Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0753790 | XP_039689975.1 | 62.857 | 70 | 16 | 2 | 14 | 80 | 106 | 168 | 8.28e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0753790 | A0A0B2RB12 | 39.850 | 133 | 21 | 2 | 2 | 75 | 176 | 308 | 7.09e-15 | 78.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006390 | Msa0753790 | 0.817122 | 3.884955e-52 | -8.615850e-47 |
| Msa0017510 | Msa0753790 | 0.817828 | 2.692996e-52 | -8.615850e-47 |
| Msa0037700 | Msa0753790 | 0.800675 | 1.289761e-48 | -8.615850e-47 |
| Msa0040450 | Msa0753790 | 0.821161 | 4.677876e-53 | -8.615850e-47 |
| Msa0110970 | Msa0753790 | 0.813422 | 2.580835e-51 | -8.615850e-47 |
| Msa0116770 | Msa0753790 | 0.811659 | 6.268026e-51 | -8.615850e-47 |
| Msa0621590 | Msa0753790 | 0.800573 | 1.352670e-48 | -8.615850e-47 |
| Msa0638280 | Msa0753790 | 0.802502 | 5.441605e-49 | -8.615850e-47 |
| Msa0682550 | Msa0753790 | 0.800239 | 1.582112e-48 | -8.615850e-47 |
| Msa0696450 | Msa0753790 | 0.824864 | 6.407685e-54 | -8.615850e-47 |
| Msa0753790 | Msa0804230 | 0.802814 | 4.692737e-49 | -8.615850e-47 |
| Msa0753790 | Msa0850960 | 0.836737 | 7.850517e-57 | -8.615850e-47 |
| Msa0753790 | Msa0857640 | 0.800843 | 1.191609e-48 | -8.615850e-47 |
| Msa0753790 | Msa0880140 | 0.814207 | 1.732806e-51 | -8.615850e-47 |
| Msa0753790 | Msa0922410 | 0.811465 | 6.908077e-51 | -8.615850e-47 |
| Msa0753790 | Msa0932780 | -0.815293 | 9.959187e-52 | -8.615850e-47 |
| Msa0753790 | Msa1014540 | 0.803308 | 3.709535e-49 | -8.615850e-47 |
| Msa0753790 | Msa1027290 | 0.808935 | 2.424685e-50 | -8.615850e-47 |
| Msa0753790 | Msa1052830 | 0.820854 | 5.505157e-53 | -8.615850e-47 |
| Msa0753790 | Msa1082500 | 0.817621 | 2.999217e-52 | -8.615850e-47 |
| Msa0753790 | Msa1111700 | 0.808863 | 2.512851e-50 | -8.615850e-47 |
| Msa0753790 | Msa1131220 | 0.800010 | 1.761585e-48 | -8.615850e-47 |
| Msa0753790 | Msa1168160 | 0.805795 | 1.123141e-49 | -8.615850e-47 |
| Msa0753790 | Msa1172400 | 0.802971 | 4.354212e-49 | -8.615850e-47 |
| Msa0753790 | Msa1193290 | 0.803662 | 3.131905e-49 | -8.615850e-47 |
| Msa0753790 | Msa1199220 | 0.844215 | 8.680433e-59 | -8.615850e-47 |
| Msa0753790 | Msa1238930 | 0.800252 | 1.572707e-48 | -8.615850e-47 |
| Msa0753790 | Msa1240180 | 0.814146 | 1.787502e-51 | -8.615850e-47 |
| Msa0753790 | Msa1242220 | 0.801153 | 1.029976e-48 | -8.615850e-47 |
| Msa0753790 | Msa1242240 | 0.806972 | 6.345741e-50 | -8.615850e-47 |
| Msa0753790 | Msa1320620 | 0.813593 | 2.366720e-51 | -8.615850e-47 |
