AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037700 MtrunA17_Chr1g0202421 85.843 332 16 5 1 320 1 313 0.0 548
Msa0037700 MtrunA17_Chr8g0387621 35.102 245 99 8 100 290 98 336 5.69e-26 106
Msa0037700 MtrunA17_Chr5g0397131 38.326 227 90 12 104 295 159 370 6.82e-24 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037700 AT5G52870.2 33.442 308 149 12 1 294 1 266 6.19e-29 113
Msa0037700 AT5G52870.1 33.442 308 149 12 1 294 1 266 6.49e-29 113

Find 68 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGAAACTCGCTCTGTTT+TGG 0.159958 1_1:+66825036 None:intergenic
TAGGGGTGATGATTAGTAAT+AGG 0.303727 1_1:-66824417 Msa0037700:three_prime_UTR
CTTTAAACTTCCTCAAGTTC+TGG 0.310344 1_1:-66825597 Msa0037700:CDS
GAAACTTTGGTAGCAAAATT+CGG 0.358487 1_1:-66825078 Msa0037700:CDS
AATGAAATGAAATTAGATTA+GGG 0.364082 1_1:-66824435 Msa0037700:three_prime_UTR
GATTAAGCCTCTTTATGTTA+AGG 0.375290 1_1:-66824987 Msa0037700:CDS
ATAGAGAGAGAATAGTGTTT+AGG 0.382447 1_1:+66825646 None:intergenic
AAATGAAATGAAATTAGATT+AGG 0.383083 1_1:-66824436 Msa0037700:three_prime_UTR
TTTGTTGTCGAAATCATTCA+TGG 0.384507 1_1:+66825474 None:intergenic
TTCGAAACCTTAACATAAAG+AGG 0.384723 1_1:+66824980 None:intergenic
CACCGGCGGTTGGCTCTTTG+AGG 0.387789 1_1:-66824892 Msa0037700:CDS
GAAAGTGGTGACGAAGCATT+TGG 0.391796 1_1:-66824870 Msa0037700:CDS
TTGGACATGTGTGTCGTCAT+TGG 0.408325 1_1:+66825450 None:intergenic
TTTCATTACTCTTTCTATGC+TGG 0.414240 1_1:+66824483 None:intergenic
ATGGATGTTGTTGGTGGTGA+TGG 0.423562 1_1:-66824576 Msa0037700:CDS
GAGCTTGTTCTCCGGCGAAC+AGG 0.426734 1_1:-66824817 Msa0037700:CDS
TTCAGAAAACAGAGAAGAAC+TGG 0.432309 1_1:-66825238 Msa0037700:CDS
CTCTTAACTCTTCCATTCCA+TGG 0.434217 1_1:-66825623 Msa0037700:exon
GGTAGCAAAATTCGGAATCA+AGG 0.437082 1_1:-66825070 Msa0037700:CDS
GATTCTTCAATGGATGTTGT+TGG 0.446904 1_1:-66824585 Msa0037700:CDS
AGGTCGTCGGGTACGGTGGC+CGG 0.454518 1_1:-66824839 Msa0037700:CDS
GAGAACAGCACAAGAAACTT+TGG 0.457374 1_1:-66825091 Msa0037700:CDS
TGCTGATCTTAGAAGTGAAA+TGG 0.459585 1_1:+66825282 None:intergenic
TTCGAAGAGGTATGGTGATA+AGG 0.470661 1_1:-66824963 Msa0037700:CDS
TGCTTCGCCGTCGTCGTCAC+CGG 0.472585 1_1:-66824909 Msa0037700:CDS
TAAGAGTAGGTCGTCGGGTA+CGG 0.475412 1_1:-66824846 Msa0037700:CDS
ACTCTTCCTTTGTTGTGTTG+TGG 0.477112 1_1:-66824306 Msa0037700:three_prime_UTR
GTTAAGGTTTCGAAGAGGTA+TGG 0.486790 1_1:-66824971 Msa0037700:CDS
GGTGATAAGGTGAAATTCTC+CGG 0.500103 1_1:-66824950 Msa0037700:CDS
GATGTCTTTCTTGATGATGT+TGG 0.514432 1_1:-66824512 Msa0037700:three_prime_UTR
CTGTTCTCTCTACTAAGCAT+TGG 0.523196 1_1:+66825106 None:intergenic
