa1366030-mRNA-1:exon:14943;Parent=Msa1366030-mRNA-1
tig0018442 exon 153797 153871 153797 ID=Msa1366030-mRNA-1:exon:14942;Parent=Msa1366030-mRNA-1
tig0018442 exon 153559 153637 153559 ID=Msa1366030-mRNA-1:exon:14941;Parent=Msa1366030-mRNA-1
tig0018442 exon 153227 153437 153227 ID=Msa1366030-mRNA-1:exon:14940;Parent=Msa1366030-mRNA-1
tig0018442 exon 152988 153132 152988 ID=Msa1366030-mRNA-1:exon:14939;Parent=Msa1366030-mRNA-1
tig0018442 exon 152561 152836 152561 ID=Msa1366030-mRNA-1:exon:14938;Parent=Msa1366030-mRNA-1
tig0018442 CDS 153990 154046 153990 ID=Msa1366030-mRNA-1:cds;Parent=Msa1366030-mRNA-1
tig0018442 CDS 153797 153871 153797 ID=Msa1366030-mRNA-1:cds;Parent=Msa1366030-mRNA-1
tig0018442 CDS 153559 153637 153559 ID=Msa1366030-mRNA-1:cds;Parent=Msa1366030-mRNA-1
tig0018442 CDS 153227 153437 153227 ID=Msa1366030-mRNA-1:cds;Parent=Msa1366030-mRNA-1
tig0018442 CDS 152988 153132 152988 ID=Msa1366030-mRNA-1:cds;Parent=Msa1366030-mRNA-1
tig0018442 CDS 152561 152836 152561 ID=Msa1366030-mRNA-1:cds;Parent=Msa1366030-mRNA-1
Gene Sequence

>Msa1366030

ATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA

Protein sequence

>Msa1366030

MDWCGSSTPRTPEYRTMNERFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*