| Msa0753790 | Msa1429150 | 0.819264 | 1.272348e-52 | -8.615850e-47 |
| Msa0753790 | Msa1438970 | 0.804448 | 2.150194e-49 | -8.615850e-47 |
| Msa0753790 | Msa1443290 | -0.806857 | 6.708538e-50 | -8.615850e-47 |
| Msa0753790 | Msa1445080 | 0.801847 | 7.424022e-49 | -8.615850e-47 |
| Msa0157290 | Msa0753790 | 0.818185 | 2.236628e-52 | -8.615850e-47 |
| Msa0165220 | Msa0753790 | 0.811182 | 7.957754e-51 | -8.615850e-47 |
| Msa0173990 | Msa0753790 | 0.810082 | 1.375758e-50 | -8.615850e-47 |
| Msa0197660 | Msa0753790 | 0.845386 | 4.196131e-59 | -8.615850e-47 |
| Msa0220580 | Msa0753790 | 0.810287 | 1.242236e-50 | -8.615850e-47 |
| Msa0239800 | Msa0753790 | 0.838122 | 3.469640e-57 | -8.615850e-47 |
| Msa0258760 | Msa0753790 | 0.834075 | 3.695696e-56 | -8.615850e-47 |
| Msa0270220 | Msa0753790 | -0.800475 | 1.416528e-48 | -8.615850e-47 |
| Msa0277820 | Msa0753790 | 0.828346 | 9.463852e-55 | -8.615850e-47 |
| Msa0307830 | Msa0753790 | -0.811823 | 5.772267e-51 | -8.615850e-47 |
| Msa0317510 | Msa0753790 | 0.842486 | 2.510421e-58 | -8.615850e-47 |
| Msa0323610 | Msa0753790 | 0.818552 | 1.846889e-52 | -8.615850e-47 |
| Msa0344830 | Msa0753790 | 0.803959 | 2.718026e-49 | -8.615850e-47 |
| Msa0347360 | Msa0753790 | 0.812107 | 5.007996e-51 | -8.615850e-47 |
| Msa0362780 | Msa0753790 | 0.814354 | 1.607749e-51 | -8.615850e-47 |
| Msa0484780 | Msa0753790 | 0.816544 | 5.234530e-52 | -8.615850e-47 |
| Msa0495320 | Msa0753790 | 0.801109 | 1.051600e-48 | -8.615850e-47 |
| Msa0534440 | Msa0753790 | 0.806161 | 9.410431e-50 | -8.615850e-47 |
| Msa0578040 | Msa0753790 | 0.809790 | 1.589695e-50 | -8.615850e-47 |
| Msa0599890 | Msa0753790 | 0.803208 | 3.889843e-49 | -8.615850e-47 |
| Msa0601850 | Msa0753790 | 0.801170 | 1.021597e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0753790 | MtrunA17_Chr8g0375221 | 91.667 | 36 | 3 | 0 | 35 | 70 | 317 | 352 | 9.96e-17 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0753790 | AT2G02148.2 | 82.353 | 34 | 6 | 0 | 2 | 35 | 179 | 212 | 3.94e-11 | 57.4 |
| Msa0753790 | AT2G02148.5 | 82.353 | 34 | 6 | 0 | 2 | 35 | 179 | 212 | 4.72e-11 | 57.0 |
| Msa0753790 | AT2G02148.4 | 82.353 | 34 | 6 | 0 | 2 | 35 | 179 | 212 | 4.72e-11 | 57.0 |
| Msa0753790 | AT2G02148.1 | 82.353 | 34 | 6 | 0 | 2 | 35 | 179 | 212 | 4.72e-11 | 57.0 |
| Msa0753790 | AT2G02148.3 | 82.353 | 34 | 6 | 0 | 2 | 35 | 179 | 212 | 4.72e-11 | 57.0 |
Find 17 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATGATGTTGCCTCATTT+TGG | 0.197106 | 5_2:+7397932 | Msa0753790:CDS |