AAAGTGGTGACGAAGCATTT+GGG 0.526267 1_1:-66824869 Msa0037700:CDS
AAGATGAGGAACAGTGATGT+TGG 0.527025 1_1:+66825555 None:intergenic
GAGGAAGTTTAAAGCATCCA+TGG 0.529668 1_1:+66825606 None:intergenic
CAAAACAGAGCGAGTTTCAA+AGG 0.536455 1_1:-66825035 Msa0037700:CDS
TGTTGTTCTTCCAGAACTTG+AGG 0.537675 1_1:+66825587 None:intergenic
GGTTGGCTCTTTGAGGAAAG+TGG 0.542571 1_1:-66824885 Msa0037700:CDS
TTGGGTAAGAGTAGGTCGTC+GGG 0.544095 1_1:-66824851 Msa0037700:CDS
CCGTCGTCGTCACCGGCGGT+TGG 0.545238 1_1:-66824902 Msa0037700:CDS
AGTTTAAAGCATCCATGGAA+TGG 0.546782 1_1:+66825611 None:intergenic
AAGGTAAAGATTCTGAAACT+TGG 0.555444 1_1:+66825259 None:intergenic
AGAAGTGAAATGGGTGATTG+TGG 0.566819 1_1:+66825292 None:intergenic
GGTGGCCGGAGCTTGTTCTC+CGG 0.566890 1_1:-66824825 Msa0037700:CDS
GCTGATCTTAGAAGTGAAAT+GGG 0.571175 1_1:+66825283 None:intergenic
AGCTACCGTCATCCTCTCGC+CGG 0.572871 1_1:+66824931 None:intergenic
ATTCTCCGGCGAGAGGATGA+CGG 0.574018 1_1:-66824936 Msa0037700:CDS
TTCCTCAAAGAGCCAACCGC+CGG 0.578853 1_1:+66824890 None:intergenic
CGAAGCATTTGGGTAAGAGT+AGG 0.585768 1_1:-66824859 Msa0037700:CDS
TTTGGGTAAGAGTAGGTCGT+CGG 0.592489 1_1:-66824852 Msa0037700:CDS
ACGCTGTTGCAGCAACATGA+TGG 0.598349 1_1:-66824785 Msa0037700:CDS
GTATCATCACTCCTGTTCGC+CGG 0.598908 1_1:+66824806 None:intergenic
TCTTCAATGGATGTTGTTGG+TGG 0.599000 1_1:-66824582 Msa0037700:CDS
GTTCGCCGGAGAACAAGCTC+CGG 0.605965 1_1:+66824820 None:intergenic
TTCGCCGTCGTCGTCACCGG+CGG 0.615008 1_1:-66824906 Msa0037700:CDS
GAGTAGGTCGTCGGGTACGG+TGG 0.623063 1_1:-66824843 Msa0037700:CDS
CCAACCGCCGGTGACGACGA+CGG 0.626873 1_1:+66824902 None:intergenic
TGATTAGTAATAGGTTTGTG+TGG 0.630154 1_1:-66824408 Msa0037700:three_prime_UTR
ATGAAATGAAATTAGATTAG+GGG 0.635263 1_1:-66824434 Msa0037700:three_prime_UTR
ATGTATTCGTCTTGTGACTG+TGG 0.645057 1_1:-66824204 None:intergenic
TCTGTTTCTACAACAAGATG+AGG 0.645146 1_1:+66825541 None:intergenic
AAGAGATCCTTCAATTCCAG+AGG 0.646564 1_1:-66824737 Msa0037700:intron
AGGTGAAATTCTCCGGCGAG+AGG 0.647273 1_1:-66824943 Msa0037700:CDS
GAATCAGAAGAAAGAAACCA+AGG 0.653413 1_1:-66825173 Msa0037700:CDS
ATGAGGAACAGTGATGTTGG+AGG 0.666650 1_1:+66825558 None:intergenic
TTTATGTTAAGGTTTCGAAG+AGG 0.679040 1_1:-66824976 Msa0037700:CDS
AATTCGGAATCAAGGAACAG+AGG 0.681760 1_1:-66825062 Msa0037700:CDS
AAAACTCCACAACACAACAA+AGG 0.684017 1_1:+66824300 None:intergenic
TTAGTAATAGGTTTGTGTGG+TGG 0.725766 1_1:-66824405 Msa0037700:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATATGATTATTTTTGAA+AGG - chr1_1:66825202-66825221 Msa0037700:CDS 10.0%
!!! TAAATATGATTATTTTTGAA+AGG - chr1_1:66825202-66825221 Msa0037700:CDS 10.0%
!! AAATGAAATGAAATTAGATT+AGG - chr1_1:66825431-66825450 Msa0037700:CDS 15.0%
!! AATGAAATGAAATTAGATTA+GGG - chr1_1:66825432-66825451 Msa0037700:CDS 15.0%
!! AAATGAAATGAAATTAGATT+AGG - chr1_1:66825431-66825450 Msa0037700:CDS 15.0%
!! AATGAAATGAAATTAGATTA+GGG - chr1_1:66825432-66825451 Msa0037700:CDS 15.0%
!!! ATAATTTTCAGATTCTTCAA+TGG - chr1_1:66825272-66825291 Msa0037700:CDS 20.0%
!! ATGAAATGAAATTAGATTAG+GGG - chr1_1:66825433-66825452 Msa0037700:CDS 20.0%
!!! AATCTATTTTCAGTTGATAT+GGG - chr1_1:66825513-66825532 Msa0037700:CDS 20.0%
!!! ATAATTTTCAGATTCTTCAA+TGG - chr1_1:66825272-66825291 Msa0037700:CDS 20.0%
!! ATGAAATGAAATTAGATTAG+GGG - chr1_1:66825433-66825452 Msa0037700:CDS 20.0%
!!! AATCTATTTTCAGTTGATAT+GGG - chr1_1:66825513-66825532 Msa0037700:CDS 20.0%
!!! ATAAGAAGTGTTGTTTTTTG+AGG + chr1_1:66824497-66824516 None:intergenic 25.0%
!! TTCAACAAGAAATTCTTTTG+AGG - chr1_1:66825323-66825342 Msa0037700:CDS 25.0%
!!! GAATCTATTTTCAGTTGATA+TGG - chr1_1:66825512-66825531 Msa0037700:CDS 25.0%
!!! ATAAGAAGTGTTGTTTTTTG+AGG + chr1_1:66824497-66824516 None:intergenic 25.0%
!! TTCAACAAGAAATTCTTTTG+AGG - chr1_1:66825323-66825342 Msa0037700:CDS 25.0%
!!! GAATCTATTTTCAGTTGATA+TGG - chr1_1:66825512-66825531 Msa0037700:CDS 25.0%
ATAGAGAGAGAATAGTGTTT+AGG + chr1_1:66824224-66824243 None:intergenic 30.0%
! TTTGTTGTCGAAATCATTCA+TGG + chr1_1:66824396-66824415 None:intergenic 30.0%
! GTTTTCTGTTTTGTGAGTTT+TGG + chr1_1:66824444-66824463 None:intergenic 30.0%
!!! AGCACTTTTCTTTTTGAGAT+AGG + chr1_1:66824533-66824552 None:intergenic 30.0%
!! AAGGTAAAGATTCTGAAACT+TGG + chr1_1:66824611-66824630 None:intergenic 30.0%
TAGTTTCACAGAAAAAACCT+TGG + chr1_1:66824714-66824733 None:intergenic 30.0%
! GAAACTTTGGTAGCAAAATT+CGG - chr1_1:66824789-66824808 Msa0037700:CDS 30.0%
GATTAAGCCTCTTTATGTTA+AGG - chr1_1:66824880-66824899 Msa0037700:CDS 30.0%
TTCGAAACCTTAACATAAAG+AGG + chr1_1:66824890-66824909 None:intergenic 30.0%
TTTATGTTAAGGTTTCGAAG+AGG - chr1_1:66824891-66824910 Msa0037700:CDS 30.0%
!!! AATTTTACCTCTGGAATTGA+AGG + chr1_1:66825140-66825159 None:intergenic 30.0%
! TGTGAAACAAATTTTACCTC+TGG + chr1_1:66825149-66825168 None:intergenic 30.0%
TTTCATTACTCTTTCTATGC+TGG + chr1_1:66825387-66825406 None:intergenic 30.0%
TGATTAGTAATAGGTTTGTG+TGG - chr1_1:66825459-66825478 Msa0037700:CDS 30.0%
!!! GTTGATATGGGATCTTTTTT+TGG - chr1_1:66825525-66825544 Msa0037700:CDS 30.0%
ATAGAGAGAGAATAGTGTTT+AGG + chr1_1:66824224-66824243 None:intergenic 30.0%