| ATCATGCTTAAAGGGATATC+TGG | 0.221086 | 5_2:-7397917 | None:intergenic |
| AAAGGGATATCTGGGAAATT+TGG | 0.243233 | 5_2:-7397908 | None:intergenic |
| TGAGGCAACATCATGCTTAA+AGG | 0.260855 | 5_2:-7397926 | None:intergenic |
| ATTATGCTTGCTTCGTTGAA+TGG | 0.390277 | 5_2:+7396667 | Msa0753790:exon |
| GAGGCAACATCATGCTTAAA+GGG | 0.411665 | 5_2:-7397925 | None:intergenic |
| ATGCAGGTGGTTTGCATAGA+GGG | 0.485307 | 5_2:+7396725 | Msa0753790:CDS |
| ACGAGAGAGATTCGGTATGA+AGG | 0.490408 | 5_2:+7396619 | Msa0753790:five_prime_UTR |
| AGAGGAGGACGAGAGAGATT+CGG | 0.496065 | 5_2:+7396611 | None:intergenic |
| CCACGCCTATGCTTGTGTCT+TGG | 0.506145 | 5_2:-7397869 | None:intergenic |
| TCATGCTTAAAGGGATATCT+GGG | 0.515190 | 5_2:-7397916 | None:intergenic |
| GATGCAGGTGGTTTGCATAG+AGG | 0.539542 | 5_2:+7396724 | Msa0753790:CDS |
| CGTGTTGCTCTTGAAGATGC+AGG | 0.579378 | 5_2:+7396709 | Msa0753790:CDS |
| CCAAGACACAAGCATAGGCG+TGG | 0.662445 | 5_2:+7397869 | Msa0753790:CDS |
| ACTCTCCAAGACACAAGCAT+AGG | 0.666512 | 5_2:+7397864 | Msa0753790:CDS |
| GTTGCTCTTGAAGATGCAGG+TGG | 0.672716 | 5_2:+7396712 | Msa0753790:CDS |
| CTGCATCTTCAAGAGCAACA+CGG | 0.678512 | 5_2:-7396708 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAATGTTTTATTGCTTT+AGG | + | chr5_2:7396857-7396876 | Msa0753790:intron | 15.0% |
| !!! | TTTAATGTTTTATTGCTTTA+GGG | + | chr5_2:7396858-7396877 | Msa0753790:intron | 15.0% |
| !!! | CATTTAATTTAATGTATTCT+AGG | + | chr5_2:7396908-7396927 | Msa0753790:intron | 15.0% |
| !! | GATCAAATTAAAAATAAACA+CGG | - | chr5_2:7397126-7397145 | None:intergenic | 15.0% |
| !! | AAAATTCAAACATAATAAAG+AGG | - | chr5_2:7397423-7397442 | None:intergenic | 15.0% |
| !!! | TTTATTATGTTTGAATTTTG+TGG | + | chr5_2:7397424-7397443 | Msa0753790:intron | 15.0% |
| !! | CATAAAAATTCAAACAAAAA+AGG | - | chr5_2:7397451-7397470 | None:intergenic | 15.0% |
| !!! | ATTATTGTGTCAATTTTAAT+TGG | + | chr5_2:7397592-7397611 | Msa0753790:intron | 15.0% |
| !! | TTCATTAAAATGTAACAAAA+GGG | - | chr5_2:7397654-7397673 | None:intergenic | 15.0% |
| !!! | ATTTAATGTTTTATTGCTTT+AGG | + | chr5_2:7396857-7396876 | Msa0753790:intron | 15.0% |
| !!! | TTTAATGTTTTATTGCTTTA+GGG | + | chr5_2:7396858-7396877 | Msa0753790:intron | 15.0% |
| !!! | CATTTAATTTAATGTATTCT+AGG | + | chr5_2:7396908-7396927 | Msa0753790:intron | 15.0% |
| !! | GATCAAATTAAAAATAAACA+CGG | - | chr5_2:7397126-7397145 | None:intergenic | 15.0% |
| !! | AAAATTCAAACATAATAAAG+AGG | - | chr5_2:7397423-7397442 | None:intergenic | 15.0% |
| !!! | TTTATTATGTTTGAATTTTG+TGG | + | chr5_2:7397424-7397443 | Msa0753790:intron | 15.0% |