! TTTGTTGTCGAAATCATTCA+TGG + chr1_1:66824396-66824415 None:intergenic 30.0%
! GTTTTCTGTTTTGTGAGTTT+TGG + chr1_1:66824444-66824463 None:intergenic 30.0%
!!! AGCACTTTTCTTTTTGAGAT+AGG + chr1_1:66824533-66824552 None:intergenic 30.0%
!! AAGGTAAAGATTCTGAAACT+TGG + chr1_1:66824611-66824630 None:intergenic 30.0%
TAGTTTCACAGAAAAAACCT+TGG + chr1_1:66824714-66824733 None:intergenic 30.0%
! GAAACTTTGGTAGCAAAATT+CGG - chr1_1:66824789-66824808 Msa0037700:CDS 30.0%
GATTAAGCCTCTTTATGTTA+AGG - chr1_1:66824880-66824899 Msa0037700:CDS 30.0%
TTCGAAACCTTAACATAAAG+AGG + chr1_1:66824890-66824909 None:intergenic 30.0%
TTTATGTTAAGGTTTCGAAG+AGG - chr1_1:66824891-66824910 Msa0037700:CDS 30.0%
!!! AATTTTACCTCTGGAATTGA+AGG + chr1_1:66825140-66825159 None:intergenic 30.0%
! TGTGAAACAAATTTTACCTC+TGG + chr1_1:66825149-66825168 None:intergenic 30.0%
TTTCATTACTCTTTCTATGC+TGG + chr1_1:66825387-66825406 None:intergenic 30.0%
TGATTAGTAATAGGTTTGTG+TGG - chr1_1:66825459-66825478 Msa0037700:CDS 30.0%
!!! GTTGATATGGGATCTTTTTT+TGG - chr1_1:66825525-66825544 Msa0037700:CDS 30.0%
! AGTTTAAAGCATCCATGGAA+TGG + chr1_1:66824259-66824278 None:intergenic 35.0%
CTTTAAACTTCCTCAAGTTC+TGG - chr1_1:66824270-66824289 Msa0037700:three_prime_UTR 35.0%
!! TCTGTTTCTACAACAAGATG+AGG + chr1_1:66824329-66824348 None:intergenic 35.0%
!!! CTGTTTTGTGAGTTTTGGTT+TGG + chr1_1:66824439-66824458 None:intergenic 35.0%
!!! CTTTTTGAGATAGGTTCGTT+TGG + chr1_1:66824524-66824543 None:intergenic 35.0%
!!! GGTTTTGAAATGGGTTCAAT+TGG + chr1_1:66824557-66824576 None:intergenic 35.0%
!!! GGTGATTGTGGTTTTGAAAT+GGG + chr1_1:66824566-66824585 None:intergenic 35.0%
GCTGATCTTAGAAGTGAAAT+GGG + chr1_1:66824587-66824606 None:intergenic 35.0%
TGCTGATCTTAGAAGTGAAA+TGG + chr1_1:66824588-66824607 None:intergenic 35.0%
! AGTTCTTCTCTGTTTTCTGA+AGG + chr1_1:66824630-66824649 None:intergenic 35.0%
TTCAGAAAACAGAGAAGAAC+TGG - chr1_1:66824629-66824648 Msa0037700:intron 35.0%
GAATCAGAAGAAAGAAACCA+AGG - chr1_1:66824694-66824713 Msa0037700:intron 35.0%
!! TTTGAAACTCGCTCTGTTTT+GGG + chr1_1:66824833-66824852 None:intergenic 35.0%
GATTCTTCAATGGATGTTGT+TGG - chr1_1:66825282-66825301 Msa0037700:CDS 35.0%
!! GATGTCTTTCTTGATGATGT+TGG - chr1_1:66825355-66825374 Msa0037700:CDS 35.0%
TAGGGGTGATGATTAGTAAT+AGG - chr1_1:66825450-66825469 Msa0037700:CDS 35.0%
TTAGTAATAGGTTTGTGTGG+TGG - chr1_1:66825462-66825481 Msa0037700:CDS 35.0%
AAAACTCCACAACACAACAA+AGG + chr1_1:66825570-66825589 None:intergenic 35.0%
! AGTTTAAAGCATCCATGGAA+TGG + chr1_1:66824259-66824278 None:intergenic 35.0%