| !! | CATAAAAATTCAAACAAAAA+AGG | - | chr5_2:7397451-7397470 | None:intergenic | 15.0% |
| !!! | ATTATTGTGTCAATTTTAAT+TGG | + | chr5_2:7397592-7397611 | Msa0753790:intron | 15.0% |
| !! | TTCATTAAAATGTAACAAAA+GGG | - | chr5_2:7397654-7397673 | None:intergenic | 15.0% |
| !! | ACAAAGAAATTTCCTAAAAA+AGG | + | chr5_2:7396751-7396770 | Msa0753790:CDS | 20.0% |
| !!! | ATATAAAAAGGACCTTTTTT+AGG | - | chr5_2:7396766-7396785 | None:intergenic | 20.0% |
| !! | AATCTGCATTGAATATAAAA+AGG | - | chr5_2:7396778-7396797 | None:intergenic | 20.0% |
| !!! | TGTTTTTAGAGATTGAAAAT+TGG | + | chr5_2:7397469-7397488 | Msa0753790:intron | 20.0% |
| !! | CTTCATTAAAATGTAACAAA+AGG | - | chr5_2:7397655-7397674 | None:intergenic | 20.0% |
| !!! | CTTTTGTTACATTTTAATGA+AGG | + | chr5_2:7397653-7397672 | Msa0753790:intron | 20.0% |
| !! | AATGAGTGTAATAACAAAAT+CGG | + | chr5_2:7397697-7397716 | Msa0753790:intron | 20.0% |
| !! | ACAAAGAAATTTCCTAAAAA+AGG | + | chr5_2:7396751-7396770 | Msa0753790:CDS | 20.0% |
| !!! | ATATAAAAAGGACCTTTTTT+AGG | - | chr5_2:7396766-7396785 | None:intergenic | 20.0% |
| !! | AATCTGCATTGAATATAAAA+AGG | - | chr5_2:7396778-7396797 | None:intergenic | 20.0% |
| !!! | TGTTTTTAGAGATTGAAAAT+TGG | + | chr5_2:7397469-7397488 | Msa0753790:intron | 20.0% |
| !! | CTTCATTAAAATGTAACAAA+AGG | - | chr5_2:7397655-7397674 | None:intergenic | 20.0% |
| !!! | CTTTTGTTACATTTTAATGA+AGG | + | chr5_2:7397653-7397672 | Msa0753790:intron | 20.0% |
| !! | AATGAGTGTAATAACAAAAT+CGG | + | chr5_2:7397697-7397716 | Msa0753790:intron | 20.0% |
| ! | TCTTATTGTATAACTAGTTC+TGG | - | chr5_2:7397007-7397026 | None:intergenic | 25.0% |
| ! | AAAATTTGCCAATGAAAACA+GGG | - | chr5_2:7397224-7397243 | None:intergenic | 25.0% |
| ! | AAAAATTTGCCAATGAAAAC+AGG | - | chr5_2:7397225-7397244 | None:intergenic | 25.0% |
| ! | TTCAAACATAATAAAGAGGA+AGG | - | chr5_2:7397419-7397438 | None:intergenic | 25.0% |
| ! | AATAACAAAATCGGTTATGA+TGG | + | chr5_2:7397706-7397725 | Msa0753790:intron | 25.0% |
| ! | ATAACAAAATCGGTTATGAT+GGG | + | chr5_2:7397707-7397726 | Msa0753790:intron | 25.0% |
| !! | CATTTCATTTGAAATTTGCA+AGG | + | chr5_2:7397742-7397761 | Msa0753790:intron | 25.0% |
| !!! | CTTGCTTTGTTTTTGTTTAT+AGG | + | chr5_2:7397783-7397802 | Msa0753790:intron | 25.0% |
| ! | TATAGGTTTAAAAGATTGAC+AGG | + | chr5_2:7397800-7397819 | Msa0753790:intron | 25.0% |
| ! | TCTTATTGTATAACTAGTTC+TGG | - | chr5_2:7397007-7397026 | None:intergenic | 25.0% |
| ! | AAAATTTGCCAATGAAAACA+GGG | - | chr5_2:7397224-7397243 | None:intergenic | 25.0% |