CTTTAAACTTCCTCAAGTTC+TGG - chr1_1:66824270-66824289 Msa0037700:three_prime_UTR 35.0%
!! TCTGTTTCTACAACAAGATG+AGG + chr1_1:66824329-66824348 None:intergenic 35.0%
!!! CTGTTTTGTGAGTTTTGGTT+TGG + chr1_1:66824439-66824458 None:intergenic 35.0%
!!! CTTTTTGAGATAGGTTCGTT+TGG + chr1_1:66824524-66824543 None:intergenic 35.0%
!!! GGTTTTGAAATGGGTTCAAT+TGG + chr1_1:66824557-66824576 None:intergenic 35.0%
!!! GGTGATTGTGGTTTTGAAAT+GGG + chr1_1:66824566-66824585 None:intergenic 35.0%
GCTGATCTTAGAAGTGAAAT+GGG + chr1_1:66824587-66824606 None:intergenic 35.0%
TGCTGATCTTAGAAGTGAAA+TGG + chr1_1:66824588-66824607 None:intergenic 35.0%
! AGTTCTTCTCTGTTTTCTGA+AGG + chr1_1:66824630-66824649 None:intergenic 35.0%
TTCAGAAAACAGAGAAGAAC+TGG - chr1_1:66824629-66824648 Msa0037700:intron 35.0%
GAATCAGAAGAAAGAAACCA+AGG - chr1_1:66824694-66824713 Msa0037700:intron 35.0%
!! TTTGAAACTCGCTCTGTTTT+GGG + chr1_1:66824833-66824852 None:intergenic 35.0%
GATTCTTCAATGGATGTTGT+TGG - chr1_1:66825282-66825301 Msa0037700:CDS 35.0%
!! GATGTCTTTCTTGATGATGT+TGG - chr1_1:66825355-66825374 Msa0037700:CDS 35.0%
TAGGGGTGATGATTAGTAAT+AGG - chr1_1:66825450-66825469 Msa0037700:CDS 35.0%
TTAGTAATAGGTTTGTGTGG+TGG - chr1_1:66825462-66825481 Msa0037700:CDS 35.0%
AAAACTCCACAACACAACAA+AGG + chr1_1:66825570-66825589 None:intergenic 35.0%
CTCTTAACTCTTCCATTCCA+TGG - chr1_1:66824244-66824263 Msa0037700:three_prime_UTR 40.0%
! GAGGAAGTTTAAAGCATCCA+TGG + chr1_1:66824264-66824283 None:intergenic 40.0%
TGTTGTTCTTCCAGAACTTG+AGG + chr1_1:66824283-66824302 None:intergenic 40.0%
AAGATGAGGAACAGTGATGT+TGG + chr1_1:66824315-66824334 None:intergenic 40.0%
!!! GGGTGATTGTGGTTTTGAAA+TGG + chr1_1:66824567-66824586 None:intergenic 40.0%
AGAAGTGAAATGGGTGATTG+TGG + chr1_1:66824578-66824597 None:intergenic 40.0%
CTGTTCTCTCTACTAAGCAT+TGG + chr1_1:66824764-66824783 None:intergenic 40.0%
GAGAACAGCACAAGAAACTT+TGG - chr1_1:66824776-66824795 Msa0037700:CDS 40.0%
GGTAGCAAAATTCGGAATCA+AGG - chr1_1:66824797-66824816 Msa0037700:CDS 40.0%
AATTCGGAATCAAGGAACAG+AGG - chr1_1:66824805-66824824 Msa0037700:CDS 40.0%
!!! CTTTGAAACTCGCTCTGTTT+TGG + chr1_1:66824834-66824853 None:intergenic 40.0%
CAAAACAGAGCGAGTTTCAA+AGG - chr1_1:66824832-66824851 Msa0037700:CDS 40.0%
GTTAAGGTTTCGAAGAGGTA+TGG - chr1_1:66824896-66824915 Msa0037700:CDS 40.0%
! TTCGAAGAGGTATGGTGATA+AGG - chr1_1:66824904-66824923 Msa0037700:CDS 40.0%
GGTGATAAGGTGAAATTCTC+CGG - chr1_1:66824917-66824936 Msa0037700:CDS 40.0%
! AAAGTGGTGACGAAGCATTT+GGG - chr1_1:66824998-66825017 Msa0037700:CDS 40.0%