| ! | AAAAATTTGCCAATGAAAAC+AGG | - | chr5_2:7397225-7397244 | None:intergenic | 25.0% |
| ! | TTCAAACATAATAAAGAGGA+AGG | - | chr5_2:7397419-7397438 | None:intergenic | 25.0% |
| ! | AATAACAAAATCGGTTATGA+TGG | + | chr5_2:7397706-7397725 | Msa0753790:intron | 25.0% |
| ! | ATAACAAAATCGGTTATGAT+GGG | + | chr5_2:7397707-7397726 | Msa0753790:intron | 25.0% |
| !! | CATTTCATTTGAAATTTGCA+AGG | + | chr5_2:7397742-7397761 | Msa0753790:intron | 25.0% |
| !!! | CTTGCTTTGTTTTTGTTTAT+AGG | + | chr5_2:7397783-7397802 | Msa0753790:intron | 25.0% |
| ! | TATAGGTTTAAAAGATTGAC+AGG | + | chr5_2:7397800-7397819 | Msa0753790:intron | 25.0% |
| !! | TGCTTTTAGCTATATAGTGT+TGG | + | chr5_2:7396808-7396827 | Msa0753790:intron | 30.0% |
| AGGGTCATATGATGTATTAT+TGG | + | chr5_2:7396877-7396896 | Msa0753790:intron | 30.0% | |
| TATTATTTCCTAAGCTCTGT+AGG | + | chr5_2:7397329-7397348 | Msa0753790:intron | 30.0% | |
| ! | ATCTATTTTCTATAGCTCAG+TGG | + | chr5_2:7397384-7397403 | Msa0753790:intron | 30.0% |
| GATTGAAAATTGGTACTATG+CGG | + | chr5_2:7397479-7397498 | Msa0753790:intron | 30.0% | |
| AAAATGTAACAAAAGGGAAC+AGG | - | chr5_2:7397648-7397667 | None:intergenic | 30.0% | |
| !! | TGCTTTTAGCTATATAGTGT+TGG | + | chr5_2:7396808-7396827 | Msa0753790:intron | 30.0% |
| AGGGTCATATGATGTATTAT+TGG | + | chr5_2:7396877-7396896 | Msa0753790:intron | 30.0% | |
| TATTATTTCCTAAGCTCTGT+AGG | + | chr5_2:7397329-7397348 | Msa0753790:intron | 30.0% | |
| ! | ATCTATTTTCTATAGCTCAG+TGG | + | chr5_2:7397384-7397403 | Msa0753790:intron | 30.0% |
| GATTGAAAATTGGTACTATG+CGG | + | chr5_2:7397479-7397498 | Msa0753790:intron | 30.0% | |
| AAAATGTAACAAAAGGGAAC+AGG | - | chr5_2:7397648-7397667 | None:intergenic | 30.0% | |
| ATTATGCTTGCTTCGTTGAA+TGG | + | chr5_2:7396667-7396686 | Msa0753790:exon | 35.0% | |
| ! | TAGCTATATAGTGTTGGAAG+TGG | + | chr5_2:7396814-7396833 | Msa0753790:intron | 35.0% |
| ATATGTACATAGTCATGTCG+AGG | - | chr5_2:7396939-7396958 | None:intergenic | 35.0% | |
| GTTCGCTTTGTGGTAATTAA+TGG | + | chr5_2:7397034-7397053 | Msa0753790:intron | 35.0% | |
| ! | AAGCCTTTTCCCATTAAGTT+GGG | - | chr5_2:7397160-7397179 | None:intergenic | 35.0% |
| TTTGAGCTGAAGATCTGTTA+TGG | + | chr5_2:7397271-7397290 | Msa0753790:intron | 35.0% | |
| ! | GTATTCTATCTGTAGTTCTG+TGG | + | chr5_2:7397531-7397550 | Msa0753790:intron | 35.0% |
| AAACAAAGCAAGTGAGACTA+AGG | - | chr5_2:7397775-7397794 | None:intergenic | 35.0% | |
| GGTTTAAAAGATTGACAGGT+TGG | + | chr5_2:7397804-7397823 | Msa0753790:intron | 35.0% | |