AAGAGATCCTTCAATTCCAG+AGG - chr1_1:66825130-66825149 Msa0037700:CDS 40.0%
TCTTCAATGGATGTTGTTGG+TGG - chr1_1:66825285-66825304 Msa0037700:CDS 40.0%
! ACTCTTCCTTTGTTGTGTTG+TGG - chr1_1:66825561-66825580 Msa0037700:CDS 40.0%
CTCTTAACTCTTCCATTCCA+TGG - chr1_1:66824244-66824263 Msa0037700:three_prime_UTR 40.0%
! GAGGAAGTTTAAAGCATCCA+TGG + chr1_1:66824264-66824283 None:intergenic 40.0%
TGTTGTTCTTCCAGAACTTG+AGG + chr1_1:66824283-66824302 None:intergenic 40.0%
AAGATGAGGAACAGTGATGT+TGG + chr1_1:66824315-66824334 None:intergenic 40.0%
!!! GGGTGATTGTGGTTTTGAAA+TGG + chr1_1:66824567-66824586 None:intergenic 40.0%
AGAAGTGAAATGGGTGATTG+TGG + chr1_1:66824578-66824597 None:intergenic 40.0%
CTGTTCTCTCTACTAAGCAT+TGG + chr1_1:66824764-66824783 None:intergenic 40.0%
GAGAACAGCACAAGAAACTT+TGG - chr1_1:66824776-66824795 Msa0037700:CDS 40.0%
GGTAGCAAAATTCGGAATCA+AGG - chr1_1:66824797-66824816 Msa0037700:CDS 40.0%
AATTCGGAATCAAGGAACAG+AGG - chr1_1:66824805-66824824 Msa0037700:CDS 40.0%
!!! CTTTGAAACTCGCTCTGTTT+TGG + chr1_1:66824834-66824853 None:intergenic 40.0%
CAAAACAGAGCGAGTTTCAA+AGG - chr1_1:66824832-66824851 Msa0037700:CDS 40.0%
GTTAAGGTTTCGAAGAGGTA+TGG - chr1_1:66824896-66824915 Msa0037700:CDS 40.0%
! TTCGAAGAGGTATGGTGATA+AGG - chr1_1:66824904-66824923 Msa0037700:CDS 40.0%
GGTGATAAGGTGAAATTCTC+CGG - chr1_1:66824917-66824936 Msa0037700:CDS 40.0%
! AAAGTGGTGACGAAGCATTT+GGG - chr1_1:66824998-66825017 Msa0037700:CDS 40.0%
AAGAGATCCTTCAATTCCAG+AGG - chr1_1:66825130-66825149 Msa0037700:CDS 40.0%
TCTTCAATGGATGTTGTTGG+TGG - chr1_1:66825285-66825304 Msa0037700:CDS 40.0%
! ACTCTTCCTTTGTTGTGTTG+TGG - chr1_1:66825561-66825580 Msa0037700:CDS 40.0%
ATGAGGAACAGTGATGTTGG+AGG + chr1_1:66824312-66824331 None:intergenic 45.0%
TTGGACATGTGTGTCGTCAT+TGG + chr1_1:66824420-66824439 None:intergenic 45.0%
! GAAAGTGGTGACGAAGCATT+TGG - chr1_1:66824997-66825016 Msa0037700:CDS 45.0%
! CGAAGCATTTGGGTAAGAGT+AGG - chr1_1:66825008-66825027 Msa0037700:CDS 45.0%
TTTGGGTAAGAGTAGGTCGT+CGG - chr1_1:66825015-66825034 Msa0037700:CDS 45.0%
!! ATGGATGTTGTTGGTGGTGA+TGG - chr1_1:66825291-66825310 Msa0037700:CDS 45.0%
ATGAGGAACAGTGATGTTGG+AGG + chr1_1:66824312-66824331 None:intergenic 45.0%
TTGGACATGTGTGTCGTCAT+TGG + chr1_1:66824420-66824439 None:intergenic 45.0%
! GAAAGTGGTGACGAAGCATT+TGG - chr1_1:66824997-66825016 Msa0037700:CDS 45.0%
! CGAAGCATTTGGGTAAGAGT+AGG - chr1_1:66825008-66825027 Msa0037700:CDS 45.0%
TTTGGGTAAGAGTAGGTCGT+CGG - chr1_1:66825015-66825034 Msa0037700:CDS 45.0%
!! ATGGATGTTGTTGGTGGTGA+TGG - chr1_1:66825291-66825310 Msa0037700:CDS 45.0%