| AAAGGGATATCTGGGAAATT+TGG | - | chr5_2:7397911-7397930 | None:intergenic | 35.0% | |
| TCATGCTTAAAGGGATATCT+GGG | - | chr5_2:7397919-7397938 | None:intergenic | 35.0% | |
| ATCATGCTTAAAGGGATATC+TGG | - | chr5_2:7397920-7397939 | None:intergenic | 35.0% | |
| !! | TTGCCTCATTTTGGAAAATG+AGG | + | chr5_2:7397941-7397960 | Msa0753790:CDS | 35.0% |
| ATTATGCTTGCTTCGTTGAA+TGG | + | chr5_2:7396667-7396686 | Msa0753790:exon | 35.0% | |
| ! | TAGCTATATAGTGTTGGAAG+TGG | + | chr5_2:7396814-7396833 | Msa0753790:intron | 35.0% |
| ATATGTACATAGTCATGTCG+AGG | - | chr5_2:7396939-7396958 | None:intergenic | 35.0% | |
| GTTCGCTTTGTGGTAATTAA+TGG | + | chr5_2:7397034-7397053 | Msa0753790:intron | 35.0% | |
| ! | AAGCCTTTTCCCATTAAGTT+GGG | - | chr5_2:7397160-7397179 | None:intergenic | 35.0% |
| TTTGAGCTGAAGATCTGTTA+TGG | + | chr5_2:7397271-7397290 | Msa0753790:intron | 35.0% | |
| ! | GTATTCTATCTGTAGTTCTG+TGG | + | chr5_2:7397531-7397550 | Msa0753790:intron | 35.0% |
| AAACAAAGCAAGTGAGACTA+AGG | - | chr5_2:7397775-7397794 | None:intergenic | 35.0% | |
| GGTTTAAAAGATTGACAGGT+TGG | + | chr5_2:7397804-7397823 | Msa0753790:intron | 35.0% | |
| AAAGGGATATCTGGGAAATT+TGG | - | chr5_2:7397911-7397930 | None:intergenic | 35.0% | |
| TCATGCTTAAAGGGATATCT+GGG | - | chr5_2:7397919-7397938 | None:intergenic | 35.0% | |
| ATCATGCTTAAAGGGATATC+TGG | - | chr5_2:7397920-7397939 | None:intergenic | 35.0% | |
| ACTGAATTCCATGCCTATTG+AGG | + | chr5_2:7397075-7397094 | Msa0753790:intron | 40.0% | |
| !!! | CTTTTCCCATTAAGTTGGGT+CGG | - | chr5_2:7397156-7397175 | None:intergenic | 40.0% |
| ! | CAAGCCTTTTCCCATTAAGT+TGG | - | chr5_2:7397161-7397180 | None:intergenic | 40.0% |
| CAACTTAATGGGAAAAGGCT+TGG | + | chr5_2:7397159-7397178 | Msa0753790:intron | 40.0% | |
| ! | TTGTGTTGCCCTGTTTTCAT+TGG | + | chr5_2:7397213-7397232 | Msa0753790:intron | 40.0% |
| GAGGCAACATCATGCTTAAA+GGG | - | chr5_2:7397928-7397947 | None:intergenic | 40.0% | |
| TGAGGCAACATCATGCTTAA+AGG | - | chr5_2:7397929-7397948 | None:intergenic | 40.0% | |
| ! | AGCATGATGTTGCCTCATTT+TGG | + | chr5_2:7397932-7397951 | Msa0753790:CDS | 40.0% |
| ACTGAATTCCATGCCTATTG+AGG | + | chr5_2:7397075-7397094 | Msa0753790:intron | 40.0% | |
| !!! | CTTTTCCCATTAAGTTGGGT+CGG | - | chr5_2:7397156-7397175 | None:intergenic | 40.0% |
| ! | CAAGCCTTTTCCCATTAAGT+TGG | - | chr5_2:7397161-7397180 | None:intergenic | 40.0% |
| CAACTTAATGGGAAAAGGCT+TGG | + | chr5_2:7397159-7397178 | Msa0753790:intron | 40.0% | |
| ! | TTGTGTTGCCCTGTTTTCAT+TGG | + | chr5_2:7397213-7397232 | Msa0753790:intron | 40.0% |
| GAGGCAACATCATGCTTAAA+GGG | - | chr5_2:7397928-7397947 | None:intergenic | 40.0% | |
| TGAGGCAACATCATGCTTAA+AGG | - | chr5_2:7397929-7397948 | None:intergenic | 40.0% | |
| ! | AGCATGATGTTGCCTCATTT+TGG | + | chr5_2:7397932-7397951 | Msa0753790:CDS | 40.0% |
| ! | ACGAGAGAGATTCGGTATGA+AGG | + | chr5_2:7396619-7396638 | Msa0753790:five_prime_UTR | 45.0% |
| CTGCATCTTCAAGAGCAACA+CGG | - | chr5_2:7396711-7396730 | None:intergenic | 45.0% | |
| ! | ATGCAGGTGGTTTGCATAGA+GGG | + | chr5_2:7396725-7396744 | Msa0753790:CDS | 45.0% |
| TTGCAACTTCAACAGAGACG+AGG | + | chr5_2:7396972-7396991 | Msa0753790:intron | 45.0% | |
| !! | ATTAAGTTGGGTCGGCTACA+TGG | - | chr5_2:7397148-7397167 | None:intergenic | 45.0% |
| ATGTAGCCGACCCAACTTAA+TGG | + | chr5_2:7397147-7397166 | Msa0753790:intron | 45.0% | |
| TGTAGCCGACCCAACTTAAT+GGG | + | chr5_2:7397148-7397167 | Msa0753790:intron | 45.0% | |
| CGACCCAACTTAATGGGAAA+AGG | + | chr5_2:7397154-7397173 | Msa0753790:intron | 45.0% | |
| TGGCTGCTGCTATACATACT+TGG | + | chr5_2:7397291-7397310 | Msa0753790:intron | 45.0% | |
| CCTATAAGCCTACAGAGCTT+AGG | - | chr5_2:7397340-7397359 | None:intergenic | 45.0% | |
| CCTAAGCTCTGTAGGCTTAT+AGG | + | chr5_2:7397337-7397356 | Msa0753790:intron | 45.0% | |
| ACTCTCCAAGACACAAGCAT+AGG | + | chr5_2:7397864-7397883 | Msa0753790:CDS | 45.0% | |
| ! | ACGAGAGAGATTCGGTATGA+AGG | + | chr5_2:7396619-7396638 | Msa0753790:five_prime_UTR | 45.0% |
| CTGCATCTTCAAGAGCAACA+CGG | - | chr5_2:7396711-7396730 | None:intergenic | 45.0% | |
| ! | ATGCAGGTGGTTTGCATAGA+GGG | + | chr5_2:7396725-7396744 | Msa0753790:CDS | 45.0% |
| TTGCAACTTCAACAGAGACG+AGG | + | chr5_2:7396972-7396991 | Msa0753790:intron | 45.0% | |
| !! | ATTAAGTTGGGTCGGCTACA+TGG | - | chr5_2:7397148-7397167 | None:intergenic | 45.0% |
| ATGTAGCCGACCCAACTTAA+TGG | + | chr5_2:7397147-7397166 | Msa0753790:intron | 45.0% | |
| TGTAGCCGACCCAACTTAAT+GGG | + | chr5_2:7397148-7397167 | Msa0753790:intron | 45.0% | |
| CGACCCAACTTAATGGGAAA+AGG | + | chr5_2:7397154-7397173 | Msa0753790:intron | 45.0% | |
| TGGCTGCTGCTATACATACT+TGG | + | chr5_2:7397291-7397310 | Msa0753790:intron | 45.0% | |
| CCTATAAGCCTACAGAGCTT+AGG | - | chr5_2:7397340-7397359 | None:intergenic | 45.0% | |
| CCTAAGCTCTGTAGGCTTAT+AGG | + | chr5_2:7397337-7397356 | Msa0753790:intron | 45.0% | |
| ACTCTCCAAGACACAAGCAT+AGG | + | chr5_2:7397864-7397883 | Msa0753790:CDS | 45.0% | |
| ! | CGTGTTGCTCTTGAAGATGC+AGG | + | chr5_2:7396709-7396728 | Msa0753790:CDS | 50.0% |