! GGTTGGCTCTTTGAGGAAAG+TGG - chr1_1:66824982-66825001 Msa0037700:CDS 50.0%
TTGGGTAAGAGTAGGTCGTC+GGG - chr1_1:66825016-66825035 Msa0037700:CDS 50.0%
TAAGAGTAGGTCGTCGGGTA+CGG - chr1_1:66825021-66825040 Msa0037700:CDS 50.0%
GTATCATCACTCCTGTTCGC+CGG + chr1_1:66825064-66825083 None:intergenic 50.0%
ACGCTGTTGCAGCAACATGA+TGG - chr1_1:66825082-66825101 Msa0037700:CDS 50.0%
! GGTTGGCTCTTTGAGGAAAG+TGG - chr1_1:66824982-66825001 Msa0037700:CDS 50.0%
TTGGGTAAGAGTAGGTCGTC+GGG - chr1_1:66825016-66825035 Msa0037700:CDS 50.0%
TAAGAGTAGGTCGTCGGGTA+CGG - chr1_1:66825021-66825040 Msa0037700:CDS 50.0%
GTATCATCACTCCTGTTCGC+CGG + chr1_1:66825064-66825083 None:intergenic 50.0%
ACGCTGTTGCAGCAACATGA+TGG - chr1_1:66825082-66825101 Msa0037700:CDS 50.0%
AGGTGAAATTCTCCGGCGAG+AGG - chr1_1:66824924-66824943 Msa0037700:CDS 55.0%
ATTCTCCGGCGAGAGGATGA+CGG - chr1_1:66824931-66824950 Msa0037700:CDS 55.0%
TTCCTCAAAGAGCCAACCGC+CGG + chr1_1:66824980-66824999 None:intergenic 55.0%
AGGTGAAATTCTCCGGCGAG+AGG - chr1_1:66824924-66824943 Msa0037700:CDS 55.0%
ATTCTCCGGCGAGAGGATGA+CGG - chr1_1:66824931-66824950 Msa0037700:CDS 55.0%
TTCCTCAAAGAGCCAACCGC+CGG + chr1_1:66824980-66824999 None:intergenic 55.0%
AGCTACCGTCATCCTCTCGC+CGG + chr1_1:66824939-66824958 None:intergenic 60.0%
GTTCGCCGGAGAACAAGCTC+CGG + chr1_1:66825050-66825069 None:intergenic 60.0%
! GAGCTTGTTCTCCGGCGAAC+AGG - chr1_1:66825050-66825069 Msa0037700:CDS 60.0%
AGCTACCGTCATCCTCTCGC+CGG + chr1_1:66824939-66824958 None:intergenic 60.0%
GTTCGCCGGAGAACAAGCTC+CGG + chr1_1:66825050-66825069 None:intergenic 60.0%
! GAGCTTGTTCTCCGGCGAAC+AGG - chr1_1:66825050-66825069 Msa0037700:CDS 60.0%
TGCTTCGCCGTCGTCGTCAC+CGG - chr1_1:66824958-66824977 Msa0037700:CDS 65.0%
! CACCGGCGGTTGGCTCTTTG+AGG - chr1_1:66824975-66824994 Msa0037700:CDS 65.0%
GAGTAGGTCGTCGGGTACGG+TGG - chr1_1:66825024-66825043 Msa0037700:CDS 65.0%
! GGTGGCCGGAGCTTGTTCTC+CGG - chr1_1:66825042-66825061 Msa0037700:CDS 65.0%
TGCTTCGCCGTCGTCGTCAC+CGG - chr1_1:66824958-66824977 Msa0037700:CDS 65.0%
! CACCGGCGGTTGGCTCTTTG+AGG - chr1_1:66824975-66824994 Msa0037700:CDS 65.0%
GAGTAGGTCGTCGGGTACGG+TGG - chr1_1:66825024-66825043 Msa0037700:CDS 65.0%
! GGTGGCCGGAGCTTGTTCTC+CGG - chr1_1:66825042-66825061 Msa0037700:CDS 65.0%
TTCGCCGTCGTCGTCACCGG+CGG - chr1_1:66824961-66824980 Msa0037700:CDS 70.0%
CCAACCGCCGGTGACGACGA+CGG + chr1_1:66824968-66824987 None:intergenic 70.0%
AGGTCGTCGGGTACGGTGGC+CGG - chr1_1:66825028-66825047 Msa0037700:CDS 70.0%
TTCGCCGTCGTCGTCACCGG+CGG - chr1_1:66824961-66824980 Msa0037700:CDS 70.0%