| GTTGCTCTTGAAGATGCAGG+TGG | + | chr5_2:7396712-7396731 | Msa0753790:CDS | 50.0% | |
| ! | GATGCAGGTGGTTTGCATAG+AGG | + | chr5_2:7396724-7396743 | Msa0753790:CDS | 50.0% |
| CTTCAACAGAGACGAGGACT+AGG | + | chr5_2:7396978-7396997 | Msa0753790:intron | 50.0% | |
| ! | AGAGAAGCGTGTTCGCTTTG+TGG | + | chr5_2:7397024-7397043 | Msa0753790:intron | 50.0% |
| ! | CGTGTTGCTCTTGAAGATGC+AGG | + | chr5_2:7396709-7396728 | Msa0753790:CDS | 50.0% |
| GTTGCTCTTGAAGATGCAGG+TGG | + | chr5_2:7396712-7396731 | Msa0753790:CDS | 50.0% | |
| ! | GATGCAGGTGGTTTGCATAG+AGG | + | chr5_2:7396724-7396743 | Msa0753790:CDS | 50.0% |
| CTTCAACAGAGACGAGGACT+AGG | + | chr5_2:7396978-7396997 | Msa0753790:intron | 50.0% | |
| ! | AGAGAAGCGTGTTCGCTTTG+TGG | + | chr5_2:7397024-7397043 | Msa0753790:intron | 50.0% |
| CTCAGCGTCCTCAATAGGCA+TGG | - | chr5_2:7397086-7397105 | None:intergenic | 55.0% | |
| TGCCTATTGAGGACGCTGAG+TGG | + | chr5_2:7397086-7397105 | Msa0753790:intron | 55.0% | |
| CACCACTCAGCGTCCTCAAT+AGG | - | chr5_2:7397091-7397110 | None:intergenic | 55.0% | |
| CCACGCCTATGCTTGTGTCT+TGG | - | chr5_2:7397872-7397891 | None:intergenic | 55.0% | |
| CCAAGACACAAGCATAGGCG+TGG | + | chr5_2:7397869-7397888 | Msa0753790:CDS | 55.0% | |
| CTCAGCGTCCTCAATAGGCA+TGG | - | chr5_2:7397086-7397105 | None:intergenic | 55.0% | |
| TGCCTATTGAGGACGCTGAG+TGG | + | chr5_2:7397086-7397105 | Msa0753790:intron | 55.0% | |
| CACCACTCAGCGTCCTCAAT+AGG | - | chr5_2:7397091-7397110 | None:intergenic | 55.0% | |
| CCACGCCTATGCTTGTGTCT+TGG | - | chr5_2:7397872-7397891 | None:intergenic | 55.0% | |
| CCAAGACACAAGCATAGGCG+TGG | + | chr5_2:7397869-7397888 | Msa0753790:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 7396617 | 7397961 | 7396617 | ID=Msa0753790;Name=Msa0753790 |
| chr5_2 | mRNA | 7396617 | 7397961 | 7396617 | ID=Msa0753790-mRNA-1;Parent=Msa0753790;Name=Msa0753790-mRNA-1;_AED=0.48;_eAED=0.51;_QI=53|0|0.5|1|0|0|2|0|80 |
| chr5_2 | exon | 7396617 | 7396772 | 7396617 | ID=Msa0753790-mRNA-1:exon:3341;Parent=Msa0753790-mRNA-1 |
| chr5_2 | exon | 7397822 | 7397961 | 7397822 | ID=Msa0753790-mRNA-1:exon:3342;Parent=Msa0753790-mRNA-1 |
| chr5_2 | five_prime_UTR | 7396617 | 7396669 | 7396617 | ID=Msa0753790-mRNA-1:five_prime_utr;Parent=Msa0753790-mRNA-1 |
| chr5_2 | CDS | 7396670 | 7396772 | 7396670 | ID=Msa0753790-mRNA-1:cds;Parent=Msa0753790-mRNA-1 |
| chr5_2 | CDS | 7397822 | 7397961 | 7397822 | ID=Msa0753790-mRNA-1:cds;Parent=Msa0753790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