CCAACCGCCGGTGACGACGA+CGG + chr1_1:66824968-66824987 None:intergenic 70.0%
AGGTCGTCGGGTACGGTGGC+CGG - chr1_1:66825028-66825047 Msa0037700:CDS 70.0%
CCGTCGTCGTCACCGGCGGT+TGG - chr1_1:66824965-66824984 Msa0037700:CDS 75.0%
CCGTCGTCGTCACCGGCGGT+TGG - chr1_1:66824965-66824984 Msa0037700:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 66824207 66825682 66824207 ID=Msa0037700;Name=Msa0037700
chr1_1 mRNA 66824207 66825682 66824207 ID=Msa0037700-mRNA-1;Parent=Msa0037700;Name=Msa0037700-mRNA-1;_AED=0.00;_eAED=0.00;_QI=56|1|1|1|1|1|2|326|320
chr1_1 exon 66824207 66824606 66824207 ID=Msa0037700-mRNA-1:exon:21636;Parent=Msa0037700-mRNA-1
chr1_1 exon 66824738 66825682 66824738 ID=Msa0037700-mRNA-1:exon:21635;Parent=Msa0037700-mRNA-1
chr1_1 five_prime_UTR 66825627 66825682 66825627 ID=Msa0037700-mRNA-1:five_prime_utr;Parent=Msa0037700-mRNA-1
chr1_1 CDS 66824738 66825626 66824738 ID=Msa0037700-mRNA-1:cds;Parent=Msa0037700-mRNA-1
chr1_1 CDS 66824533 66824606 66824533 ID=Msa0037700-mRNA-1:cds;Parent=Msa0037700-mRNA-1
chr1_1 three_prime_UTR 66824207 66824532 66824207 ID=Msa0037700-mRNA-1:three_prime_utr;Parent=Msa0037700-mRNA-1
Gene Sequence

>Msa0037700

ATGGATGCTTTAAACTTCCTCAAGTTCTGGAAGAACAACACAACAACCTCCAACATCACTGTTCCTCATCTTGTTGTAGAAACAGACAGCGAATCAGACGAAGATGACTCATTCTTCGACTTAGAACTCTCCATGAATGATTTCGACAACAAAACCAATGACGACACACATGTCCAAACCAAAACTCACAAAACAGAAAACATTATCTACGAGAAAACTGAAACTAATGTTCCTCAAAAAACAACACTTCTTATGTCTCCAAACGAACCTATCTCAAAAAGAAAAGTGCTTCCAATTGAACCCATTTCAAAACCACAATCACCCATTTCACTTCTAAGATCAGCACCAAGTTTCAGAATCTTTACCTTCAGAAAACAGAGAAGAACTGGTTCTGAAAAAACAGACGAGTTTAGAAAAACAGAGTGTGAAAAGAATCAGAAGAAAGAAACCAAGGTTTTTTCTGTGAAACTAAATATAGAAGAAGATTTTCATTCTACTCCAATGCTTAGTAGAGAGAACAGCACAAGAAACTTTGGTAGCAAAATTCGGAATCAAGGAACAGAGGAACCCAAAACAGAGCGAGTTTCAAAGGAGATTTTGCAGAAATATTTGAAACTGATTAAGCCTCTTTATGTTAAGGTTTCGAAGAGGTATGGTGATAAGGTGAAATTCTCCGGCGAGAGGATGACGGTAGCTGCTTCGCCGTCGTCGTCACCGGCGGTTGGCTCTTTGAGGAAAGTGGTGACGAAGCATTTGGGTAAGAGTAGGTCGTCGGGTACGGTGGCCGGAGCTTGTTCTCCGGCGAACAGGAGTGATGATACGCTGTTGCAGCAACATGATGGAATTCAAAGTGCTATTCTTCATTGCAAGAGATCCTTCAATTCCAGAGATTCTTCAATGGATGTTGTTGGTGGTGATGGATCAATGTATTCAACAAGAAATTCTTTTGAGGATGAAGTGTGA

Protein sequence

>Msa0037700

MDALNFLKFWKNNTTTSNITVPHLVVETDSESDEDDSFFDLELSMNDFDNKTNDDTHVQTKTHKTENIIYEKTETNVPQKTTLLMSPNEPISKRKVLPIEPISKPQSPISLLRSAPSFRIFTFRKQRRTGSEKTDEFRKTECEKNQKKETKVFSVKLNIEEDFHSTPMLSRENSTRNFGSKIRNQGTEEPKTERVSKEILQKYLKLIKPLYVKVSKRYGDKVKFSGERMTVAASPSSSPAVGSLRKVVTKHLGKSRSSGTVAGACSPANRSDDTLLQQHDGIQSAILHCKRSFNSRDSSMDVVGGDGSMYSTRNSFEDEV*